Citrus Sinensis ID: 027404

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MLLRSASSPILRSCSFRSSPEPDLGMRIHTPRSISMSFSSSSIKRIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccccHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mllrsasspilrscsfrsspepdlgmrihtprsismsfssssikriprtlsdgdlqqlHITKtktlfnnpliprdllveeeeggggedgqgefstynettprlsggllldhgcgggargnggflggggdgdsgkeseSMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRailakpgdgnvlsmygdliwinhkdapraksyfdravhsapddw
Flexible Loop (DISEMBL)
mllrsasspilrscsfrsspepdlgmrihtprsismsfssssIKRIPRTLSDGDLQQLHItktktlfnnpliPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRailakpgdgnvLSMYGDLIWINHKDAPRAKSYFdravhsapddw
Low Complexity Region (SEG)
MLLRSASSPILRSCSFRSSPEPDLGMRIHTPRsismsfssssiKRIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVeeeeggggedgqgeFSTYNETTPRlsggllldhgcgggargnggflggggdgdsgKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW
Disordered region (IsUnstruct)
*********************************************************LHITKTKTLFNNPLI*********************************GLLLDHGCGGGAR*********************DVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDA******************
Disordered Region (DISOPRED)
MLLRSASSP***************************************************************************************************LDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP*D*
Disordered Region (DISEMBL)
***********RSCSFRSSPEPDLGMRIHTPRSISMSFSSSSIKRIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEE***********EFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW
Disordered Region (DISPRO)
*****************************************************************************************************RLSGGLL*DHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLRSASSPILRSCSFRSSPEPDLGMRIHTPRSISMSFSSSSIKRIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
118486453	304	unknown [Populus trichocarpa]	0.986	0.726	0.462	2e-41
449464638	293	PREDICTED: uncharacterized protein LOC10	0.964	0.737	0.434	2e-37
449523397	297	PREDICTED: uncharacterized protein LOC10	0.964	0.727	0.434	3e-37
255572539	292	conserved hypothetical protein [Ricinus	0.950	0.729	0.407	2e-35
217073634	292	unknown [Medicago truncatula]	0.964	0.739	0.434	4e-35
224089264	251	predicted protein [Populus trichocarpa]	0.870	0.776	0.433	1e-34
225445531	288	PREDICTED: uncharacterized protein LOC10	0.973	0.756	0.439	2e-34
357478127	292	hypothetical protein MTR_4g114690 [Medic	0.964	0.739	0.430	2e-34
388492190	292	unknown [Medicago truncatula]	0.964	0.739	0.430	3e-34
225442971	306	PREDICTED: uncharacterized protein LOC10	0.995	0.728	0.444	9e-34

>gi|118486453|gb|ABK95066.1| unknown [Populus trichocarpa]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/253 (46%), Positives = 143/253 (56%), Gaps = 32/253 (12%)

Query: 1   MLLRSASSPILRSC----SFRSSPEPDLGMRIHTPRSISMSFSSS------------SIK 44
           MLLRS+S+P L S     S   SPEP+   +I   R IS++ SSS            SIK
Sbjct: 1   MLLRSSSTPFLNSWIPPHSKEPSPEPESVHQIQKTRPISLTASSSSPFSSISSQDHDSIK 60

Query: 45  RIPRTLSDGDLQQLHITKTKT---LFNNPLIPRDLLVEEE----EGG-------GGEDGQ 90
           R+ R  S+ DL+ L + K K    + N   IP D  VEE+    EGG        GE G+
Sbjct: 61  RMTRAFSEADLRDLSVPKRKPSNGILNG--IPVDEEVEEKVSFWEGGLFFEGCEAGEKGE 118

Query: 91  GEFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAY 150
           G+            G       CGG  R + G  GG G  +S +  E+ D YYQ MI+A 
Sbjct: 119 GDNGVLEVLVTGGGGDGGGRKFCGGRGRSDFGDDGGSGSRESNEGIETTDAYYQTMIEAN 178

Query: 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210
           P + L L NYA+FLKE+R DFVKAEEYCGRAILA P D +VLSMY DLIW +HKDA RA+
Sbjct: 179 PGNPLFLRNYARFLKEVRLDFVKAEEYCGRAILANPNDADVLSMYADLIWQSHKDASRAE 238

Query: 211 SYFDRAVHSAPDD 223
           SYF RAV +APDD
Sbjct: 239 SYFLRAVKAAPDD 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464638|ref|XP_004150036.1| PREDICTED: uncharacterized protein LOC101218093 [Cucumis sativus]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/251 (43%), Positives = 144/251 (57%), Gaps = 35/251 (13%)

Query: 1   MLLRSASSPILRSC---SFRSSPEPDLGMRIHTPRSISMSFSSSSI--------KRIPRT 49
           M+LRSAS+P+L S    S  SS EP++  +I   RSI +S S S +        +RI RT
Sbjct: 1   MILRSASTPLLNSWLHHSRDSSLEPEIVHQIPKSRSILLSGSPSCLSPIIDDSPRRITRT 60

Query: 50  LSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGG-----------------GEDGQGE 92
           LS+ DL+ L + K K  F+  L     + EE  G G                 GEDG   
Sbjct: 61  LSETDLKDLSMAKMKP-FSRTLSGFSEMAEETHGVGFSCSKTASLSCGSISETGEDGGFV 119

Query: 93  FSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPE 152
                       G +    G  GG   + GF      GDS + +ES D+YYQ+MI+A P 
Sbjct: 120 SVLVGGGVGGSGGRIHGGGGSDGGDDWSFGF------GDSNRGNESTDLYYQKMIEANPG 173

Query: 153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212
           ++++L+NYA+FLKE+RGD VKA+EYCGRAIL  P DGNVLSMY DLIW   KD+PRA+SY
Sbjct: 174 NSMLLSNYARFLKEVRGDLVKAQEYCGRAILNNPEDGNVLSMYADLIWETQKDSPRAESY 233

Query: 213 FDRAVHSAPDD 223
           F++AV +AP+D
Sbjct: 234 FNQAVKAAPED 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523397|ref|XP_004168710.1| PREDICTED: uncharacterized protein LOC101231631 [Cucumis sativus]

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/251 (43%), Positives = 144/251 (57%), Gaps = 35/251 (13%)

Query: 1   MLLRSASSPILRSC---SFRSSPEPDLGMRIHTPRSISMSFSSSSI--------KRIPRT 49
           M+LRSAS+P+L S    S  SS EP++  +I   RSI +S S S +        +RI RT
Sbjct: 1   MILRSASTPLLNSWLHHSRDSSLEPEIVHQIPKSRSILLSGSPSCLSPIIDDSPRRITRT 60

Query: 50  LSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGG-----------------GEDGQGE 92
           LS+ DL+ L + K K  F+  L     + EE  G G                 GEDG   
Sbjct: 61  LSETDLKDLSMAKMKP-FSRTLSGFSEMAEETHGVGFSCSKTASLSCGSISETGEDGGFV 119

Query: 93  FSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPE 152
                       G +    G  GG   + GF      GDS + +ES D+YYQ+MI+A P 
Sbjct: 120 SVLVGGGVGGSGGRIHGGGGSDGGDDWSFGF------GDSNRGNESTDLYYQKMIEANPG 173

Query: 153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212
           ++++L+NYA+FLKE+RGD VKA+EYCGRAIL  P DGNVLSMY DLIW   KD+PRA+SY
Sbjct: 174 NSMLLSNYARFLKEVRGDLVKAQEYCGRAILNNPEDGNVLSMYADLIWETQKDSPRAESY 233

Query: 213 FDRAVHSAPDD 223
           F++AV +AP+D
Sbjct: 234 FNQAVKAAPED 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572539|ref|XP_002527204.1| conserved hypothetical protein [Ricinus communis] gi|223533469|gb|EEF35217.1| conserved hypothetical protein [Ricinus communis]

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 139/253 (54%), Gaps = 40/253 (15%)

Query: 1   MLLRSASSPILRSCSFRSSPEPDLGMRIH-TPRSISMSFSSSS--------------IKR 45
           MLLRSAS+PIL S  ++  PEP+   +I   PRSI+++   +S              +K+
Sbjct: 1   MLLRSASTPILNS--WKPQPEPESFHQIQKAPRSITLTACCNSSSSLSSSSYTSEDSVKK 58

Query: 46  IPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSG 105
           + R LS+ DL+Q  + K K   NN  I  D +  EEE    +       T++ +   L  
Sbjct: 59  MTRALSETDLKQFSVLKKKQPINN--IIMDGITFEEEVEADQ------MTFSGSGLSLDS 110

Query: 106 GLLL--DHGCGGGARGNGGFLG-------------GGGDGDSGKESESMDVYYQEMIKAY 150
             L   +  C  G   + G                G GD        S D+YYQ MI+A 
Sbjct: 111 SFLFNEEEECEVGKIQDNGLSAFVGGGVGGGGKICGAGDSGGRGGDGSTDLYYQNMIEAN 170

Query: 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210
           P ++L L+NYA+FLKE+RGDF+KAEEY  RAILA P DGN LSMY DLIW +HKDA RA+
Sbjct: 171 PGNSLFLSNYARFLKEVRGDFIKAEEYYERAILANPSDGNSLSMYADLIWQSHKDASRAE 230

Query: 211 SYFDRAVHSAPDD 223
           +YFD+AV ++PDD
Sbjct: 231 TYFDQAVKASPDD 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073634|gb|ACJ85177.1| unknown [Medicago truncatula]

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/253 (43%), Positives = 144/253 (56%), Gaps = 37/253 (14%)

Query: 1   MLLRSASSPIL-----RSCSFRSSPEPDLGMRIHTPRSISMSFSSS----------SIKR 45
           MLLRS+S+P++      + S  SSPEP+   RI   RS+++S SSS          S+ +
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 46  IPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDG----QGEFST------ 95
           + R LS+ DL       +  L   PL  R    +EEE G G  G       FS+      
Sbjct: 61  MTRALSETDL-------SSQLNRKPLHRRQFDEDEEESGTGTFGARSRTASFSSALCSLT 113

Query: 96  -----YNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAY 150
                 +E   R  G +L+    GGG   +    G    GDS   ++S D+YY+ MI+A 
Sbjct: 114 EFEESQSEVDARDGGSMLVLVEEGGGGGFDKNDGGVSRFGDSNHGNDSTDLYYRTMIEAN 173

Query: 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210
           P + L L NYAK+LKE+R D+VKAEEYCGRAILA P DGNVLS+Y DLIW  HKDAPRA+
Sbjct: 174 PGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECHKDAPRAE 233

Query: 211 SYFDRAVHSAPDD 223
           +YFD+AV +APDD
Sbjct: 234 TYFDQAVKAAPDD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089264|ref|XP_002308666.1| predicted protein [Populus trichocarpa] gi|222854642|gb|EEE92189.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/224 (43%), Positives = 129/224 (57%), Gaps = 29/224 (12%)

Query: 1   MLLRSASSPILRSCSFRSSPEPDLGMRIHTPRSISMSFSSSSIKRIPRTLSDGDLQQLHI 60
           MLLRS S+P+LR+   +SS          T R +SM         + RT S+ D++ L++
Sbjct: 1   MLLRSTSTPVLRTLVCQSS----------TSRPVSMC--------LQRTASEADIKPLYL 42

Query: 61  TKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSGGLLLDHGCGGGARGN 120
           T+ + +F+       +L E+EE     +   E                   G GG   G+
Sbjct: 43  TRER-MFSKRSFMSPVLKEKEEMSVCIEAVEEEEMVCAGGGGGGICGSGGGGGGGWDSGH 101

Query: 121 GGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGR 180
             +           + ESM++YYQ MIKAYP DAL+LANYAKFLKE+RGD VKAEE+C +
Sbjct: 102 QPY---------ESDHESMNLYYQNMIKAYPGDALLLANYAKFLKEVRGDVVKAEEFCEK 152

Query: 181 AILAK-PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
           AILA    DGNVLSMYGDLIW NHKD+ RA++YFD+AV S+PDD
Sbjct: 153 AILANGRDDGNVLSMYGDLIWNNHKDSNRAQAYFDQAVKSSPDD 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445531|ref|XP_002285275.1| PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera] gi|297738966|emb|CBI28211.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/241 (43%), Positives = 143/241 (59%), Gaps = 23/241 (9%)

Query: 1   MLLRSASSPILRSC---SFRSSPEPDLGMRIHTPRSISMSFSSSSI-----KRIPRTLSD 52
           MLLRS+S+PIL S    S  SS EP++  +I   RSIS++ SS S      K++ R LS+
Sbjct: 1   MLLRSSSTPILNSWPPNSKESSSEPEMVPQILLSRSISLTTSSLSSVEGSSKKMSRALSE 60

Query: 53  GDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSGGLLLDHG 112
            DL++L + K K +         L V+E E    E+     S    +   L  G+  D G
Sbjct: 61  TDLRELSLPKRKPITKTVNRLSSLPVDERE----EEDSCPISR-TASYGGLWWGVGSDAG 115

Query: 113 CGGGARGNGGFL----------GGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAK 162
           C G     G             G  G GDS   + +M+ YY+ MI+A P +AL+L NYA+
Sbjct: 116 CEGVCVEGGSEGGGGSDGGYAHGKSGYGDSNNGNGNMESYYRTMIEANPGNALLLGNYAR 175

Query: 163 FLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222
           FLKE+RGD++KAEEYCGRAILA P DGN+LS++ DLIW  HKD+ RA+SYFD+AV ++PD
Sbjct: 176 FLKEVRGDYIKAEEYCGRAILANPNDGNILSLFADLIWQVHKDSDRAESYFDQAVKASPD 235

Query: 223 D 223
           D
Sbjct: 236 D 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478127|ref|XP_003609349.1| hypothetical protein MTR_4g114690 [Medicago truncatula] gi|355510404|gb|AES91546.1| hypothetical protein MTR_4g114690 [Medicago truncatula]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/253 (43%), Positives = 143/253 (56%), Gaps = 37/253 (14%)

Query: 1   MLLRSASSPIL-----RSCSFRSSPEPDLGMRIHTPRSISMSFSSS----------SIKR 45
           MLLRS+S+P++      + S  SSPEP+   RI   RS+++S SSS          S+ +
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 46  IPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDG----QGEFST------ 95
           + R LS+ DL       +  L   PL  R    +EEE   G  G       FS+      
Sbjct: 61  MTRALSETDL-------SSQLNRKPLHRRQFDEDEEESRTGTFGARSRTASFSSALCSLT 113

Query: 96  -----YNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAY 150
                 +E   R  G +L+    GGG   +    G    GDS   ++S D+YY+ MI+A 
Sbjct: 114 EFEESQSEVDARDGGSMLVLVEEGGGGGFDKNDGGVSRFGDSNHGNDSTDLYYRTMIEAN 173

Query: 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210
           P + L L NYAK+LKE+R D+VKAEEYCGRAILA P DGNVLS+Y DLIW  HKDAPRA+
Sbjct: 174 PGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECHKDAPRAE 233

Query: 211 SYFDRAVHSAPDD 223
           +YFD+AV +APDD
Sbjct: 234 TYFDQAVKAAPDD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492190|gb|AFK34161.1| unknown [Medicago truncatula]

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/253 (43%), Positives = 143/253 (56%), Gaps = 37/253 (14%)

Query: 1   MLLRSASSPIL-----RSCSFRSSPEPDLGMRIHTPRSISMSFSSS----------SIKR 45
           MLLRS+S+P++      + S  SSPEP+   RI   RS+++S SSS          S+ +
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 46  IPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDG----QGEFST------ 95
           + R LS+ DL       +  L   PL  R    +EEE   G  G       FS+      
Sbjct: 61  MTRALSETDL-------SSQLNRKPLHRRQFDEDEEESRTGTFGARSRTASFSSALCSLT 113

Query: 96  -----YNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAY 150
                 +E   R  G +L+    GGG   +    G    GDS   ++S D+YY+ MI+A 
Sbjct: 114 EFEESQSEVDARDGGSMLVLVEEGGGGGFDKNDGGVSRFGDSNHGNDSTDLYYRTMIEAN 173

Query: 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210
           P + L L NYAK+LKE+R D+VKAEEYCGRAILA P DGNVLS+Y DLIW  HKDAPRA+
Sbjct: 174 PGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECHKDAPRAE 233

Query: 211 SYFDRAVHSAPDD 223
           +YFD+AV +APDD
Sbjct: 234 TYFDQAVKAAPDD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442971|ref|XP_002267739.1| PREDICTED: uncharacterized protein LOC100243938 [Vitis vinifera]

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 113/254 (44%), Positives = 141/254 (55%), Gaps = 31/254 (12%)

Query: 1   MLLRSASSPILRSC----SFRSSPEPDLGMRIHTPRSISMS--------------FSSSS 42
           MLLRS+S+PIL S        +SPE DL  +I   +S+S+S               S+ S
Sbjct: 1   MLLRSSSTPILNSWIQPYGKDTSPETDLVHQIPKTKSLSLSASFQSPPHTAPSITTSAGS 60

Query: 43  IKRIPRTLSDGDLQQLHITKT-KTLFNNPLIP--------RDLLVE----EEEGGGGEDG 89
           ++++ R LS+ DL+      T +  F+ P +         R LL      E E  G EDG
Sbjct: 61  LQKMARALSETDLRDPPKRNTHEKWFSPPTVDEGEEQDSIRSLLSSSGLGESERCGVEDG 120

Query: 90  QGEFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKA 149
                          GG+    G G G+ G  G   GGG  +S    ES DVYYQ+MI+A
Sbjct: 121 GPATLEMGGGIRGNGGGIFGGGGYGKGSSGGDGDGHGGGAYESNYGHESTDVYYQKMIEA 180

Query: 150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209
            PE+AL L NYAKFLKE+RGD VKAEEYCGRAIL  P DGNVLS Y DLIW N KDA RA
Sbjct: 181 NPENALFLGNYAKFLKEVRGDLVKAEEYCGRAILVNPSDGNVLSFYADLIWNNQKDAQRA 240

Query: 210 KSYFDRAVHSAPDD 223
           ++YF++AV  APDD
Sbjct: 241 ETYFNQAVRVAPDD 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.388	0.3	0.586	1.3e-34
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.383	0.361	0.643	1.4e-31
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.401	0.295	0.544	1.6e-28
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.366	0.299	0.548	1.3e-20
TAIR|locus:2197768	310	TPR4 "tetratricopeptide repeat	0.361	0.261	0.475	2.2e-15
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.379	0.153	0.366	3.1e-08
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.366	0.152	0.341	1.7e-07

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
 Identities = 51/87 (58%), Positives = 73/87 (83%)

Query:   137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196
             ++ DV+Y++MI+A P + + L+NYAKFLKE+R D++KAEEYCGRAIL  P DGNVL+MY 
Sbjct:   154 DNTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYA 213

Query:   197 DLIWINHKDAPRAKSYFDRAVHSAPDD 223
             +L+W  HKD+ RA++YF++AV +AP+D
Sbjct:   214 ELVWKIHKDSSRAENYFNQAVAAAPED 240

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
 Identities = 56/87 (64%), Positives = 72/87 (82%)

Query:   138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-DGNVLSMYG 196
             S+D YY+EMI+ YP D L+L+NYA+FLKE++GD  KAEEYC RA+L++ G DG +LSMYG
Sbjct:   109 SVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYG 168

Query:   197 DLIWINHKDAPRAKSYFDRAVHSAPDD 223
             DLIW NH D  RA+SY+D+AV S+PDD
Sbjct:   169 DLIWKNHGDGVRAQSYYDQAVQSSPDD 195

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 49/90 (54%), Positives = 65/90 (72%)

Query:   134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS 193
             +  ++ D YY+EMI + P ++L+  NYAKFLKE++GD  KAEEYC RAIL    DGNVLS
Sbjct:   160 RSEDATDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLS 219

Query:   194 MYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
             +Y DLI  NH+D  RA SY+ +AV  +P+D
Sbjct:   220 LYADLILHNHQDRQRAHSYYKQAVKMSPED 249

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query:   142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
             YY+EM+++ P ++L+L NY KFL E+  D   AEEY GRAIL  PGDG  LSMYG LIW 
Sbjct:   153 YYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWE 212

Query:   202 NHKDAPRAKSYFDRAVHSAPDD 223
               +D  RA+ YFD+AV+++P+D
Sbjct:   213 TKRDEKRAQGYFDQAVNASPND 234

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 39/82 (47%), Positives = 54/82 (65%)

Query:   142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
             YY+ M++ YP   L+L NYAKFL E +GD   AEEY  +  + +P DG  L+ YG L+  
Sbjct:   124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 182

Query:   202 NHKDAPRAKSYFDRAVHSAPDD 223
              H+D  +A SYF+RAV ++PDD
Sbjct:   183 LHQDEAKAMSYFERAVQASPDD 204

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 33/90 (36%), Positives = 48/90 (53%)

Query:   137 ESMDVY-----YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV 191
             ESMD +     YQ  +   P + L+LANYA+FL  I  D+ +AE+Y  RA  A+P D   
Sbjct:   428 ESMDYFKTELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEA 487

Query:   192 LSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221
             L+ Y   +W    D  RA+  +  A+ + P
Sbjct:   488 LNKYATFLWRARNDIWRAEETYLEAISADP 517

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 28/82 (34%), Positives = 42/82 (51%)

Query:   140 DVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI 199
             ++ YQ  +   P + L+LANYA+FL  +  D  +AEEY  RA+  +P D    S Y   +
Sbjct:   421 ELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATFL 480

Query:   200 WINHKDAPRAKSYFDRAVHSAP 221
             W    D   A+  F  A+ + P
Sbjct:   481 WRARDDLWAAEETFLEAIDADP 502


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      224       168   0.00079  108 3  11 22  0.39    32
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  153 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.01u 0.20s 13.21t   Elapsed:  00:00:01
  Total cpu time:  13.01u 0.20s 13.21t   Elapsed:  00:00:01
  Start:  Fri May 10 13:45:31 2013   End:  Fri May 10 13:45:32 2013

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016915001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (274 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-04

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           YY++ ++  P++A    N A    +  G + +A E   +A+   P +       G   + 
Sbjct: 22  YYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80

Query: 202 NHKDAPRAKSYFDRAVHSAPD 222
             K    A   +++A+   P+
Sbjct: 81  LGKY-EEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211
           ++A  L N    L +  GD+ +A E   +A+   P +               KD   A  
Sbjct: 1   DNAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59

Query: 212 YFDRAVHSAP 221
             ++A+   P
Sbjct: 60  DLEKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP 186
            Y++ ++  P++A    N A    ++  D+ +A E   +A+   P
Sbjct: 25  AYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
           YQ ++K  P++A+VL N A    E      +A EY  RA+   P    +L   G  + + 
Sbjct: 793 YQTVVKKAPDNAVVLNNLAWLYLE--LKDPRALEYAERALKLAPNIPAILDTLG-WLLVE 849

Query: 203 HKDAPRAKSYFDRAVHSAPDD 223
             +A RA     +AV+ AP+ 
Sbjct: 850 KGEADRALPLLRKAVNIAPEA 870

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PRK15359	144	type III secretion system chaperone protein SscB;	99.54
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.38
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.37
PRK11189	296	lipoprotein NlpI; Provisional	99.36
KOG0553	304	consensus TPR repeat-containing protein [General f	99.36
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.33
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.32
PRK12370	553	invasion protein regulator; Provisional	99.29
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.28
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.27
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.24
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.23
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.21
PRK15359	144	type III secretion system chaperone protein SscB;	99.2
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.15
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.14
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.13
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.12
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.1
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.09
KOG1126	638	consensus DNA-binding cell division cycle control	99.09
PRK12370	553	invasion protein regulator; Provisional	99.08
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.06
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.05
KOG1126	638	consensus DNA-binding cell division cycle control	99.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.04
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.03
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.01
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.99
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.97
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.96
PRK11189	296	lipoprotein NlpI; Provisional	98.94
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.92
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.92
KOG1125	579	consensus TPR repeat-containing protein [General f	98.92
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.87
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.86
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.86
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.86
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.84
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.81
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.8
PRK11906	458	transcriptional regulator; Provisional	98.8
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.8
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.79
PF13371	73	TPR_9: Tetratricopeptide repeat	98.78
PRK10803	263	tol-pal system protein YbgF; Provisional	98.77
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.76
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.76
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.76
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.72
KOG1125	579	consensus TPR repeat-containing protein [General f	98.69
PF13371	73	TPR_9: Tetratricopeptide repeat	98.68
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.68
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.66
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.66
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.64
PRK15331	165	chaperone protein SicA; Provisional	98.63
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.61
PLN02789	320	farnesyltranstransferase	98.6
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.6
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.59
PRK11906	458	transcriptional regulator; Provisional	98.59
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.58
PLN02789	320	farnesyltranstransferase	98.57
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.56
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.52
KOG2076	895	consensus RNA polymerase III transcription factor	98.52
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.52
PF12688	120	TPR_5: Tetratrico peptide repeat	98.51
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.51
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.5
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.49
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.44
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.43
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.41
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.41
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.4
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.39
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.37
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.37
PRK14574	822	hmsH outer membrane protein; Provisional	98.36
PF13431	34	TPR_17: Tetratricopeptide repeat	98.36
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.35
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.34
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.33
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.33
PF13428	44	TPR_14: Tetratricopeptide repeat	98.31
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.28
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.23
KOG0553	304	consensus TPR repeat-containing protein [General f	98.22
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.18
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.16
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.13
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.13
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.12
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.1
PRK14574	822	hmsH outer membrane protein; Provisional	98.1
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.1
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.09
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.08
KOG2003	840	consensus TPR repeat-containing protein [General f	98.07
PF13431	34	TPR_17: Tetratricopeptide repeat	98.06
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.05
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.05
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.05
KOG1129	478	consensus TPR repeat-containing protein [General f	98.04
KOG4234	271	consensus TPR repeat-containing protein [General f	98.0
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.98
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.98
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.98
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.95
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.93
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.93
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.91
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.91
PF12688	120	TPR_5: Tetratrico peptide repeat	97.9
PF13512	142	TPR_18: Tetratricopeptide repeat	97.9
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.9
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.88
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.88
KOG4555	175	consensus TPR repeat-containing protein [Function	97.86
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.86
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.85
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.85
PRK15331	165	chaperone protein SicA; Provisional	97.83
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.82
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.78
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.78
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.78
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.78
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.77
PRK10803	263	tol-pal system protein YbgF; Provisional	97.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.73
KOG1129	478	consensus TPR repeat-containing protein [General f	97.72
KOG2076	895	consensus RNA polymerase III transcription factor	97.71
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.7
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.65
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.63
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.61
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.58
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.51
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.51
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.49
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.46
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.44
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.42
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.41
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.4
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.39
KOG2003	840	consensus TPR repeat-containing protein [General f	97.37
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.32
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.32
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.29
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.18
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.16
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.15
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.15
PF13428	44	TPR_14: Tetratricopeptide repeat	97.14
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.11
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.11
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.08
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.0
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.98
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.98
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.98
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.98
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.91
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.9
PF13512	142	TPR_18: Tetratricopeptide repeat	96.82
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.8
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.79
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.69
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.63
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.63
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.58
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.58
KOG4555	175	consensus TPR repeat-containing protein [Function	96.5
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.5
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.5
PRK04841	903	transcriptional regulator MalT; Provisional	96.48
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.41
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.36
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.27
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.25
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.22
KOG1310	758	consensus WD40 repeat protein [General function pr	96.2
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.18
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.18
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.17
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.14
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.1
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.09
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.07
PRK10941	269	hypothetical protein; Provisional	96.05
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.05
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.03
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.0
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.97
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.97
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.93
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.9
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.88
PLN03077	857	Protein ECB2; Provisional	95.87
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.86
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.86
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.82
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.8
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.77
PRK04841	903	transcriptional regulator MalT; Provisional	95.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.63
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.58
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.56
PLN03077	857	Protein ECB2; Provisional	95.56
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.56
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.53
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.46
PLN03218	1060	maturation of RBCL 1; Provisional	95.38
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.26
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.22
PLN03218	1060	maturation of RBCL 1; Provisional	95.2
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.12
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.05
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.01
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.98
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.96
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.8
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.76
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.74
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.56
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.53
KOG2376	652	consensus Signal recognition particle, subunit Srp	94.5
KOG4234	271	consensus TPR repeat-containing protein [General f	94.33
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.32
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.29
KOG1585	308	consensus Protein required for fusion of vesicles	94.26
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.23
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.22
PRK10941	269	hypothetical protein; Provisional	94.17
KOG2376	652	consensus Signal recognition particle, subunit Srp	94.13
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.11
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	94.03
KOG2047	835	consensus mRNA splicing factor [RNA processing and	93.99
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.98
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.92
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.86
KOG3364	149	consensus Membrane protein involved in organellar	93.72
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.63
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.58
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	93.5
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.17
COG4455	273	ImpE Protein of avirulence locus involved in tempe	93.12
KOG4340	459	consensus Uncharacterized conserved protein [Funct	93.06
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.98
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.74
KOG3364	149	consensus Membrane protein involved in organellar	92.73
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.7
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.49
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	92.39
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.38
KOG1586	288	consensus Protein required for fusion of vesicles	92.18
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.13
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.0
KOG1586	288	consensus Protein required for fusion of vesicles	91.83
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	91.76
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.32
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.08
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.07
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.65
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	90.62
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	90.61
COG2912	269	Uncharacterized conserved protein [Function unknow	90.52
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.38
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.38
KOG1258	577	consensus mRNA processing protein [RNA processing	90.16
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.98
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.64
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.54
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.52
KOG4014	248	consensus Uncharacterized conserved protein (conta	89.32
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	88.89
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	88.78
KOG4507	886	consensus Uncharacterized conserved protein, conta	88.43
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.36
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	88.2
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	87.26
KOG0529	421	consensus Protein geranylgeranyltransferase type I	87.2
KOG2471	696	consensus TPR repeat-containing protein [General f	86.98
COG3629	280	DnrI DNA-binding transcriptional activator of the	86.88
KOG2047	835	consensus mRNA splicing factor [RNA processing and	86.52
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	85.95
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	85.94
KOG1258	577	consensus mRNA processing protein [RNA processing	85.89
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	85.65
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.91
TIGR02996	42	rpt_mate_G_obs repeat-companion domain TIGR02996.	84.65
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	84.3
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	84.28
COG3118	304	Thioredoxin domain-containing protein [Posttransla	84.03
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	83.73
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	83.3
COG2912	269	Uncharacterized conserved protein [Function unknow	83.26
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	82.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	82.26
KOG2300	629	consensus Uncharacterized conserved protein [Funct	82.02
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.8
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	81.52
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	80.91
KOG4014	248	consensus Uncharacterized conserved protein (conta	80.73
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	80.36
COG3898	531	Uncharacterized membrane-bound protein [Function u	80.26

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.54  E-value=7.3e-14  Score=112.93  Aligned_cols=89  Identities=12%  Similarity=0.133  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|..+|++++..+|.++.+++++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+..
T Consensus        37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~  114 (144)
T PRK15359         37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREA  114 (144)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHH
Confidence            378999999999999999999999999999987 69999999999999999999999999999998865 6899999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++|++++|++
T Consensus       115 ~~~Al~~~p~~  125 (144)
T PRK15359        115 FQTAIKMSYAD  125 (144)
T ss_pred             HHHHHHhCCCC
Confidence            99999999986

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.38  E-value=5.6e-12  Score=116.11  Aligned_cols=89  Identities=20%  Similarity=0.206  Sum_probs=84.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|++||+++|+++.+++++|.++. ..|++++|+.+|++||.++|+++.+++.+|.+++. .|++++|+.+
T Consensus        15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~~   92 (356)
T PLN03088         15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKAA   92 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHHH
Confidence            369999999999999999999999999999987 69999999999999999999999999999988876 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++|++++|++
T Consensus        93 ~~~al~l~P~~  103 (356)
T PLN03088         93 LEKGASLAPGD  103 (356)
T ss_pred             HHHHHHhCCCC
Confidence            99999999986

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.37  E-value=8e-12  Score=97.23  Aligned_cols=88  Identities=11%  Similarity=0.078  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|..+|++++..+|.++.++.++|.++. .+|++++|+.+|+++++.+|.++.++..+|.+++. .+++++|+.+|
T Consensus        31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  108 (135)
T TIGR02552        31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPESALKAL  108 (135)
T ss_pred             ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999987 68999999999999999999999999999998876 57999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       109 ~~al~~~p~~  118 (135)
T TIGR02552       109 DLAIEICGEN  118 (135)
T ss_pred             HHHHHhcccc
Confidence            9999999976

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.36  E-value=8.8e-12  Score=111.53  Aligned_cols=89  Identities=13%  Similarity=0.072  Sum_probs=83.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+..|++|++.+|+++.+++++|.++. ..|++++|++.|++|++++|++..++.++|.+++. .|++++|+..
T Consensus        77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~  154 (296)
T PRK11189         77 LGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQDD  154 (296)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            368999999999999999999999999999887 69999999999999999999999999999988865 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |+++++++|++
T Consensus       155 ~~~al~~~P~~  165 (296)
T PRK11189        155 LLAFYQDDPND  165 (296)
T ss_pred             HHHHHHhCCCC
Confidence            99999999986

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.36  E-value=2.9e-12  Score=115.41  Aligned_cols=89  Identities=20%  Similarity=0.251  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .++|.+|+..|.+||+++|.|+.+|-|-|.+|. ..|.++.|++-+++||.+||++..+|..||.+++. .|++++|++.
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~a  171 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIEA  171 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHHH
Confidence            379999999999999999999999999999987 69999999999999999999999999999999876 5789999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++||.++|++
T Consensus       172 ykKaLeldP~N  182 (304)
T KOG0553|consen  172 YKKALELDPDN  182 (304)
T ss_pred             HHhhhccCCCc
Confidence            99999999986

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.35  E-value=1.3e-11  Score=105.01  Aligned_cols=89  Identities=13%  Similarity=0.203  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD--FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd--~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      ++++.|+.+|++|++++|+++.++.++|.+++...|+  +++|+++|++|++.+|++..+++++|..++. .|++++|+.
T Consensus        87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~~~Ai~  165 (198)
T PRK10370         87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADYAQAIE  165 (198)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCHHHHHH
Confidence            5777777777777777777777777777765334555  4777777777777777777777777776654 567777777


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      +|+++++++|.+
T Consensus       166 ~~~~aL~l~~~~  177 (198)
T PRK10370        166 LWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHhhCCCC
Confidence            777777777653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.33  E-value=7.2e-12  Score=87.68  Aligned_cols=68  Identities=25%  Similarity=0.296  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 027404          152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK-DAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       152 ~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g-d~eeA~~~ferAL~l~P  221 (224)
                      .++.+|..+|.++. ..+++++|+.+|++||+++|+++.++.++|.+++.+ + ++++|+.+|++|++++|
T Consensus         1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL-GKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHcCc
Confidence            46899999999998 699999999999999999999999999999998764 6 79999999999999998

...

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.32  E-value=2.6e-11  Score=103.23  Aligned_cols=90  Identities=14%  Similarity=0.261  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--hHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD--APRAK  210 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd--~eeA~  210 (224)
                      .++.++++..|+++|+.+|+|++.|..+|.++. ..|++++|+.+|++|++++|+++.++..+|.+++...++  +++|+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            467899999999999999999999999999887 799999999999999999999999999999987555566  59999


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      ..|+++++++|++
T Consensus       131 ~~l~~al~~dP~~  143 (198)
T PRK10370        131 EMIDKALALDANE  143 (198)
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999999986

>PRK12370 invasion protein regulator; Provisional

Probab=99.29  E-value=2.6e-11  Score=117.14  Aligned_cols=90  Identities=10%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      ..+++++|+.++++|++++|+++.++..+|.++. .+|++++|+++|++|++++|+++.++..+|.++.. .|++++|+.
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~  393 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQ  393 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence            3457899999999999999999999999999887 69999999999999999999999999999988765 689999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      +|++|++++|++
T Consensus       394 ~~~~Al~l~P~~  405 (553)
T PRK12370        394 TINECLKLDPTR  405 (553)
T ss_pred             HHHHHHhcCCCC
Confidence            999999999985

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.28  E-value=4e-11  Score=99.57  Aligned_cols=87  Identities=11%  Similarity=-0.066  Sum_probs=81.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      -.|++++|+..|+-++.+||.++..|++||.++. .+|++++|+.+|.+|+.++|+|+.++.++|.+++. .|+.+.|..
T Consensus        47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A~~  124 (157)
T PRK15363         47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYAIK  124 (157)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHH
Confidence            3489999999999999999999999999999886 79999999999999999999999999999999876 578999999


Q ss_pred             HHHHHHHhC
Q 027404          212 YFDRAVHSA  220 (224)
Q Consensus       212 ~ferAL~l~  220 (224)
                      .|+.|+...
T Consensus       125 aF~~Ai~~~  133 (157)
T PRK15363        125 ALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHh
Confidence            999999865

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.27  E-value=3e-11  Score=105.88  Aligned_cols=83  Identities=20%  Similarity=0.299  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++..|.+.+++||+.||++..+|..+|.++. ..|+.+.|.+.|++|+.++|++.++++|||.+++.+ |++++|..+|
T Consensus        49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q-g~~~eA~q~F  126 (250)
T COG3063          49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ-GRPEEAMQQF  126 (250)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC-CChHHHHHHH
Confidence            68888888888888888888888888887664 788888888888888888888888888888888764 4777777777


Q ss_pred             HHHHH
Q 027404          214 DRAVH  218 (224)
Q Consensus       214 erAL~  218 (224)
                      ++|+.
T Consensus       127 ~~Al~  131 (250)
T COG3063         127 ERALA  131 (250)
T ss_pred             HHHHh
Confidence            77775

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.24  E-value=3.7e-11  Score=105.25  Aligned_cols=87  Identities=25%  Similarity=0.339  Sum_probs=78.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~  210 (224)
                      ++.+.|.+.|++|+.++|++.++++|||.||+ .+|++++|.++|++|+. +|.+   +..+.|+|.|.+. .|+++.|.
T Consensus        83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~-~gq~~~A~  159 (250)
T COG3063          83 GENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALK-AGQFDQAE  159 (250)
T ss_pred             CChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhh-cCCchhHH
Confidence            78899999999999999999999999999999 69999999999999995 4654   5678899987765 57899999


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      ++|+++++++|+.
T Consensus       160 ~~l~raL~~dp~~  172 (250)
T COG3063         160 EYLKRALELDPQF  172 (250)
T ss_pred             HHHHHHHHhCcCC
Confidence            9999999999985

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.23  E-value=4.9e-11  Score=116.24  Aligned_cols=87  Identities=16%  Similarity=0.238  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |.++.|+..|+|||+++|+.++++.|+|+++.+ .|+..+|+.||.+|+.+.|+++++++++|+++.++ +.+++|..+|
T Consensus       300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~-~~~e~A~~ly  377 (966)
T KOG4626|consen  300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ-GKIEEATRLY  377 (966)
T ss_pred             ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-ccchHHHHHH
Confidence            688999999999999999999999999999984 89999999999999999999999999999887664 5677777777


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      ++|+++.|+
T Consensus       378 ~~al~v~p~  386 (966)
T KOG4626|consen  378 LKALEVFPE  386 (966)
T ss_pred             HHHHhhChh
Confidence            777777774

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.23  E-value=1.5e-10  Score=79.31  Aligned_cols=88  Identities=17%  Similarity=0.215  Sum_probs=80.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|+++++.+|.+..++..+|.++. ..+++++|+.+|++++...|.+..++..++.++.. .+++++|..+
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~   90 (100)
T cd00189          13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEALEA   90 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHHHH
Confidence            368999999999999999999999999999987 68999999999999999999999999999988766 4789999999


Q ss_pred             HHHHHHhCCC
Q 027404          213 FDRAVHSAPD  222 (224)
Q Consensus       213 ferAL~l~P~  222 (224)
                      +++++++.|+
T Consensus        91 ~~~~~~~~~~  100 (100)
T cd00189          91 YEKALELDPN  100 (100)
T ss_pred             HHHHHccCCC
Confidence            9999999884

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.21  E-value=3.9e-11  Score=116.90  Aligned_cols=88  Identities=23%  Similarity=0.222  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+.||+++|..++++.|+|..+. .+|+..+|+++|.|||.++|..++++.++|.++.+ .|+..+|+..|
T Consensus       402 gnl~~Ai~~YkealrI~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD-sGni~~AI~sY  479 (966)
T KOG4626|consen  402 GNLDDAIMCYKEALRIKPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD-SGNIPEAIQSY  479 (966)
T ss_pred             ccHHHHHHHHHHHHhcCchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc-cCCcHHHHHHH
Confidence            56677777777777777777777777777766 46777777777777777777777777777765544 46677777777


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +.|++++|+.
T Consensus       480 ~~aLklkPDf  489 (966)
T KOG4626|consen  480 RTALKLKPDF  489 (966)
T ss_pred             HHHHccCCCC
Confidence            7777777763

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.20  E-value=1.1e-10  Score=94.38  Aligned_cols=80  Identities=13%  Similarity=0.130  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (224)
Q Consensus       139 A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~  218 (224)
                      -+.+|++||+++|++   ++++|.++. ..|++++|+.+|++++.++|.+..+|..+|.++.. .|++++|+.+|++|++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence            467999999999986   567788887 69999999999999999999999999999998765 5789999999999999


Q ss_pred             hCCCC
Q 027404          219 SAPDD  223 (224)
Q Consensus       219 l~P~d  223 (224)
                      ++|++
T Consensus        87 l~p~~   91 (144)
T PRK15359         87 LDASH   91 (144)
T ss_pred             cCCCC
Confidence            99986

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.15  E-value=1e-09  Score=82.33  Aligned_cols=89  Identities=15%  Similarity=0.184  Sum_probs=80.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCh
Q 027404          133 GKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDA  206 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~  206 (224)
                      .+++++|+.+|+++++.+|++   +.+++.+|.++. ..|++++|+.+|++++...|++   +.++..+|.++.. .+++
T Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~   92 (119)
T TIGR02795        15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-LGDK   92 (119)
T ss_pred             cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-hCCh
Confidence            478999999999999999987   578999999987 6999999999999999999885   6788889988766 5789


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027404          207 PRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       207 eeA~~~ferAL~l~P~d  223 (224)
                      ++|+.+|+++++..|++
T Consensus        93 ~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        93 EKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHHHHHHHCcCC
Confidence            99999999999999975

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.14  E-value=4.1e-10  Score=115.98  Aligned_cols=88  Identities=14%  Similarity=0.121  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++|++++|+++.++.++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+.+|
T Consensus       623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~eA~~~l  700 (987)
T PRK09782        623 HNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMAATQHYA  700 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            57777777777777777777777777777766 47777777777777777777777777777776644 46777777777


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|+.
T Consensus       701 ~~Al~l~P~~  710 (987)
T PRK09782        701 RLVIDDIDNQ  710 (987)
T ss_pred             HHHHhcCCCC
Confidence            7777777764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.13  E-value=5.5e-10  Score=108.66  Aligned_cols=88  Identities=18%  Similarity=0.148  Sum_probs=70.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++||+++|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.+++. .|++++|+.+|
T Consensus       345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  422 (615)
T TIGR00990       345 GKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAGKDY  422 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            67888888888888888888888888887776 57888888888888888888888888888877655 46788888888


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       423 ~kal~l~P~~  432 (615)
T TIGR00990       423 QKSIDLDPDF  432 (615)
T ss_pred             HHHHHcCccC
Confidence            8888888864

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.12  E-value=2.8e-10  Score=78.93  Aligned_cols=64  Identities=22%  Similarity=0.400  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          158 ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       158 ~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.+|..++ ..|++++|+++|+++++.+|+++.++..+|.+++. .|++++|+.+|+++++++|++
T Consensus         1 ~~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence            35677777 59999999999999999999999999999998875 678999999999999999986

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.10  E-value=9.5e-10  Score=106.99  Aligned_cols=88  Identities=16%  Similarity=0.206  Sum_probs=68.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++||+.+|+++.+++++|.++. ..|++++|+.+|++|++++|++..++..+|.++.. .|++++|+.+|
T Consensus       379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~  456 (615)
T TIGR00990       379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIASSMATF  456 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            57788888888888888888888888887776 57888888888888888888887777777776654 46777777777


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++..|++
T Consensus       457 ~~al~~~P~~  466 (615)
T TIGR00990       457 RRCKKNFPEA  466 (615)
T ss_pred             HHHHHhCCCC
Confidence            7777777764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.09  E-value=6.7e-10  Score=86.34  Aligned_cols=81  Identities=15%  Similarity=0.074  Sum_probs=75.6

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 027404          141 VYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       141 ~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~  220 (224)
                      ++|+++++.+|++..+.+.+|.++. ..|++++|+++|++++..+|+++.++..+|.++... +++++|+.+|+++++++
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999987 699999999999999999999999999999988764 78999999999999999


Q ss_pred             CCC
Q 027404          221 PDD  223 (224)
Q Consensus       221 P~d  223 (224)
                      |++
T Consensus        82 p~~   84 (135)
T TIGR02552        82 PDD   84 (135)
T ss_pred             CCC
Confidence            976

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=6.1e-11  Score=115.47  Aligned_cols=87  Identities=18%  Similarity=0.166  Sum_probs=44.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++++.|+++|+|||++||+++.++..+|.=+. .+.++++|..||++||.++|.|..||+-+|.++.. .++++.|+-.|
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek~e~Ae~~f  512 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEKLEFAEFHF  512 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cchhhHHHHHH
Confidence            45555555555555555555555555544333 34455555555555555555555555555554433 23445555555


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      ++|+.+||.
T Consensus       513 qkA~~INP~  521 (638)
T KOG1126|consen  513 QKAVEINPS  521 (638)
T ss_pred             HhhhcCCcc
Confidence            555555554

>PRK12370 invasion protein regulator; Provisional

Probab=99.08  E-value=1.2e-09  Score=105.58  Aligned_cols=88  Identities=14%  Similarity=0.031  Sum_probs=77.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|++|++++|+++.+++++|.++. ..|++++|+.+|++|++++|.++.++..++.+++. .+++++|+.+
T Consensus       351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~~  428 (553)
T PRK12370        351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAIRL  428 (553)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHHHH
Confidence            378999999999999999999999999999987 69999999999999999999998876666655554 5789999999


Q ss_pred             HHHHHHhC-CC
Q 027404          213 FDRAVHSA-PD  222 (224)
Q Consensus       213 ferAL~l~-P~  222 (224)
                      ++++++.+ |+
T Consensus       429 ~~~~l~~~~p~  439 (553)
T PRK12370        429 GDELRSQHLQD  439 (553)
T ss_pred             HHHHHHhcccc
Confidence            99999875 44

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.06  E-value=3e-09  Score=86.28  Aligned_cols=84  Identities=24%  Similarity=0.407  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.++..+|.++. .+|++++|+++|+++++.+|++..++.+++.++.. .+++++|+.+|
T Consensus        45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~  122 (234)
T TIGR02521        45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQF  122 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHHHHHHHH
Confidence            67888888888888888888888888888776 58888888888888888888888888777776654 46777777777


Q ss_pred             HHHHHh
Q 027404          214 DRAVHS  219 (224)
Q Consensus       214 erAL~l  219 (224)
                      ++++..
T Consensus       123 ~~~~~~  128 (234)
T TIGR02521       123 EQAIED  128 (234)
T ss_pred             HHHHhc
Confidence            777764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.05  E-value=1.8e-09  Score=111.29  Aligned_cols=87  Identities=20%  Similarity=0.252  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++|++++|+ +.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+++|
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            7999999999999999996 999999999887 69999999999999999999999999999988766 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|++
T Consensus       667 ~~AL~l~P~~  676 (987)
T PRK09782        667 ERAHKGLPDD  676 (987)
T ss_pred             HHHHHhCCCC
Confidence            9999999986

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=3e-10  Score=110.74  Aligned_cols=89  Identities=15%  Similarity=0.184  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      .+++.|..+|++||..||.|..+|+.+|.++. ++++++.|+-+|++|+++||.+...+..+|.++.. .|+.++|+.+|
T Consensus       469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~  546 (638)
T KOG1126|consen  469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLY  546 (638)
T ss_pred             HHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHH
Confidence            68999999999999999999999999999987 79999999999999999999999999999988755 57899999999


Q ss_pred             HHHHHhCCCCC
Q 027404          214 DRAVHSAPDDW  224 (224)
Q Consensus       214 erAL~l~P~d~  224 (224)
                      ++|+.++|.|.
T Consensus       547 ~~A~~ld~kn~  557 (638)
T KOG1126|consen  547 EKAIHLDPKNP  557 (638)
T ss_pred             HHHHhcCCCCc
Confidence            99999999863

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.04  E-value=6.8e-10  Score=81.11  Aligned_cols=81  Identities=16%  Similarity=0.243  Sum_probs=71.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~--na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      .++++.|+.+|+++++.+|.  +..+++.+|.+++ ..|++++|+.++++ +..+|.+...+..+|.+++.+ +++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l-~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL-GKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT-T-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh-CCHHHHH
Confidence            36899999999999999995  5678888999998 69999999999999 889999989988999998875 7899999


Q ss_pred             HHHHHH
Q 027404          211 SYFDRA  216 (224)
Q Consensus       211 ~~ferA  216 (224)
                      ..|++|
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999986

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.03  E-value=2.9e-09  Score=87.63  Aligned_cols=88  Identities=22%  Similarity=0.302  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-----
Q 027404          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD-----  205 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd-----  205 (224)
                      +++++|+.+|++|++++|+.   +.+++++|.++. ..|++++|+.+|++|+..+|++..++..+|.++... ++     
T Consensus        49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~a~  126 (172)
T PRK02603         49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR-GEKAEEA  126 (172)
T ss_pred             CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHhHh
Confidence            79999999999999988764   478999999887 699999999999999999999999999999887653 34     


Q ss_pred             ---------hHHHHHHHHHHHHhCCCC
Q 027404          206 ---------APRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       206 ---------~eeA~~~ferAL~l~P~d  223 (224)
                               +++|++++++++.++|++
T Consensus       127 ~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        127 GDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                     678889999999999975

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.01  E-value=7e-09  Score=84.05  Aligned_cols=88  Identities=25%  Similarity=0.351  Sum_probs=55.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld--P~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +++++|+.+|+++++.+|.++.++.++|.++. .+|++++|+++|++++...  |....++..+|.+++. .+++++|+.
T Consensus        79 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~  156 (234)
T TIGR02521        79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGDFDKAEK  156 (234)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCCHHHHHH
Confidence            46677777777777777777777777766665 4666666666666666543  3344555556655544 356666666


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      +|+++++.+|++
T Consensus       157 ~~~~~~~~~~~~  168 (234)
T TIGR02521       157 YLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHhCcCC
Confidence            666666666643

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.99  E-value=7.3e-09  Score=84.66  Aligned_cols=89  Identities=21%  Similarity=0.249  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------HcC
Q 027404          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI------NHK  204 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~------~~g  204 (224)
                      +++++|+.+|++|+.+.|++   +.++.++|.++. ..|++++|+++|++|+.++|.+...+.++|.++..      ..|
T Consensus        49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g  127 (168)
T CHL00033         49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG  127 (168)
T ss_pred             CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence            68999999999999997764   468999999887 69999999999999999999999999999988762      235


Q ss_pred             ChH-------HHHHHHHHHHHhCCCC
Q 027404          205 DAP-------RAKSYFDRAVHSAPDD  223 (224)
Q Consensus       205 d~e-------eA~~~ferAL~l~P~d  223 (224)
                      +++       +|+.+|++++..+|++
T Consensus       128 ~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        128 DSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            555       6677777788888854

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.97  E-value=5.3e-09  Score=103.38  Aligned_cols=82  Identities=15%  Similarity=0.129  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (224)
Q Consensus       139 A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~  218 (224)
                      |+.+|++|++++|+++.++.++|.++. .+|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+..|+++++
T Consensus       269 A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~~eA~~~l~~al~  346 (656)
T PRK15174        269 AAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQYTAASDEFVQLAR  346 (656)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence            444444444444444444444444443 34444444444444444444444444444444433 3444555555544444


Q ss_pred             hCCC
Q 027404          219 SAPD  222 (224)
Q Consensus       219 l~P~  222 (224)
                      .+|+
T Consensus       347 ~~P~  350 (656)
T PRK15174        347 EKGV  350 (656)
T ss_pred             hCcc
Confidence            4443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.97  E-value=4.7e-09  Score=104.75  Aligned_cols=88  Identities=8%  Similarity=0.062  Sum_probs=71.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +.+++|+.+++++++.+|++..++.+++.++. +++++++|+..+++++..+|+++.++..+|.++.+ .|++++|+++|
T Consensus       100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~~y  177 (694)
T PRK15179        100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADACF  177 (694)
T ss_pred             CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHHHH
Confidence            67788888888888888888888888888887 57888888888888888888888888888877654 46788888888


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++.+|++
T Consensus       178 ~~~~~~~p~~  187 (694)
T PRK15179        178 ERLSRQHPEF  187 (694)
T ss_pred             HHHHhcCCCc
Confidence            8888877753

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.96  E-value=1.4e-09  Score=75.34  Aligned_cols=56  Identities=16%  Similarity=0.277  Sum_probs=51.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG  189 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da  189 (224)
                      .+++++|+.+|+++++.+|+++.+++.+|.++. .+|++++|+.+|+++++++|+++
T Consensus        10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            368999999999999999999999999999998 69999999999999999999986

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.94  E-value=1.2e-08  Score=91.43  Aligned_cols=88  Identities=11%  Similarity=0.073  Sum_probs=73.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+..|++||+++|+++.++.++|.+++ ..|++++|+++|+++++++|+++.....+  .+....+++++|+..
T Consensus       111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~~~~~~~--~l~~~~~~~~~A~~~  187 (296)
T PRK11189        111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDPYRALWL--YLAESKLDPKQAKEN  187 (296)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHccCCHHHHHHH
Confidence            379999999999999999999999999999987 69999999999999999999998532222  223345789999999


Q ss_pred             HHHHHHh-CCCC
Q 027404          213 FDRAVHS-APDD  223 (224)
Q Consensus       213 ferAL~l-~P~d  223 (224)
                      |++++.. +|+.
T Consensus       188 l~~~~~~~~~~~  199 (296)
T PRK11189        188 LKQRYEKLDKEQ  199 (296)
T ss_pred             HHHHHhhCCccc
Confidence            9877654 4443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.94  E-value=1.8e-09  Score=94.72  Aligned_cols=89  Identities=21%  Similarity=0.251  Sum_probs=56.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |+.++|+.+|++||+.+|+|+.++..+++++. ..|++++|.+.+++..+..|.++..+..+|.++..+ |++++|+.+|
T Consensus       160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~  237 (280)
T PF13429_consen  160 GDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYL  237 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-cccccccccc
Confidence            45666666666666666666666666666554 356666666666665555556656656666655543 6889999999


Q ss_pred             HHHHHhCCCCC
Q 027404          214 DRAVHSAPDDW  224 (224)
Q Consensus       214 erAL~l~P~d~  224 (224)
                      +++++.+|+|+
T Consensus       238 ~~~~~~~p~d~  248 (280)
T PF13429_consen  238 EKALKLNPDDP  248 (280)
T ss_dssp             HHHHHHSTT-H
T ss_pred             ccccccccccc
Confidence            99999888763

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.93  E-value=9e-09  Score=101.76  Aligned_cols=88  Identities=11%  Similarity=0.096  Sum_probs=59.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVK----AEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~ee----Ae~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      +++++|+..|+++++.+|+++.+++++|.++. ..|++++    |+.+|++|++++|+++.++..+|.++.. .|++++|
T Consensus       226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA  303 (656)
T PRK15174        226 GKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNEKA  303 (656)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            56677777777777777777777777776665 4666664    6777777777777777777777666544 4567777


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      +.+|+++++++|++
T Consensus       304 ~~~l~~al~l~P~~  317 (656)
T PRK15174        304 IPLLQQSLATHPDL  317 (656)
T ss_pred             HHHHHHHHHhCCCC
Confidence            77777777776654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.92  E-value=3.3e-09  Score=73.68  Aligned_cols=64  Identities=13%  Similarity=0.197  Sum_probs=57.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~  197 (224)
                      .+++++|+.+|+++++.+|+++.+++.+|.++. .+|++++|++++++++..+|+++.++..++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            368999999999999999999999999999998 6999999999999999999999888776654

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.92  E-value=2.9e-09  Score=74.35  Aligned_cols=53  Identities=23%  Similarity=0.266  Sum_probs=50.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKP  186 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G-d~eeAe~~~erAL~ldP  186 (224)
                      .+++++|+.+|.+||+.+|+++.+++++|.++. .+| ++++|+++|++||+++|
T Consensus        16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence            378999999999999999999999999999987 688 79999999999999998

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=2e-09  Score=103.86  Aligned_cols=87  Identities=16%  Similarity=0.059  Sum_probs=64.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++|++|+.+|+.||..+|+|...|+.||..+. .-.+.++|+..|.||+++.|++..++++||..+.. .|.|+||+.+|
T Consensus       444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~ykEA~~hl  521 (579)
T KOG1125|consen  444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGAYKEAVKHL  521 (579)
T ss_pred             hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhhHHHHHHHH
Confidence            67777777777777777777777777777665 45667777777777777777777777777766543 46777777777


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      =.||.+.+.
T Consensus       522 L~AL~mq~k  530 (579)
T KOG1125|consen  522 LEALSMQRK  530 (579)
T ss_pred             HHHHHhhhc
Confidence            777776554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.91  E-value=1.1e-08  Score=102.23  Aligned_cols=86  Identities=13%  Similarity=-0.011  Sum_probs=80.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +.+++|...++++++.+|+++.+++.+|.++. ..|++++|+++|+++++.+|+++.++..+|.++.. .|+.++|...|
T Consensus       134 ~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G~~~~A~~~~  211 (694)
T PRK15179        134 QGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RGALWRARDVL  211 (694)
T ss_pred             ccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            79999999999999999999999999999997 69999999999999999999999999999998765 68999999999


Q ss_pred             HHHHHhCC
Q 027404          214 DRAVHSAP  221 (224)
Q Consensus       214 erAL~l~P  221 (224)
                      ++|+++..
T Consensus       212 ~~a~~~~~  219 (694)
T PRK15179        212 QAGLDAIG  219 (694)
T ss_pred             HHHHHhhC
Confidence            99998754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.87  E-value=2.2e-08  Score=104.39  Aligned_cols=90  Identities=18%  Similarity=0.263  Sum_probs=80.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW------------  200 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~------------  200 (224)
                      .+++++|+.+|++|++++|+++.++.++|.++. .+|++++|+++|++|++++|++..++..++.++.            
T Consensus       364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~  442 (1157)
T PRK11447        364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA  442 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            478999999999999999999999999999987 6999999999999999999999988776665431            


Q ss_pred             -----------------------------HHcCChHHHHHHHHHHHHhCCCC
Q 027404          201 -----------------------------INHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       201 -----------------------------~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                                                   ...+++++|+++|++|++++|++
T Consensus       443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~  494 (1157)
T PRK11447        443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS  494 (1157)
T ss_pred             hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence                                         12578999999999999999985

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.86  E-value=2.4e-08  Score=96.14  Aligned_cols=87  Identities=29%  Similarity=0.374  Sum_probs=62.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.++.+++.++. ..|+ .+|+.+|++++.+.|+++.++..+|.+++. .|++++|+.+|
T Consensus       784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~  860 (899)
T TIGR02917       784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRALPLL  860 (899)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            56677777777777777777777777776665 4666 667777777777777777777777766654 46788888888


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|.+
T Consensus       861 ~~a~~~~~~~  870 (899)
T TIGR02917       861 RKAVNIAPEA  870 (899)
T ss_pred             HHHHhhCCCC
Confidence            8888877754

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.86  E-value=2.1e-08  Score=89.06  Aligned_cols=88  Identities=16%  Similarity=0.104  Sum_probs=81.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++.+|+..+++|.+.+|+|+.+|..+|.+|. +.|+++.|..-|.+|+++.|+++.++.|+|..++ ..||++.|+.++
T Consensus       114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~-L~gd~~~A~~ll  191 (257)
T COG5010         114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLL-LRGDLEDAETLL  191 (257)
T ss_pred             cchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHH-HcCCHHHHHHHH
Confidence            78999999999999999999999999999886 7999999999999999999999999999998765 578999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      .+|...-+.|
T Consensus       192 l~a~l~~~ad  201 (257)
T COG5010         192 LPAYLSPAAD  201 (257)
T ss_pred             HHHHhCCCCc
Confidence            9998776643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.1e-08  Score=97.08  Aligned_cols=88  Identities=24%  Similarity=0.210  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      .++++|+.+|++||++||....+|..+|.-+.+ +.+..+|++.|++||+++|.|..+|+.+|..+.. .+-+.=|+-||
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYf  421 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYF  421 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHH
Confidence            578889999999999999988888888887774 7888889999999999999888888888877644 45677788888


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|+++.|+|
T Consensus       422 qkA~~~kPnD  431 (559)
T KOG1155|consen  422 QKALELKPND  431 (559)
T ss_pred             HHHHhcCCCc
Confidence            8888888876

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.84  E-value=2.2e-08  Score=85.07  Aligned_cols=88  Identities=22%  Similarity=0.198  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--c-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 027404          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEI--R-------GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH---  203 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~--~-------Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~---  203 (224)
                      |+.|.+.++.++..||.|++.+++.|.+|.+.  .       .-+++|+.-|+.||.++|+..++++++|+++..+.   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            68899999999999999999999999988752  1       22558999999999999999999999999876432   


Q ss_pred             -------CChHHHHHHHHHHHHhCCCC
Q 027404          204 -------KDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       204 -------gd~eeA~~~ferAL~l~P~d  223 (224)
                             ..|++|..+|++|+.++|++
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                   34889999999999999986

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.83  E-value=1.5e-08  Score=96.30  Aligned_cols=69  Identities=14%  Similarity=0.033  Sum_probs=58.4

Q ss_pred             HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404          149 AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV---LSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       149 ~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a---l~~lG~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      .+|+++++++|+|.+|+ .+|++++|+.+|++||+++|+++.+   |+++|.+|.. .|++++|+++|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            57888999999998887 5899999999999999999988854   8888887765 47889999999999887

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.81  E-value=4.7e-08  Score=98.07  Aligned_cols=87  Identities=14%  Similarity=0.085  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++|+.+|+++.++..++.++. ..|++++|+.+++++++.+|+++. +..+|.++.. .+++++|+..|
T Consensus        63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~Al~~l  139 (765)
T PRK10049         63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDELRAM  139 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHHHHHH
Confidence            78899999999999999999999999998887 699999999999999999999999 8899987765 68899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       140 ~~al~~~P~~  149 (765)
T PRK10049        140 TQALPRAPQT  149 (765)
T ss_pred             HHHHHhCCCC
Confidence            9999999986

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.80  E-value=4.6e-08  Score=83.07  Aligned_cols=90  Identities=17%  Similarity=0.217  Sum_probs=79.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH----
Q 027404          133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWIN----  202 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~---al~~lG~ll~~~----  202 (224)
                      .+++++|+..|++++..+|.++   .+++.+|.++. .++++++|+..|+++++..|+++.   +++.+|.++...    
T Consensus        46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~  124 (235)
T TIGR03302        46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV  124 (235)
T ss_pred             cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence            3789999999999999999987   57899999887 699999999999999999998876   677888877653    


Q ss_pred             ---cCChHHHHHHHHHHHHhCCCC
Q 027404          203 ---HKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       203 ---~gd~eeA~~~ferAL~l~P~d  223 (224)
                         .+++++|+..|+++++.+|++
T Consensus       125 ~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302       125 DRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCC
Confidence               157899999999999999975

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11906 transcriptional regulator; Provisional

Probab=98.80  E-value=3.5e-08  Score=93.81  Aligned_cols=89  Identities=9%  Similarity=0.051  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      ...+..+|.++.++|+++||.|+.++..+|.++. ..++++.|...|+||+.++|+.+.+|+.+|.++.. .|+.++|++
T Consensus       316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~  393 (458)
T PRK11906        316 LELAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARI  393 (458)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHH
Confidence            4467889999999999999999999999999887 58889999999999999999999999999977654 689999999


Q ss_pred             HHHHHHHhCCC
Q 027404          212 YFDRAVHSAPD  222 (224)
Q Consensus       212 ~ferAL~l~P~  222 (224)
                      .+++|++++|.
T Consensus       394 ~i~~alrLsP~  404 (458)
T PRK11906        394 CIDKSLQLEPR  404 (458)
T ss_pred             HHHHHhccCch
Confidence            99999999994

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.80  E-value=5.5e-08  Score=93.71  Aligned_cols=88  Identities=18%  Similarity=0.285  Sum_probs=74.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.++++++..+|.+..++..+|.+++. .|++++|+.+|
T Consensus       139 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~  216 (899)
T TIGR02917       139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNIELALAAY  216 (899)
T ss_pred             CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            67888888888888888888888888888876 58888888888888888888888888888877654 57888888888


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++++.++|++
T Consensus       217 ~~a~~~~p~~  226 (899)
T TIGR02917       217 RKAIALRPNN  226 (899)
T ss_pred             HHHHhhCCCC
Confidence            8888888865

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.79  E-value=6e-08  Score=97.32  Aligned_cols=89  Identities=18%  Similarity=0.140  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|+++++..|+++.++.++|.++. ..|++++|++.|++|++++|++..++..+|.++.. .+++++|+..
T Consensus       372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~-~~~~~~A~~~  449 (765)
T PRK10049        372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD-LQEWRQMDVL  449 (765)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCCHHHHHHH
Confidence            378999999999999999999999999999886 79999999999999999999999999999887655 5789999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      ++++++..|++
T Consensus       450 ~~~ll~~~Pd~  460 (765)
T PRK10049        450 TDDVVAREPQD  460 (765)
T ss_pred             HHHHHHhCCCC
Confidence            99999999987

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.78  E-value=4.5e-08  Score=68.83  Aligned_cols=63  Identities=19%  Similarity=0.208  Sum_probs=51.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      .+++++|..+++++++.+|+++.++..+|.++. .+|++++|.++|+++++..|++..+....+
T Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    8 QEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            367888888888888888888888888888877 588888888888888888888887765443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.77  E-value=1.2e-07  Score=84.47  Aligned_cols=89  Identities=16%  Similarity=0.257  Sum_probs=80.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCh
Q 027404          133 GKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---DGNVLSMYGDLIWINHKDA  206 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---da~al~~lG~ll~~~~gd~  206 (224)
                      .+++++|+..|++.|+..|++   +.+++.+|.+++ ..|++++|+.+|++++...|+   .+++++.+|.++.. .+++
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~  233 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDT  233 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCH
Confidence            479999999999999999999   589999999998 699999999999999998887   47788888987765 6899


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027404          207 PRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       207 eeA~~~ferAL~l~P~d  223 (224)
                      ++|+.+|+++++..|+.
T Consensus       234 ~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        234 AKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHHHHHHCcCC
Confidence            99999999999999974

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=9.3e-08  Score=86.34  Aligned_cols=89  Identities=17%  Similarity=0.187  Sum_probs=64.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +++..|...|++|+++.|+|++++..||.+++...|  +..+|...|++|+++||+|..+++.||..+++ .++|++|+.
T Consensus       170 ~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~~~~A~~  248 (287)
T COG4235         170 GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGDYAEAAA  248 (287)
T ss_pred             cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHH
Confidence            567777777777777777777777777777763222  34477777777777777777777777776655 467888888


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      .++..+++.|.+
T Consensus       249 ~Wq~lL~~lp~~  260 (287)
T COG4235         249 AWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHhcCCCC
Confidence            888887777643

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.76  E-value=1.1e-07  Score=85.81  Aligned_cols=88  Identities=16%  Similarity=0.178  Sum_probs=66.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCChHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      .+++++|+.+|+++++.+|++..+++.+|.++. ..|++++|+++|++++..+|.+ ..++..++.++.. .+++++|+.
T Consensus       193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~A~~  270 (389)
T PRK11788        193 RGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDEAEGLE  270 (389)
T ss_pred             CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHHHHHH
Confidence            367888888888888888888888888887776 5788888888888888887766 3455566666654 467778888


Q ss_pred             HHHHHHHhCCC
Q 027404          212 YFDRAVHSAPD  222 (224)
Q Consensus       212 ~ferAL~l~P~  222 (224)
                      +|++++++.|+
T Consensus       271 ~l~~~~~~~p~  281 (389)
T PRK11788        271 FLRRALEEYPG  281 (389)
T ss_pred             HHHHHHHhCCC
Confidence            88777777775

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=5e-08  Score=92.79  Aligned_cols=86  Identities=17%  Similarity=0.170  Sum_probs=79.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++...|++.|++||+++|.|-.+|+.+|.++. .++-+.=|+-||++|++..|+|...|..+|.++... ++.++|+.+|
T Consensus       378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl-~~~~eAiKCy  455 (559)
T KOG1155|consen  378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL-NRLEEAIKCY  455 (559)
T ss_pred             cccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            56789999999999999999999999999975 799999999999999999999999999999998664 6899999999


Q ss_pred             HHHHHhCC
Q 027404          214 DRAVHSAP  221 (224)
Q Consensus       214 erAL~l~P  221 (224)
                      ++|+...-
T Consensus       456 krai~~~d  463 (559)
T KOG1155|consen  456 KRAILLGD  463 (559)
T ss_pred             HHHHhccc
Confidence            99998653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.72  E-value=1e-07  Score=99.42  Aligned_cols=89  Identities=15%  Similarity=0.095  Sum_probs=81.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|+++++.+|+++.++.+++.++. ..|++++|+++|+++++.+|+++.++..+|.++.. .|++++|+++
T Consensus       616 ~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~-~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~-~g~~~eA~~~  693 (1157)
T PRK11447        616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDI-AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA-LGDTAAAQRT  693 (1157)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh-CCCHHHHHHH
Confidence            379999999999999999999999999999987 69999999999999999999999999999987754 6899999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++++...|++
T Consensus       694 ~~~al~~~~~~  704 (1157)
T PRK11447        694 FNRLIPQAKSQ  704 (1157)
T ss_pred             HHHHhhhCccC
Confidence            99999987653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=7.1e-08  Score=93.28  Aligned_cols=88  Identities=20%  Similarity=0.301  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP--~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      ..+..-.++|..|...+|  .|+++...||.+++ ..|+|++|+.||+.||..+|+|...|+.||..+. ...+.++|+.
T Consensus       408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIs  485 (579)
T KOG1125|consen  408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAIS  485 (579)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHH
Confidence            356677889999999999  89999999998887 6999999999999999999999999999998774 4678999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      .|.||+++.|++
T Consensus       486 AY~rALqLqP~y  497 (579)
T KOG1125|consen  486 AYNRALQLQPGY  497 (579)
T ss_pred             HHHHHHhcCCCe
Confidence            999999999986

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.68  E-value=9.1e-08  Score=67.25  Aligned_cols=60  Identities=22%  Similarity=0.267  Sum_probs=54.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          162 KFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       162 ~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .++. .++++++|++++++++.++|+++.++..+|.+++. .|++++|+..|++++++.|++
T Consensus         3 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    3 QIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCc
Confidence            3454 58999999999999999999999999999998876 578999999999999999976

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.68  E-value=1.1e-07  Score=79.08  Aligned_cols=76  Identities=16%  Similarity=0.023  Sum_probs=68.6

Q ss_pred             HHHC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 027404          147 IKAY-PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW  224 (224)
Q Consensus       147 Le~d-P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d~  224 (224)
                      ..++ ++.-+.++.||..++ ..|++++|+..|+.++.+||.++..|++||.++. ..|++++|+..|.+|+.++|+|+
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCc
Confidence            3456 777889999999988 5999999999999999999999999999998864 56899999999999999999974

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.66  E-value=2.4e-07  Score=83.59  Aligned_cols=87  Identities=20%  Similarity=0.181  Sum_probs=67.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR  208 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na-----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ee  208 (224)
                      +++++|+.+|+++++.+|.+.     .++.++|.++. .+|++++|+.+|+++++.+|++..++..+|.++.. .|++++
T Consensus       155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~  232 (389)
T PRK11788        155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALA-QGDYAA  232 (389)
T ss_pred             chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCHHH
Confidence            677888888888888777653     24556776665 57888888888888888888888888888877654 577888


Q ss_pred             HHHHHHHHHHhCCC
Q 027404          209 AKSYFDRAVHSAPD  222 (224)
Q Consensus       209 A~~~ferAL~l~P~  222 (224)
                      |+.+|++++..+|.
T Consensus       233 A~~~~~~~~~~~p~  246 (389)
T PRK11788        233 AIEALERVEEQDPE  246 (389)
T ss_pred             HHHHHHHHHHHChh
Confidence            88888888887775

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.66  E-value=1.9e-07  Score=83.40  Aligned_cols=87  Identities=11%  Similarity=0.106  Sum_probs=75.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCChHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGDLIWINHKDAPR  208 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~----al~~lG~ll~~~~gd~ee  208 (224)
                      .|++++|+..|+++++++|+++.++..+|.+++ ..|++++|+++|++++...|.++.    .+..++.++.. .|++++
T Consensus       127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~G~~~~  204 (355)
T cd05804         127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-RGDYEA  204 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-CCCHHH
Confidence            478999999999999999999999999999998 599999999999999999875433    34567877654 689999


Q ss_pred             HHHHHHHHHHhCC
Q 027404          209 AKSYFDRAVHSAP  221 (224)
Q Consensus       209 A~~~ferAL~l~P  221 (224)
                      |+.+|++++...|
T Consensus       205 A~~~~~~~~~~~~  217 (355)
T cd05804         205 ALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.5e-07  Score=90.36  Aligned_cols=88  Identities=22%  Similarity=0.219  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++|..|+.+|.+||..+|+|+.++.|-|.++. ..+.+..|++.++++|+++|+...+|..-|.++..+ ++|++|.+.|
T Consensus       372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m-k~ydkAleay  449 (539)
T KOG0548|consen  372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM-KEYDKALEAY  449 (539)
T ss_pred             cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            79999999999999999999999999998776 799999999999999999999999999999888765 5799999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +.++.++|++
T Consensus       450 ~eale~dp~~  459 (539)
T KOG0548|consen  450 QEALELDPSN  459 (539)
T ss_pred             HHHHhcCchh
Confidence            9999999974

>PRK15331 chaperone protein SicA; Provisional

Probab=98.63  E-value=2.3e-07  Score=77.76  Aligned_cols=87  Identities=11%  Similarity=0.121  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .|++++|+..|+-....||.|+..|..||.++. .++++++|+.+|-.|..++++|+...+..|.+++.+ ++.+.|...
T Consensus        50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l-~~~~~A~~~  127 (165)
T PRK15331         50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM-RKAAKARQC  127 (165)
T ss_pred             CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh-CCHHHHHHH
Confidence            379999999999999999999999999998875 799999999999999999999999999999998765 689999999


Q ss_pred             HHHHHHhCCC
Q 027404          213 FDRAVHSAPD  222 (224)
Q Consensus       213 ferAL~l~P~  222 (224)
                      |+.++. .|.
T Consensus       128 f~~a~~-~~~  136 (165)
T PRK15331        128 FELVNE-RTE  136 (165)
T ss_pred             HHHHHh-Ccc
Confidence            999987 443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=1.3e-07  Score=90.43  Aligned_cols=87  Identities=16%  Similarity=0.212  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|..-|++|++++|.++..+..++.++| +++++++++..|+.+++.=|+.++++..+|.++.++ ++|++|+++|
T Consensus       408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y-r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq-qqFd~A~k~Y  485 (606)
T KOG0547|consen  408 QQYEEAIADFQKAISLDPENAYAYIQLCCALY-RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ-QQFDKAVKQY  485 (606)
T ss_pred             HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH-HhHHHHHHHH
Confidence            68889999999999999999999999988888 688999999999999999999999999999988875 6899999999


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      ++|+.+.|.
T Consensus       486 D~ai~LE~~  494 (606)
T KOG0547|consen  486 DKAIELEPR  494 (606)
T ss_pred             HHHHhhccc
Confidence            999999986

>PLN02789 farnesyltranstransferase

Probab=98.60  E-value=5.1e-07  Score=82.63  Aligned_cols=87  Identities=8%  Similarity=0.032  Sum_probs=62.0

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDF--VKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~--eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      ++++|+.++.++|+.+|.+..+|+..+.++. ..++.  ++++.+++++|+++|.+..+|.+.+.++.. .+++++|+++
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~  164 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEY  164 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHH
Confidence            4677777777777777777777777776664 45553  567777777777777777777777766544 3567778888


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      ++++|+++|.+
T Consensus       165 ~~~~I~~d~~N  175 (320)
T PLN02789        165 CHQLLEEDVRN  175 (320)
T ss_pred             HHHHHHHCCCc
Confidence            88888777765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=5.5e-07  Score=81.37  Aligned_cols=89  Identities=13%  Similarity=0.138  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--ChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK--DAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g--d~eeA~~  211 (224)
                      .+.+.-+.-++.-|+.||+|++-|..+|.++. .+|++..|+..|.+|+++.|++++++..||.+++...+  +-.+|..
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            45888899999999999999999999999997 79999999999999999999999999999998876543  4679999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      .|++|++++|+|
T Consensus       215 ll~~al~~D~~~  226 (287)
T COG4235         215 LLRQALALDPAN  226 (287)
T ss_pred             HHHHHHhcCCcc
Confidence            999999999987

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.59  E-value=4.8e-07  Score=76.85  Aligned_cols=89  Identities=12%  Similarity=-0.003  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH---------
Q 027404          133 GKESESMDVYYQEMIKAYPEDAL---VLANYAKFLKEIR--------GDFVKAEEYCGRAILAKPGDGNVL---------  192 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~---~l~nlA~~l~e~~--------Gd~eeAe~~~erAL~ldP~da~al---------  192 (224)
                      .+++++|+..|+++++.+|+++.   +++.+|.++.. .        +++++|+++|++++..+|++..++         
T Consensus        83 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~  161 (235)
T TIGR03302        83 SGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL  161 (235)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence            36999999999999999999886   68888988763 3        789999999999999999987553         


Q ss_pred             --------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          193 --------SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       193 --------~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                              ..+|.+++. .|++++|+..|+++++..|++
T Consensus       162 ~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~  199 (235)
T TIGR03302       162 RNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDT  199 (235)
T ss_pred             HHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCC
Confidence                    234555544 589999999999999998864

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11906 transcriptional regulator; Provisional

Probab=98.59  E-value=3.3e-07  Score=87.25  Aligned_cols=89  Identities=13%  Similarity=0.066  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMI---KAYPEDALVLANYAKFLKEI--------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN  202 (224)
Q Consensus       134 ~d~e~A~~~yerAL---e~dP~na~~l~nlA~~l~e~--------~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~  202 (224)
                      ...++|..+|.+|+   ++||+++.++..+|.++...        ..+..+|.+..++|++++|+|+.++..+|.+++..
T Consensus       272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence            46678999999999   99999999999998876542        23455899999999999999999999999988875


Q ss_pred             cCChHHHHHHHHHHHHhCCCC
Q 027404          203 HKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       203 ~gd~eeA~~~ferAL~l~P~d  223 (224)
                       ++++.|+.+|++|+.++|+.
T Consensus       352 -~~~~~a~~~f~rA~~L~Pn~  371 (458)
T PRK11906        352 -GQAKVSHILFEQAKIHSTDI  371 (458)
T ss_pred             -cchhhHHHHHHHHhhcCCcc
Confidence             56999999999999999985

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.58  E-value=4.7e-07  Score=87.79  Aligned_cols=87  Identities=13%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~--dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      .++..|....++++.+  +|.++.++..+|..+. ..|++++|+.+|+||++++| ++.+|..+|.++.. .|++++|++
T Consensus       398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~  474 (517)
T PRK10153        398 KQLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAAD  474 (517)
T ss_pred             HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHH
Confidence            3466778888887775  8888999999987765 68999999999999999999 58899999988754 689999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      .|++|++++|.+
T Consensus       475 ~~~~A~~L~P~~  486 (517)
T PRK10153        475 AYSTAFNLRPGE  486 (517)
T ss_pred             HHHHHHhcCCCC
Confidence            999999999975

>PLN02789 farnesyltranstransferase

Probab=98.57  E-value=6.5e-07  Score=81.94  Aligned_cols=88  Identities=10%  Similarity=0.100  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CC----hHHH
Q 027404          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH--KD----APRA  209 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~--gd----~eeA  209 (224)
                      .+++..++.+||+.||.|..+|...+.++. ..+++++|++++.++|+.||.+..+|...+.++....  +.    .+++
T Consensus       124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~-~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e  202 (320)
T PLN02789        124 ANKELEFTRKILSLDAKNYHAWSHRQWVLR-TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE  202 (320)
T ss_pred             hHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence            467899999999999999999999999987 6899999999999999999999999999987765430  12    3578


Q ss_pred             HHHHHHHHHhCCCCC
Q 027404          210 KSYFDRAVHSAPDDW  224 (224)
Q Consensus       210 ~~~ferAL~l~P~d~  224 (224)
                      ++|..++|.++|+|.
T Consensus       203 l~y~~~aI~~~P~N~  217 (320)
T PLN02789        203 LKYTIDAILANPRNE  217 (320)
T ss_pred             HHHHHHHHHhCCCCc
Confidence            999999999999873

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=4.6e-07  Score=87.74  Aligned_cols=88  Identities=19%  Similarity=0.368  Sum_probs=68.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHH-----------------------------------------HHHHHcCCHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAK-----------------------------------------FLKEIRGDFV  172 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~-----------------------------------------~l~e~~Gd~e  172 (224)
                      ++++.|..+|.+|+.+.|.||.+++.+|.                                         ++. ..+.++
T Consensus       394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-kl~~~~  472 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-KLNKYE  472 (611)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-HHhhHH
Confidence            67788888888888888888766554444                                         333 457778


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          173 KAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       173 eAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +|+.+|++||.+.|.++.++..+|.++.. .|+++.|+++|.+||.++|++
T Consensus       473 eAI~~~q~aL~l~~k~~~~~asig~iy~l-lgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  473 EAIDYYQKALLLSPKDASTHASIGYIYHL-LGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCcc
Confidence            88888888888888888888888876644 577888888888888888876

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.55  E-value=1.4e-07  Score=65.38  Aligned_cols=56  Identities=18%  Similarity=0.318  Sum_probs=51.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ..|++++|+++|++++..+|++..++..++.+++. .|++++|..++++++..+|++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCH
Confidence            47999999999999999999999999999999876 589999999999999999974

...

>TIGR00540 hemY_coli hemY protein

Probab=98.52  E-value=9.1e-07  Score=82.42  Aligned_cols=83  Identities=14%  Similarity=0.202  Sum_probs=72.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA--LVLANYAKFLKEIRGDFVKAEEYCG--RAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na--~~l~nlA~~l~e~~Gd~eeAe~~~e--rAL~ldP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      ++.+.+.+.++++++.+|+|+  .++..||++++ .+|++++|.+||+  ++++.+|++.. +..+|.+++. .|+.++|
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~-~g~~~~A  389 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM-KHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQ-AGDKAEA  389 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH-cCCHHHH
Confidence            567899999999999999999  88999999997 6999999999999  68888897766 4478998877 4789999


Q ss_pred             HHHHHHHHHh
Q 027404          210 KSYFDRAVHS  219 (224)
Q Consensus       210 ~~~ferAL~l  219 (224)
                      .++|++++.+
T Consensus       390 ~~~~~~~l~~  399 (409)
T TIGR00540       390 AAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHHHH
Confidence            9999998753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.52  E-value=8.5e-07  Score=89.34  Aligned_cols=89  Identities=22%  Similarity=0.350  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |++++|+..+..+|+++|.++.+|+.+|.++. .+||.++|..+...|--++|++.+.|..++....+ .+.+.+|.-+|
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~cy  230 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYCY  230 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHHH
Confidence            79999999999999999999999999999875 69999999999999999999999999999886544 57899999999


Q ss_pred             HHHHHhCCCCC
Q 027404          214 DRAVHSAPDDW  224 (224)
Q Consensus       214 erAL~l~P~d~  224 (224)
                      .+||+++|.+|
T Consensus       231 ~rAI~~~p~n~  241 (895)
T KOG2076|consen  231 SRAIQANPSNW  241 (895)
T ss_pred             HHHHhcCCcch
Confidence            99999999886

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.52  E-value=5.9e-07  Score=78.75  Aligned_cols=88  Identities=20%  Similarity=0.231  Sum_probs=69.6

Q ss_pred             CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAY--PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~d--P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      ++++++...++++.+..  |.++.+|..+|.++. ..|+.++|+++|++|++++|++..++..++.++.. .+++++|.+
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~~~  201 (280)
T PF13429_consen  124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEARE  201 (280)
T ss_dssp             T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHHHH
Confidence            78999999999988765  778899999999886 69999999999999999999999999998887765 577888888


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      .++...+..|.+
T Consensus       202 ~l~~~~~~~~~~  213 (280)
T PF13429_consen  202 ALKRLLKAAPDD  213 (280)
T ss_dssp             HHHHHHHH-HTS
T ss_pred             HHHHHHHHCcCH
Confidence            888777765543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.51  E-value=2.2e-06  Score=68.19  Aligned_cols=86  Identities=16%  Similarity=0.118  Sum_probs=73.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 027404          131 DSGKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---DGNVLSMYGDLIWINHK  204 (224)
Q Consensus       131 ~~~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---da~al~~lG~ll~~~~g  204 (224)
                      |..|+.++|+.+|++|++..+..   ..++..+|..+. ..|++++|+..+++++...|+   +..+...++.+++. .|
T Consensus        12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~g   89 (120)
T PF12688_consen   12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LG   89 (120)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CC
Confidence            55689999999999999986665   468889999987 699999999999999999898   77777788887766 57


Q ss_pred             ChHHHHHHHHHHHH
Q 027404          205 DAPRAKSYFDRAVH  218 (224)
Q Consensus       205 d~eeA~~~ferAL~  218 (224)
                      +.++|+.++-.++.
T Consensus        90 r~~eAl~~~l~~la  103 (120)
T PF12688_consen   90 RPKEALEWLLEALA  103 (120)
T ss_pred             CHHHHHHHHHHHHH
Confidence            89999999887765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.51  E-value=1.5e-07  Score=67.15  Aligned_cols=68  Identities=22%  Similarity=0.341  Sum_probs=54.2

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 027404          151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA----KPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       151 P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l----dP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~  220 (224)
                      |+-+.++.++|.++. .+|++++|+.+|++|+++    .+++   +.++.++|.++.. .|++++|+.+|++|+++.
T Consensus         2 ~~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence            334578999999988 699999999999999965    2222   4567889988765 689999999999999863

...

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=3.3e-07  Score=87.80  Aligned_cols=88  Identities=17%  Similarity=0.204  Sum_probs=71.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027404          132 SGKESESMDVYYQEMIKAYPE------DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD  205 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd  205 (224)
                      .+++|+.|++.|.+||++.|.      ++..+.+-|.++.++.+|+..|+..+++||++||....++..||.+..+ +++
T Consensus       474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ-~~~  552 (606)
T KOG0547|consen  474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQ-RGK  552 (606)
T ss_pred             hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-Hhh
Confidence            346888888888888888888      7777777777766677888888888888888888888888888887765 467


Q ss_pred             hHHHHHHHHHHHHhC
Q 027404          206 APRAKSYFDRAVHSA  220 (224)
Q Consensus       206 ~eeA~~~ferAL~l~  220 (224)
                      .++|+++|++++.+.
T Consensus       553 i~eAielFEksa~lA  567 (606)
T KOG0547|consen  553 IDEAIELFEKSAQLA  567 (606)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888888887653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.49  E-value=9.5e-07  Score=60.11  Aligned_cols=66  Identities=20%  Similarity=0.306  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +++++|.++. .+|++++|+.+|+++++..|.+..++..+|.++... +++++|+.+|++++++.|.+
T Consensus         2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcc
Confidence            5788888887 599999999999999999999999999999888764 68999999999999998875

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.44  E-value=2e-06  Score=80.10  Aligned_cols=84  Identities=13%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++.+++.+.+++.++.+|+|+..+..+|.++. ..+++++|+++|+++++.+|++.. +..++.++.. .|+.++|..+|
T Consensus       308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~-~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~-~g~~~~A~~~~  384 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM-KHGEWQEASLAFRAALKQRPDAYD-YAWLADALDR-LHKPEEAAAMR  384 (398)
T ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH-cCCHHHHHHHH
Confidence            78899999999999999999999999999988 699999999999999999998766 3358887765 68899999999


Q ss_pred             HHHHHhC
Q 027404          214 DRAVHSA  220 (224)
Q Consensus       214 erAL~l~  220 (224)
                      ++++.+.
T Consensus       385 ~~~l~~~  391 (398)
T PRK10747        385 RDGLMLT  391 (398)
T ss_pred             HHHHhhh
Confidence            9998764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.44  E-value=1.3e-06  Score=78.07  Aligned_cols=87  Identities=14%  Similarity=0.110  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +....+...++.....+|....++..+|.++. .+|++++|++.|+++++++|+++.++..+|.+++. .|++++|+.++
T Consensus        94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l  171 (355)
T cd05804          94 GMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFM  171 (355)
T ss_pred             cCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            44455555555555666777777778887776 69999999999999999999999999999998876 57899999999


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      ++++...|.
T Consensus       172 ~~~l~~~~~  180 (355)
T cd05804         172 ESWRDTWDC  180 (355)
T ss_pred             HhhhhccCC
Confidence            999998763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.43  E-value=1.3e-06  Score=77.69  Aligned_cols=88  Identities=23%  Similarity=0.261  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++-+.+..+..+++..+|.+.+++..+|..+. ..|++..|+..+++|..++|+|..+|..+|.+|. +.|++++|...|
T Consensus        80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay  157 (257)
T COG5010          80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAY  157 (257)
T ss_pred             ccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHH
Confidence            45567778889999999999999999999887 7999999999999999999999999999998775 568999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      .+|+++.|++
T Consensus       158 ~qAl~L~~~~  167 (257)
T COG5010         158 RQALELAPNE  167 (257)
T ss_pred             HHHHHhccCC
Confidence            9999999975

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.9e-06  Score=80.65  Aligned_cols=88  Identities=16%  Similarity=0.202  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHHHHCC----CC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYP----ED-----------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP----~n-----------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      ++|..|...|++|+..=.    .+           -.++.|+|.++. ..++|.+|++++.++|.++|+|+.+++.-|.+
T Consensus       222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A  300 (397)
T KOG0543|consen  222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQA  300 (397)
T ss_pred             chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence            789999999999987633    11           156789998776 79999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          199 IWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       199 l~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.. .++|+.|+..|++|++++|+|
T Consensus       301 ~l~-~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  301 LLA-LGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HHh-hccHHHHHHHHHHHHHhCCCc
Confidence            876 478999999999999999986

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.41  E-value=1.9e-06  Score=70.39  Aligned_cols=87  Identities=11%  Similarity=0.082  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHH
Q 027404          135 ESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~n--a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA  209 (224)
                      .+..+...+...++.++.+  +.+++++|.++. .+|++++|+.+|++|+.+.|++   +.++.++|.++.. .+++++|
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA   91 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKA   91 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHH
Confidence            3566667776666777777  577799998876 6999999999999999997764   4588999988765 6899999


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      +.+|++|++++|.+
T Consensus        92 ~~~~~~Al~~~~~~  105 (168)
T CHL00033         92 LEYYFQALERNPFL  105 (168)
T ss_pred             HHHHHHHHHhCcCc
Confidence            99999999998864

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.40  E-value=2e-06  Score=79.36  Aligned_cols=67  Identities=10%  Similarity=-0.011  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~  201 (224)
                      +++++|+.+|++||+++|+++.+++++|.+++ ..|++++|+.+|++|++++|+++.+...++.+...
T Consensus        50 g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         50 GNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999999999999987 69999999999999999999999998888766433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=2.8e-06  Score=75.90  Aligned_cols=89  Identities=17%  Similarity=0.263  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--ChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK--DAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g--d~eeA~~  211 (224)
                      |..-+|++..-.-++..++|+++|..++.++. ..|+|++|.-||+..+-++|.++..+..||.+++-.+|  +++-|..
T Consensus       134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark  212 (289)
T KOG3060|consen  134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK  212 (289)
T ss_pred             CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            44457888888888888899999999999887 68999999999999999999999998899988876654  4778999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      ||.+|++++|.+
T Consensus       213 yy~~alkl~~~~  224 (289)
T KOG3060|consen  213 YYERALKLNPKN  224 (289)
T ss_pred             HHHHHHHhChHh
Confidence            999999999854

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.37  E-value=2.2e-06  Score=85.38  Aligned_cols=89  Identities=16%  Similarity=0.176  Sum_probs=81.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEE--YCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~--~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      ++.+++|.+.|..|+.+||+++.....+|.++. ..|+..-|+.  .+.-|+++||.++.+|+.+|.++. ..||.++|.
T Consensus       697 ~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k-~~Gd~~~Aa  774 (799)
T KOG4162|consen  697 KGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK-KLGDSKQAA  774 (799)
T ss_pred             HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HccchHHHH
Confidence            378999999999999999999999999999987 5898877777  999999999999999999998875 578999999


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      ++|..|+++++.+
T Consensus       775 ecf~aa~qLe~S~  787 (799)
T KOG4162|consen  775 ECFQAALQLEESN  787 (799)
T ss_pred             HHHHHHHhhccCC
Confidence            9999999998764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.37  E-value=4.2e-06  Score=68.76  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=64.7

Q ss_pred             HHHHHHHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027404          142 YYQEMIKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (224)
Q Consensus       142 ~yerALe~dP--~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferA  216 (224)
                      .+.+.+..++  ..+.+++++|.++. ..|++++|+.+|++|+.+.|+.   +.++..+|.++.. .|++++|+.+|++|
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a   98 (172)
T PRK02603         21 LILKILPINKKAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQA   98 (172)
T ss_pred             HHHHHcccccHhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            3444444443  45678899998886 6999999999999999988764   4688899988765 68999999999999


Q ss_pred             HHhCCCC
Q 027404          217 VHSAPDD  223 (224)
Q Consensus       217 L~l~P~d  223 (224)
                      +++.|++
T Consensus        99 l~~~p~~  105 (172)
T PRK02603         99 LELNPKQ  105 (172)
T ss_pred             HHhCccc
Confidence            9999875

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.36  E-value=3e-06  Score=86.32  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=51.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |+++.|+..|+++++.+|+++.+...++.++. ..|+.++|+.++++++...|.....+..+|.++. ..+++++|+++|
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aiely  125 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALALW  125 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence            56677777777777777777533335555554 4566666666666666333333333333344443 345666666666


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++.+|++
T Consensus       126 ~kaL~~dP~n  135 (822)
T PRK14574        126 QSSLKKDPTN  135 (822)
T ss_pred             HHHHhhCCCC
Confidence            6666666654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.36  E-value=4.2e-07  Score=56.73  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=25.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027404          142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAE  175 (224)
Q Consensus       142 ~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe  175 (224)
                      +|++||+++|+|+.+|++||.++. ..|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence            377888888888888888888776 578888776

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.35  E-value=4.1e-06  Score=67.12  Aligned_cols=82  Identities=15%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          133 GKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      .+++++|...|++++...|++   +.+...+|.++. .+|++++|+..++. +.-.+..+.++...|.++.. .|++++|
T Consensus        61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~~~A  137 (145)
T PF09976_consen   61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDYDEA  137 (145)
T ss_pred             CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCHHHH
Confidence            378899999999999887766   357778888887 58999999998866 44455566777788888765 5789999


Q ss_pred             HHHHHHHH
Q 027404          210 KSYFDRAV  217 (224)
Q Consensus       210 ~~~ferAL  217 (224)
                      +..|++||
T Consensus       138 ~~~y~~Al  145 (145)
T PF09976_consen  138 RAAYQKAL  145 (145)
T ss_pred             HHHHHHhC
Confidence            99998875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.34  E-value=4.8e-06  Score=62.18  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.+++..|..+. .+|++++|+.+|++++..+|++   +.++..+|.+++. .+++++|+.+|++++...|++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCC
Confidence            467888898887 6999999999999999999987   5688889988766 578999999999999998874

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.33  E-value=5.1e-06  Score=79.35  Aligned_cols=88  Identities=16%  Similarity=0.155  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +.+++|+..++..|...|+|+.++-..+.++. ..++..+|++.+++|+.++|+.+.++.+||..|+. .|++++|+.++
T Consensus       320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~~L  397 (484)
T COG4783         320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIRIL  397 (484)
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHHHH
Confidence            56677777777777777877777777777776 47777788888888888888777777777777655 46777888887


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      .+.+.-+|+|
T Consensus       398 ~~~~~~~p~d  407 (484)
T COG4783         398 NRYLFNDPED  407 (484)
T ss_pred             HHHhhcCCCC
Confidence            7777777765

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.1e-06  Score=82.72  Aligned_cols=90  Identities=17%  Similarity=0.174  Sum_probs=82.6

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      ..++++.|+.+|-.||.++|.|...+.|-..++. ..|+|++|++--.++++++|+=+..|...|..++- .|+|++|+.
T Consensus        14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA~~   91 (539)
T KOG0548|consen   14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEAIL   91 (539)
T ss_pred             ccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHHHH
Confidence            4479999999999999999999999999877765 79999999999999999999999999999988765 579999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      .|...|+++|++
T Consensus        92 ay~~GL~~d~~n  103 (539)
T KOG0548|consen   92 AYSEGLEKDPSN  103 (539)
T ss_pred             HHHHHhhcCCch
Confidence            999999999975

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.31  E-value=1.5e-06  Score=56.61  Aligned_cols=43  Identities=19%  Similarity=0.183  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~  197 (224)
                      |.+++.+|.++. ..|++++|+++|+++|+.+|+|+.+|..||.
T Consensus         1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            468899999987 6999999999999999999999999998874

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.28  E-value=4.9e-06  Score=80.73  Aligned_cols=89  Identities=9%  Similarity=-0.014  Sum_probs=71.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHc
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR-------GDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINH  203 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~-------Gd~eeAe~~~erAL~l--dP~da~al~~lG~ll~~~~  203 (224)
                      .+++.+|+.+|++||++||+++.++..++.++....       .+..+|.+.+++++.+  +|.++.++..+|.+.. ..
T Consensus       355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~  433 (517)
T PRK10153        355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL-VK  433 (517)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hc
Confidence            356889999999999999999999998887654221       2345777788887774  7888888888876654 46


Q ss_pred             CChHHHHHHHHHHHHhCCC
Q 027404          204 KDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       204 gd~eeA~~~ferAL~l~P~  222 (224)
                      +++++|..+|++|++++|+
T Consensus       434 g~~~~A~~~l~rAl~L~ps  452 (517)
T PRK10153        434 GKTDEAYQAINKAIDLEMS  452 (517)
T ss_pred             CCHHHHHHHHHHHHHcCCC
Confidence            8999999999999999994

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.23  E-value=1.1e-05  Score=77.11  Aligned_cols=85  Identities=16%  Similarity=0.131  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN-----------  202 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~-----------  202 (224)
                      ++.++|++.|++|+.++|+.+.++.+||.++. ..|++++|+.++++.+..+|+|+..|..++..+-.+           
T Consensus       354 nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A  432 (484)
T COG4783         354 NKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA  432 (484)
T ss_pred             CChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence            78999999999999999999999999999998 699999999999999999999999999999876442           


Q ss_pred             -----cCChHHHHHHHHHHHHh
Q 027404          203 -----HKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       203 -----~gd~eeA~~~ferAL~l  219 (224)
                           .|++++|+..+.+|.+.
T Consensus       433 E~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         433 EGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh
Confidence                 35566666666666554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=3.1e-06  Score=76.79  Aligned_cols=65  Identities=14%  Similarity=0.034  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI  199 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll  199 (224)
                      +.++.|++-++.||++||.+..+|..+|.+++ .+|++++|++.|+|||+++|++..+..+|..+-
T Consensus       129 g~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae  193 (304)
T KOG0553|consen  129 GEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYKKALELDPDNESYKSNLKIAE  193 (304)
T ss_pred             cchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence            78999999999999999999999999999988 699999999999999999999998888887553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.18  E-value=3.7e-06  Score=78.24  Aligned_cols=89  Identities=20%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      ++.|++|+.||-++|.++|.|+..+.|-|.+|. ++..+..|+.-+..||.+|..+..+|...+.+-..+ |...||..-
T Consensus       110 QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L-g~~~EAKkD  187 (536)
T KOG4648|consen  110 QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL-GNNMEAKKD  187 (536)
T ss_pred             ccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH-hhHHHHHHh
Confidence            368899999999999999999999999998887 789999999999999999999999999888776654 578999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      ++.+|++.|+.
T Consensus       188 ~E~vL~LEP~~  198 (536)
T KOG4648|consen  188 CETVLALEPKN  198 (536)
T ss_pred             HHHHHhhCccc
Confidence            99999999974

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.16  E-value=8.8e-06  Score=80.89  Aligned_cols=91  Identities=13%  Similarity=0.065  Sum_probs=81.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +.++|++|..+++.+++++|-....|+++|.+.. ..++++.|.++|.+++.++|+++.+|++++..+... ++-.+|..
T Consensus       497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~-~~k~ra~~  574 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL-KKKKRAFR  574 (777)
T ss_pred             cchhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH-hhhHHHHH
Confidence            3579999999999999999999999999998887 589999999999999999999999999999988764 56789999


Q ss_pred             HHHHHHHhCCCCC
Q 027404          212 YFDRAVHSAPDDW  224 (224)
Q Consensus       212 ~ferAL~l~P~d~  224 (224)
                      .+++|++-+-.+|
T Consensus       575 ~l~EAlKcn~~~w  587 (777)
T KOG1128|consen  575 KLKEALKCNYQHW  587 (777)
T ss_pred             HHHHHhhcCCCCC
Confidence            9999998764443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.13  E-value=3.1e-05  Score=72.14  Aligned_cols=87  Identities=8%  Similarity=0.023  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLA-NYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~-nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      .++++.|..+|++|.+.+|++..+.. ..+.++. .+|++++|+++++++++.+|+++.++..++.++.. .|++++|++
T Consensus       131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-~gdw~~a~~  208 (398)
T PRK10747        131 RGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-TGAWSSLLD  208 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhHHHHHH
Confidence            37889999999999999999865443 3366665 68999999999999999999999999988887765 478999998


Q ss_pred             HHHHHHHhCC
Q 027404          212 YFDRAVHSAP  221 (224)
Q Consensus       212 ~ferAL~l~P  221 (224)
                      .+.+..+..+
T Consensus       209 ~l~~l~k~~~  218 (398)
T PRK10747        209 ILPSMAKAHV  218 (398)
T ss_pred             HHHHHHHcCC
Confidence            8888876544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.13  E-value=8.2e-06  Score=77.82  Aligned_cols=50  Identities=14%  Similarity=0.060  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404          134 KESESMDVYYQEMIKAYPEDALV---LANYAKFLKEIRGDFVKAEEYCGRAILA  184 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~---l~nlA~~l~e~~Gd~eeAe~~~erAL~l  184 (224)
                      +++++|+.+|++||+++|+++++   |+|+|.+|. .+|++++|+++|++||++
T Consensus        89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALel  141 (453)
T PLN03098         89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence            79999999999999999999965   999999887 699999999999999998

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.12  E-value=2.7e-05  Score=73.48  Aligned_cols=84  Identities=18%  Similarity=0.235  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +.++.|+..|++..+.+|.   +...+|.++. ..++-.+|++.+.++|..+|.++..+...+.++.. .++++.|+...
T Consensus       183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA  257 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA  257 (395)
T ss_pred             ccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            3455555555555555443   3333444443 24444455555555555555555555544444433 34455555555


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      ++|+.+.|+
T Consensus       258 k~av~lsP~  266 (395)
T PF09295_consen  258 KKAVELSPS  266 (395)
T ss_pred             HHHHHhCch
Confidence            555555554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.10  E-value=5.4e-05  Score=66.60  Aligned_cols=89  Identities=20%  Similarity=0.148  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc----
Q 027404          134 KESESMDVYYQEMIKAYPEDALVL---ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINH----  203 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l---~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~---al~~lG~ll~~~~----  203 (224)
                      +++++|+..|++++...|..+.+.   +.+|.+++ ..+++++|+.+|++.|+..|+++.   +++.+|.+.....    
T Consensus        46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~  124 (243)
T PRK10866         46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSAL  124 (243)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence            799999999999999999998554   88999988 699999999999999999998755   5666665432111    


Q ss_pred             ----------CC---hHHHHHHHHHHHHhCCCC
Q 027404          204 ----------KD---APRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       204 ----------gd---~eeA~~~ferAL~l~P~d  223 (224)
                                .|   ..+|+..|++.++.-|+.
T Consensus       125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S  157 (243)
T PRK10866        125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS  157 (243)
T ss_pred             hhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence                      12   357889999999998863

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.10  E-value=3.1e-05  Score=79.03  Aligned_cols=90  Identities=11%  Similarity=0.046  Sum_probs=84.1

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      ..+++.+|++.+++.+...|.|+.++..+|.++. .+|++.+|++.+++++.++|++..+...++.+...+ +++++|..
T Consensus       428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~-~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l-~e~~~A~~  505 (822)
T PRK14574        428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYL-ARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL-QEWHQMEL  505 (822)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh-hhHHHHHH
Confidence            3479999999999999999999999999999987 799999999999999999999999999999887765 78999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      ..+..++..|++
T Consensus       506 ~~~~l~~~~Pe~  517 (822)
T PRK14574        506 LTDDVISRSPED  517 (822)
T ss_pred             HHHHHHhhCCCc
Confidence            999999999987

>TIGR00540 hemY_coli hemY protein

Probab=98.10  E-value=4.5e-05  Score=71.08  Aligned_cols=84  Identities=12%  Similarity=0.108  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      +++++|..+|+++.+..|++. .+...++.++. ..|++++|.+.++++++.+|+++.++..++.++.. .+++++|++.
T Consensus       132 g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~-~~d~~~a~~~  209 (409)
T TIGR00540       132 GDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR-SGAWQALDDI  209 (409)
T ss_pred             CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            566777777777777666664 35555566655 46777777777777777777777776666666544 3567777777


Q ss_pred             HHHHHHh
Q 027404          213 FDRAVHS  219 (224)
Q Consensus       213 ferAL~l  219 (224)
                      +++.++.
T Consensus       210 l~~l~k~  216 (409)
T TIGR00540       210 IDNMAKA  216 (409)
T ss_pred             HHHHHHc
Confidence            7666654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.6e-05  Score=70.65  Aligned_cols=87  Identities=20%  Similarity=0.109  Sum_probs=78.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       131 ~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      +....|..|+.+|-+||.++|..+..+.|-|..+. ...+++.+++-.++|++++||-+.+++.+|.++.... .|++|+
T Consensus        21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~-~~~eaI   98 (284)
T KOG4642|consen   21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK-GYDEAI   98 (284)
T ss_pred             cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc-cccHHH
Confidence            34468899999999999999999999999998877 5899999999999999999999999999999887654 599999


Q ss_pred             HHHHHHHHh
Q 027404          211 SYFDRAVHS  219 (224)
Q Consensus       211 ~~ferAL~l  219 (224)
                      ..+.+|..+
T Consensus        99 ~~Lqra~sl  107 (284)
T KOG4642|consen   99 KVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHH
Confidence            999999654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.08  E-value=1.4e-05  Score=77.54  Aligned_cols=84  Identities=17%  Similarity=0.185  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~--------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--------dP~da~al~~lG~  197 (224)
                      ++++.|+..|++|++.        .|.=+..+.++|.++. .++++.+|+..|++|+.+        +|.-+.++.+|+.
T Consensus       213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~  291 (508)
T KOG1840|consen  213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV  291 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            8999999999999999        6666667777998887 799999999999999975        4555667889998


Q ss_pred             HHHHHcCChHHHHHHHHHHHHh
Q 027404          198 LIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      +|.. .|+|++|..++++|+++
T Consensus       292 ly~~-~GKf~EA~~~~e~Al~I  312 (508)
T KOG1840|consen  292 LYYK-QGKFAEAEEYCERALEI  312 (508)
T ss_pred             HHhc-cCChHHHHHHHHHHHHH
Confidence            8765 68999999999999986

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.07  E-value=1.3e-05  Score=76.92  Aligned_cols=89  Identities=15%  Similarity=0.110  Sum_probs=81.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |++++|...|+.||..|....++++|+|..+. .+|++++|+.||-+.-.+--++++++..++.+|- ...+...|+++|
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~  581 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELL  581 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence            69999999999999999999999999998775 7999999999999988888899999999998775 457899999999


Q ss_pred             HHHHHhCCCCC
Q 027404          214 DRAVHSAPDDW  224 (224)
Q Consensus       214 erAL~l~P~d~  224 (224)
                      -++..+-|+|.
T Consensus       582 ~q~~slip~dp  592 (840)
T KOG2003|consen  582 MQANSLIPNDP  592 (840)
T ss_pred             HHhcccCCCCH
Confidence            99999999873

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.06  E-value=4.2e-06  Score=52.19  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=30.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          177 YCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       177 ~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +|+|||+++|+++.+|.+||.++.. .|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence            5899999999999999999998765 689999863

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.05  E-value=2.6e-05  Score=80.03  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      ++ .+.++|-+.|...+.+-.+++.+|.+|. .+|+.++|.+.|+++|+++|+|+.++.+||..+...  ++++|++++.
T Consensus        98 ~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~  173 (906)
T PRK14720         98 KW-AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLK  173 (906)
T ss_pred             ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence            45 7777888888889999999999998875 799999999999999999999999999999887664  8999999999


Q ss_pred             HHHHh
Q 027404          215 RAVHS  219 (224)
Q Consensus       215 rAL~l  219 (224)
                      +|+..
T Consensus       174 KAV~~  178 (906)
T PRK14720        174 KAIYR  178 (906)
T ss_pred             HHHHH
Confidence            99875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.05  E-value=1.2e-05  Score=74.87  Aligned_cols=88  Identities=15%  Similarity=0.161  Sum_probs=81.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++..|..+|..||+.||++..+++.-|.++. .+|+-..|+.-+.++|++.|+...+....|.+++. .|.+++|+.-|
T Consensus        52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~~DF  129 (504)
T KOG0624|consen   52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAEADF  129 (504)
T ss_pred             hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHHHHH
Confidence            58899999999999999999999999999887 69999999999999999999999999989988876 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++.|+.+|.+
T Consensus       130 ~~vl~~~~s~  139 (504)
T KOG0624|consen  130 DQVLQHEPSN  139 (504)
T ss_pred             HHHHhcCCCc
Confidence            9999999964

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=2.5e-05  Score=74.07  Aligned_cols=89  Identities=16%  Similarity=0.291  Sum_probs=77.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       131 ~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      |+. -.++|...|+++|.++|...-+...+|.++. +.|.++.++..+++++..-|+ ...+..+|.++.. .+.+++|.
T Consensus       416 dp~-~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A-~Ne~Q~am  491 (564)
T KOG1174|consen  416 DPR-MREKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRA-QNEPQKAM  491 (564)
T ss_pred             Cch-hHHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHH-hhhHHHHH
Confidence            444 3489999999999999999999999999876 799999999999999988775 4667779998765 46799999


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      ++|..|+++||++
T Consensus       492 ~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  492 EYYYKALRQDPKS  504 (564)
T ss_pred             HHHHHHHhcCccc
Confidence            9999999999986

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=9.6e-06  Score=75.11  Aligned_cols=87  Identities=21%  Similarity=0.201  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          134 KESESMDVYYQEMIKAY--PE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe~d--P~-na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      ++++-+...|++|+...  |+ -+++|+|++.++. -.||+.-|.+||+-|+.-||+|.+++.++|. +..+.|+.++|.
T Consensus       372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV-~iGD~nlA~rcfrlaL~~d~~h~ealnNLav-L~~r~G~i~~Ar  449 (478)
T KOG1129|consen  372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV-TIGDFNLAKRCFRLALTSDAQHGEALNNLAV-LAARSGDILGAR  449 (478)
T ss_pred             cchhhhHHHHHHHHhhccCcchhhhhhhccceeEE-eccchHHHHHHHHHHhccCcchHHHHHhHHH-HHhhcCchHHHH
Confidence            44445555555554432  21 1345555555444 3578888888888888888888888888885 455678899999


Q ss_pred             HHHHHHHHhCCC
Q 027404          211 SYFDRAVHSAPD  222 (224)
Q Consensus       211 ~~ferAL~l~P~  222 (224)
                      .++..|-.++|+
T Consensus       450 sll~~A~s~~P~  461 (478)
T KOG1129|consen  450 SLLNAAKSVMPD  461 (478)
T ss_pred             HHHHHhhhhCcc
Confidence            999988888885

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.00  E-value=5.6e-05  Score=66.08  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=76.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR  208 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na-----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ee  208 (224)
                      ++|++|..-|+.||+.-|..+     -++.|-|.++. .++..+.|+.-+.+||+++|.+-.++...|.+|-. ...|++
T Consensus       109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek~ee  186 (271)
T KOG4234|consen  109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEKYEE  186 (271)
T ss_pred             ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhhHHH
Confidence            689999999999999999875     35556676665 68999999999999999999999999888877755 467999


Q ss_pred             HHHHHHHHHHhCCC
Q 027404          209 AKSYFDRAVHSAPD  222 (224)
Q Consensus       209 A~~~ferAL~l~P~  222 (224)
                      |++-|++.+.++|.
T Consensus       187 aleDyKki~E~dPs  200 (271)
T KOG4234|consen  187 ALEDYKKILESDPS  200 (271)
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999999999995

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.98  E-value=1.9e-05  Score=47.50  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD  188 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d  188 (224)
                      |.+++.+|.+++ .+|++++|+++|++|++++|+|
T Consensus         1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence            355666666665 4666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=5.3e-05  Score=67.86  Aligned_cols=88  Identities=14%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +.+++|+++|+..|+-||.|..++----.++. .+|+.-+|++.+..-++.-++|+++|..++.+|+. .++|++|.-+|
T Consensus       100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~kA~fCl  177 (289)
T KOG3060|consen  100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFEKAAFCL  177 (289)
T ss_pred             hchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHHHHHHHH
Confidence            68899999999999999999877765333454 68999999999999999999999999999998876 47899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +..+-++|.+
T Consensus       178 EE~ll~~P~n  187 (289)
T KOG3060|consen  178 EELLLIQPFN  187 (289)
T ss_pred             HHHHHcCCCc
Confidence            9999999975

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=2e-05  Score=74.50  Aligned_cols=86  Identities=14%  Similarity=0.087  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      |++..|.++|-.||.+||+|.    .++.|.|.+.. +.|+..+|+.-++.|+.+||.+-.++...|.++..+ +++++|
T Consensus       263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l-e~~e~A  340 (486)
T KOG0550|consen  263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL-EKWEEA  340 (486)
T ss_pred             cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            688999999999999999974    67888888876 799999999999999999999999999999998775 579999


Q ss_pred             HHHHHHHHHhCC
Q 027404          210 KSYFDRAVHSAP  221 (224)
Q Consensus       210 ~~~ferAL~l~P  221 (224)
                      ++.|++|++..-
T Consensus       341 V~d~~~a~q~~~  352 (486)
T KOG0550|consen  341 VEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHhhcc
Confidence            999999998754

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.95  E-value=1.7e-05  Score=48.24  Aligned_cols=34  Identities=29%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD  188 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d  188 (224)
                      +.+|+++|.++. .++++++|+.+|++||+++|++
T Consensus         1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence            356666666665 4677777777777777776653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.93  E-value=0.00014  Score=65.23  Aligned_cols=89  Identities=17%  Similarity=0.223  Sum_probs=79.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCh
Q 027404          133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDA  206 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~  206 (224)
                      .++|..|+..|+.-|..-|+.+   .++|.||..++ .+|+++.|..+|.++++-.|++   +++++.+|.++..+ ++.
T Consensus       154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l-~~~  231 (262)
T COG1729         154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL-GNT  231 (262)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh-cCH
Confidence            3689999999999999999985   89999999999 6999999999999999988865   57799999988764 679


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027404          207 PRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       207 eeA~~~ferAL~l~P~d  223 (224)
                      ++|-..|++.++--|+.
T Consensus       232 d~A~atl~qv~k~YP~t  248 (262)
T COG1729         232 DEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHHHHHHHCCCC
Confidence            99999999999988863

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.93  E-value=0.00013  Score=61.94  Aligned_cols=90  Identities=19%  Similarity=0.245  Sum_probs=69.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc---
Q 027404          133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINH---  203 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~---al~~lG~ll~~~~---  203 (224)
                      .+++.+|+..|++.+...|..+   .+++.+|.+++ ..+++++|+..|++.|+..|+++.   +++.+|.+.+...   
T Consensus        18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~   96 (203)
T PF13525_consen   18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI   96 (203)
T ss_dssp             CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence            3789999999999999999874   78899999988 699999999999999999998754   6777776654432   


Q ss_pred             -------CChHHHHHHHHHHHHhCCCC
Q 027404          204 -------KDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       204 -------gd~eeA~~~ferAL~l~P~d  223 (224)
                             ....+|+..|+..++.-|+.
T Consensus        97 ~~~~~D~~~~~~A~~~~~~li~~yP~S  123 (203)
T PF13525_consen   97 LRSDRDQTSTRKAIEEFEELIKRYPNS  123 (203)
T ss_dssp             H-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred             hhcccChHHHHHHHHHHHHHHHHCcCc
Confidence                   12458999999999999874

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.91  E-value=0.00012  Score=69.14  Aligned_cols=80  Identities=19%  Similarity=0.157  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++..+|++.+.++|..+|++++++...|.++. ..++++.|++++++|+.+.|++-..|..|+.+|.. .+++++|+..+
T Consensus       214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALlaL  291 (395)
T PF09295_consen  214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFENALLAL  291 (395)
T ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            56789999999999999999999999999998 69999999999999999999999999999999876 57999999777


Q ss_pred             HH
Q 027404          214 DR  215 (224)
Q Consensus       214 er  215 (224)
                      ..
T Consensus       292 Ns  293 (395)
T PF09295_consen  292 NS  293 (395)
T ss_pred             hc
Confidence            53

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.91  E-value=0.00023  Score=56.91  Aligned_cols=81  Identities=16%  Similarity=0.208  Sum_probs=69.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCh
Q 027404          133 GKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDA  206 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~  206 (224)
                      .++...+...+++.+..+|+.   ..+.+.+|.+++ ..|++++|+..|++++...|++   ..+...++.+++. .+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCH
Confidence            467888999999999999999   477788999988 5999999999999999988766   3466778888776 5789


Q ss_pred             HHHHHHHHH
Q 027404          207 PRAKSYFDR  215 (224)
Q Consensus       207 eeA~~~fer  215 (224)
                      ++|+..++.
T Consensus       102 d~Al~~L~~  110 (145)
T PF09976_consen  102 DEALATLQQ  110 (145)
T ss_pred             HHHHHHHHh
Confidence            999999966

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.90  E-value=8.5e-05  Score=59.08  Aligned_cols=68  Identities=19%  Similarity=0.093  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      |.+++++|+++. ..|+.++|+.+|++|++..+..   ..++..+|..+.. .|++++|+.+|++++...|++
T Consensus         1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~   71 (120)
T PF12688_consen    1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDD   71 (120)
T ss_pred             CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCc
Confidence            357899999886 7999999999999999986655   4577788888865 589999999999999988873

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.90  E-value=0.00017  Score=59.24  Aligned_cols=90  Identities=20%  Similarity=0.175  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc---
Q 027404          133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINH---  203 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~---al~~lG~ll~~~~---  203 (224)
                      .+++++|++.|+......|..+   .+...++.+++ ..+++++|+..+++-|+++|+|+.   |++..|...+.+.   
T Consensus        23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~  101 (142)
T PF13512_consen   23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS  101 (142)
T ss_pred             hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence            3789999999999999999875   78888898888 699999999999999999999876   4555665554421   


Q ss_pred             -----------CChHHHHHHHHHHHHhCCCC
Q 027404          204 -----------KDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       204 -----------gd~eeA~~~ferAL~l~P~d  223 (224)
                                 ....+|...|++.|+.-|+.
T Consensus       102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen  102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence                       11678999999999998874

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.90  E-value=8.4e-05  Score=68.63  Aligned_cols=87  Identities=15%  Similarity=0.169  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .++++|..++.+|++.||++.-+-.-+|.+.. ..|+|++|++.++++++.||++ ++++..+-.+|.+ .|+.++.+.+
T Consensus       194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~~~~f  271 (389)
T COG2956         194 SDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAEGLNF  271 (389)
T ss_pred             hhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHHHHHH
Confidence            45666666666666666666666666666655 4666666666666666666655 3344444445443 3556666666


Q ss_pred             HHHHHHhCCC
Q 027404          213 FDRAVHSAPD  222 (224)
Q Consensus       213 ferAL~l~P~  222 (224)
                      +.++++..++
T Consensus       272 L~~~~~~~~g  281 (389)
T COG2956         272 LRRAMETNTG  281 (389)
T ss_pred             HHHHHHccCC
Confidence            6666665543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.88  E-value=5e-05  Score=73.70  Aligned_cols=86  Identities=26%  Similarity=0.345  Sum_probs=68.7

Q ss_pred             CCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHH
Q 027404          132 SGKESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK-----PGDGN---VLSMY  195 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~--------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld-----P~da~---al~~l  195 (224)
                      ..+++.+|+..|++|+.+        +|.-+.++.|||.+++ .+|++++|+.|+++|+++-     .++++   .+.++
T Consensus       253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~  331 (508)
T KOG1840|consen  253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL  331 (508)
T ss_pred             HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence            337999999999999976        4444689999999887 7999999999999999762     23444   45566


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHh
Q 027404          196 GDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       196 G~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      +.++ ..++++++|+.+|++++++
T Consensus       332 ~~~~-~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  332 AAIL-QSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             HHHH-HHhcchhHHHHHHHHHHHH
Confidence            6555 4467899999999999985

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=9.4e-05  Score=69.52  Aligned_cols=87  Identities=13%  Similarity=0.110  Sum_probs=73.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++.+|+.++.++|+.+|+|.-++|--|.++. ..++++.|+..|++|++++|+|..+...+..+....+...+....+|
T Consensus       271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y  349 (397)
T KOG0543|consen  271 KEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY  349 (397)
T ss_pred             hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999987 69999999999999999999999998887765443333344557788


Q ss_pred             HHHHHhCC
Q 027404          214 DRAVHSAP  221 (224)
Q Consensus       214 erAL~l~P  221 (224)
                      .+++..-+
T Consensus       350 ~~mF~k~~  357 (397)
T KOG0543|consen  350 ANMFAKLA  357 (397)
T ss_pred             HHHhhccc
Confidence            88776543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.86  E-value=0.00022  Score=58.69  Aligned_cols=84  Identities=18%  Similarity=0.160  Sum_probs=70.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----GNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d----a~al~~lG~ll~~~~gd~eeA  209 (224)
                      ++.+.|++.|.+||.+-|.++.+|+|-|.++. .+|+.++|+.-+++|+++.-.-    +.++...|.++ .+.|+-++|
T Consensus        57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly-Rl~g~dd~A  134 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY-RLLGNDDAA  134 (175)
T ss_pred             cchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHhCchHHH
Confidence            58899999999999999999999999999987 7999999999999999986543    34555566554 556788999


Q ss_pred             HHHHHHHHHh
Q 027404          210 KSYFDRAVHS  219 (224)
Q Consensus       210 ~~~ferAL~l  219 (224)
                      ..-|+.|-++
T Consensus       135 R~DFe~AA~L  144 (175)
T KOG4555|consen  135 RADFEAAAQL  144 (175)
T ss_pred             HHhHHHHHHh
Confidence            9999888765

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.86  E-value=6.7e-05  Score=77.00  Aligned_cols=90  Identities=22%  Similarity=0.122  Sum_probs=78.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCChHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN--HKDAPRAK  210 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~--~gd~eeA~  210 (224)
                      ..+|++|++..+++|+.||+|..++..+|.++....++.++|.++|..|++++|++..||-.++++|-..  --+++++-
T Consensus        15 nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~   94 (1238)
T KOG1127|consen   15 NKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAA   94 (1238)
T ss_pred             hccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhH
Confidence            3689999999999999999999999999999986555699999999999999999999999999876431  13578899


Q ss_pred             HHHHHHHHhCCC
Q 027404          211 SYFDRAVHSAPD  222 (224)
Q Consensus       211 ~~ferAL~l~P~  222 (224)
                      .+|.+++-+.|+
T Consensus        95 ~~yq~~~l~le~  106 (1238)
T KOG1127|consen   95 KCYQRAVLILEN  106 (1238)
T ss_pred             HHHHHHHHhhhh
Confidence            999999887765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.85  E-value=4e-05  Score=69.21  Aligned_cols=89  Identities=18%  Similarity=0.205  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ..+..|...|+...+..+..+.+++.+|.+.. .+|++++|++.++.|+..+|++++++.++..+....++..+.+.+++
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            45688999999988777888999999998877 69999999999999999999999999999877666544447788899


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      .+....+|++
T Consensus       260 ~qL~~~~p~h  269 (290)
T PF04733_consen  260 SQLKQSNPNH  269 (290)
T ss_dssp             HHCHHHTTTS
T ss_pred             HHHHHhCCCC
Confidence            8888888865

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.85  E-value=0.0001  Score=73.84  Aligned_cols=87  Identities=16%  Similarity=0.151  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP-GDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP-~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      .+.++.+.+++|++.+|+|+.+.+.+|..+. .+++.+.|..+.++++++++ +++.+|..++.++- ..+++.+|+...
T Consensus       459 ~h~kslqale~av~~d~~dp~~if~lalq~A-~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS-a~kr~~~Al~vv  536 (799)
T KOG4162|consen  459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYA-EQRQLTSALDYAREALALNRGDSAKAWHLLALVLS-AQKRLKEALDVV  536 (799)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhhHHHHHHH
Confidence            4678999999999999999999999998776 68999999999999999955 56778999987765 467999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +.|+.--|+|
T Consensus       537 d~al~E~~~N  546 (799)
T KOG4162|consen  537 DAALEEFGDN  546 (799)
T ss_pred             HHHHHHhhhh
Confidence            9999887775

>PRK15331 chaperone protein SicA; Provisional

Probab=97.83  E-value=8.8e-05  Score=62.28  Aligned_cols=73  Identities=12%  Similarity=-0.024  Sum_probs=63.3

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 027404          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW  224 (224)
Q Consensus       150 dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d~  224 (224)
                      .++.-+..+.+|.-++ .+|++++|+..|+-+...+|.+++.|..||.++. +.++|++|+..|-.|..++++|+
T Consensus        33 s~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         33 PQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             CHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCC
Confidence            3444477788888888 5999999999999999999999999999998764 46789999999999999998874

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.82  E-value=4.5e-05  Score=67.38  Aligned_cols=92  Identities=15%  Similarity=0.087  Sum_probs=81.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       131 ~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      |+-|-+.-|.--|.+++.++|.-|++++-+|..+. ..|+++.|.+.|...+++||.+..+..+.|..++. .|+++-|.
T Consensus        76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LAq  153 (297)
T COG4785          76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLAQ  153 (297)
T ss_pred             hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhhH
Confidence            44567889999999999999999999999998876 69999999999999999999999999888877654 78999999


Q ss_pred             HHHHHHHHhCCCCC
Q 027404          211 SYFDRAVHSAPDDW  224 (224)
Q Consensus       211 ~~ferAL~l~P~d~  224 (224)
                      .-|.+--+.+|+|.
T Consensus       154 ~d~~~fYQ~D~~DP  167 (297)
T COG4785         154 DDLLAFYQDDPNDP  167 (297)
T ss_pred             HHHHHHHhcCCCCh
Confidence            99998888888874

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.82  E-value=7e-05  Score=76.48  Aligned_cols=89  Identities=19%  Similarity=0.233  Sum_probs=50.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCChHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPR  208 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~~gd~ee  208 (224)
                      .++|..+...+..|+...-+.+   +.+|.+|+.++ .+|++++|-.||.+|++.+|++ ...+.-+|..+.. .++++.
T Consensus       283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~-~~dle~  360 (1018)
T KOG2002|consen  283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK-RGDLEE  360 (1018)
T ss_pred             cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccCCCCccccccchhHHHHH-hchHHH
Confidence            3466666666666665553333   34666666654 4666666666666666666655 3344445544433 355666


Q ss_pred             HHHHHHHHHHhCCCC
Q 027404          209 AKSYFDRAVHSAPDD  223 (224)
Q Consensus       209 A~~~ferAL~l~P~d  223 (224)
                      |+.+|++.++..|++
T Consensus       361 s~~~fEkv~k~~p~~  375 (1018)
T KOG2002|consen  361 SKFCFEKVLKQLPNN  375 (1018)
T ss_pred             HHHHHHHHHHhCcch
Confidence            666666666666654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.82  E-value=8.2e-05  Score=76.00  Aligned_cols=89  Identities=19%  Similarity=0.298  Sum_probs=45.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---CChHHH
Q 027404          134 KESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH---KDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n-a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~---gd~eeA  209 (224)
                      |++++|..||.++++.+|++ ...++.+|.++. ..|+++.|+.||++.++..|++..++..+|.++....   ...++|
T Consensus       321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a  399 (1018)
T KOG2002|consen  321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA  399 (1018)
T ss_pred             ccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence            45555555555555555555 444555555544 3555555555555555555555555555554443320   023455


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      ..++.++++..|.|
T Consensus       400 ~~~l~K~~~~~~~d  413 (1018)
T KOG2002|consen  400 SNVLGKVLEQTPVD  413 (1018)
T ss_pred             HHHHHHHHhccccc
Confidence            55555555555543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=4.8e-05  Score=71.95  Aligned_cols=88  Identities=14%  Similarity=0.081  Sum_probs=71.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDAL------------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~------------~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~----al~~lG~  197 (224)
                      .+.+.|+.+|+++|.++|++..            ++..-|.-++ ..|.+.+|.++|..||.++|++..    .|.+.+.
T Consensus       217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f-k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~  295 (486)
T KOG0550|consen  217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF-KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL  295 (486)
T ss_pred             cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh-hccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence            6889999999999999999863            3344455555 589999999999999999998643    4566666


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          198 LIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +... .|+..+|+.-.+.|++++|.+
T Consensus       296 v~~r-Lgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  296 VNIR-LGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             hhcc-cCCchhhhhhhhhhhhcCHHH
Confidence            6654 478999999999999999864

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.78  E-value=8.8e-05  Score=76.19  Aligned_cols=73  Identities=22%  Similarity=0.309  Sum_probs=64.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|...|+++|++||+|+.++++||.++.+ . ++++|++++.+|++.              +.. .+++.++.+++
T Consensus       130 g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~--------------~i~-~kq~~~~~e~W  192 (906)
T PRK14720        130 NENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYR--------------FIK-KKQYVGIEEIW  192 (906)
T ss_pred             CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHH--------------HHh-hhcchHHHHHH
Confidence            789999999999999999999999999999875 5 999999999999988              223 34688888999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++.+..+|++
T Consensus       193 ~k~~~~~~~d  202 (906)
T PRK14720        193 SKLVHYNSDD  202 (906)
T ss_pred             HHHHhcCccc
Confidence            9988888876

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.78  E-value=7.1e-05  Score=44.97  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.+|..+|.+++. .+++++|+.+|++|++++|+|
T Consensus         1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence            4678899998876 579999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.00013  Score=71.07  Aligned_cols=83  Identities=20%  Similarity=0.261  Sum_probs=57.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|-+|-++-|....-..-+|.=+. +++.++-|+++|.+|+.+.|+|+-++..+|.+.+.. +.|.+|+.||
T Consensus       360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~-~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~-~~y~~A~~~f  437 (611)
T KOG1173|consen  360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM-RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY-EEYPEALKYF  437 (611)
T ss_pred             chHHHHHHHHHHHHHhccCCcchHHHHHHHHH-HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH-hhhHHHHHHH
Confidence            55666666666666666666555555554333 567777888888888888888888888888776653 5688888888


Q ss_pred             HHHHH
Q 027404          214 DRAVH  218 (224)
Q Consensus       214 erAL~  218 (224)
                      +.++.
T Consensus       438 ~~~l~  442 (611)
T KOG1173|consen  438 QKALE  442 (611)
T ss_pred             HHHHH
Confidence            87774

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.77  E-value=0.00011  Score=72.60  Aligned_cols=87  Identities=8%  Similarity=-0.007  Sum_probs=65.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |+.++|..+.+.+++.|+.....|+.||.++. ...+|.+|++||+.|+++.|++-.+|..++.+..+ .++++-....-
T Consensus        55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~~tr  132 (700)
T KOG1156|consen   55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYLETR  132 (700)
T ss_pred             cchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHHHHH
Confidence            56678888888888888888888888887665 57788888888888888888888888877765544 35666666666


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      .+.+++.|.
T Consensus       133 ~~LLql~~~  141 (700)
T KOG1156|consen  133 NQLLQLRPS  141 (700)
T ss_pred             HHHHHhhhh
Confidence            666666654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.77  E-value=3.6e-05  Score=54.75  Aligned_cols=51  Identities=22%  Similarity=0.260  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHH---CC-CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404          133 GKESESMDVYYQEMIKA---YP-ED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILA  184 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~---dP-~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l  184 (224)
                      .+++++|+.+|++|+++   .+ .+   +.++.++|.++. .+|++++|+++|++|+++
T Consensus        18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence            37999999999999965   22 22   578889999987 799999999999999986

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.75  E-value=0.00028  Score=62.99  Aligned_cols=70  Identities=21%  Similarity=0.120  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +...++..|..+....|++++|+..|++.|...|+.   +.+++.+|.+++. .+++++|+.+|+++++..|++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s  213 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKS  213 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence            456666666655334799999999999999999998   5799999998876 579999999999999999875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.00018  Score=66.45  Aligned_cols=88  Identities=16%  Similarity=0.123  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR  208 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na-----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ee  208 (224)
                      .+|++|+...++.+.+.+..-     ..+..||..+. ...+.++|...+.||++.||+...+-..+|.+... .|+|+.
T Consensus       155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~  232 (389)
T COG2956         155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQK  232 (389)
T ss_pred             hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHH
Confidence            578888888888888887763     34445555443 46789999999999999999999998899998765 689999


Q ss_pred             HHHHHHHHHHhCCCC
Q 027404          209 AKSYFDRAVHSAPDD  223 (224)
Q Consensus       209 A~~~ferAL~l~P~d  223 (224)
                      |++.++++++.||++
T Consensus       233 AV~~~e~v~eQn~~y  247 (389)
T COG2956         233 AVEALERVLEQNPEY  247 (389)
T ss_pred             HHHHHHHHHHhChHH
Confidence            999999999999975

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.72  E-value=9.5e-05  Score=68.65  Aligned_cols=88  Identities=16%  Similarity=0.105  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCChHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---DGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      ++.+.|..+|++.|+.-..+++.+.|+|.++. ..++++-++.+|+||+...-+   -+++|+++|.+... -||+.-|.
T Consensus       338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~nlA~  415 (478)
T KOG1129|consen  338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFNLAK  415 (478)
T ss_pred             CChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchHHHH
Confidence            56677777777777777777777777776655 567777777777777765432   35677777766544 46777777


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      .+|+-|+..||++
T Consensus       416 rcfrlaL~~d~~h  428 (478)
T KOG1129|consen  416 RCFRLALTSDAQH  428 (478)
T ss_pred             HHHHHHhccCcch
Confidence            7787777777764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.71  E-value=0.00035  Score=70.98  Aligned_cols=86  Identities=20%  Similarity=0.214  Sum_probs=79.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |+.++|...+..|-.++|.|.+.|.-++.... .+|.+.+|.-||.|||.++|.+-...+..+.++ +..|++.+|...|
T Consensus       187 Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~-~~~G~~~~Am~~f  264 (895)
T KOG2076|consen  187 GDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLY-QKTGDLKRAMETF  264 (895)
T ss_pred             ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHhChHHHHHHHH
Confidence            69999999999999999999999999999876 699999999999999999999998888888765 5578999999999


Q ss_pred             HHHHHhCC
Q 027404          214 DRAVHSAP  221 (224)
Q Consensus       214 erAL~l~P  221 (224)
                      .+++.++|
T Consensus       265 ~~l~~~~p  272 (895)
T KOG2076|consen  265 LQLLQLDP  272 (895)
T ss_pred             HHHHhhCC
Confidence            99999998

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.70  E-value=7.8e-05  Score=45.20  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.+|.++|.++.. .+++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence            4688999998866 578999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.65  E-value=0.00013  Score=71.96  Aligned_cols=88  Identities=18%  Similarity=0.144  Sum_probs=79.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++|.......++.|...|.|++.+...|..++ ..|+.++|..+.+.++..|+...-.|.-+|.++. ..++|++|+.+|
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCY   98 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHH
Confidence            46777888888899999999999999999887 7999999999999999999999999999997654 457899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +.|+++.|+|
T Consensus        99 ~nAl~~~~dN  108 (700)
T KOG1156|consen   99 RNALKIEKDN  108 (700)
T ss_pred             HHHHhcCCCc
Confidence            9999999987

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.63  E-value=0.0015  Score=49.50  Aligned_cols=86  Identities=21%  Similarity=0.257  Sum_probs=43.9

Q ss_pred             CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~-na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      ++++.|...+.+++...+. ...++.+++..+. ..+++++|..++.+++...|.....+..++..+. ..+.+++|...
T Consensus       181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  258 (291)
T COG0457         181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALEA  258 (291)
T ss_pred             cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHHH
Confidence            3455555555555555555 4555555554443 3445555555555555555554444444444444 33445555555


Q ss_pred             HHHHHHhCC
Q 027404          213 FDRAVHSAP  221 (224)
Q Consensus       213 ferAL~l~P  221 (224)
                      +.+++...|
T Consensus       259 ~~~~~~~~~  267 (291)
T COG0457         259 LEKALELDP  267 (291)
T ss_pred             HHHHHHhCc
Confidence            555555544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.61  E-value=0.0003  Score=62.85  Aligned_cols=85  Identities=22%  Similarity=0.234  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR  215 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fer  215 (224)
                      .+.|...|.+|++..+.+..+|..+|.+-+...++.+.|...|+++++.-|.+...|..|...+.. .++.+.|..+|++
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lfer   95 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALFER   95 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            677888888888655666778888887655335666668888888888888888888888777665 4678888888888


Q ss_pred             HHHhCC
Q 027404          216 AVHSAP  221 (224)
Q Consensus       216 AL~l~P  221 (224)
                      ++..-|
T Consensus        96 ~i~~l~  101 (280)
T PF05843_consen   96 AISSLP  101 (280)
T ss_dssp             HCCTSS
T ss_pred             HHHhcC
Confidence            876544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.58  E-value=5.7e-05  Score=72.26  Aligned_cols=88  Identities=20%  Similarity=0.111  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +.++.|+..|-+||+++|+++..+.+-+.++. +.+++..|+.-+.+||+++|....+|..-|.+... .+.+.+|...|
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~~l   95 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALLDL   95 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHHHH
Confidence            68999999999999999999988888876555 68999999999999999999999999988877654 56899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +....+.|++
T Consensus        96 ~~~~~l~Pnd  105 (476)
T KOG0376|consen   96 EKVKKLAPND  105 (476)
T ss_pred             HHhhhcCcCc
Confidence            9999999986

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.55  E-value=0.00036  Score=59.55  Aligned_cols=62  Identities=21%  Similarity=0.179  Sum_probs=48.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-----------DFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G-----------d~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      .-+++|+.=|++||.++|+...+++++|.++.. ++           -|++|..||++|.+.+|++......|-
T Consensus        49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            357889999999999999999999999998763 32           267899999999999999987665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.51  E-value=0.00099  Score=62.62  Aligned_cols=83  Identities=18%  Similarity=0.164  Sum_probs=70.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++...=++..++.+..+|++|.++..+|..++ .++.+.+|..+|+.||+..|.. ..+..+|.++.. .|+.++|.+.+
T Consensus       308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~-~g~~~~A~~~r  384 (400)
T COG3071         308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPSA-SDYAELADALDQ-LGEPEEAEQVR  384 (400)
T ss_pred             CCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHH-cCChHHHHHHH
Confidence            56677788899999999999999999999887 7999999999999999998854 455568888755 57899999999


Q ss_pred             HHHHHh
Q 027404          214 DRAVHS  219 (224)
Q Consensus       214 erAL~l  219 (224)
                      +.++.+
T Consensus       385 ~e~L~~  390 (400)
T COG3071         385 REALLL  390 (400)
T ss_pred             HHHHHH
Confidence            998854

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.51  E-value=0.0009  Score=58.85  Aligned_cols=69  Identities=14%  Similarity=0.002  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL---SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al---~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++..++..|.-+. ..|++++|++.|++++...|+.+.+.   ..+|.+++. .+++++|+.+|++.+++.|++
T Consensus        31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~  102 (243)
T PRK10866         31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTH  102 (243)
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCC
Confidence            5666777777776 58999999999999999999887664   678888776 578999999999999999986

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.49  E-value=0.00016  Score=66.75  Aligned_cols=65  Identities=15%  Similarity=0.331  Sum_probs=59.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~  197 (224)
                      ..|+.++|...|+.|++++|.+++++..+|.|.. ...+..+|-+||-+|+.++|.+..++.+.++
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            3478899999999999999999999999999986 5789999999999999999999999877653

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.46  E-value=0.001  Score=57.79  Aligned_cols=87  Identities=16%  Similarity=0.161  Sum_probs=73.2

Q ss_pred             CCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCChHHHH
Q 027404          134 KESESMDVYYQEMIK-AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD--GNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe-~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d--a~al~~lG~ll~~~~gd~eeA~  210 (224)
                      |++.+|..+|++++. +..+|+..+..+|.++. ..+++..|...+++..+.+|..  ++....+|+.+.. .|++++|+
T Consensus       103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Ae  180 (251)
T COG4700         103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAE  180 (251)
T ss_pred             hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHH
Confidence            688999999999986 78889999999999988 5899999999999999998863  4456667888754 67899999


Q ss_pred             HHHHHHHHhCCC
Q 027404          211 SYFDRAVHSAPD  222 (224)
Q Consensus       211 ~~ferAL~l~P~  222 (224)
                      ..|+.|+.--|+
T Consensus       181 safe~a~~~ypg  192 (251)
T COG4700         181 SAFEVAISYYPG  192 (251)
T ss_pred             HHHHHHHHhCCC
Confidence            999999987774

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.44  E-value=0.0011  Score=64.76  Aligned_cols=86  Identities=19%  Similarity=0.089  Sum_probs=74.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          130 GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       130 ~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      -+..+++++|..+..+||+.+|..++.+..-|.++. ..|++++|.++++.|-.+|+.|..+-...+..++ +.+++++|
T Consensus       204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L-Ra~~~e~A  281 (517)
T PF12569_consen  204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLL-RAGRIEEA  281 (517)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH-HCCCHHHH
Confidence            455689999999999999999999999999999997 6999999999999999999999877766665554 46889999


Q ss_pred             HHHHHHHH
Q 027404          210 KSYFDRAV  217 (224)
Q Consensus       210 ~~~ferAL  217 (224)
                      +..+..-.
T Consensus       282 ~~~~~~Ft  289 (517)
T PF12569_consen  282 EKTASLFT  289 (517)
T ss_pred             HHHHHhhc
Confidence            98876543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.42  E-value=0.00033  Score=70.03  Aligned_cols=85  Identities=9%  Similarity=-0.010  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      .++..|..+|.+++..+|+++++|+|++.++. +.++..+|...+++|++-+-++-.+|-||-.+..+ -+.+++|+..|
T Consensus       533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi-~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd-vge~eda~~A~  610 (777)
T KOG1128|consen  533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI-RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD-VGEFEDAIKAY  610 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH-HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh-cccHHHHHHHH
Confidence            68899999999999999999999999999887 79999999999999999999999999998777665 46899999999


Q ss_pred             HHHHHhC
Q 027404          214 DRAVHSA  220 (224)
Q Consensus       214 erAL~l~  220 (224)
                      .+.+.+.
T Consensus       611 ~rll~~~  617 (777)
T KOG1128|consen  611 HRLLDLR  617 (777)
T ss_pred             HHHHHhh
Confidence            9988764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.41  E-value=0.0002  Score=66.84  Aligned_cols=89  Identities=17%  Similarity=0.150  Sum_probs=75.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e---~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      ++|.++.+.+++.++.+|.-+.+.++.-.+++.   .-+++.+|++.+.++|.++|+|++++...+.+++. ...|++|+
T Consensus       283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~-dE~YD~AI  361 (504)
T KOG0624|consen  283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG-DEMYDDAI  361 (504)
T ss_pred             hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-hHHHHHHH
Confidence            688899999999999999988777765444332   35789999999999999999999999999888764 45799999


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      .-|++|..+++++
T Consensus       362 ~dye~A~e~n~sn  374 (504)
T KOG0624|consen  362 HDYEKALELNESN  374 (504)
T ss_pred             HHHHHHHhcCccc
Confidence            9999999999976

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.40  E-value=0.0038  Score=47.31  Aligned_cols=86  Identities=23%  Similarity=0.304  Sum_probs=49.8

Q ss_pred             CCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYP---EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-DGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP---~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~-da~al~~lG~ll~~~~gd~eeA  209 (224)
                      ++++.|..+|.+++..+|   .....+..++..+. ..++++.|+..+.+++...+. ...++..++..+.. .+++++|
T Consensus       144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a  221 (291)
T COG0457         144 GDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEEA  221 (291)
T ss_pred             CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cccHHHH
Confidence            566666666666666555   23344444444333 356666666666666666666 45555555555433 3456666


Q ss_pred             HHHHHHHHHhCC
Q 027404          210 KSYFDRAVHSAP  221 (224)
Q Consensus       210 ~~~ferAL~l~P  221 (224)
                      +.++.+++...|
T Consensus       222 ~~~~~~~~~~~~  233 (291)
T COG0457         222 LEYYEKALELDP  233 (291)
T ss_pred             HHHHHHHHhhCc
Confidence            666666666655

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.39  E-value=0.00012  Score=53.05  Aligned_cols=52  Identities=13%  Similarity=0.277  Sum_probs=43.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404          168 RGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       168 ~Gd~eeAe~~~erAL~ldP~--da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P  221 (224)
                      +++++.|+.+|+++++.+|.  +..++..+|.+++. .+++++|+.++++ ++.+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~   55 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDP   55 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCC
Confidence            68999999999999999995  46667778999887 5789999999988 65554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.37  E-value=0.0016  Score=62.89  Aligned_cols=65  Identities=22%  Similarity=0.173  Sum_probs=53.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI  199 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll  199 (224)
                      +++++|..+|-+.-.+--+++++++.+|.++. ...+...|+++|.+|..+-|+|+.++..+|.+|
T Consensus       538 ~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dly  602 (840)
T KOG2003|consen  538 GNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLY  602 (840)
T ss_pred             cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence            78888888888877777788888888888764 688888888888888888888888888777653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.32  E-value=0.00066  Score=69.98  Aligned_cols=85  Identities=11%  Similarity=0.029  Sum_probs=76.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++..|+.+||.|++.+|.|...|..+|.+|. ..|++..|++.|.||..++|.+-.+.+.-+..... .|.|.+|+..
T Consensus       575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~-~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-~GkYkeald~  652 (1238)
T KOG1127|consen  575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP-ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-NGKYKEALDA  652 (1238)
T ss_pred             ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH-hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-hhhHHHHHHH
Confidence            478999999999999999999999999999987 69999999999999999999998888878876666 4679999999


Q ss_pred             HHHHHHh
Q 027404          213 FDRAVHS  219 (224)
Q Consensus       213 ferAL~l  219 (224)
                      +...+..
T Consensus       653 l~~ii~~  659 (1238)
T KOG1127|consen  653 LGLIIYA  659 (1238)
T ss_pred             HHHHHHH
Confidence            9887754

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.32  E-value=0.00046  Score=41.58  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027404          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKP  186 (224)
Q Consensus       155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP  186 (224)
                      .+|+.+|.++. ..|++++|+.+|++|++++|
T Consensus         2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence            35555665554 36666666666666666655

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.29  E-value=0.0012  Score=64.37  Aligned_cols=67  Identities=24%  Similarity=0.197  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .+++.+|..+. ..|++++|++++++||+..|..++.+..-|.++-+ .|++++|.++++.|..+|+.|
T Consensus       195 w~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  195 WTLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhh
Confidence            34566787765 79999999999999999999999999999998866 689999999999999999865

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.18  E-value=0.0034  Score=56.12  Aligned_cols=88  Identities=20%  Similarity=0.295  Sum_probs=70.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCChHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da---~al~~lG~ll~~~~gd~eeA~  210 (224)
                      ++.+.|...|+++++..|.+..+|..|..++. ..+|.+.|...|+|++..-|.+.   .+|..+..+- ...|+.+...
T Consensus        50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE-~~~Gdl~~v~  127 (280)
T PF05843_consen   50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE-SKYGDLESVR  127 (280)
T ss_dssp             S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH-HHHS-HHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHcCCHHHHH
Confidence            56777999999999999999999999999997 69999999999999998877665   4565555543 3458999999


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      .+++++.++-|++
T Consensus       128 ~v~~R~~~~~~~~  140 (280)
T PF05843_consen  128 KVEKRAEELFPED  140 (280)
T ss_dssp             HHHHHHHHHTTTS
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999988763

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0023  Score=61.04  Aligned_cols=62  Identities=15%  Similarity=0.032  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      ++++.|..+-+++|+.||++..++..-|.++. ..++.++|+-.|+.|+.+.|.+-+.|.-+-
T Consensus       314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~-~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~  375 (564)
T KOG1174|consen  314 KKFERALNFVEKCIDSEPRNHEALILKGRLLI-ALERHTQAVIAFRTAQMLAPYRLEIYRGLF  375 (564)
T ss_pred             hhHHHHHHHHHHHhccCcccchHHHhccHHHH-hccchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            67888888888889999988888888888887 588888888888888888887776654443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.15  E-value=0.0034  Score=60.85  Aligned_cols=86  Identities=13%  Similarity=0.255  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027404          137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (224)
Q Consensus       137 e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferA  216 (224)
                      .+-...|++|+...+.|...|.+|..+.. ..+.+.+--..|.+++..+|+++++|..-|.-.+..+..++.|.+.|-++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            35567899999999999999999998775 46668899999999999999999999877766666655699999999999


Q ss_pred             HHhCCCC
Q 027404          217 VHSAPDD  223 (224)
Q Consensus       217 L~l~P~d  223 (224)
                      |+.+|+.
T Consensus       167 LR~npds  173 (568)
T KOG2396|consen  167 LRFNPDS  173 (568)
T ss_pred             hhcCCCC
Confidence            9999975

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.15  E-value=0.0073  Score=45.55  Aligned_cols=75  Identities=15%  Similarity=0.041  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD--GNVLSMYGDLIWINHKDAPRAKSYFDR  215 (224)
Q Consensus       139 A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d--a~al~~lG~ll~~~~gd~eeA~~~fer  215 (224)
                      .+..++++++.+|+|..+.+.+|..+. ..|++++|++.+..+++.++++  ..+.-.+-.++-. .|.-+.-..-|++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~plv~~~RR   83 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGDPLVSEYRR   83 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-HHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCChHHHHHHH
Confidence            456899999999999999999999887 6999999999999999999876  4444444334333 3443334444444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.14  E-value=0.00062  Score=44.06  Aligned_cols=30  Identities=10%  Similarity=0.158  Sum_probs=28.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAK  162 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~  162 (224)
                      .|++++|+++|+++|+.+|+|+.++..||.
T Consensus        14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen   14 LGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            379999999999999999999999999885

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.11  E-value=0.001  Score=40.03  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.+|..+|.++.. .+++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQ-LGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            4678899988866 689999999999999999954

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.11  E-value=0.0048  Score=52.34  Aligned_cols=69  Identities=19%  Similarity=0.168  Sum_probs=55.0

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++..++..|..++ ..|++.+|+..|++.+...|..   +.++..+|.+++. .+++++|+..|++.++..|++
T Consensus         4 ~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~   75 (203)
T PF13525_consen    4 TAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNS   75 (203)
T ss_dssp             -HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence            4578888888887 6999999999999999998864   5577888888876 579999999999999999975

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.08  E-value=0.003  Score=63.11  Aligned_cols=98  Identities=15%  Similarity=0.109  Sum_probs=72.2

Q ss_pred             cCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027404          124 LGGGGD-GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN  202 (224)
Q Consensus       124 ~~~~~~-~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~  202 (224)
                      .+.+++ +-..++.++|++++++||+..|+.+.+|..+|.++. .+++.+.|...|..-++.=|+....|..++.+- ..
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek  731 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EK  731 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HH
Confidence            344543 333367888888888888888888888888888875 678888888888888888887777777777643 33


Q ss_pred             cCChHHHHHHHHHHHHhCCCC
Q 027404          203 HKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       203 ~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .+..-+|...|+++.-.||.+
T Consensus       732 ~~~~~rAR~ildrarlkNPk~  752 (913)
T KOG0495|consen  732 DGQLVRARSILDRARLKNPKN  752 (913)
T ss_pred             hcchhhHHHHHHHHHhcCCCc
Confidence            456777777777777777764

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.0051  Score=55.41  Aligned_cols=87  Identities=17%  Similarity=0.261  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHHHHHH--------HCCCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404          134 KESESMDVYYQEMIK--------AYPEDAL----------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY  195 (224)
Q Consensus       134 ~d~e~A~~~yerALe--------~dP~na~----------~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l  195 (224)
                      +++.+|...|+.||.        ..|.+++          .+.||+.++. ..++|-+++++....+...|.+..||+..
T Consensus       192 ~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~frR  270 (329)
T KOG0545|consen  192 GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYFRR  270 (329)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            688999999999964        2566654          5679999886 68999999999999999999999999988


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          196 GDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       196 G~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      |.+.... =+.++|.+-|.++++++|.
T Consensus       271 akAhaa~-Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  271 AKAHAAV-WNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHHHHhh-cCHHHHHHHHHHHHhcChh
Confidence            8766443 2479999999999999984

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.98  E-value=0.00022  Score=66.08  Aligned_cols=86  Identities=16%  Similarity=0.040  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +.++.|+++|-+||+++|..+..+..-+.++. ..++..+|++-|..||.++|+-+.-|-.-+.+.. +.+++++|..+|
T Consensus       128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r-llg~~e~aa~dl  205 (377)
T KOG1308|consen  128 GEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER-LLGNWEEAAHDL  205 (377)
T ss_pred             cchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHHH-HhhchHHHHHHH
Confidence            57999999999999999999999999999987 5889999999999999999998876655554433 357899999999


Q ss_pred             HHHHHhCC
Q 027404          214 DRAVHSAP  221 (224)
Q Consensus       214 erAL~l~P  221 (224)
                      +.|.+++-
T Consensus       206 ~~a~kld~  213 (377)
T KOG1308|consen  206 ALACKLDY  213 (377)
T ss_pred             HHHHhccc
Confidence            99998764

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.98  E-value=0.0079  Score=47.59  Aligned_cols=62  Identities=19%  Similarity=0.184  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (224)
Q Consensus       155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~  218 (224)
                      .++..++.++. ..|++++|+.++++++.++|.+..++..+-.++.. .|+..+|+.+|++..+
T Consensus        63 ~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~-~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAA-QGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence            34445665555 58999999999999999999999999888777765 6889999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.98  E-value=0.0018  Score=58.50  Aligned_cols=88  Identities=11%  Similarity=0.023  Sum_probs=69.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      ++++.|.+.++++-+.+.+...+...-|++-. ..|  .+.+|..+|+.....-+..+..+..++.+... .|++++|++
T Consensus       145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~  222 (290)
T PF04733_consen  145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEE  222 (290)
T ss_dssp             T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHH
Confidence            68899999999999998887776666676655 455  58899999999877767888888888877765 689999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      .+++|+..+|++
T Consensus       223 ~L~~al~~~~~~  234 (290)
T PF04733_consen  223 LLEEALEKDPND  234 (290)
T ss_dssp             HHHHHCCC-CCH
T ss_pred             HHHHHHHhccCC
Confidence            999999999875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.98  E-value=0.0021  Score=59.58  Aligned_cols=56  Identities=20%  Similarity=0.303  Sum_probs=51.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.|+.++|...|+.|++++|.+++++..+|.+. +..++.-+|..+|-+|+.++|.+
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~-E~~~~iv~ADq~Y~~ALtisP~n  183 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFR-EMHNEIVEADQCYVKALTISPGN  183 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHH-HhhhhhHhhhhhhheeeeeCCCc
Confidence            589999999999999999999999999999876 44678999999999999999975

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.91  E-value=0.0042  Score=55.23  Aligned_cols=83  Identities=20%  Similarity=0.231  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHHHHH--CCCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHH
Q 027404          135 ESESMDVYYQEMIKA--YPED----ALVLANYAKFLKEIR-GDFVKAEEYCGRAILAKP--GD----GNVLSMYGDLIWI  201 (224)
Q Consensus       135 d~e~A~~~yerALe~--dP~n----a~~l~nlA~~l~e~~-Gd~eeAe~~~erAL~ldP--~d----a~al~~lG~ll~~  201 (224)
                      ++++|+.+|++|+++  .-++    +.++.++|.++. .. +++++|+++|++|+++--  +.    ...+..++.++..
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence            888999999999986  3333    368889999875 56 899999999999998621  11    2345567777665


Q ss_pred             HcCChHHHHHHHHHHHHh
Q 027404          202 NHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l  219 (224)
                       .++|++|++.|++....
T Consensus       168 -l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  168 -LGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             -TT-HHHHHHHHHHHHHT
T ss_pred             -hCCHHHHHHHHHHHHHH
Confidence             57999999999998864

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.011  Score=53.53  Aligned_cols=87  Identities=20%  Similarity=0.163  Sum_probs=68.4

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      .+..|--+|+..-+.-|-.+..++..|.+.. .++++++|+..++.|+..++++++++.++-.+..+.+.+.+--..+..
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            4778888899998878888999999998876 699999999999999999999999999987666555554444444555


Q ss_pred             HHHHhCCC
Q 027404          215 RAVHSAPD  222 (224)
Q Consensus       215 rAL~l~P~  222 (224)
                      +.....|+
T Consensus       267 QLk~~~p~  274 (299)
T KOG3081|consen  267 QLKLSHPE  274 (299)
T ss_pred             HHHhcCCc
Confidence            55555554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.82  E-value=0.015  Score=47.87  Aligned_cols=68  Identities=15%  Similarity=0.056  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +..++.-|.-.. ..|+|++|++.|+.....-|..   ..+...++.+++. .+++++|++.+++-|+++|++
T Consensus        10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~h   80 (142)
T PF13512_consen   10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTH   80 (142)
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            466777777666 5899999999999999987754   5577788888876 578999999999999999986

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.80  E-value=0.0025  Score=39.63  Aligned_cols=27  Identities=33%  Similarity=0.582  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          156 VLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      ++.++|.++. .+|++++|+++|++|+.
T Consensus         1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYR-QQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHH-HCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence            4677787776 58888888888888543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.79  E-value=0.0023  Score=35.38  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027404          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPG  187 (224)
Q Consensus       156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~  187 (224)
                      +++++|.++. ..+++++|+.+|+++++++|+
T Consensus         3 ~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYL-KLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence            4555555554 356666666666666665554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.69  E-value=0.013  Score=55.31  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=73.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          130 GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       130 ~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      .--++++++|.+..++++...-+.- ....++. +  .-++...=++..++.++..|+++..+..+|.+++. ++.+.+|
T Consensus       273 li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~-l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA  347 (400)
T COG3071         273 LIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPR-L--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKA  347 (400)
T ss_pred             HHHcCChHHHHHHHHHHHHhccChh-HHHHHhh-c--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHH
Confidence            3344899999999999999866544 4444443 2  47899999999999999999999999999998765 6789999


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      ..+|+.|++..|..
T Consensus       348 ~~~leaAl~~~~s~  361 (400)
T COG3071         348 SEALEAALKLRPSA  361 (400)
T ss_pred             HHHHHHHHhcCCCh
Confidence            99999999998863

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.63  E-value=0.01  Score=40.79  Aligned_cols=41  Identities=22%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      +.++.+|..++ +.|+|++|.++.+++|++.|++.++.....
T Consensus         2 d~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    2 DCLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hhHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            46778888887 799999999999999999999999976543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.63  E-value=0.016  Score=55.78  Aligned_cols=87  Identities=23%  Similarity=0.267  Sum_probs=71.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCChH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGDLIWINHKDAP  207 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~----al~~lG~ll~~~~gd~e  207 (224)
                      ...+.+.|++.++.+.+.-|+.+..++.-|+++. .+|+.++|+++|++|+.....-.+    .++.++.++.. ..+++
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~  322 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWE  322 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHH
Confidence            4578999999999999999999999999999987 799999999999999964443332    34556665544 46899


Q ss_pred             HHHHHHHHHHHhC
Q 027404          208 RAKSYFDRAVHSA  220 (224)
Q Consensus       208 eA~~~ferAL~l~  220 (224)
                      +|..+|.+.++.+
T Consensus       323 ~A~~~f~~L~~~s  335 (468)
T PF10300_consen  323 EAAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.58  E-value=0.015  Score=51.76  Aligned_cols=88  Identities=18%  Similarity=0.155  Sum_probs=61.4

Q ss_pred             CCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH--HHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYP--ED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----GNV--LSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP--~n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d----a~a--l~~lG~ll~~  201 (224)
                      +++++|+.+|++|+++--  +.    ..++.++|.++. ..++|++|+..|++.+...-+.    ..+  ++..+.+++.
T Consensus       129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L  207 (282)
T PF14938_consen  129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL  207 (282)
T ss_dssp             --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence            689999999999998621  22    267778998887 6999999999999999753221    112  2222333344


Q ss_pred             HcCChHHHHHHHHHHHHhCCC
Q 027404          202 NHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~P~  222 (224)
                      ..+|+..|...|++...++|.
T Consensus       208 ~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  208 AMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HTT-HHHHHHHHHHHGTTSTT
T ss_pred             HcCCHHHHHHHHHHHHhhCCC
Confidence            468999999999999999885

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.58  E-value=0.017  Score=54.35  Aligned_cols=90  Identities=16%  Similarity=0.153  Sum_probs=70.4

Q ss_pred             CCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHH---
Q 027404          134 KESESMDVYYQEMIKA----YPEDALVLANYAKFLKEI---RGDFVKAEEYCGR-AILAKPGDGNVLSMYGDLIWIN---  202 (224)
Q Consensus       134 ~d~e~A~~~yerALe~----dP~na~~l~nlA~~l~e~---~Gd~eeAe~~~er-AL~ldP~da~al~~lG~ll~~~---  202 (224)
                      ++|+.-+.+.+..-.+    -++.+.+.+.||.++. +   .|+.++|+..+.. .....+.+++.+..+|.++-++   
T Consensus       155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~  233 (374)
T PF13281_consen  155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLE  233 (374)
T ss_pred             hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence            6777777666665555    4556788889998876 6   8999999999999 5566778899999999887432   


Q ss_pred             -----cCChHHHHHHHHHHHHhCCCCC
Q 027404          203 -----HKDAPRAKSYFDRAVHSAPDDW  224 (224)
Q Consensus       203 -----~gd~eeA~~~ferAL~l~P~d~  224 (224)
                           ....++|+.+|+++..++|+.|
T Consensus       234 s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  234 SNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             cCccchHHHHHHHHHHHHHHcCCcccc
Confidence                 1247899999999999998764

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.50  E-value=0.011  Score=48.89  Aligned_cols=60  Identities=23%  Similarity=0.226  Sum_probs=52.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404          160 YAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       160 lA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P  221 (224)
                      -|.++.+ .|+++.|++.|.+||.+.|..+.+|++.+..+. +.++.++|+.-+.+|+.+.-
T Consensus        49 ~~valaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag  108 (175)
T KOG4555|consen   49 KAIALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAG  108 (175)
T ss_pred             HHHHHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcC
Confidence            3555664 899999999999999999999999999998764 57889999999999999864

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.50  E-value=0.006  Score=35.97  Aligned_cols=31  Identities=32%  Similarity=0.372  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027404          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPG  187 (224)
Q Consensus       156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~  187 (224)
                      +++++|.++. ..|++++|+++|+++++..|+
T Consensus         2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHH-HccCHHHHHHHHHHHHHHCcC
Confidence            5566666655 466666666666666666665

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.50  E-value=0.029  Score=50.22  Aligned_cols=91  Identities=20%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHH---
Q 027404          132 SGKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV---LSMYGDLIWIN---  202 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a---l~~lG~ll~~~---  202 (224)
                      ..|++++|+.+|++.....|..+   .+...++.+++ ..++++.|+.++++-|.+.|+++.+   ++..|...+..   
T Consensus        46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            34799999999999999999987   67788888888 6999999999999999999988765   33334333211   


Q ss_pred             -cCC---hHHHHHHHHHHHHhCCCC
Q 027404          203 -HKD---APRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       203 -~gd---~eeA~~~ferAL~l~P~d  223 (224)
                       .+|   ..+|+..|+..|.--|+.
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHHCCCC
Confidence             122   346777777888877763

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.48  E-value=0.027  Score=56.93  Aligned_cols=85  Identities=8%  Similarity=0.050  Sum_probs=65.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na-----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~  201 (224)
                      .+++++|..++++|++..|...     .++..+|.++. ..|++++|+.++++++......      ..++.+++.+++.
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            4689999999999998655432     35567787776 6999999999999999764432      2345566766654


Q ss_pred             HcCChHHHHHHHHHHHHh
Q 027404          202 NHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l  219 (224)
                       .|++++|..++++++.+
T Consensus       544 -~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        544 -QGFLQAAYETQEKAFQL  560 (903)
T ss_pred             -CCCHHHHHHHHHHHHHH
Confidence             68999999999999875

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.41  E-value=0.018  Score=61.53  Aligned_cols=87  Identities=23%  Similarity=0.358  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~--da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +.+++|.++|+++++..-+-..+|..||.++. ++.+.++|...+.|||..-|.  |.....-.|.+-+. .||.+++..
T Consensus      1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGRt 1621 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGRT 1621 (1710)
T ss_pred             hcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhHH
Confidence            67889999999999998888899999999987 688889999999999999998  77788777776654 578888888


Q ss_pred             HHHHHHHhCCC
Q 027404          212 YFDRAVHSAPD  222 (224)
Q Consensus       212 ~ferAL~l~P~  222 (224)
                      +|+-.+...|.
T Consensus      1622 lfEgll~ayPK 1632 (1710)
T KOG1070|consen 1622 LFEGLLSAYPK 1632 (1710)
T ss_pred             HHHHHHhhCcc
Confidence            88888887774

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.36  E-value=0.0086  Score=56.29  Aligned_cols=61  Identities=13%  Similarity=0.036  Sum_probs=52.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404          159 NYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       159 nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P  221 (224)
                      .-|+-++ .+|.|++|+.||.++|+++|.++-.+.+.+.+|+.+ ++|..|+.-+..|+.++-
T Consensus       102 E~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~-K~FA~AE~DC~~AiaLd~  162 (536)
T KOG4648|consen  102 ERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ-KSFAQAEEDCEAAIALDK  162 (536)
T ss_pred             Hhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH-HHHHHHHHhHHHHHHhhH
Confidence            3455566 699999999999999999999999999999888875 579999999999998863

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.064  Score=49.10  Aligned_cols=88  Identities=16%  Similarity=0.124  Sum_probs=70.1

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHH---------------------------------
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYC---------------------------------  178 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~---------------------------------  178 (224)
                      ..+++..|...|..|++.+|.+.++...|+.++. ..|+.+.|...|                                 
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~  224 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD  224 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence            4478999999999999999999999999999887 588886544333                                 


Q ss_pred             -HHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404          179 -GRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       179 -erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P  221 (224)
                       ++.++.||+|.++.+.++..+. ..|+.++|.+.+-..++.+-
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcc
Confidence             2334578999999999998765 46889999998877776543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.25  E-value=0.016  Score=57.57  Aligned_cols=88  Identities=17%  Similarity=0.124  Sum_probs=76.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      |+-..|.+++++|+-..|... ..+.++|.++. .-+-.-.|-.++.+++.++-..+..++.+|+.++.+ .+.+.|++.
T Consensus       621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l-~~i~~a~~~  698 (886)
T KOG4507|consen  621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL-KNISGALEA  698 (886)
T ss_pred             CCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH-hhhHHHHHH
Confidence            678899999999999999876 46778998887 467778999999999999988888888899988765 579999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++|++++|++
T Consensus       699 ~~~a~~~~~~~  709 (886)
T KOG4507|consen  699 FRQALKLTTKC  709 (886)
T ss_pred             HHHHHhcCCCC
Confidence            99999999986

>smart00028 TPR Tetratricopeptide repeats

Probab=96.22  E-value=0.0084  Score=32.98  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       190 ~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .++..+|.+++. .+++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCC
Confidence            467788888776 478999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.20  E-value=0.018  Score=56.53  Aligned_cols=89  Identities=20%  Similarity=0.079  Sum_probs=76.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e--~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      ...+..|+.+|-+|++.-|.....+.|+|.++..  ..|+.-.|+.-+..|+++||....+++.|+.++..+ +++.+|+
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el-~r~~eal  465 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL-TRYLEAL  465 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH-hhHHHhh
Confidence            3567789999999999999999999999988763  235666888889999999999999999999998876 5799999


Q ss_pred             HHHHHHHHhCCC
Q 027404          211 SYFDRAVHSAPD  222 (224)
Q Consensus       211 ~~ferAL~l~P~  222 (224)
                      ++...+....|.
T Consensus       466 ~~~~alq~~~Pt  477 (758)
T KOG1310|consen  466 SCHWALQMSFPT  477 (758)
T ss_pred             hhHHHHhhcCch
Confidence            998888777774

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.025  Score=52.68  Aligned_cols=85  Identities=16%  Similarity=0.137  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      ++|..|...|-++|+..-.|+    .+|.|-|.+.+ ..|+|-.|+.-+.+|+.++|.|..+++.-+.+++.+. ++++|
T Consensus        95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe-~~~~a  172 (390)
T KOG0551|consen   95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE-RFAEA  172 (390)
T ss_pred             hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH-HHHHH
Confidence            688999999999999866654    56667777766 5899999999999999999999999998888888764 68999


Q ss_pred             HHHHHHHHHhC
Q 027404          210 KSYFDRAVHSA  220 (224)
Q Consensus       210 ~~~ferAL~l~  220 (224)
                      +.|.+..+.++
T Consensus       173 ~nw~ee~~~~d  183 (390)
T KOG0551|consen  173 VNWCEEGLQID  183 (390)
T ss_pred             HHHHhhhhhhh
Confidence            99988777654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.18  E-value=0.062  Score=54.07  Aligned_cols=88  Identities=22%  Similarity=0.326  Sum_probs=71.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +.++-|...|..||+.+|..-.+|...+.+-. ..|..+.-+..|++|+..-|.-...|.+|+.-.|.. ||...|...+
T Consensus       530 ~~~~carAVya~alqvfp~k~slWlra~~~ek-~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv~~ar~il  607 (913)
T KOG0495|consen  530 PAIECARAVYAHALQVFPCKKSLWLRAAMFEK-SHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDVPAARVIL  607 (913)
T ss_pred             chHHHHHHHHHHHHhhccchhHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCcHHHHHHH
Confidence            45677888888888888888888888777654 678888888888888888888888888888777764 7888888888


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      .+|++.+|+.
T Consensus       608 ~~af~~~pns  617 (913)
T KOG0495|consen  608 DQAFEANPNS  617 (913)
T ss_pred             HHHHHhCCCc
Confidence            8888888864

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.17  E-value=0.03  Score=53.81  Aligned_cols=88  Identities=14%  Similarity=0.090  Sum_probs=64.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCh
Q 027404          131 DSGKESESMDVYYQEMIKAYPE----DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDA  206 (224)
Q Consensus       131 ~~~~d~e~A~~~yerALe~dP~----na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~  206 (224)
                      ...++.++|+++|++|+.....    +...++.+++.+. .+.++++|..+|.+.++.+..-...|.+++.+.+...++.
T Consensus       278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            3448999999999999853332    2367778898876 6999999999999999987765555544443433445667


Q ss_pred             -------HHHHHHHHHHHHh
Q 027404          207 -------PRAKSYFDRAVHS  219 (224)
Q Consensus       207 -------eeA~~~ferAL~l  219 (224)
                             ++|.++|+++-.+
T Consensus       357 ~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  357 EEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhhhhhHHHHHHHHHHHHHH
Confidence                   8888888877554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.14  E-value=0.029  Score=44.33  Aligned_cols=49  Identities=16%  Similarity=0.035  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      +++++|+.++++++..||.|-.++..+-.++. .+|+..+|+++|++...
T Consensus        76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   76 GDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR  124 (146)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence            78999999999999999999999999998887 79999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.10  E-value=0.0074  Score=53.82  Aligned_cols=58  Identities=19%  Similarity=0.240  Sum_probs=51.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV  191 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a  191 (224)
                      .++.+.|.++|.+|+++-|..+..|+.+|... ++.|+++.|.+.|++.++++|.|...
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCcccccc
Confidence            46889999999999999999999999999765 58999999999999999999987543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.09  E-value=0.031  Score=55.53  Aligned_cols=81  Identities=9%  Similarity=-0.050  Sum_probs=53.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |++++|.+.++++- ..| +..+|..+..++. ..|+++.|+..+++++.+.|++...|..+..+|.. .|++++|.+.+
T Consensus       476 G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-~G~~~~A~~v~  551 (697)
T PLN03081        476 GLLDEAYAMIRRAP-FKP-TVNMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-SGRQAEAAKVV  551 (697)
T ss_pred             CCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-CCCHHHHHHHH
Confidence            56666666665541 223 3455666655555 57777888888888888888777777777766544 56788888887


Q ss_pred             HHHHH
Q 027404          214 DRAVH  218 (224)
Q Consensus       214 erAL~  218 (224)
                      +...+
T Consensus       552 ~~m~~  556 (697)
T PLN03081        552 ETLKR  556 (697)
T ss_pred             HHHHH
Confidence            76554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.07  E-value=0.029  Score=54.53  Aligned_cols=85  Identities=18%  Similarity=0.094  Sum_probs=64.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C----
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---------------------D----  188 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---------------------d----  188 (224)
                      .+..+-+++.++||+++|+.+.++.-+|.   +...-..+|+++|+||++....                     +    
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            57778889999999999999999998884   2345578899999998864221                     1    


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      ..+-..+|.+++.+ |+.+||++.|+..++.+|.
T Consensus       259 ~y~KrRLAmCarkl-Gr~~EAIk~~rdLlke~p~  291 (539)
T PF04184_consen  259 VYAKRRLAMCARKL-GRLREAIKMFRDLLKEFPN  291 (539)
T ss_pred             hhhHHHHHHHHHHh-CChHHHHHHHHHHHhhCCc
Confidence            11234567777764 7899999999999998885

The molecular function of this protein is uncertain.

>PRK10941 hypothetical protein; Provisional

Probab=96.05  E-value=0.048  Score=49.08  Aligned_cols=66  Identities=17%  Similarity=0.047  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .+.|+=.++. ..+++++|+++.++.+.++|+++.-+...|.++.+ .+.+..|..-++..++..|++
T Consensus       183 ml~nLK~~~~-~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        183 LLDTLKAALM-EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             HHHHHHHHHH-HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCc
Confidence            3445555554 68999999999999999999999999989987765 578999999999999999986

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.05  E-value=0.013  Score=56.18  Aligned_cols=85  Identities=14%  Similarity=0.087  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C--CHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKP----G--DGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP----~--da~al~~lG~ll~~  201 (224)
                      |+|+.|+.+-+.-|++.-...      .++.|+|.++. ..|+++.|+++|++++.+.-    .  .++..+.+|+.|..
T Consensus       209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl  287 (639)
T KOG1130|consen  209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL  287 (639)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence            789999988888877654432      57788998876 68999999999998875532    2  23445567887765


Q ss_pred             HcCChHHHHHHHHHHHHhC
Q 027404          202 NHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~  220 (224)
                      . .++++|+.|+.+-+++.
T Consensus       288 l-~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  288 L-KEVQKAITYHQRHLAIA  305 (639)
T ss_pred             H-HHHHHHHHHHHHHHHHH
Confidence            4 57999999999887763

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.03  E-value=0.048  Score=43.11  Aligned_cols=86  Identities=14%  Similarity=0.075  Sum_probs=66.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHc---CCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIR---GDF-------VKAEEYCGRAILAKPGDGNVLSMYGDLI  199 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~---Gd~-------eeAe~~~erAL~ldP~da~al~~lG~ll  199 (224)
                      +|++-+|.+..+..|..++++.   .++..-|.+++...   .+.       -.|+++|.+++.+.|+.+..++.+|.-+
T Consensus         9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l   88 (111)
T PF04781_consen    9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQL   88 (111)
T ss_pred             ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHh
Confidence            3689999999999999999987   55666676665322   222       2799999999999999999998888764


Q ss_pred             HHHcCChHHHHHHHHHHHHh
Q 027404          200 WINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       200 ~~~~gd~eeA~~~ferAL~l  219 (224)
                      -. ...|++++...+++|.+
T Consensus        89 ~s-~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   89 GS-VKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hh-HHHHHHHHHHHHHHhcc
Confidence            33 23588999999988864

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.00  E-value=0.048  Score=56.01  Aligned_cols=87  Identities=15%  Similarity=0.020  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++.+|..-..+.++..|+-..+..--|..+. ++|+.++|..+++..-...++|...+..+..+|.++ +.+++|..+|
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-~~~d~~~~~Y  100 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL-GKLDEAVHLY  100 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH-hhhhHHHHHH
Confidence            58999999999999999999888877777776 799999999888877777888888888888887664 6799999999


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      ++|+..+|.
T Consensus       101 e~~~~~~P~  109 (932)
T KOG2053|consen  101 ERANQKYPS  109 (932)
T ss_pred             HHHHhhCCc
Confidence            999999996

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.97  E-value=0.025  Score=48.98  Aligned_cols=62  Identities=18%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (224)
Q Consensus       139 A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~  201 (224)
                      |+.||.+|+.+.|.+...++.+|.+.. ..++.-.|+-||-|++...--++.+..++..++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            789999999999999999999998876 68999999999999998765568888888776644

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.025  Score=51.58  Aligned_cols=87  Identities=15%  Similarity=0.183  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHH----HC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChH
Q 027404          134 KESESMDVYYQEMIK----AY--PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP  207 (224)
Q Consensus       134 ~d~e~A~~~yerALe----~d--P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~e  207 (224)
                      ||.+.|..+|++.-+    ++  -++-.++.|.+.++. .+.++..|...|.+.+..||.++.+.++-|.++.. .|+..
T Consensus       226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY-lg~l~  303 (366)
T KOG2796|consen  226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY-LGKLK  303 (366)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHH-HHHHH
Confidence            566666666663221    11  122345555555443 45666666666666666666666666666655443 34566


Q ss_pred             HHHHHHHHHHHhCCC
Q 027404          208 RAKSYFDRAVHSAPD  222 (224)
Q Consensus       208 eA~~~ferAL~l~P~  222 (224)
                      +|+...++++.+.|.
T Consensus       304 DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  304 DALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHHHHHHHhccCCc
Confidence            666666666666664

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.93  E-value=0.02  Score=35.19  Aligned_cols=30  Identities=27%  Similarity=0.288  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILA  184 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l  184 (224)
                      +.++.++|.++. .+|++++|+.++++++++
T Consensus         2 a~~~~~la~~~~-~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYR-AQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence            356788888877 588888888888888865

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.90  E-value=0.015  Score=36.00  Aligned_cols=28  Identities=21%  Similarity=0.375  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404          191 VLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       191 al~~lG~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      +|.++|.++.. .|++++|+++|++++.+
T Consensus         1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQ-QGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            47789988765 68999999999996654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.88  E-value=0.075  Score=50.09  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=65.8

Q ss_pred             CCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----
Q 027404          133 GKESESMDVYYQEMI-KAYPEDALVLANYAKFLKEI--------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI----  199 (224)
Q Consensus       133 ~~d~e~A~~~yerAL-e~dP~na~~l~nlA~~l~e~--------~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll----  199 (224)
                      .|+.++|...+..++ ..++.+++++.-.|.++...        ....++|+.+|+++.+++|+..... |++.++    
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI-N~AtLL~~~g  273 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI-NAATLLMLAG  273 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHcC
Confidence            468899999999844 56777889999999887541        1236689999999999988653322 122211    


Q ss_pred             --------------------------------H---------HHcCChHHHHHHHHHHHHhCCCCC
Q 027404          200 --------------------------------W---------INHKDAPRAKSYFDRAVHSAPDDW  224 (224)
Q Consensus       200 --------------------------------~---------~~~gd~eeA~~~ferAL~l~P~d~  224 (224)
                                                      |         ...+++++|++++++++++.|..|
T Consensus       274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence                                            1         124789999999999999999876

>PLN03077 Protein ECB2; Provisional

Probab=95.87  E-value=0.059  Score=54.75  Aligned_cols=79  Identities=9%  Similarity=-0.008  Sum_probs=36.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |++++|.+.++++ ...|+ +.+|..+-.++. ..++.+.|+...+++++++|++...|..++++|.. .|++++|....
T Consensus       639 G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~-~g~~~~a~~vr  714 (857)
T PLN03077        639 GKLTEAYNFINKM-PITPD-PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD-AGKWDEVARVR  714 (857)
T ss_pred             CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-CCChHHHHHHH
Confidence            3444444444443 12332 233333333332 34555555555555555555555555555554433 34555555555


Q ss_pred             HHH
Q 027404          214 DRA  216 (224)
Q Consensus       214 erA  216 (224)
                      +..
T Consensus       715 ~~M  717 (857)
T PLN03077        715 KTM  717 (857)
T ss_pred             HHH
Confidence            433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.86  E-value=0.045  Score=53.31  Aligned_cols=95  Identities=17%  Similarity=0.167  Sum_probs=81.8

Q ss_pred             CCCC-CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027404          126 GGGD-GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK  204 (224)
Q Consensus       126 ~~~~-~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g  204 (224)
                      .||+ .-+++++.+|...|++||..|-.+..+|..|+.+-+ ......-|...+.||+.+-|--...|+-|-.. -...|
T Consensus        78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ym-EE~Lg  155 (677)
T KOG1915|consen   78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYM-EEMLG  155 (677)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH-HHHhc
Confidence            4554 667789999999999999999999999999999876 57788899999999999999988888877543 34557


Q ss_pred             ChHHHHHHHHHHHHhCCC
Q 027404          205 DAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       205 d~eeA~~~ferAL~l~P~  222 (224)
                      +..-|.+.|++-+...|+
T Consensus       156 Ni~gaRqiferW~~w~P~  173 (677)
T KOG1915|consen  156 NIAGARQIFERWMEWEPD  173 (677)
T ss_pred             ccHHHHHHHHHHHcCCCc
Confidence            899999999999998886

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.86  E-value=0.061  Score=48.41  Aligned_cols=65  Identities=28%  Similarity=0.317  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .|+.|.-++ ..|||..|+..|..-|+.-|+.   ++++++||.+++. +|++++|..+|..+++-.|+.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s  211 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKS  211 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCC
Confidence            556565566 5899999999999999998875   6688999999887 578999999999999988764

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.82  E-value=0.13  Score=46.92  Aligned_cols=81  Identities=14%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          142 YYQEMIKAYPEDALVLANYAKFLKEIRG-----------DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       142 ~yerALe~dP~na~~l~nlA~~l~e~~G-----------d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      -|.+.++.+|.|..+|..|..+......           -.+..+.+|+|||+.+|++...+..|=.+.... -+.++..
T Consensus         7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~-~~~~~l~   85 (321)
T PF08424_consen    7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV-WDSEKLA   85 (321)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHH
Confidence            4566666666666666666654432110           123555666666666666665554443333222 2445555


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      .-+++++..+|++
T Consensus        86 ~~we~~l~~~~~~   98 (321)
T PF08424_consen   86 KKWEELLFKNPGS   98 (321)
T ss_pred             HHHHHHHHHCCCC
Confidence            5666666666543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.044  Score=51.52  Aligned_cols=76  Identities=16%  Similarity=0.068  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHH-CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          137 ESMDVYYQEMIKA-YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       137 e~A~~~yerALe~-dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      ..-...+++.|-. ||+-|   .++..||--+. ..|-|.+|++..+||+++||.|+.+....+.++ ++.+++.++.++
T Consensus       154 ~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl-em~~r~Keg~eF  231 (491)
T KOG2610|consen  154 IGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVL-EMNGRHKEGKEF  231 (491)
T ss_pred             hhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHH-HhcchhhhHHHH
Confidence            3334455555544 55543   33344554444 366777777777777777777777666666655 335566666665


Q ss_pred             HH
Q 027404          213 FD  214 (224)
Q Consensus       213 fe  214 (224)
                      ..
T Consensus       232 M~  233 (491)
T KOG2610|consen  232 MY  233 (491)
T ss_pred             HH
Confidence            54

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.77  E-value=0.036  Score=41.79  Aligned_cols=50  Identities=18%  Similarity=0.073  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          173 KAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       173 eAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ..+.-++++++.+|+|..+.+.++..+.. .|++++|++.+-.+++.++++
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTC
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccc
Confidence            34677889999999999999999987754 789999999999999988864

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.64  E-value=0.061  Score=54.37  Aligned_cols=86  Identities=16%  Similarity=0.113  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHc
Q 027404          134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKP------GDGNVLSMYGDLIWINH  203 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP------~da~al~~lG~ll~~~~  203 (224)
                      ++.+.|..++.+.....+...    ..+.+++.++. .+|++++|+.+|++|+....      ..+.++..+|.+++. .
T Consensus       667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~-~  744 (903)
T PRK04841        667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI-LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ-Q  744 (903)
T ss_pred             CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-c
Confidence            566777777666654333322    22467888776 68999999999999998632      234467778877765 5


Q ss_pred             CChHHHHHHHHHHHHhCC
Q 027404          204 KDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       204 gd~eeA~~~ferAL~l~P  221 (224)
                      |+.++|..++++|+++..
T Consensus       745 G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        745 GRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             CCHHHHHHHHHHHHHHhC
Confidence            789999999999998764

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.63  E-value=0.02  Score=51.14  Aligned_cols=61  Identities=18%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 027404          162 KFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW  224 (224)
Q Consensus       162 ~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d~  224 (224)
                      ..+. ..+|.+.|.+.|.+|+++.|....-|+.+|... ...|+++.|...|++.++++|.|.
T Consensus         3 ~~~~-~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLA-ESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhc-ccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCcccc
Confidence            3344 479999999999999999999999999999754 557899999999999999999873

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.58  E-value=0.21  Score=43.81  Aligned_cols=85  Identities=16%  Similarity=0.132  Sum_probs=62.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRG--------DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN  202 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~n-a~~l~nlA~~l~e~~G--------d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~  202 (224)
                      ...+..+|..+|++|.+..-.. ..+.++++.++.  .|        +..+|..+|.+|....  ++.+...+|.++..-
T Consensus       125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G  200 (292)
T COG0790         125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG  200 (292)
T ss_pred             cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence            3458899999999998884444 345777777654  44        3447999999988876  778888888766432


Q ss_pred             ---cCChHHHHHHHHHHHHhC
Q 027404          203 ---HKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       203 ---~gd~eeA~~~ferAL~l~  220 (224)
                         ..++++|..||++|-+..
T Consensus       201 ~Gv~~d~~~A~~wy~~Aa~~g  221 (292)
T COG0790         201 LGVPRDLKKAFRWYKKAAEQG  221 (292)
T ss_pred             CCCCcCHHHHHHHHHHHHHCC
Confidence               247899999999988754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.56  E-value=0.073  Score=51.90  Aligned_cols=87  Identities=20%  Similarity=0.263  Sum_probs=68.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS--MYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~--~lG~ll~~~~gd~eeA~~  211 (224)
                      .++++...+|++-|+..|.|..+|..||.+-. ..||.+.|...|+-||....-+..-+.  .|-.+-.. .+.++.|..
T Consensus       451 ~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~-~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~-~~E~ekaR~  528 (677)
T KOG1915|consen  451 REFDRCRKLYEKFLEFSPENCYAWSKYAELET-SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE-EGEFEKARA  528 (677)
T ss_pred             hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh-cchHHHHHH
Confidence            78999999999999999999999999998754 799999999999999977554433322  23222222 467999999


Q ss_pred             HHHHHHHhCCC
Q 027404          212 YFDRAVHSAPD  222 (224)
Q Consensus       212 ~ferAL~l~P~  222 (224)
                      +|++.|...+.
T Consensus       529 LYerlL~rt~h  539 (677)
T KOG1915|consen  529 LYERLLDRTQH  539 (677)
T ss_pred             HHHHHHHhccc
Confidence            99999987653

>PLN03077 Protein ECB2; Provisional

Probab=95.56  E-value=0.1  Score=52.97  Aligned_cols=86  Identities=13%  Similarity=0.115  Sum_probs=47.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n--a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +.+++|..+|+++.+..+-.  ...+..+..++. +.|++++|++.+++. .+.|+ +.+|..+-..+ ..+++.+.|+.
T Consensus       603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac-~~~~~~e~~e~  678 (857)
T PLN03077        603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNAC-RIHRHVELGEL  678 (857)
T ss_pred             ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH-HHcCChHHHHH
Confidence            45666666666666432222  244555555554 466666666666653 34443 34444333333 33566677777


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      ..+++++++|++
T Consensus       679 ~a~~l~~l~p~~  690 (857)
T PLN03077        679 AAQHIFELDPNS  690 (857)
T ss_pred             HHHHHHhhCCCC
Confidence            777777777764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.56  E-value=0.035  Score=49.46  Aligned_cols=88  Identities=18%  Similarity=0.208  Sum_probs=69.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHcCChHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV-LSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a-l~~lG~ll~~~~gd~eeA~~  211 (224)
                      .++++.|.+.|...+++||.+-.++.|-|..++ .-|++.-|.+-+.+--..||+||-- ++.|   +.+..-+.++|..
T Consensus       112 a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY---l~E~k~dP~~A~t  187 (297)
T COG4785         112 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY---LNEQKLDPKQAKT  187 (297)
T ss_pred             cccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHH---HHHhhCCHHHHHH
Confidence            379999999999999999999999999998887 6899999999999999999999853 2222   3344456777766


Q ss_pred             HH-HHHHHhCCCCC
Q 027404          212 YF-DRAVHSAPDDW  224 (224)
Q Consensus       212 ~f-erAL~l~P~d~  224 (224)
                      .+ +|+..++-+.|
T Consensus       188 nL~qR~~~~d~e~W  201 (297)
T COG4785         188 NLKQRAEKSDKEQW  201 (297)
T ss_pred             HHHHHHHhccHhhh
Confidence            44 46666654443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.53  E-value=0.03  Score=32.83  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       190 ~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++++.+|.++.. .|++++|+.+|++.++..|+.
T Consensus         1 ~a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence            467889988876 579999999999999999973

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.46  E-value=0.05  Score=54.06  Aligned_cols=50  Identities=16%  Similarity=0.081  Sum_probs=30.1

Q ss_pred             CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027404          134 KESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK  185 (224)
Q Consensus       134 ~d~e~A~~~yerALe~--dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld  185 (224)
                      +++++|...|+++.+.  .| |..++..+..++. ..|++++|++.+..+++..
T Consensus       304 g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~-~~g~~~~a~~i~~~m~~~g  355 (697)
T PLN03081        304 GYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFS-RLALLEHAKQAHAGLIRTG  355 (697)
T ss_pred             CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH-hccchHHHHHHHHHHHHhC
Confidence            7788888888888764  33 3345555444444 3566666666665555543

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.38  E-value=0.19  Score=53.12  Aligned_cols=82  Identities=16%  Similarity=0.056  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCChHH
Q 027404          134 KESESMDVYYQEMIKA----YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK-PGDGNVLSMYGDLIWINHKDAPR  208 (224)
Q Consensus       134 ~d~e~A~~~yerALe~----dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld-P~da~al~~lG~ll~~~~gd~ee  208 (224)
                      +++++|.+.|+++.+.    .|+ ..++..+-.++. ..|++++|++.|++..+.+ +.+...|..+-..+.. .|++++
T Consensus       556 G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~-k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G~~de  632 (1060)
T PLN03218        556 GAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA-NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KGDWDF  632 (1060)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHHH
Confidence            5667777777776652    343 344444444444 4666666666666666654 2244444444444433 455666


Q ss_pred             HHHHHHHHHH
Q 027404          209 AKSYFDRAVH  218 (224)
Q Consensus       209 A~~~ferAL~  218 (224)
                      |+.+|++..+
T Consensus       633 Al~lf~eM~~  642 (1060)
T PLN03218        633 ALSIYDDMKK  642 (1060)
T ss_pred             HHHHHHHHHH
Confidence            6666665554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.26  E-value=0.11  Score=47.48  Aligned_cols=57  Identities=16%  Similarity=0.181  Sum_probs=52.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN  190 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~  190 (224)
                      .+++..|...|.+.++.||.++.+.+|-|.++. ..|+...|++..+.++.+.|.+..
T Consensus       265 ~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll-Ylg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  265 QNNFAEAHRFFTEILRMDPRNAVANNNKALCLL-YLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             ccchHHHHHHHhhccccCCCchhhhchHHHHHH-HHHHHHHHHHHHHHHhccCCccch
Confidence            378999999999999999999999999998876 799999999999999999998654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.22  E-value=0.16  Score=45.57  Aligned_cols=68  Identities=18%  Similarity=0.108  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da---~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +..|++-|.... ..|++++|+.+|+++....|..+   .++..++.+++. .+++++|+.+.++-+++.|++
T Consensus        34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~  104 (254)
T COG4105          34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTH  104 (254)
T ss_pred             HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCC
Confidence            466777776665 58999999999999999988764   466677766665 578999999999999999975

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.20  E-value=0.27  Score=52.00  Aligned_cols=83  Identities=13%  Similarity=0.024  Sum_probs=62.1

Q ss_pred             CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHcCChH
Q 027404          134 KESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL----AKPGDGNVLSMYGDLIWINHKDAP  207 (224)
Q Consensus       134 ~d~e~A~~~yerALe~--dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~----ldP~da~al~~lG~ll~~~~gd~e  207 (224)
                      +++++|...|+++.+.  .| |..+|..+-..+. ..|++++|.+.|++...    +.|+ ...|..+-..+.. .|+++
T Consensus       521 G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~-k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k-~G~ld  596 (1060)
T PLN03218        521 GQVAKAFGAYGIMRSKNVKP-DRVVFNALISACG-QSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN-AGQVD  596 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH-CCCHH
Confidence            7899999999999775  44 3567777777776 68999999999998876    3554 3455555555544 67899


Q ss_pred             HHHHHHHHHHHhC
Q 027404          208 RAKSYFDRAVHSA  220 (224)
Q Consensus       208 eA~~~ferAL~l~  220 (224)
                      +|.++|+++.+.+
T Consensus       597 eA~elf~~M~e~g  609 (1060)
T PLN03218        597 RAKEVYQMIHEYN  609 (1060)
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999888754

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.12  E-value=0.086  Score=50.75  Aligned_cols=84  Identities=13%  Similarity=0.054  Sum_probs=66.1

Q ss_pred             CCHHHHHHHHHHHHHHC--CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAY--PED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP------GDGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~d--P~n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP------~da~al~~lG~ll~~  201 (224)
                      ++++.|+++|.+++.+.  -.+    +...|.+|..|. ...++++|+.|+.|-+++..      ....+++.+|+.+-.
T Consensus       249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA  327 (639)
T ss_pred             cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            78999999999986442  222    456778888887 68899999999999887765      345678889988766


Q ss_pred             HcCChHHHHHHHHHHHHh
Q 027404          202 NHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l  219 (224)
                      + +..++|+.+.++++++
T Consensus       328 l-g~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  328 L-GEHRKALYFAELHLRS  344 (639)
T ss_pred             h-hhHHHHHHHHHHHHHH
Confidence            5 5689999999988875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.05  E-value=0.22  Score=43.52  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n--a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +++.+|...+++..+.+|..  |+....+|+.+. .+|.++.|+..|+.|+..-|+. .+...|+..+.. +|+..+|.+
T Consensus       138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la-a~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~-qgr~~ea~a  214 (251)
T COG4700         138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA-AQGKYADAESAFEVAISYYPGP-QARIYYAEMLAK-QGRLREANA  214 (251)
T ss_pred             ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH-hcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHH-hcchhHHHH
Confidence            68899999999999999874  678888899987 6999999999999999999865 555568877765 466666655


Q ss_pred             HHH
Q 027404          212 YFD  214 (224)
Q Consensus       212 ~fe  214 (224)
                      .+.
T Consensus       215 q~~  217 (251)
T COG4700         215 QYV  217 (251)
T ss_pred             HHH
Confidence            443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=0.17  Score=50.12  Aligned_cols=89  Identities=18%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCChH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY------GDLIWINHKDAP  207 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l------G~ll~~~~gd~e  207 (224)
                      ++...+....+.+|.+||.++.++.|++.++......+..++...+.|....|++..++..+      +.++.. .++.+
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~  159 (620)
T COG3914          81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGRTA  159 (620)
T ss_pred             ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hccHH
Confidence            56678888999999999999999999999886444455667777777999999999987776      555433 46789


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027404          208 RAKSYFDRAVHSAPDD  223 (224)
Q Consensus       208 eA~~~ferAL~l~P~d  223 (224)
                      +|..+.++++.+.|.+
T Consensus       160 ~~~~~l~~~~d~~p~~  175 (620)
T COG3914         160 EAELALERAVDLLPKY  175 (620)
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            9999999999998864

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.98  E-value=0.61  Score=39.10  Aligned_cols=67  Identities=12%  Similarity=0.072  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~  201 (224)
                      ++.+.++..++..--+.|+.+++-..-|+++. ..|++.+|+..|+.+.+..|..+.+-..++.+++.
T Consensus        24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             CChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            47889999999888899999999999999887 79999999999999999999999888888887754

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.96  E-value=0.14  Score=47.69  Aligned_cols=81  Identities=9%  Similarity=-0.115  Sum_probs=68.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      .+++.|+++..--.+.+|.+-..+..+|.+++ ...++..|..||++.-...|........++.-++.. +.+.+|+...
T Consensus        24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A-~i~ADALrV~  101 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA-CIYADALRVA  101 (459)
T ss_pred             hhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh-cccHHHHHHH
Confidence            57888999999999999999999999999988 688999999999999999999988877777777653 5678887765


Q ss_pred             HHH
Q 027404          214 DRA  216 (224)
Q Consensus       214 erA  216 (224)
                      ...
T Consensus       102 ~~~  104 (459)
T KOG4340|consen  102 FLL  104 (459)
T ss_pred             HHh
Confidence            443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.80  E-value=0.62  Score=42.51  Aligned_cols=84  Identities=14%  Similarity=0.184  Sum_probs=65.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--ChHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK--DAPRAKSY  212 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g--d~eeA~~~  212 (224)
                      -.+..+..|++||+.||++..++..|=.... ..-+.++..+-+++++..+|++...|..|-........  .+.+....
T Consensus        46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~  124 (321)
T PF08424_consen   46 LAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV  124 (321)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            4567888999999999999988888777665 46688899999999999999999999876554322111  36778888


Q ss_pred             HHHHHHh
Q 027404          213 FDRAVHS  219 (224)
Q Consensus       213 ferAL~l  219 (224)
                      |.++|+.
T Consensus       125 y~~~l~~  131 (321)
T PF08424_consen  125 YEKCLRA  131 (321)
T ss_pred             HHHHHHH
Confidence            8877763

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.76  E-value=0.093  Score=49.73  Aligned_cols=83  Identities=12%  Similarity=-0.020  Sum_probs=64.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      +..+++.|+..++-++..+-..- .+...+|.+++ ..|||++|+..|+-+...+.-++.++.+++.+.+.+ |.|.+|.
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL-g~Y~eA~  111 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL-GQYIEAK  111 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH-HHHHHHH
Confidence            44789999999999886554433 34444555566 589999999999999987777888999999887765 6799998


Q ss_pred             HHHHHH
Q 027404          211 SYFDRA  216 (224)
Q Consensus       211 ~~ferA  216 (224)
                      ...++|
T Consensus       112 ~~~~ka  117 (557)
T KOG3785|consen  112 SIAEKA  117 (557)
T ss_pred             HHHhhC
Confidence            877665

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.74  E-value=0.038  Score=51.41  Aligned_cols=62  Identities=8%  Similarity=0.012  Sum_probs=38.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      -+.+--..|.+++..+|.|+++|..-+.+-+...++++.|.+.|.++|+.+|..+..|..|-
T Consensus       122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf  183 (435)
T COG5191         122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF  183 (435)
T ss_pred             HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence            34444555666677777777666654444334566777777777777777777777665543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.56  E-value=0.099  Score=31.99  Aligned_cols=30  Identities=10%  Similarity=0.097  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404          189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      +.++.++|.++.. .|++++|+.++++++.+
T Consensus         2 a~~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            3578899988876 58999999999999975

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=0.32  Score=44.34  Aligned_cols=89  Identities=17%  Similarity=0.171  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChH-HHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP-RAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~e-eA~~~  212 (224)
                      ..-.+|..+-+.+|.+||.|-.+|..--.++.+.+.++.+-+.|+...++-+|.+.++|...- ++..+.+++. .-+++
T Consensus        57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr-~ive~l~d~s~rELef  135 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR-VIVELLGDPSFRELEF  135 (318)
T ss_pred             ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH-HHHHHhcCcccchHHH
Confidence            455789999999999999999888876667776677899999999999999999999998765 4456667777 77888


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      .+.++..+..+
T Consensus       136 ~~~~l~~DaKN  146 (318)
T KOG0530|consen  136 TKLMLDDDAKN  146 (318)
T ss_pred             HHHHHhccccc
Confidence            88888876654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.50  E-value=0.3  Score=48.51  Aligned_cols=88  Identities=13%  Similarity=0.077  Sum_probs=60.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHH---------------------------------HHHHHHHcCCHHHHHHH
Q 027404          131 DSGKESESMDVYYQEMIKAYPEDALVLANY---------------------------------AKFLKEIRGDFVKAEEY  177 (224)
Q Consensus       131 ~~~~d~e~A~~~yerALe~dP~na~~l~nl---------------------------------A~~l~e~~Gd~eeAe~~  177 (224)
                      +..++|++|.....+.|...|++..+++--                                 |.+.| +.+..++|+.+
T Consensus        23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y-rlnk~Dealk~  101 (652)
T KOG2376|consen   23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY-RLNKLDEALKT  101 (652)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH-HcccHHHHHHH
Confidence            445788999998888888888887665522                                 22233 35556666666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          178 CGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       178 ~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++   -+++.+..++...|.+++.+ ++|++|...|+..++-+-++
T Consensus       102 ~~---~~~~~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen  102 LK---GLDRLDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             Hh---cccccchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCch
Confidence            66   35666666777777777764 68999999999887765443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.33  E-value=0.16  Score=44.79  Aligned_cols=62  Identities=16%  Similarity=0.096  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      +.++.|+..+-+||+++|.+-.++..-|.+| +.+..+++|++-|++.++.+|...++.-...
T Consensus       148 ~k~e~aI~dcsKaiel~pty~kAl~RRAeay-ek~ek~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  148 RKWESAIEDCSKAIELNPTYEKALERRAEAY-EKMEKYEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             hhHHHHHHHHHhhHhcCchhHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            6789999999999999999998888888766 4789999999999999999999887765444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.32  E-value=0.29  Score=42.51  Aligned_cols=88  Identities=13%  Similarity=0.154  Sum_probs=63.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHH
Q 027404          132 SGKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR  208 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~ee  208 (224)
                      -++++++|+..++.++...-+.   +.+-..+|+++. .+|.+++|+..+.....-+ -.+.+....|.++.. .|+-++
T Consensus       101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~-kg~k~~  177 (207)
T COG2976         101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEES-WAAIVAELRGDILLA-KGDKQE  177 (207)
T ss_pred             hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH-cCchHH
Confidence            3478999999999998764443   256667899888 5899999988665433221 123344457888765 578999


Q ss_pred             HHHHHHHHHHhCCC
Q 027404          209 AKSYFDRAVHSAPD  222 (224)
Q Consensus       209 A~~~ferAL~l~P~  222 (224)
                      |...|++|+..++.
T Consensus       178 Ar~ay~kAl~~~~s  191 (207)
T COG2976         178 ARAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHHHHccCC
Confidence            99999999988653

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.29  E-value=0.45  Score=46.61  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~  197 (224)
                      +.+-...|.+||..+|++|++|..-|...++..-+.+.|.+.|.++|+.+|+.+..|..|-.
T Consensus       121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence            66777899999999999999999999888876666999999999999999999999876544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.26  E-value=0.44  Score=43.15  Aligned_cols=84  Identities=14%  Similarity=0.135  Sum_probs=57.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-HHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLA------NYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDG-NVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~------nlA~~l~e~~Gd~eeAe~~~erAL~l-----dP~da-~al~~lG~ll~~  201 (224)
                      +++++|..++++|++..-+|...++      ..+.++. ....+.+++.+|+||..+     .|+-+ .++-.-|.++ +
T Consensus        45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l-e  122 (308)
T KOG1585|consen   45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL-E  122 (308)
T ss_pred             ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-h
Confidence            7899999999999976555543332      3344443 577888999999999976     34332 2333344443 3


Q ss_pred             HcCChHHHHHHHHHHHHhC
Q 027404          202 NHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~  220 (224)
                       ..+.++|+.+|++++.+-
T Consensus       123 -nv~Pd~AlqlYqralavv  140 (308)
T KOG1585|consen  123 -NVKPDDALQLYQRALAVV  140 (308)
T ss_pred             -cCCHHHHHHHHHHHHHHH
Confidence             357999999999998763

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.23  E-value=0.23  Score=48.73  Aligned_cols=84  Identities=18%  Similarity=0.119  Sum_probs=58.2

Q ss_pred             CCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027404          133 GKESESMDVYYQEMIK-----AYPEDALVLANYAKFLKEI---RG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH  203 (224)
Q Consensus       133 ~~d~e~A~~~yerALe-----~dP~na~~l~nlA~~l~e~---~G-d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~  203 (224)
                      ..|++.|..+|+.|.+     ..-.++.+.+.+|.++.+.   .. |.+.|..+|.+|.+...  +++.+.+|.++..-.
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~  339 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGT  339 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCC
Confidence            3689999999999977     1222566788888877631   12 67889999998888754  444556776664433


Q ss_pred             --CChHHHHHHHHHHHH
Q 027404          204 --KDAPRAKSYFDRAVH  218 (224)
Q Consensus       204 --gd~eeA~~~ferAL~  218 (224)
                        +++..|..||..|.+
T Consensus       340 ~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  340 KERDYRRAFEYYSLAAK  356 (552)
T ss_pred             ccccHHHHHHHHHHHHH
Confidence              356788888888764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.22  E-value=0.14  Score=48.58  Aligned_cols=85  Identities=13%  Similarity=0.014  Sum_probs=66.2

Q ss_pred             CCHHHHHHHHHHHHHHCCC--CH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPE--DA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG----------DGNVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~--na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~----------da~al~~lG~  197 (224)
                      ..++++.++|++|+.+.-+  |+    .++..++.++- +..|+++|.-+..+|.++-.+          .+.+++.++.
T Consensus       136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV  214 (518)
T KOG1941|consen  136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV  214 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence            4789999999999987444  33    57778898876 689999999999999987443          2345667776


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhC
Q 027404          198 LIWINHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l~  220 (224)
                      .+. +.|+.-+|.++.+.|.++.
T Consensus       215 alR-~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  215 ALR-LLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHH-HhcccccHHHHHHHHHHHH
Confidence            654 4678999999999998763

>PRK10941 hypothetical protein; Provisional

Probab=94.17  E-value=0.24  Score=44.54  Aligned_cols=59  Identities=14%  Similarity=-0.054  Sum_probs=55.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS  193 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~  193 (224)
                      +++++|..+.++.+..+|+++.-+..-|.++. ..|.+..|..-|+.-|+..|+++.+-.
T Consensus       195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        195 KQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            89999999999999999999999999998877 699999999999999999999998864

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.13  E-value=0.46  Score=47.26  Aligned_cols=81  Identities=10%  Similarity=-0.009  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--------------------------  187 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~--------------------------  187 (224)
                      +..++|...+.   -.|+.+..++...|.++| +.++|++|...|+..++-+-+                          
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~  168 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP  168 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence            46677777777   567777888889999999 799999999999988653332                          


Q ss_pred             -----CHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404          188 -----DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       188 -----da~al~~lG~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                           ..+.++|.+.++.. .++|.+|++.++.|+++
T Consensus       169 ~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  169 EVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRI  204 (652)
T ss_pred             CCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH
Confidence                 23344555555544 47899999999999654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.11  E-value=0.65  Score=45.47  Aligned_cols=88  Identities=15%  Similarity=0.133  Sum_probs=62.5

Q ss_pred             CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC-----
Q 027404          134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILA-KPGDGNVLSMYGDLIWINHKD-----  205 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~--na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-dP~da~al~~lG~ll~~~~gd-----  205 (224)
                      |+.++|++.|+..++.+|.  +..++.|+-.++.+ .+.+.++...+.|==++ -|.-+...+.-+.+....-+|     
T Consensus       273 Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e  351 (539)
T PF04184_consen  273 GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE  351 (539)
T ss_pred             CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch
Confidence            8999999999999998887  45689999998874 89999999988874322 244555544433222111111     


Q ss_pred             ----------hHHHHHHHHHHHHhCCC
Q 027404          206 ----------APRAKSYFDRAVHSAPD  222 (224)
Q Consensus       206 ----------~eeA~~~ferAL~l~P~  222 (224)
                                -..|++.++||++.||.
T Consensus       352 ~a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  352 AASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             hhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence                      13577899999999995

The molecular function of this protein is uncertain.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=94.03  E-value=0.17  Score=29.10  Aligned_cols=29  Identities=21%  Similarity=0.512  Sum_probs=18.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKF  163 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~  163 (224)
                      +++.|...|++++...|.++.+|..|+.+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            45566666666666666666666666544

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=93.99  E-value=0.29  Score=49.24  Aligned_cols=90  Identities=22%  Similarity=0.259  Sum_probs=72.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-HHc-CChH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIW-INH-KDAP  207 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld--P~da~al~~lG~ll~-~~~-gd~e  207 (224)
                      +.|=++.....|.+.|.+----|....|||.+|. .+.-+++|-+.|+|-|.+-  |+-.++|..|-.... ..+ ...+
T Consensus       489 s~gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE  567 (835)
T KOG2047|consen  489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE  567 (835)
T ss_pred             HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence            3367888999999999999999999999999986 5788999999999999875  455667776544332 223 3589


Q ss_pred             HHHHHHHHHHHhCCC
Q 027404          208 RAKSYFDRAVHSAPD  222 (224)
Q Consensus       208 eA~~~ferAL~l~P~  222 (224)
                      .|..+|++||+..|-
T Consensus       568 raRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  568 RARDLFEQALDGCPP  582 (835)
T ss_pred             HHHHHHHHHHhcCCH
Confidence            999999999998773

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.98  E-value=0.29  Score=46.19  Aligned_cols=88  Identities=16%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA-KPGD---GNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-dP~d---a~al~~lG~ll~~~~gd~eeA  209 (224)
                      |++-+|...+++.|+-.|.|-.++..-=.++. ..|+.+.-...++|.|-. +|+-   ..+.-.|+-.+.+ .|-|++|
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dA  194 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDA  194 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhH
Confidence            57778888999999999999877766555555 579999999999999977 6665   3344456655555 5789999


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      ++.-++|+++||.|
T Consensus       195 Ek~A~ralqiN~~D  208 (491)
T KOG2610|consen  195 EKQADRALQINRFD  208 (491)
T ss_pred             HHHHHhhccCCCcc
Confidence            99999999999976

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.92  E-value=1.1  Score=38.97  Aligned_cols=84  Identities=21%  Similarity=0.179  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHHHHHHH----CCCC---HHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCCC------CHHHHH
Q 027404          134 KESESMDVYYQEMIKA----YPED---ALVLANYAKFLKEIRGDFV-------KAEEYCGRAILAKPG------DGNVLS  193 (224)
Q Consensus       134 ~d~e~A~~~yerALe~----dP~n---a~~l~nlA~~l~e~~Gd~e-------eAe~~~erAL~ldP~------da~al~  193 (224)
                      -.++.|++.|.-||-.    ...+   +.++..+|+++. .+++.+       +|..+|++|+.....      ...+++
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            4788999988888743    3233   467778899876 477744       677777777765432      245677


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404          194 MYGDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       194 ~lG~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      .+|.+... .|++++|..+|.+.+..
T Consensus       170 LigeL~rr-lg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRR-LGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHcC
Confidence            78876654 58999999999999864

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.86  E-value=0.28  Score=46.56  Aligned_cols=88  Identities=15%  Similarity=0.154  Sum_probs=62.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------hCCCCHHHH---------
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL------------AKPGDGNVL---------  192 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~------------ldP~da~al---------  192 (224)
                      +++++|...|.-+.+.+--+++++.|+|.+.. ..|.|.+|...-.+|-+            ..-+|..-|         
T Consensus        71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD  149 (557)
T KOG3785|consen   71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD  149 (557)
T ss_pred             ccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence            58899999999999988888999999998776 68999999886555421            011111111         


Q ss_pred             -----HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          193 -----SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       193 -----~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                           ..++.+.+.+ -.|++|+..|++.+.-+|++
T Consensus       150 ~~EdqLSLAsvhYmR-~HYQeAIdvYkrvL~dn~ey  184 (557)
T KOG3785|consen  150 TLEDQLSLASVHYMR-MHYQEAIDVYKRVLQDNPEY  184 (557)
T ss_pred             hHHHHHhHHHHHHHH-HHHHHHHHHHHHHHhcChhh
Confidence                 1223333333 35999999999999988874

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.72  E-value=0.54  Score=38.83  Aligned_cols=84  Identities=13%  Similarity=0.021  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-hCCCCHH-HHHHHHHHHHHHcCChHHHHHHHH
Q 027404          139 MDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAIL-AKPGDGN-VLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       139 A~~~yerALe~dP~na~~l~nlA~~l~e--~~Gd~eeAe~~~erAL~-ldP~da~-al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      ..+-+++.-...--.....++||+++..  ...|..+.+.+++..++ ..|.... .+++++..++.. ++|++|+.|.+
T Consensus        17 ~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRl-keY~~s~~yvd   95 (149)
T KOG3364|consen   17 GQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRL-KEYSKSLRYVD   95 (149)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHH-hhHHHHHHHHH
Confidence            3333333333332335777888887752  12355578888888885 5565433 334455445443 56888888888


Q ss_pred             HHHHhCCCC
Q 027404          215 RAVHSAPDD  223 (224)
Q Consensus       215 rAL~l~P~d  223 (224)
                      ..++..|++
T Consensus        96 ~ll~~e~~n  104 (149)
T KOG3364|consen   96 ALLETEPNN  104 (149)
T ss_pred             HHHhhCCCc
Confidence            888888875

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.63  E-value=0.8  Score=40.12  Aligned_cols=85  Identities=18%  Similarity=0.118  Sum_probs=60.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH----cC
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEI---RGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWIN----HK  204 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~---~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~----~g  204 (224)
                      ..+..+|..+|+  ...+..++.+.++||.++..-   ..|+.+|..+|++|....-.. ..+...++..+..-    .-
T Consensus        90 ~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~  167 (292)
T COG0790          90 SRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV  167 (292)
T ss_pred             cccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence            356899999999  556678899999999887631   238999999999999885444 23366676655331    01


Q ss_pred             --ChHHHHHHHHHHHHh
Q 027404          205 --DAPRAKSYFDRAVHS  219 (224)
Q Consensus       205 --d~eeA~~~ferAL~l  219 (224)
                        +...|..+|++|-..
T Consensus       168 ~~~~~~A~~~~~~aa~~  184 (292)
T COG0790         168 AYDDKKALYLYRKAAEL  184 (292)
T ss_pred             cHHHHhHHHHHHHHHHh
Confidence              334788888887654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.58  E-value=1.4  Score=35.84  Aligned_cols=84  Identities=14%  Similarity=0.079  Sum_probs=57.2

Q ss_pred             CCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHH-
Q 027404          134 KESESMDVYYQEMIKAYPE------------DALVLANYAKFLKEIRGDFVKAEEYCGRAI-------LAKPGDGNVLS-  193 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~------------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL-------~ldP~da~al~-  193 (224)
                      +.|++|...|++|++..-.            |+.++..|+.++. ..|+|++++...++||       +++.+....|. 
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa  101 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA  101 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence            5789999999999987332            3567778888887 6899987655555555       67877777664 


Q ss_pred             ---HHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404          194 ---MYGDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       194 ---~lG~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                         +.+..+ +-.|+.++|+..|+.|.++
T Consensus       102 aVfsra~Al-~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  102 AVFSRAVAL-EGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHH-HHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HhcCChHHHHHHHHHHHHH
Confidence               223333 3358999999999998753

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=93.50  E-value=0.077  Score=47.64  Aligned_cols=55  Identities=18%  Similarity=0.117  Sum_probs=49.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      ...+|..|+.+|.|||.++|..+..+.+-+.+++. ..+++.+.+-.++|++++|+
T Consensus        22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N   76 (284)
T KOG4642|consen   22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPN   76 (284)
T ss_pred             chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChH
Confidence            35678899999999999999999999999888877 46899999999999999997

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.17  E-value=0.66  Score=50.21  Aligned_cols=89  Identities=18%  Similarity=0.266  Sum_probs=76.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChH
Q 027404          130 GDSGKESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP  207 (224)
Q Consensus       130 ~~~~~d~e~A~~~yerALe~dP~--na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~e  207 (224)
                      +..+.+-++|...+.+||+.-|.  |.++....|.+-+ ..||.+++...|+-.+...|.--++|.-|...-. .+++.+
T Consensus      1574 Ll~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei-k~~~~~ 1651 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI-KHGDIK 1651 (1710)
T ss_pred             HhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH-ccCCHH
Confidence            33445668899999999999999  8899999998887 6999999999999999999999999998877543 357789


Q ss_pred             HHHHHHHHHHHhC
Q 027404          208 RAKSYFDRAVHSA  220 (224)
Q Consensus       208 eA~~~ferAL~l~  220 (224)
                      .+...|+|++.+.
T Consensus      1652 ~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1652 YVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999998763

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=93.12  E-value=1  Score=40.25  Aligned_cols=61  Identities=25%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY  195 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l  195 (224)
                      +.+.+|+...+.-++.+|.|+.....|-.+++ ..|++++|...++-+-.+.|++-.-...|
T Consensus        15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~ly   75 (273)
T COG4455          15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLY   75 (273)
T ss_pred             ccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHH
Confidence            57889999999999999999999999999888 79999999999999999999885543333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.06  E-value=0.27  Score=45.79  Aligned_cols=68  Identities=12%  Similarity=0.035  Sum_probs=45.2

Q ss_pred             HHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027404          147 IKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (224)
Q Consensus       147 Le~dP--~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferA  216 (224)
                      ++.-|  +++.+..|.|.+++ ..|++++|++-|+.|++..--.+-+.++++.+.+. .++++.|+.+....
T Consensus       135 veQlp~en~Ad~~in~gClly-kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEI  204 (459)
T KOG4340|consen  135 VEQLPSENEADGQINLGCLLY-KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEI  204 (459)
T ss_pred             HHhccCCCccchhccchheee-ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence            44445  56677777777776 47777777777777777776666666666666654 45677777655433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.98  E-value=1  Score=33.60  Aligned_cols=56  Identities=16%  Similarity=0.120  Sum_probs=30.5

Q ss_pred             CCHHHHHHHHHHHHHH----CCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 027404          134 KESESMDVYYQEMIKA----YPED-----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN  190 (224)
Q Consensus       134 ~d~e~A~~~yerALe~----dP~n-----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~  190 (224)
                      +++.+|.+.+.+.+..    +...     ..++.++|.+.. ..|++++|+..++.||++.....+
T Consensus        12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Are~~D   76 (94)
T PF12862_consen   12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLARENGD   76 (94)
T ss_pred             CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHCC
Confidence            4566665555554433    2211     345555666554 466666777777666666655433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.74  E-value=0.4  Score=30.25  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 027404          155 LVLANYAKFLKEIRGDFVKAEEY--CGRAILAKPGD  188 (224)
Q Consensus       155 ~~l~nlA~~l~e~~Gd~eeAe~~--~erAL~ldP~d  188 (224)
                      +.++.+|..++ .+|++++|+.+  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence            45666666665 47777777777  44666666653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.73  E-value=0.51  Score=38.95  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=52.6

Q ss_pred             CCCCCHHHHHHHHHHHHH-HCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 027404          131 DSGKESESMDVYYQEMIK-AYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSM  194 (224)
Q Consensus       131 ~~~~d~e~A~~~yerALe-~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~  194 (224)
                      ....+..+.+.+++..++ .+|..- +.++.+|..++ +.++|++|++|.+..++..|++.++...
T Consensus        46 ~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   46 RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            445688899999999997 566543 77778887777 7999999999999999999999998753

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.70  E-value=0.98  Score=44.33  Aligned_cols=82  Identities=15%  Similarity=0.095  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCChHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAPRA  209 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~--Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~eeA  209 (224)
                      +.+.|..+|.+|-+..  ++.+.+.+|.++..-.  .|+.+|.+||.+|.+.  .+..++..++.++..-   ..+...|
T Consensus       308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            8899999999998875  4566777776654322  3577999999999876  5778888888766431   2478999


Q ss_pred             HHHHHHHHHhC
Q 027404          210 KSYFDRAVHSA  220 (224)
Q Consensus       210 ~~~ferAL~l~  220 (224)
                      ..||++|.+..
T Consensus       384 ~~~~k~aA~~g  394 (552)
T KOG1550|consen  384 FAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHHHHcc
Confidence            99999998876

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.49  E-value=0.4  Score=27.46  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=26.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          169 GDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       169 Gd~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      |+.+.|...|++++...|.+..+|..|..+
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            567899999999999999999999887654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.39  E-value=0.84  Score=41.58  Aligned_cols=89  Identities=11%  Similarity=-0.045  Sum_probs=64.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE-IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e-~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      ..++-|+...+++.++|-+.......-|++-.. -...+..|.-+|+..-+.-|-.+..+...+.+... .+++++|+..
T Consensus       151 ~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeAe~l  229 (299)
T KOG3081|consen  151 HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEAESL  229 (299)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHHHHH
Confidence            577888999999988876654332222322211 12367789999998888566677777777777655 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      ++.|+..+++|
T Consensus       230 L~eaL~kd~~d  240 (299)
T KOG3081|consen  230 LEEALDKDAKD  240 (299)
T ss_pred             HHHHHhccCCC
Confidence            99999998876

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.38  E-value=1.4  Score=39.12  Aligned_cols=89  Identities=12%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------
Q 027404          134 KESESMDVYYQEMIKAYP----EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG----------------------  187 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP----~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~----------------------  187 (224)
                      |.++.|..++.++...++    ..+.+.+.+|.++. .+|+..+|+..++..+.....                      
T Consensus       160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (352)
T PF02259_consen  160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVI  238 (352)
T ss_pred             CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccc
Confidence            678889999999888652    25788888899988 589999999999888871111                      


Q ss_pred             ------------CHHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCC
Q 027404          188 ------------DGNVLSMYGDLIWIN-----HKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       188 ------------da~al~~lG~ll~~~-----~gd~eeA~~~ferAL~l~P~d  223 (224)
                                  -+.++..+|..+...     ...+++++.+|+.|++++|+.
T Consensus       239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  291 (352)
T PF02259_consen  239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW  291 (352)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence                        122444555544332     256888999999999998853

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.18  E-value=0.78  Score=41.29  Aligned_cols=83  Identities=14%  Similarity=0.058  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHHH----C-CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA----Y-PED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN------VLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~----d-P~n-a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~------al~~lG~ll~~  201 (224)
                      +++..|-..|.+|-+.    + -+| +..+...+.++  +..+.++|+.|+++||++--+-..      .+..+|.++-.
T Consensus        48 K~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy--kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs  125 (288)
T KOG1586|consen   48 KNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY--KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES  125 (288)
T ss_pred             HhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh--hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Confidence            4455555555555432    1 112 23444445544  367999999999999987443222      22345555433


Q ss_pred             HcCChHHHHHHHHHHHH
Q 027404          202 NHKDAPRAKSYFDRAVH  218 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~  218 (224)
                      -..++++|+.+|++|-.
T Consensus       126 dl~d~ekaI~~YE~Aae  142 (288)
T KOG1586|consen  126 DLQDFEKAIAHYEQAAE  142 (288)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            22578888888888754

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.13  E-value=1.6  Score=32.56  Aligned_cols=31  Identities=16%  Similarity=0.073  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 027404          189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       189 a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~  220 (224)
                      ..++.+++.+... .|++++|+..++.|+++.
T Consensus        41 ~~all~lA~~~~~-~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   41 AYALLNLAELHRR-FGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence            4566778877655 588999999999999874

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.00  E-value=0.4  Score=32.88  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       191 al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .++.+|..++. .++|++|..+.+++++++|++
T Consensus         3 ~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    3 CLYYLAIGHYK-LGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-
T ss_pred             hHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCc
Confidence            45566766665 579999999999999999986

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.83  E-value=1.2  Score=40.22  Aligned_cols=87  Identities=15%  Similarity=0.108  Sum_probs=55.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-H-----HHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-V-----LSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~-a-----l~~lG~ll~~  201 (224)
                      .+.++|..++++||++--+-.      ..+..+|.++.....++++|+.+|++|-+--..+-. .     +.-.+. |..
T Consensus        87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~-yaa  165 (288)
T KOG1586|consen   87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ-YAA  165 (288)
T ss_pred             cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH-HHH
Confidence            466777888888888755433      233367776654447899999999999875443322 1     111222 222


Q ss_pred             HcCChHHHHHHHHHHHHhCC
Q 027404          202 NHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~P  221 (224)
                      +.++|.+|+..|++..+..-
T Consensus       166 ~leqY~~Ai~iyeqva~~s~  185 (288)
T KOG1586|consen  166 QLEQYSKAIDIYEQVARSSL  185 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            33679999999998876543

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=91.76  E-value=0.67  Score=40.72  Aligned_cols=48  Identities=29%  Similarity=0.266  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIK-----AYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe-----~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|++     +.|.||   .+..|++.|+++..++.++|.+..++|+.
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4689999999986     488888   45668999999999999999998888875

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.32  E-value=2.3  Score=39.70  Aligned_cols=75  Identities=17%  Similarity=0.206  Sum_probs=55.7

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----CC------------CCHH---HHHHHHH
Q 027404          147 IKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL---------A-----KP------------GDGN---VLSMYGD  197 (224)
Q Consensus       147 Le~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~---------l-----dP------------~da~---al~~lG~  197 (224)
                      |+.+|-|.+++..++.++. .+||++.|..+++|||=         -     ++            .|..   +++.+..
T Consensus        33 l~~~PyHidtLlqls~v~~-~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYR-QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            4678889999999999987 69999999999999872         1     11            1222   2222322


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCC-C
Q 027404          198 LIWINHKDAPRAKSYFDRAVHSAPD-D  223 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l~P~-d  223 (224)
                      .+ .++|.+..|.++.+-.+.+||. |
T Consensus       112 ~L-~~RG~~rTAlE~~KlLlsLdp~~D  137 (360)
T PF04910_consen  112 SL-GRRGCWRTALEWCKLLLSLDPDED  137 (360)
T ss_pred             HH-HhcCcHHHHHHHHHHHHhcCCCCC
Confidence            33 3468999999999999999998 5

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.08  E-value=0.23  Score=46.36  Aligned_cols=81  Identities=6%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 027404          142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       142 ~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P  221 (224)
                      .|.++--..|+|+..|..|+.+.. ..+-+.+--..|-+++..+|.+++.|..-...-+...++++.|.+.|.+++++||
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            566777778999999999997665 6788999999999999999999999875333333446789999999999999999


Q ss_pred             CC
Q 027404          222 DD  223 (224)
Q Consensus       222 ~d  223 (224)
                      +.
T Consensus       174 ~~  175 (435)
T COG5191         174 RS  175 (435)
T ss_pred             CC
Confidence            75

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.07  E-value=1.3  Score=46.13  Aligned_cols=84  Identities=24%  Similarity=0.389  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHH----------HHHCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------
Q 027404          134 KESESMDVYYQEM----------IKAYPE----------DALVLANYAKFLKEIRGDFVKAEEYCGRAIL----------  183 (224)
Q Consensus       134 ~d~e~A~~~yerA----------Le~dP~----------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~----------  183 (224)
                      ++.+.|++||+++          |.-+|.          ++.+|...|.++ +..|+.+.|+.+|..|-+          
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A~D~fs~VrI~C~  950 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSAKDYFSMVRIKCI  950 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHhhhhhhheeeEee
Confidence            6789999999975          444554          445666677766 479999999999987743          


Q ss_pred             -----------hCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404          184 -----------AKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       184 -----------ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                                 -...|..+-+.+|+.| +..|++.+|+.+|.+|-..
T Consensus       951 qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  951 QGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             ccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHH
Confidence                       2335666677788765 4568899999999987653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.65  E-value=0.33  Score=27.93  Aligned_cols=24  Identities=25%  Similarity=0.131  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH
Q 027404          155 LVLANYAKFLKEIRGDFVKAEEYCG  179 (224)
Q Consensus       155 ~~l~nlA~~l~e~~Gd~eeAe~~~e  179 (224)
                      .+++++|.++. .+||+++|+..++
T Consensus         2 ~a~~~la~~~~-~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALL-AQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHh
Confidence            34566666665 4666666666654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.62  E-value=0.14  Score=47.94  Aligned_cols=79  Identities=19%  Similarity=0.136  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      ..+.+++.+++|-+..-.       -..++  ..|.+++|++.|.+||.++|..+..+...+.+++.+ ++...|+.-+.
T Consensus       103 ~~e~Tee~~eqa~e~k~~-------A~eAl--n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl-~kp~~airD~d  172 (377)
T KOG1308|consen  103 NAEITEEMMDQANDKKVQ-------ASEAL--NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKL-KKPNAAIRDCD  172 (377)
T ss_pred             hhhhhHHHHHHHHHHHHH-------HHHHh--cCcchhhhhcccccccccCCchhhhcccccceeeec-cCCchhhhhhh
Confidence            445667777777533322       22233  479999999999999999999999999999988775 46899999999


Q ss_pred             HHHHhCCCC
Q 027404          215 RAVHSAPDD  223 (224)
Q Consensus       215 rAL~l~P~d  223 (224)
                      .|+.++|+.
T Consensus       173 ~A~ein~Ds  181 (377)
T KOG1308|consen  173 FAIEINPDS  181 (377)
T ss_pred             hhhccCccc
Confidence            999999973

>smart00101 14_3_3 14-3-3 homologues

Probab=90.61  E-value=1  Score=40.02  Aligned_cols=48  Identities=21%  Similarity=0.223  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHH-----HCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIK-----AYPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe-----~dP~na~---~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|++     +.|.||.   +..|++.|+++..++.++|.+..++|+.
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd  199 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  199 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5689999999986     4588884   5678999999999999999987777774

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.52  E-value=1.2  Score=40.28  Aligned_cols=56  Identities=18%  Similarity=0.026  Sum_probs=49.8

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.++++.|..+.++.+.++|+++.-+..-|.+|.+ .+.+.-|++-++..++.-|++
T Consensus       193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCc
Confidence            57899999999999999999999888888887765 578899999999999999986

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.38  E-value=1  Score=42.91  Aligned_cols=84  Identities=20%  Similarity=0.241  Sum_probs=65.7

Q ss_pred             CCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPE----------DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG------DGNVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~----------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~------da~al~~lG~  197 (224)
                      .|+++|.-+..+|+++--.          ...+++.++.++. .+|++..|.+|++.|.++.-.      ++.-+.-+|.
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD  254 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            7899999999999886322          1367778888886 699999999999999887432      3444556788


Q ss_pred             HHHHHcCChHHHHHHHHHHHHh
Q 027404          198 LIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      +|.. .++.+.|-.-|++|+..
T Consensus       255 IyR~-~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  255 IYRS-RGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHh-cccHhHHHHHHHHHHHH
Confidence            7754 68999999999999864

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.38  E-value=3  Score=37.01  Aligned_cols=51  Identities=20%  Similarity=0.180  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHHHC----CCCH----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 027404          133 GKESESMDVYYQEMIKAY----PEDA----LVLANYAKFLKEIRG-DFVKAEEYCGRAILA  184 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~d----P~na----~~l~nlA~~l~e~~G-d~eeAe~~~erAL~l  184 (224)
                      +++++.|..+|.|+-...    |+..    .++++.|.-++ ..+ +++.|..++++|+++
T Consensus         6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH
Confidence            478899999999986654    3332    56777777776 477 999999999999887

It is also involved in sporulation [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=90.16  E-value=2.8  Score=41.71  Aligned_cols=90  Identities=18%  Similarity=0.215  Sum_probs=75.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       131 ~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      +...+.+.+...|...|..-|..-..|..||..-+ +.|..+++++.|+|++..-|-..+.|..|-.++....++.+.=.
T Consensus        56 ~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr  134 (577)
T KOG1258|consen   56 DSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLR  134 (577)
T ss_pred             CchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHH
Confidence            34456688999999999999999999999998877 68999999999999999999888888888777666667777777


Q ss_pred             HHHHHHHHhCC
Q 027404          211 SYFDRAVHSAP  221 (224)
Q Consensus       211 ~~ferAL~l~P  221 (224)
                      ..|++|+...-
T Consensus       135 ~~fe~A~~~vG  145 (577)
T KOG1258|consen  135 DLFERAKSYVG  145 (577)
T ss_pred             HHHHHHHHhcc
Confidence            78888877543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.98  E-value=1  Score=44.73  Aligned_cols=86  Identities=10%  Similarity=-0.068  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404          137 ESMDVYYQEMIKAYPEDALVLANY--AKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       137 e~A~~~yerALe~dP~na~~l~nl--A~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      ..|+.++..-+..+|.++.++..+  ...+. ..++...|...+..++.++|+++.+..+++..+...+..+.-++.+.+
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~  126 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLA-PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE  126 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhcc-ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            447777888888999999875543  55444 578888999999999999999999999999887665555666667777


Q ss_pred             HHHHhCCCC
Q 027404          215 RAVHSAPDD  223 (224)
Q Consensus       215 rAL~l~P~d  223 (224)
                      .|....|++
T Consensus       127 ~a~~~~~~~  135 (620)
T COG3914         127 IAEWLSPDN  135 (620)
T ss_pred             HHHhcCcch
Confidence            788888865

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.64  E-value=2.4  Score=36.82  Aligned_cols=65  Identities=17%  Similarity=0.194  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIKAYPE--D----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-NVLSMYGDLIWI  201 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~--n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da-~al~~lG~ll~~  201 (224)
                      +..|...|++|++....  .    ..+++.+|.+.+ +.|++++|.++|.++|...-... ..+..+|.=+|+
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~  212 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ  212 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence            45788888888876543  2    367777888776 79999999999999996533322 355556655443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.54  E-value=6.3  Score=32.89  Aligned_cols=67  Identities=7%  Similarity=-0.027  Sum_probs=57.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~  201 (224)
                      .+++.++..+...=-+-|+.+++...-|+++. ..|++.+|+..|+......+..+.+-..++.+++.
T Consensus        24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            57788888888888889999999999998887 79999999999999999998888777777777654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.52  E-value=2.6  Score=36.67  Aligned_cols=72  Identities=14%  Similarity=0.045  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCChHHHHH
Q 027404          137 ESMDVYYQEMIKA-YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG----DGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       137 e~A~~~yerALe~-dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~----da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +.|...|.++-.. .-++++..+.+|.++.  .-|.++|+++|.+|+++.+.    |++++..++.++.. .++++.|--
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AYi  199 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAYI  199 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhhh
Confidence            5666666655322 3357899999998764  68999999999999988554    48889899988765 567887753

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=89.32  E-value=2.1  Score=37.42  Aligned_cols=67  Identities=15%  Similarity=0.070  Sum_probs=48.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404          129 DGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKE----IRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLI  199 (224)
Q Consensus       129 ~~~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e----~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll  199 (224)
                      .++..++...|+++|..|..  .+.+.+..+++.++..    +.+  +.++|++|+.||.+++  +..+-++|...+
T Consensus        82 KgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~  154 (248)
T KOG4014|consen   82 KGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMY  154 (248)
T ss_pred             cCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHH
Confidence            34566789999999998877  5678888888866542    112  3679999999999774  666666665433

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.89  E-value=1.8  Score=39.57  Aligned_cols=73  Identities=15%  Similarity=0.259  Sum_probs=58.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      .+|.++..||+..|..                  ...-.+|.+.-+-+|.++|.+..+|...-.++.+++.+..+-..|+
T Consensus        40 e~fr~~m~YfRAI~~~------------------~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l  101 (318)
T KOG0530|consen   40 EDFRDVMDYFRAIIAK------------------NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL  101 (318)
T ss_pred             hhHHHHHHHHHHHHhc------------------cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5777777777655443                  3345578888888999999999999887777777777888999999


Q ss_pred             HHHHHhCCCCC
Q 027404          214 DRAVHSAPDDW  224 (224)
Q Consensus       214 erAL~l~P~d~  224 (224)
                      ...+.-+|.++
T Consensus       102 ~eI~e~npKNY  112 (318)
T KOG0530|consen  102 DEIIEDNPKNY  112 (318)
T ss_pred             HHHHHhCccch
Confidence            99999999875

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=88.78  E-value=1.9  Score=40.44  Aligned_cols=67  Identities=10%  Similarity=-0.032  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV----LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a----l~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +-+-.-|+.++ ...+|..|+.+|...|+..-.|+.+    |.|.+.+.+.+ ++|..|+.-..+|+.++|.+
T Consensus        82 en~KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h  152 (390)
T KOG0551|consen   82 ENYKEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTH  152 (390)
T ss_pred             HHHHHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcch
Confidence            34445588887 6899999999999999987766553    55666666554 67999999999999999976

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=88.43  E-value=0.54  Score=47.09  Aligned_cols=83  Identities=17%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHcCChHHHHHHHH
Q 027404          137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN--VLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       137 e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~--al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      +..-...-.+++.+|.+...+ ++|.+|+..+|+.-+|..|+.+|+-..|.+..  ++..+|.++.. .|...+|.-++.
T Consensus       196 ~~~~~~~~~glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-aG~sadA~iILh  273 (886)
T KOG4507|consen  196 DDIGHLIHEGLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHR-AGFSADAAVILH  273 (886)
T ss_pred             HHHHHHHHHhhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHH-cccccchhheee
Confidence            344456667777777765444 44445555788888888888888877776543  56667777654 466677776666


Q ss_pred             HHHHhCC
Q 027404          215 RAVHSAP  221 (224)
Q Consensus       215 rAL~l~P  221 (224)
                      .|+.-.|
T Consensus       274 AA~~dA~  280 (886)
T KOG4507|consen  274 AALDDAD  280 (886)
T ss_pred             hhccCCc
Confidence            6665444

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.36  E-value=3.7  Score=39.59  Aligned_cols=82  Identities=18%  Similarity=0.059  Sum_probs=57.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      |+++.|.+-|+.++. ||.-- .-+..|=.- .++.|+.+.|.+|.++|-...|.-+.++...-...+. .||.+.|+.+
T Consensus       134 G~~~~Ar~kfeAMl~-dPEtRllGLRgLyle-Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdWd~AlkL  210 (531)
T COG3898         134 GDYEDARKKFEAMLD-DPETRLLGLRGLYLE-AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDWDGALKL  210 (531)
T ss_pred             CchHHHHHHHHHHhc-ChHHHHHhHHHHHHH-HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCChHHHHHH
Confidence            789999999988864 33222 122222111 2368999999999999999999998876643333444 5899999999


Q ss_pred             HHHHHH
Q 027404          213 FDRAVH  218 (224)
Q Consensus       213 ferAL~  218 (224)
                      .+....
T Consensus       211 vd~~~~  216 (531)
T COG3898         211 VDAQRA  216 (531)
T ss_pred             HHHHHH
Confidence            886553

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=88.20  E-value=0.69  Score=44.83  Aligned_cols=64  Identities=13%  Similarity=0.005  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      +++..|+.-+.+||+.+|....+++.-|.+.. ..+++.+|..-|++...+.|+++.+...+..+
T Consensus        52 e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   52 ESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALGEFKKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             chhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            68889999999999999999998888887766 68999999999999999999999997766543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=87.26  E-value=3.3  Score=41.19  Aligned_cols=72  Identities=17%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404          144 QEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (224)
Q Consensus       144 erALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~  218 (224)
                      ++-|+.||.|.+.|+.+-.-+.  ..-++++...|++.+..-|..+.+|..|..-.+. .++|+.-+..|.|.|.
T Consensus        10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLV   81 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Confidence            7889999999999999877553  4589999999999999999999999887766544 4689999999988875

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.20  E-value=4.6  Score=38.66  Aligned_cols=89  Identities=9%  Similarity=0.122  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---hHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD---APRA  209 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd---~eeA  209 (224)
                      -+++-+.+.+.||+.||....+|+-..+++. ...  ++..-++.+++++++||.+-.+|.+--.++-.....   ..+=
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~-~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQ-KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence            4566778899999999999999999999886 344  467999999999999999888876443333222222   4566


Q ss_pred             HHHHHHHHHhCCCCC
Q 027404          210 KSYFDRAVHSAPDDW  224 (224)
Q Consensus       210 ~~~ferAL~l~P~d~  224 (224)
                      +++..++|.-++.||
T Consensus       169 l~ftt~~I~~nfSNY  183 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNY  183 (421)
T ss_pred             HHHHHHHHhccchhh
Confidence            778888888777653

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.98  E-value=2.6  Score=41.58  Aligned_cols=67  Identities=10%  Similarity=0.082  Sum_probs=55.8

Q ss_pred             CCHHHHHHHHHHHHH-----H----CC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404          134 KESESMDVYYQEMIK-----A----YP---------EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY  195 (224)
Q Consensus       134 ~d~e~A~~~yerALe-----~----dP---------~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l  195 (224)
                      +.|..+..+|++||+     +    .|         ..-+++||.|..+. ..|+...|.+||.+|+.+--.+|..|..+
T Consensus       297 ~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPrlWLRl  375 (696)
T KOG2471|consen  297 GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPRLWLRL  375 (696)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            578999999999996     1    11         12489999998876 69999999999999999988999999999


Q ss_pred             HHHHHH
Q 027404          196 GDLIWI  201 (224)
Q Consensus       196 G~ll~~  201 (224)
                      +.+...
T Consensus       376 AEcCim  381 (696)
T KOG2471|consen  376 AECCIM  381 (696)
T ss_pred             HHHHHH
Confidence            986543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=86.88  E-value=4.3  Score=36.96  Aligned_cols=80  Identities=13%  Similarity=0.002  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      .+..=....+++++.  ....++..++..+. ..++++.+++.+++.|..+|.+-.+|..+=.+++. .|+...|+..|+
T Consensus       136 ~f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~  211 (280)
T COG3629         136 RFDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYR  211 (280)
T ss_pred             hHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHH
Confidence            355555555555554  34567777887776 68999999999999999999998888766555554 688999999999


Q ss_pred             HHHH
Q 027404          215 RAVH  218 (224)
Q Consensus       215 rAL~  218 (224)
                      +.-+
T Consensus       212 ~l~~  215 (280)
T COG3629         212 QLKK  215 (280)
T ss_pred             HHHH
Confidence            8765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=86.52  E-value=3.9  Score=41.49  Aligned_cols=87  Identities=17%  Similarity=0.299  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP--GDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP--~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      -|+.--.+|++++-.=-.-|.+|..|..++. .+++...-...|.+||..-|  .|..+|-.|-.++ ..++-.+-++..
T Consensus        83 ~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv-~~~~lPets~rv  160 (835)
T KOG2047|consen   83 AYESVNNCFERCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFV-ESHGLPETSIRV  160 (835)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHH-HhCCChHHHHHH
Confidence            4666677888888876677889999999887 69999999999999998888  5777787765554 446667889999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |+|-|+++|..
T Consensus       161 yrRYLk~~P~~  171 (835)
T KOG2047|consen  161 YRRYLKVAPEA  171 (835)
T ss_pred             HHHHHhcCHHH
Confidence            99999998853

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=85.95  E-value=2.9  Score=26.29  Aligned_cols=33  Identities=6%  Similarity=-0.048  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHH--HHHHHHhCCCC
Q 027404          190 NVLSMYGDLIWINHKDAPRAKSY--FDRAVHSAPDD  223 (224)
Q Consensus       190 ~al~~lG~ll~~~~gd~eeA~~~--ferAL~l~P~d  223 (224)
                      +.+..+|..+.. .|++++|+.+  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence            345667766654 6899999999  65888888875

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=85.94  E-value=2.6  Score=41.16  Aligned_cols=50  Identities=20%  Similarity=0.310  Sum_probs=43.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404          163 FLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR  215 (224)
Q Consensus       163 ~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fer  215 (224)
                      +++ .+|+|.++.-|-.=..+++| .+.++..+|.+++.. ++|+||-.++..
T Consensus       471 yLy-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~-k~Y~eA~~~l~~  520 (549)
T PF07079_consen  471 YLY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMEN-KRYQEAWEYLQK  520 (549)
T ss_pred             HHH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH-hhHHHHHHHHHh
Confidence            355 58999999999999999999 889999999998774 689999999864

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=85.89  E-value=7.2  Score=38.86  Aligned_cols=89  Identities=12%  Similarity=0.097  Sum_probs=71.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCChHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~~gd~eeA~  210 (224)
                      ..|+++.....|++++---....++|..|+..+. ..|+..-|...+.+|.++.-.. +.....++ .+....|++..|.
T Consensus       309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a-~f~e~~~n~~~A~  386 (577)
T KOG1258|consen  309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEA-RFEESNGNFDDAK  386 (577)
T ss_pred             hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHH-HHHHhhccHHHHH
Confidence            3489999999999999999999999999999876 6899999999999998875444 44444444 4556678999999


Q ss_pred             HHHHHHHHhCCC
Q 027404          211 SYFDRAVHSAPD  222 (224)
Q Consensus       211 ~~ferAL~l~P~  222 (224)
                      ..+++...--|+
T Consensus       387 ~~lq~i~~e~pg  398 (577)
T KOG1258|consen  387 VILQRIESEYPG  398 (577)
T ss_pred             HHHHHHHhhCCc
Confidence            999988765554

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=85.65  E-value=4  Score=34.04  Aligned_cols=52  Identities=25%  Similarity=0.326  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG  187 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~  187 (224)
                      ...+..+++.++.++..| ++.++.+++.++. .+|+.++|.+..+++..+=|.
T Consensus       125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCc
Confidence            456677788888888888 6888888888876 689999999999999999883

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.91  E-value=1.2  Score=25.50  Aligned_cols=25  Identities=12%  Similarity=0.139  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404          190 NVLSMYGDLIWINHKDAPRAKSYFDR  215 (224)
Q Consensus       190 ~al~~lG~ll~~~~gd~eeA~~~fer  215 (224)
                      .++..+|.+++. .|++++|+..+++
T Consensus         2 ~a~~~la~~~~~-~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLA-QGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHhC
Confidence            466788988876 6899999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996

Probab=84.65  E-value=2.1  Score=28.26  Aligned_cols=33  Identities=30%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027404          141 VYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKA  174 (224)
Q Consensus       141 ~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeA  174 (224)
                      ..|.+||..+|++...+..||..+. .+|+..+|
T Consensus         3 ~all~AI~~~P~ddt~RLvYADWL~-e~gdp~ra   35 (42)
T TIGR02996         3 EALLRAILAHPDDDTPRLVYADWLD-EHGDPARA   35 (42)
T ss_pred             HHHHHHHHhCCCCcchHHHHHHHHH-HcCCHHHH
Confidence            3566777777777777777777665 46766554

This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=84.30  E-value=11  Score=31.49  Aligned_cols=83  Identities=18%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH---HHHHHHHHHcCC
Q 027404          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLS---MYGDLIWINHKD  205 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld--P~da~al~---~lG~ll~~~~gd  205 (224)
                      |+++.|.++|.++.+..-...   +.++++-.+.. ..+|+..+..++.+|-.+-  +.+.....   -+..++....++
T Consensus        50 Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~  128 (177)
T PF10602_consen   50 GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRD  128 (177)
T ss_pred             hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhch
Confidence            678888888888777644332   44555555554 4688888888888776542  22332221   111122233467


Q ss_pred             hHHHHHHHHHHH
Q 027404          206 APRAKSYFDRAV  217 (224)
Q Consensus       206 ~eeA~~~ferAL  217 (224)
                      |.+|...|-.++
T Consensus       129 f~~AA~~fl~~~  140 (177)
T PF10602_consen  129 FKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHccC
Confidence            888887775443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=84.28  E-value=8.4  Score=34.03  Aligned_cols=67  Identities=21%  Similarity=0.246  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP----GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (224)
Q Consensus       150 dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP----~da~al~~lG~ll~~~~gd~eeA~~~ferAL~  218 (224)
                      ....+..|..++.++. ..|.++.|..++.++...++    ..+.+...++.++|.. |+..+|+..++..+.
T Consensus       142 ~~~~~~~~l~~a~~aR-k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~-g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  142 PEELAETWLKFAKLAR-KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQ-GEQEEAIQKLRELLK  212 (352)
T ss_pred             hhHHHHHHHHHHHHHH-HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            5566788899999887 69999999999999998763    2567777789999984 678999999998887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.03  E-value=14  Score=34.01  Aligned_cols=71  Identities=21%  Similarity=0.137  Sum_probs=49.3

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404          143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKSYFDR  215 (224)
Q Consensus       143 yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~--da~al~~lG~ll~~~~gd~eeA~~~fer  215 (224)
                      +++.+..||+|.++.+.+|..+. ..|+.++|.+++-..++.|-+  +..+.-.+-.++. ..|.-+.+...|+|
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~-~~g~~Dp~~~~~RR  297 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE-AFGPADPLVLAYRR  297 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH-hcCCCCHHHHHHHH
Confidence            44557789999999999999887 699999999999999988664  4445444434433 33422334444443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=83.73  E-value=4  Score=36.25  Aligned_cols=52  Identities=23%  Similarity=0.179  Sum_probs=39.0

Q ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHH-------HHHHHHHHHHHHcC-ChHHHHHHHHHHHHh
Q 027404          167 IRGDFVKAEEYCGRAILAK-PGDGN-------VLSMYGDLIWINHK-DAPRAKSYFDRAVHS  219 (224)
Q Consensus       167 ~~Gd~eeAe~~~erAL~ld-P~da~-------al~~lG~ll~~~~g-d~eeA~~~ferAL~l  219 (224)
                      .+||++.|+.+|.|+=... .-++.       .+++.|.-++. .+ ++++|..|+++|.++
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH
Confidence            4799999999999998755 33333       34555555444 46 899999999999987

It is also involved in sporulation [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=83.30  E-value=9.8  Score=31.91  Aligned_cols=64  Identities=19%  Similarity=0.067  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      +.....+-. ..++.+.++..+...--+.|+.+.+-..-|.++.. .+++.+|+.+|+.+..-.|.
T Consensus        13 Lie~~~~al-~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~   76 (160)
T PF09613_consen   13 LIEVLSVAL-RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPG   76 (160)
T ss_pred             HHHHHHHHH-ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCC
Confidence            334444443 47899999999999999999999998877776654 68999999999998776664

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=83.26  E-value=4.8  Score=36.49  Aligned_cols=59  Identities=15%  Similarity=0.035  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS  193 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~  193 (224)
                      ++++.|..+-++.|..+|.++.-+..-|.+|. +.|.+..|++-+...++.-|+++.+..
T Consensus       195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             hchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            78999999999999999999999999898876 699999999999999999999988754

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=82.43  E-value=8.9  Score=40.02  Aligned_cols=57  Identities=16%  Similarity=0.133  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL  192 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al  192 (224)
                      +..++|..+++.--..-++|-..+-.+-.++. .++++++|..+|++|+..+|+ -..+
T Consensus        57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell  113 (932)
T KOG2053|consen   57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELL  113 (932)
T ss_pred             cCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHH
Confidence            45577776666666667777777777777776 589999999999999999998 4443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=82.26  E-value=7.3  Score=40.90  Aligned_cols=52  Identities=27%  Similarity=0.282  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHH---------------------HHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404          132 SGKESESMDVYYQEM---------------------IKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA  184 (224)
Q Consensus       132 ~~~d~e~A~~~yerA---------------------Le~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l  184 (224)
                      +.|+.+.|+.+|..|                     |+....|-.+.|.+|+.| +..|++.+|+.+|.||.+.
T Consensus       924 S~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  924 SVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             cccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHH
Confidence            447888888888876                     455677788899999876 5899999999999987643

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.02  E-value=11  Score=37.38  Aligned_cols=87  Identities=14%  Similarity=0.061  Sum_probs=66.4

Q ss_pred             CHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHHHHcC
Q 027404          135 ESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAK---PGDGN----VLSMYGDLIWINHK  204 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld---P~da~----al~~lG~ll~~~~g  204 (224)
                      +...++.+++..+...|.+-   -.+..+|.+++....+++-|..++++|+.+-   |+..+    ++..++.++.+...
T Consensus        24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~  103 (629)
T KOG2300|consen   24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ  103 (629)
T ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence            67889999998888877763   4566678888878899999999999999753   44422    45567777666555


Q ss_pred             ChHHHHHHHHHHHHhCC
Q 027404          205 DAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       205 d~eeA~~~ferAL~l~P  221 (224)
                      .+..|...+++|+++.-
T Consensus       104 s~~~~KalLrkaielsq  120 (629)
T KOG2300|consen  104 SFPPAKALLRKAIELSQ  120 (629)
T ss_pred             CCchHHHHHHHHHHHhc
Confidence            68899999999998754

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.80  E-value=21  Score=35.40  Aligned_cols=82  Identities=18%  Similarity=0.186  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH----HHHHHHHHHHHcCC
Q 027404          136 SESMDVYYQEMIKAYPED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNV----LSMYGDLIWINHKD  205 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~--da~a----l~~lG~ll~~~~gd  205 (224)
                      ...|+.+++-+++..+-.    +.+++.||.++.+.+.+++.|+.+++|++.+...  ..+.    ...++.++.. . +
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~-~  114 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-T-N  114 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-c-C
Confidence            456788888888532222    3677889999988899999999999999887643  3322    2234444433 3 3


Q ss_pred             hHHHHHHHHHHHHh
Q 027404          206 APRAKSYFDRAVHS  219 (224)
Q Consensus       206 ~eeA~~~ferAL~l  219 (224)
                      ...|..+++++++.
T Consensus       115 ~~~a~~~l~~~I~~  128 (608)
T PF10345_consen  115 PKAALKNLDKAIED  128 (608)
T ss_pred             HHHHHHHHHHHHHH
Confidence            45588888887764

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=81.52  E-value=3.1  Score=25.82  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=15.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAK  162 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~  162 (224)
                      +++.|...|++.+...|+ +..|..||.
T Consensus         2 E~dRAR~IyeR~v~~hp~-~k~WikyAk   28 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE-VKNWIKYAK   28 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence            455666666666666553 455555554

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>smart00101 14_3_3 14-3-3 homologues

Probab=80.91  E-value=16  Score=32.58  Aligned_cols=48  Identities=13%  Similarity=-0.048  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404          171 FVKAEEYCGRAIL-----AKPGDGNVL---SMYGDLIWINHKDAPRAKSYFDRAVH  218 (224)
Q Consensus       171 ~eeAe~~~erAL~-----ldP~da~al---~~lG~ll~~~~gd~eeA~~~ferAL~  218 (224)
                      .++|.+.|+.|++     +.|.||..+   .+++.+++...++.++|....++|+.
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd  199 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  199 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5589999999986     457887753   46788888888899999987777664

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=80.73  E-value=4  Score=35.76  Aligned_cols=84  Identities=15%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----C-
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE----IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH----K-  204 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e----~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~----g-  204 (224)
                      ++|++|...|..-..-+ .++...+.||.....    ..+++.+|+++|+.|..  -+++.+-.++|.++|.-.    . 
T Consensus        49 knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~d  125 (248)
T KOG4014|consen   49 KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKAD  125 (248)
T ss_pred             HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCC
Confidence            45555555554443332 357788888865432    13478899999999987  468888888998877422    2 


Q ss_pred             -ChHHHHHHHHHHHHhC
Q 027404          205 -DAPRAKSYFDRAVHSA  220 (224)
Q Consensus       205 -d~eeA~~~ferAL~l~  220 (224)
                       +.++|+.|+.+|-.++
T Consensus       126 pd~~Ka~~y~traCdl~  142 (248)
T KOG4014|consen  126 PDSEKAERYMTRACDLE  142 (248)
T ss_pred             CCcHHHHHHHHHhccCC
Confidence             3789999999987664

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.36  E-value=17  Score=31.77  Aligned_cols=56  Identities=23%  Similarity=0.133  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCChHHHHHHHHH
Q 027404          157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGDLIWINHKDAPRAKSYFDR  215 (224)
Q Consensus       157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~----al~~lG~ll~~~~gd~eeA~~~fer  215 (224)
                      ...+|..+.+ .+++++|+..++.++... .|..    +-..++.+++.. +.+++|+..++.
T Consensus        92 aL~lAk~~ve-~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~-~k~D~AL~~L~t  151 (207)
T COG2976          92 ALELAKAEVE-ANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQ-KKADAALKTLDT  151 (207)
T ss_pred             HHHHHHHHHh-hccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHh-hhHHHHHHHHhc
Confidence            3345666664 799999999999999653 3433    334678887764 679999988764

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=80.26  E-value=22  Score=34.52  Aligned_cols=89  Identities=15%  Similarity=0.060  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHH---HHHHHHHHHHHcCChH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA---KPGDGNV---LSMYGDLIWINHKDAP  207 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l---dP~da~a---l~~lG~ll~~~~gd~e  207 (224)
                      |+++.|..|-++|.+..|.-+.++...=...+ ..||++.|++..+...+.   .++.++-   -...+.......-|..
T Consensus       168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~-~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~  246 (531)
T COG3898         168 GAREAARHYAERAAEKAPQLPWAARATLEARC-AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA  246 (531)
T ss_pred             ccHHHHHHHHHHHHhhccCCchHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence            78899999999999999999987776544455 489999999999876643   3443331   1112222222335678


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027404          208 RAKSYFDRAVHSAPDD  223 (224)
Q Consensus       208 eA~~~ferAL~l~P~d  223 (224)
                      .|...-.+++++.|+.
T Consensus       247 ~Ar~~A~~a~KL~pdl  262 (531)
T COG3898         247 SARDDALEANKLAPDL  262 (531)
T ss_pred             HHHHHHHHHhhcCCcc
Confidence            8888888999998863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-04
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	8e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-04

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 51.3 bits (122), Expect = 5e-08
 Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
            +QEM        L+L   A      +G +  AE     A+    G    L     L   
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACHMA-QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246

Query: 202 NHKDAPRAKSYFDRAVHSAPDD 223
             K       Y  +   +    
Sbjct: 247 LGKPPEVTNRYLSQLKDAHRSH 268

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           +Y+E+++  P +   L   A+     RG    A     + +  +  +       G+  ++
Sbjct: 76  FYKELLQKAPNNVDCLEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134

Query: 202 NHKDAPRAKSYFDRAVHSAPDDW 224
             +   +      + + S     
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQ 157

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 9/93 (9%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190
             G+E +++   Y+++++   ++         +         K  E   + + +      
Sbjct: 100 CRGQEKDALR-MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158

Query: 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
                G L  +      +A++   + +   P  
Sbjct: 159 ARYRDG-LSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 10/82 (12%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           Y+  + K     + +    A   K+   ++ KA  +    +   P + + L    + + +
Sbjct: 42  YWTNVDKNSEISSKLATELALAYKK-NRNYDKAYLFYKELLQKAPNNVDCLEACAE-MQV 99

Query: 202 NHKDAPRAKSYFDRAVHSAPDD 223
                  A   +++ +    D+
Sbjct: 100 CRGQEKDALRMYEKILQLEADN 121

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 130 GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR---GDFVKAEEYCGRAILAKP 186
            +      ++D   ++ I+  P++  +    A  L ++R    +  + E+    A+   P
Sbjct: 186 DNWPPSQNAID-PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP 244

Query: 187 GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
           G  +VL       +    +  +A     +A+   P++
Sbjct: 245 GVTDVLRSAA-KFYRRKDEPDKAIELLKKALEYIPNN 280

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 4/84 (4%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDL 198
           + ++  +A      V +  A         + +AE Y  +    +        +   YG+ 
Sbjct: 322 HLKKADEANDNLFRVCSILASLHALA-DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF 380

Query: 199 IWINHKDAPRAKSYFDRAVHSAPD 222
                K   +A  +F   V     
Sbjct: 381 QLYQMKCEDKAIHHFIEGVKINQK 404

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 20/109 (18%)

Query: 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---- 188
            +E E      +E ++  P    VL + AKF +  + +  KA E   +A+   P +    
Sbjct: 227 EEEGEGEK-LVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLH 284

Query: 189 ---GNVLSMYGDLIWINHKDAPR-----------AKSYFDRAVHSAPDD 223
              G         +    ++              A ++  +A  +  + 
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 9/84 (10%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
             Q+ I+A P+++   A   ++    + D+  +     +A+  +  +  + +    +++ 
Sbjct: 32  ALQDKIRANPQNSEQWALLGEYYLW-QNDYSNSLLAYRQALQLRGENAELYAALATVLYY 90

Query: 202 --NHKDAPRAKSYFDRAVHSAPDD 223
             +     + ++  D+A+    ++
Sbjct: 91  QASQHMTAQTRAMIDKALALDSNE 114

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
             +  ++  P+D +     A       GD    E    R +   PG    ++  G  +  
Sbjct: 11  QLRAAVRHRPQDFVAWLMLADAELG-MGDTTAGEMAVQRGLALHPGHPEAVARLGR-VRW 68

Query: 202 NHKDAPRAKSYFDRAVHSAPDDW 224
             +    A     +A  +AP+  
Sbjct: 69  TQQRHAEAAVLLQQASDAAPEHP 91

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196
             Q+   A PE   +       L++  G    A     RA    P +  + +   
Sbjct: 79  LLQQASDAAPEHPGIALWLGHALED-AGQAEAAAAAYTRAHQLLPEEPYITAQLL 132

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 1/92 (1%)

Query: 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV 191
             K  +   +Y + +     +  LV   Y KF +              +A        +V
Sbjct: 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHV 170

Query: 192 LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
                 + +   KD   A   F+  +    D 
Sbjct: 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 9/82 (10%), Positives = 21/82 (25%), Gaps = 1/82 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
            +++  +       V    A        D   A +     +         +  Y D    
Sbjct: 156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY-LS 214

Query: 202 NHKDAPRAKSYFDRAVHSAPDD 223
           +  +    +  F+R + S    
Sbjct: 215 HLNEDNNTRVLFERVLTSGSLP 236

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 6e-06
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190
             GK  E++  +Y+E I+  P  A   +N    LKE+  D   A +   RAI   P   +
Sbjct: 55  QQGKLQEALM-HYKEAIRISPTFADAYSNMGNTLKEM-QDVQGALQCYTRAIQINPAFAD 112

Query: 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222
             S     I  +  + P A + +  A+   PD
Sbjct: 113 AHSNLAS-IHKDSGNIPEAIASYRTALKLKPD 143

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190
           + G   E++   Y++ ++ +PE A   +N A  L++ +G   +A  +   AI   P   +
Sbjct: 21  EQGNIEEAVR-LYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFAD 78

Query: 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW 224
             S  G       +D   A   + RA+   P   
Sbjct: 79  AYSNMG-NTLKEMQDVQGALQCYTRAIQINPAFA 111

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL 192
           G  ++  +    E +    E+  V+ + A+       DF    +     +   P   + L
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYY-NCDFKMCYKLTSVVMEKDPFHASCL 59

Query: 193 SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
            ++   +   +K          + V   P +
Sbjct: 60  PVHIGTLVELNKAN-ELFYLSHKLVDLYPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.4 bits (90), Expect = 9e-04
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           Y+++ +   P++A   +          G+F  A +Y   A+  +  D   ++M G  I +
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSL-MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316

Query: 202 NHKDAPRAKSY 212
              D+      
Sbjct: 317 YIGDSEAYIGA 327

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 7/81 (8%), Positives = 20/81 (24%), Gaps = 2/81 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
            +Q +      D+          + + G +  A        +    +        +   +
Sbjct: 43  VFQALCVLDHYDSRFFLGLGACRQAM-GQYDLAIHSYSYGAVMDIXEPRFPFHAAE-CLL 100

Query: 202 NHKDAPRAKSYFDRAVHSAPD 222
              +   A+S    A     +
Sbjct: 101 QXGELAEAESGLFLAQELIAN 121

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
            ++ +K+ P++ L     A+  + +     KA+E   +A+  KP    + + YG  +   
Sbjct: 31  IEDALKSDPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89

Query: 203 HKDAPRAKSYFDRAV 217
                 + +YFD+A+
Sbjct: 90  LNRPAESMAYFDKAL 104

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 17/90 (18%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGD-------GNVL 192
            +++ +   P+ A +  NY  FL        ++  Y  +A+     P         G   
Sbjct: 64  SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123

Query: 193 SMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222
           +  G            A++Y  R++ + P 
Sbjct: 124 AKQGQF--------GLAEAYLKRSLAAQPQ 145

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 133 GKESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190
            + +ESM  Y+ + +    YP   +   N      +  G F  AE Y  R++ A+P    
Sbjct: 91  NRPAESMA-YFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQPQFPP 148

Query: 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
                     +       A  YF +        
Sbjct: 149 AFKELARTK-MLAGQLGDADYYFKKYQSRVEVL 180

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 3/93 (3%)

Query: 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190
              +   S   +    IK  P  A   +N     KE RG   +A E+   A+  KP   +
Sbjct: 45  QCRRLDRSAH-FSTLAIKQNPLLAEAYSNLGNVYKE-RGQLQEAIEHYRHALRLKPDFID 102

Query: 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
                     +   D   A   +  A+   PD 
Sbjct: 103 GYINLA-AALVAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           +  ++ +  P++  VL   +    +      ++  +   AI   P      S  G  ++ 
Sbjct: 21  HCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQNPLLAEAYSNLG-NVYK 78

Query: 202 NHKDAPRAKSYFDRAVHSAPDD 223
                  A  ++  A+   PD 
Sbjct: 79  ERGQLQEAIEHYRHALRLKPDF 100

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           +++ +      +   +   A   +     F +A +    A      D   +   G    +
Sbjct: 58  FFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAVAFALGKNDYTPVFHTGQ-CQL 115

Query: 202 NHKDAPRAKSYFDRAVHSAPDD 223
             K   +AK  F+  +  + D+
Sbjct: 116 RLKAPLKAKECFELVIQHSNDE 137

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 2/80 (2%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
            + M+    ++ L+     K   E    F  A  +   A+   P         G      
Sbjct: 8   LEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGK-TLQG 65

Query: 203 HKDAPRAKSYFDRAVHSAPD 222
             D   A+  ++  + +A  
Sbjct: 66  QGDRAGARQAWESGLAAAQS 85

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 131 DSGKESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188
           +  +  E+      E  +   YPE + V  N      ++     +A+EY  +++      
Sbjct: 117 EQKRYEEAYQ-RLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNRNQ 174

Query: 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
            +V     DL++   ++   A+ Y+D        +
Sbjct: 175 PSVALEMADLLY-KEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
            ++ ++  P  A   A  A   +    +   A+E   +A+ +   +  VL+ YG      
Sbjct: 60  LRKALEIDPSSADAHAALAVVFQTE-MEPKLADEEYRKALASDSRNARVLNNYG-GFLYE 117

Query: 203 HKDAPRAKSYFDRAV 217
            K    A      A 
Sbjct: 118 QKRYEEAYQRLLEAS 132

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 18/90 (20%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGD-------GNVL 192
            Y++ + +   +A VL NY  FL E +  + +A +    A      P         G V 
Sbjct: 93  EYRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151

Query: 193 SMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222
                          +AK YF++++    +
Sbjct: 152 LQMKKP--------AQAKEYFEKSLRLNRN 173

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 133 GKESESMDVYYQEMIK---AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG 189
           G E++++  YY++ I       + A          + + G++ KAE      +   P   
Sbjct: 4   GLEAQAVP-YYEKAIASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQFPNHQ 61

Query: 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
            +   Y  ++  N     +      + +    DD
Sbjct: 62  ALRVFYA-MVLYNLGRYEQGVELLLKIIAETSDD 94

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
           Y   I    + + +L   A  L   R  F+       + +   P + +V  ++   +   
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFV-RSRFIDVLAITTKILEIDPYNLDVYPLHLASLH-E 351

Query: 203 HKDAPRAKSYFDRAVHSAPDD 223
             +  +     +  V   P+ 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEK 372

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---- 188
            K  +     + E  + +PE   V   +A+ L +   DF KA +    AI  +       
Sbjct: 352 NKFDDCET-LFSEAKRKFPEAPEVPNFFAEILTDK-NDFDKALKQYDLAIELENKLDGIY 409

Query: 189 ---GNVLSMYGDLI-WINHKDAPRAKSYFDRAVHSAPDD 223
                ++     L      ++   A +  ++A    P  
Sbjct: 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 2/82 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
            +Q +      DA          + + G + +A +      L    +            +
Sbjct: 40  IFQALCMLDHYDARYFLGLGACRQSL-GLYEQALQSYSYGALMDINEPRFPFHAA-ECHL 97

Query: 202 NHKDAPRAKSYFDRAVHSAPDD 223
              D   A+S F  A   A   
Sbjct: 98  QLGDLDGAESGFYSARALAAAQ 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.67
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.62
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.62
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.61
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.61
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.59
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.56
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.55
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.54
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.54
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.54
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.53
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.53
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.51
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.5
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.49
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.48
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.47
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.47
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.46
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.46
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.44
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.44
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.43
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.42
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.42
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.4
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.4
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.4
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.38
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.38
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.38
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.37
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.37
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.35
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.35
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.35
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.31
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.31
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.29
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.29
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.28
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.28
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.28
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.28
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.27
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.27
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.27
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.26
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.25
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.23
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.23
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.23
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.22
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.22
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.22
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.21
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.21
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.2
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.2
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.2
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.2
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.2
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.2
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.2
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.18
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.18
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.17
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.17
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.16
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.16
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.16
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.15
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.14
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.13
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.12
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.12
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.1
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.09
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.07
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.07
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.02
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.0
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.99
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.98
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.97
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.97
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.94
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.92
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.92
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.92
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.91
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.91
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.9
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.88
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.88
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.87
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.86
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.86
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.86
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.85
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.85
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.84
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.84
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.84
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.82
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.82
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.81
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.81
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.8
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.8
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.79
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.78
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.78
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.78
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.77
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.77
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.76
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.76
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.76
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.74
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.73
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.72
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.71
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.71
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.71
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.7
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.68
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.67
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.66
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.64
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.63
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.61
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.61
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.58
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.56
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.52
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.51
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.51
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.5
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.49
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.49
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.48
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.48
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.47
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.4
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.39
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.36
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.32
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.3
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.22
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.12
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.09
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.09
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.08
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.91
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.9
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.76
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.73
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.65
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.59
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.56
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.52
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.41
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.4
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.35
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.25
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.23
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.18
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.09
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.05
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.94
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.79
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.76
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.74
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.73
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.57
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.14
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.95
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.83
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.92
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.44
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.22
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.91
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.68
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	93.2
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.87
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.28
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.74
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	89.38
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	88.99
2npm_A	260	14-3-3 domain containing protein; cell regulator p	88.83
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	88.43
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	88.25
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	87.73
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.43
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	87.37
2o8p_A	227	14-3-3 domain containing protein; signaling protei	85.53
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	85.39
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	84.6
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.31

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.71  E-value=1.7e-16  Score=121.81  Aligned_cols=89  Identities=18%  Similarity=0.218  Sum_probs=84.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|++||+++|.++.+++++|.++. .+|++++|+.+|++||+++|+++.+|.++|.++.. .+++++|+.+
T Consensus        26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~  103 (126)
T 4gco_A           26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREWSKAQRA  103 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCHHHHHHH
Confidence            379999999999999999999999999999987 69999999999999999999999999999998876 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++|++++|++
T Consensus       104 ~~~al~l~P~~  114 (126)
T 4gco_A          104 YEDALQVDPSN  114 (126)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHHHCcCC
Confidence            99999999986

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.67  E-value=7.2e-16  Score=123.51  Aligned_cols=88  Identities=16%  Similarity=0.176  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++|++++|+++.+|+++|.++. .+|++++|+.+|++|++++|+++.+|+++|.++.. .|++++|+.+|
T Consensus        50 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg~~~eA~~~~  127 (151)
T 3gyz_A           50 GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LKAPLKAKECF  127 (151)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            79999999999999999999999999999987 69999999999999999999999999999998876 58999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|+.
T Consensus       128 ~~al~l~~~~  137 (151)
T 3gyz_A          128 ELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHCCCH
T ss_pred             HHHHHhCCCH
Confidence            9999999973

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.62  E-value=4.7e-15  Score=116.35  Aligned_cols=88  Identities=17%  Similarity=0.204  Sum_probs=80.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH-H
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS-Y  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~-~  212 (224)
                      +++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++|++++|+++.++.++|.++... +++++|.. +
T Consensus        45 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~aa~~~  122 (150)
T 4ga2_A           45 KEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN-DVTDGRAKYW  122 (150)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CSSSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHH
Confidence            78999999999999999999999999999987 699999999999999999999999999999988765 56766555 5


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      +++|++++|++
T Consensus       123 ~~~al~l~P~~  133 (150)
T 4ga2_A          123 VERAAKLFPGS  133 (150)
T ss_dssp             HHHHHHHSTTC
T ss_pred             HHHHHHhCcCC
Confidence            69999999986

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.62  E-value=2.7e-15  Score=114.18  Aligned_cols=88  Identities=13%  Similarity=-0.025  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++||+.+|+++.+|+++|.++. ..|++++|+.+|++|++++|+++.++..+|.++.. .|++++|+.+|
T Consensus        31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A~~~~  108 (121)
T 1hxi_A           31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALASL  108 (121)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            79999999999999999999999999999987 69999999999999999999999999999998876 47899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       109 ~~al~~~P~~  118 (121)
T 1hxi_A          109 RAWLLSQPQY  118 (121)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHhCcCC
Confidence            9999999975

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.61  E-value=8.4e-15  Score=114.64  Aligned_cols=88  Identities=20%  Similarity=0.231  Sum_probs=84.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++||+++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.+|.++|.++.. .+++++|+.+|
T Consensus        25 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  102 (164)
T 3sz7_A           25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MADYKGAKEAY  102 (164)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHH
Confidence            78999999999999999999999999999987 69999999999999999999999999999998876 57999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       103 ~~al~~~p~~  112 (164)
T 3sz7_A          103 EKGIEAEGNG  112 (164)
T ss_dssp             HHHHHHHSSS
T ss_pred             HHHHHhCCCc
Confidence            9999999986

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.61  E-value=7.1e-15  Score=115.50  Aligned_cols=88  Identities=9%  Similarity=-0.009  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.+|+++|.++. ..|++++|+.+|++|+.++|+++.+++++|.++.. .|++++|+.+|
T Consensus        35 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  112 (148)
T 2vgx_A           35 GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XGELAEAESGL  112 (148)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHHHH
Confidence            78999999999999999999999999999987 69999999999999999999999999999998876 58999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       113 ~~al~~~p~~  122 (148)
T 2vgx_A          113 FLAQELIANX  122 (148)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHCcCC
Confidence            9999999874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=6.2e-15  Score=113.52  Aligned_cols=88  Identities=14%  Similarity=-0.001  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.+|+++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .|++++|+.+|
T Consensus        32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  109 (142)
T 2xcb_A           32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LGDLDGAESGF  109 (142)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            79999999999999999999999999999987 69999999999999999999999999999998876 58999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       110 ~~al~~~p~~  119 (142)
T 2xcb_A          110 YSARALAAAQ  119 (142)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHhCCCC
Confidence            9999999865

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1e-14  Score=108.94  Aligned_cols=86  Identities=26%  Similarity=0.161  Sum_probs=81.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|++||+.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++..+|.++.. .+++++|+.+
T Consensus        17 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~   94 (126)
T 3upv_A           17 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYASALET   94 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHHHHHHH
Confidence            378999999999999999999999999999987 69999999999999999999999999999998876 5799999999


Q ss_pred             HHHHHHhC
Q 027404          213 FDRAVHSA  220 (224)
Q Consensus       213 ferAL~l~  220 (224)
                      |+++++++
T Consensus        95 ~~~al~~~  102 (126)
T 3upv_A           95 LDAARTKD  102 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999999

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.60  E-value=2.7e-15  Score=123.27  Aligned_cols=89  Identities=20%  Similarity=0.199  Sum_probs=81.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD----------FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH  203 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd----------~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~  203 (224)
                      +.+++|+..|++|++++|+++++|+++|.++. ..++          +++|+.+|++||+++|+++.+|+++|.++..+.
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~-~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLL-ELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999887 4665          469999999999999999999999999997653


Q ss_pred             ----------CChHHHHHHHHHHHHhCCCC
Q 027404          204 ----------KDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       204 ----------gd~eeA~~~ferAL~l~P~d  223 (224)
                                +++++|+.+|++|++++|++
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence                      58999999999999999986

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.59  E-value=1.3e-14  Score=111.10  Aligned_cols=88  Identities=20%  Similarity=0.303  Sum_probs=79.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHcCC
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-------NVLSMYGDLIWINHKD  205 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da-------~al~~lG~ll~~~~gd  205 (224)
                      .+++++|+.+|++||+++|+++.++.++|.++. .+|++++|+++|++||+++|++.       .++.++|.++.. .++
T Consensus        21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~~~   98 (127)
T 4gcn_A           21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK-QND   98 (127)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH-cCC
Confidence            379999999999999999999999999999987 69999999999999999998763       577888887765 579


Q ss_pred             hHHHHHHHHHHHHhCCC
Q 027404          206 APRAKSYFDRAVHSAPD  222 (224)
Q Consensus       206 ~eeA~~~ferAL~l~P~  222 (224)
                      +++|+.+|++|+.+.|+
T Consensus        99 ~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           99 LSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhhCcC
Confidence            99999999999999886

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.56  E-value=4.3e-15  Score=110.83  Aligned_cols=89  Identities=13%  Similarity=0.174  Sum_probs=80.2

Q ss_pred             CCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          133 GKESESMDVYYQEMIKA---YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~---dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      .+++++|+.+|++||++   +|+++.+++++|.++. .+|++++|+.+|++|++++|+++.++.++|.++.. .|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence            46889999999999999   6999999999999987 69999999999999999999999999999998876 5789999


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      +.+|++++++.|++
T Consensus        81 ~~~~~~al~~~p~~   94 (117)
T 3k9i_A           81 VELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhCCCc
Confidence            99999999999975

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.55  E-value=3.6e-14  Score=116.31  Aligned_cols=89  Identities=11%  Similarity=0.161  Sum_probs=84.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLAN----------------YAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~n----------------lA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      .+++++|+.+|+++++.+|+++.+++.                +|.++. ..|++++|+.+|++|++++|+++.++..+|
T Consensus        17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   95 (208)
T 3urz_A           17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDCLEACA   95 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            378999999999999999999999999                999987 699999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          197 DLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       197 ~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .++.. .|++++|+.+|+++++++|++
T Consensus        96 ~~~~~-~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           96 EMQVC-RGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHH-HTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHH-cCCHHHHHHHHHHHHHcCCCC
Confidence            98876 578999999999999999986

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.54  E-value=2.2e-14  Score=117.87  Aligned_cols=88  Identities=14%  Similarity=0.065  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHHHHHCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHH--
Q 027404          134 KESESMDVYYQEMIKAYPE-------DAL-----VLANYAKFLKEIRGDFVKAEEYCGRAILA-------KPGDGNVL--  192 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~-------na~-----~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-------dP~da~al--  192 (224)
                      +++++|+.+|++||+++|+       +..     +|.|.|.++. ..|++++|+.+|++||++       +|+++.+|  
T Consensus        25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~  103 (159)
T 2hr2_A           25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS  103 (159)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence            6899999999999999999       444     9999999987 699999999999999999       99999999  


Q ss_pred             --HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          193 --SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       193 --~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                        ++.|.++.. .+++++|+..|++|++++|+|
T Consensus       104 ~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A          104 AVYSRALALDG-LGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCc
Confidence              999998866 579999999999999999976

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.54  E-value=6.7e-15  Score=115.48  Aligned_cols=89  Identities=16%  Similarity=0.159  Sum_probs=84.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      ++++++|+..|++|+..+|.++.+++++|.+++ ..|++++|+++|++||+++|+++.+|.++|.++.. .+++++|+.+
T Consensus        10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~   87 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTDKAVEC   87 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchHHHHHH
Confidence            468999999999999999999999999999988 69999999999999999999999999999998866 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++|++++|++
T Consensus        88 ~~~al~~~p~~   98 (150)
T 4ga2_A           88 YRRSVELNPTQ   98 (150)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHHhCCCC
Confidence            99999999986

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.54  E-value=3.7e-14  Score=110.71  Aligned_cols=89  Identities=13%  Similarity=0.104  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 027404          133 GKESESMDVYYQEMIKA------------------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSM  194 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~------------------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~  194 (224)
                      .+++++|+.+|++||++                  +|.++.+++++|.++. ..|++++|+.+|++||.++|+++.+|+.
T Consensus        24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~  102 (162)
T 3rkv_A           24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETNEKALFR  102 (162)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcchHHHHH
Confidence            37899999999999999                  7888899999999987 6999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          195 YGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       195 lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +|.++.. .|++++|+.+|++|++++|++
T Consensus       103 ~g~~~~~-~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A          103 RAKARIA-AWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHH-HhcHHHHHHHHHHHHhcCCCC
Confidence            9998876 579999999999999999975

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.53  E-value=7.7e-14  Score=104.26  Aligned_cols=87  Identities=17%  Similarity=0.085  Sum_probs=82.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++++.++|+++.++..+|.++.. .+++++|+.+|
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~  100 (137)
T 3q49_B           23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANL  100 (137)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            78999999999999999999999999999987 69999999999999999999999999999998876 57999999999


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      +++++++|+
T Consensus       101 ~~a~~~~p~  109 (137)
T 3q49_B          101 QRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHChh
Confidence            999999886

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=2.6e-13  Score=97.00  Aligned_cols=89  Identities=19%  Similarity=0.218  Sum_probs=83.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|+++++.+|.++.++.++|.++. ..|++++|+.+|+++++.+|+++.++..+|.++.. .+++++|+.+
T Consensus        17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~   94 (118)
T 1elw_A           17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEEAKRT   94 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            378999999999999999999999999999987 69999999999999999999999999999998765 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |+++++++|++
T Consensus        95 ~~~~~~~~~~~  105 (118)
T 1elw_A           95 YEEGLKHEANN  105 (118)
T ss_dssp             HHHHHTTCTTC
T ss_pred             HHHHHHcCCCC
Confidence            99999999975

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.52  E-value=9.2e-14  Score=109.33  Aligned_cols=88  Identities=19%  Similarity=0.078  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++++.|..++++|++.+|.++.++..+|.++. .+|++++|+++|+++++++|+++.++.++|.++.. .|++++|+.+|
T Consensus        87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  164 (184)
T 3vtx_A           87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRDEAVKYF  164 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999998876 57999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|++
T Consensus       165 ~~al~~~p~~  174 (184)
T 3vtx_A          165 KKALEKEEKK  174 (184)
T ss_dssp             HHHHHTTHHH
T ss_pred             HHHHhCCccC
Confidence            9999999963

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.51  E-value=2.9e-13  Score=96.15  Aligned_cols=89  Identities=13%  Similarity=0.034  Sum_probs=83.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-CChHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINH-KDAPRA  209 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~--da~al~~lG~ll~~~~-gd~eeA  209 (224)
                      .+++++|+.+|+++++.+|.++.+++++|.++. ..|++++|+++|+++++++|+  +..++..+|.++.. . +++++|
T Consensus        19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~A   96 (112)
T 2kck_A           19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IEGKEVEA   96 (112)
T ss_dssp             SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CSSCSHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HhCCHHHH
Confidence            379999999999999999999999999999987 699999999999999999999  99999999988754 6 789999


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      +.+|++++...|.+
T Consensus        97 ~~~~~~~~~~~p~~  110 (112)
T 2kck_A           97 EIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHGGGCCCC
T ss_pred             HHHHHHHhhcccCC
Confidence            99999999999975

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.51  E-value=1.1e-13  Score=114.05  Aligned_cols=90  Identities=14%  Similarity=0.001  Sum_probs=83.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH---------  203 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~---------  203 (224)
                      .+++++|+.+|++||+.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++.++|.++....         
T Consensus        18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~   96 (217)
T 2pl2_A           18 LGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERG   96 (217)
T ss_dssp             TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccc
Confidence            368999999999999999999999999999987 6999999999999999999999999999999886640         


Q ss_pred             -CChHHHHHHHHHHHHhCCCC
Q 027404          204 -KDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       204 -gd~eeA~~~ferAL~l~P~d  223 (224)
                       |++++|+..|++|++++|++
T Consensus        97 ~g~~~~A~~~~~~al~~~P~~  117 (217)
T 2pl2_A           97 KGYLEQALSVLKDAERVNPRY  117 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccCHHHHHHHHHHHHHhCccc
Confidence             68999999999999999986

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.50  E-value=5.6e-13  Score=96.64  Aligned_cols=88  Identities=23%  Similarity=0.360  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. .+++++|+.+|
T Consensus        26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~  103 (131)
T 2vyi_A           26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVEAVAYY  103 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999998766 57999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       104 ~~~~~~~p~~  113 (131)
T 2vyi_A          104 KKALELDPDN  113 (131)
T ss_dssp             HHHHHHSTTC
T ss_pred             HHHHhcCccc
Confidence            9999999975

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.50  E-value=1.7e-13  Score=100.50  Aligned_cols=88  Identities=20%  Similarity=0.164  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.+++++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .+++++|+.+|
T Consensus        30 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  107 (133)
T 2lni_A           30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYTKAMDVY  107 (133)
T ss_dssp             TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            68899999999999999999999999999987 69999999999999999999999999999998766 57999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       108 ~~~~~~~p~~  117 (133)
T 2lni_A          108 QKALDLDSSC  117 (133)
T ss_dssp             HHHHHHCGGG
T ss_pred             HHHHHhCCCc
Confidence            9999999875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.50  E-value=1.7e-13  Score=134.83  Aligned_cols=88  Identities=23%  Similarity=0.267  Sum_probs=57.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |++++|+.+|++||+++|+++.+++++|.++. .+|++++|+++|++||+++|+++.+|.++|.++.. .+++++|+++|
T Consensus        23 G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g~~~~A~~~~  100 (723)
T 4gyw_A           23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQDVQGALQCY  100 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            56666666666666666666666666666665 46666666666666666666666666666666544 35666666666


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|++
T Consensus       101 ~kAl~l~P~~  110 (723)
T 4gyw_A          101 TRAIQINPAF  110 (723)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHhCCCC
Confidence            6666666654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.49  E-value=2e-13  Score=111.79  Aligned_cols=89  Identities=12%  Similarity=0.268  Sum_probs=80.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN-----------  202 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~-----------  202 (224)
                      +++++|+.+|++||+++|+++.+++++|.++. ..|++++|+++|+++++++|+++.++.++|.+++..           
T Consensus        68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~  146 (208)
T 3urz_A           68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD  146 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            79999999999999999999999999999987 699999999999999999999999999999776422           


Q ss_pred             -----------------------cCChHHHHHHHHHHHHhCCCC
Q 027404          203 -----------------------HKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       203 -----------------------~gd~eeA~~~ferAL~l~P~d  223 (224)
                                             .+++++|+.+|++|++++|+.
T Consensus       147 ~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          147 YKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence                                   146889999999999999963

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.1e-13  Score=100.46  Aligned_cols=88  Identities=19%  Similarity=0.118  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      +++++|+.+|+++++.+|++   +.++.++|.++. ..|++++|+.+|++++.++|+++.++..+|.++.. .+++++|+
T Consensus        42 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~  119 (148)
T 2dba_A           42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-LGRLDQAV  119 (148)
T ss_dssp             TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-cCCHHHHH
Confidence            79999999999999999998   899999999887 69999999999999999999999999999998876 57899999


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      .+|+++++++|++
T Consensus       120 ~~~~~al~~~p~~  132 (148)
T 2dba_A          120 LDLQRCVSLEPKN  132 (148)
T ss_dssp             HHHHHHHHHCSSC
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999999975

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.49  E-value=6.4e-13  Score=98.21  Aligned_cols=89  Identities=12%  Similarity=0.135  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCh
Q 027404          133 GKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDA  206 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~  206 (224)
                      .+++++|+.+|+++++.+|+++   .+++.+|.++. ..|++++|+.+|++++..+|++   +.++..+|.++.. .|++
T Consensus        15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~-~g~~   92 (129)
T 2xev_A           15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG-EGKN   92 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-cCCH
Confidence            3789999999999999999998   89999999987 6999999999999999999999   8999999998876 5899


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027404          207 PRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       207 eeA~~~ferAL~l~P~d  223 (224)
                      ++|+.+|+++++..|++
T Consensus        93 ~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           93 TEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHHCCCC
Confidence            99999999999999975

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.48  E-value=7.5e-13  Score=100.86  Aligned_cols=89  Identities=17%  Similarity=0.067  Sum_probs=83.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|+++++.+|.++.+++++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .+++++|+.+
T Consensus        26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~  103 (166)
T 1a17_A           26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRD  103 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccHHHHHHH
Confidence            368999999999999999999999999999987 69999999999999999999999999999988765 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |+++++++|++
T Consensus       104 ~~~a~~~~p~~  114 (166)
T 1a17_A          104 YETVVKVKPHD  114 (166)
T ss_dssp             HHHHHHHSTTC
T ss_pred             HHHHHHhCCCC
Confidence            99999999975

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.47  E-value=3.4e-13  Score=132.66  Aligned_cols=88  Identities=23%  Similarity=0.191  Sum_probs=84.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++||+++|+++.+++++|.++. .+|++++|+++|++||+++|+++.+|.++|.++.. .|++++|+++|
T Consensus        57 g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~eAi~~~  134 (723)
T 4gyw_A           57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNIPEAIASY  134 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            78999999999999999999999999999987 69999999999999999999999999999998866 58999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|++
T Consensus       135 ~~Al~l~P~~  144 (723)
T 4gyw_A          135 RTALKLKPDF  144 (723)
T ss_dssp             HHHHHHCSCC
T ss_pred             HHHHHhCCCC
Confidence            9999999986

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.47  E-value=1.6e-12  Score=93.40  Aligned_cols=88  Identities=22%  Similarity=0.382  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.+++++|.++. ..|++++|+.+|++++..+|.++.++..+|.++.. .+++++|+.+|
T Consensus        23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  100 (125)
T 1na0_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYY  100 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999998866 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       101 ~~~~~~~~~~  110 (125)
T 1na0_A          101 QKALELDPNN  110 (125)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHhCCCc
Confidence            9999999975

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.46  E-value=5.1e-13  Score=110.08  Aligned_cols=87  Identities=17%  Similarity=0.144  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|++|++++ +++.++.++|.++.. .|++++|+.+|
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~-~g~~~~A~~~~  174 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYA-LLGERDKAEASLKQALALE-DTPEIRSALAELYLS-MGRLDEALAQY  174 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999987 6999999999999999999 999999999998876 57999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       175 ~~al~~~P~~  184 (217)
T 2pl2_A          175 AKALEQAPKD  184 (217)
T ss_dssp             HHHHHHSTTC
T ss_pred             HHHHHhCCCC
Confidence            9999999986

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.46  E-value=4.5e-13  Score=98.83  Aligned_cols=84  Identities=13%  Similarity=0.112  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027404          137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (224)
Q Consensus       137 e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferA  216 (224)
                      +.|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.+|+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            35889999999999999999999999987 69999999999999999999999999999998876 57899999999999


Q ss_pred             HHhCCC
Q 027404          217 VHSAPD  222 (224)
Q Consensus       217 L~l~P~  222 (224)
                      ++++|+
T Consensus        80 l~~~~~   85 (115)
T 2kat_A           80 LAAAQS   85 (115)
T ss_dssp             HHHHHH
T ss_pred             HHhccc
Confidence            998874

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.44  E-value=1e-13  Score=110.88  Aligned_cols=85  Identities=11%  Similarity=0.059  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 027404          138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAV  217 (224)
Q Consensus       138 ~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL  217 (224)
                      .+...|+++++++|+++.+++++|.+++ .+|++++|+.+|++|+.++|+++.+|.++|.++.. .|++++|+.+|++|+
T Consensus        20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           20 NSGATLKDINAIPDDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAVAF   97 (151)
T ss_dssp             HTSCCTGGGCCSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred             HCCCCHHHHhCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHHHHH
Confidence            3444678889999999999999999988 69999999999999999999999999999998865 689999999999999


Q ss_pred             HhCCCCC
Q 027404          218 HSAPDDW  224 (224)
Q Consensus       218 ~l~P~d~  224 (224)
                      +++|++.
T Consensus        98 ~l~P~~~  104 (151)
T 3gyz_A           98 ALGKNDY  104 (151)
T ss_dssp             HHSSSCC
T ss_pred             hhCCCCc
Confidence            9999874

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.44  E-value=1.5e-12  Score=104.73  Aligned_cols=88  Identities=17%  Similarity=0.149  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA----------------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na----------------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~  197 (224)
                      +++++|+.+|++|+++.|.++                .+++++|.++. ..|++++|+.+|++|++++|+++.++..+|.
T Consensus        52 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  130 (198)
T 2fbn_A           52 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGV  130 (198)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            789999999999999999998                89999999987 6999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          198 LIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++.. .+++++|+.+|++|++++|++
T Consensus       131 ~~~~-~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          131 ANMY-FGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHH-cccHHHHHHHHHHHHHHCCCc
Confidence            8876 578999999999999999975

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.43  E-value=2e-12  Score=105.23  Aligned_cols=88  Identities=15%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYP-EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP-~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      +++++|+.+|+++++++| .+..+++++|.++. ..|++++|+.+|++|++.+|+++.++..+|.++.. .+++++|+.+
T Consensus        21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~   98 (228)
T 4i17_A           21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNNQEYIAT   98 (228)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccHHHHHHH
Confidence            789999999999999999 99999999999987 69999999999999999999999999999998876 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |+++++++|++
T Consensus        99 ~~~al~~~p~~  109 (228)
T 4i17_A           99 LTEGIKAVPGN  109 (228)
T ss_dssp             HHHHHHHSTTC
T ss_pred             HHHHHHHCCCc
Confidence            99999999985

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.42  E-value=1.9e-12  Score=101.62  Aligned_cols=89  Identities=10%  Similarity=0.155  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDF--VKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~--eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +++++|+.+|++|++++|+++.++.++|.+++...|++  ++|+.+|+++++.+|++..++..+|.++.. .+++++|+.
T Consensus        58 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~  136 (177)
T 2e2e_A           58 NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QANYAQAIE  136 (177)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cccHHHHHH
Confidence            68899999999999999999999999998833368888  999999999999999999999999988765 578999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      +|+++++++|++
T Consensus       137 ~~~~al~~~p~~  148 (177)
T 2e2e_A          137 LWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHTCCTT
T ss_pred             HHHHHHhhCCCC
Confidence            999999999875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.42  E-value=1.9e-12  Score=94.13  Aligned_cols=88  Identities=16%  Similarity=0.280  Sum_probs=81.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCC
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-------GNVLSMYGDLIWINHKD  205 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-------a~al~~lG~ll~~~~gd  205 (224)
                      .+++++|+.+|+++++.+|.++.+++++|.++. ..|++++|+.+|++++..+|++       +.++..+|.++.. .++
T Consensus        17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~   94 (131)
T 1elr_A           17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEK   94 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TTC
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-hcc
Confidence            368999999999999999999999999999987 6999999999999999999887       8999999988866 579


Q ss_pred             hHHHHHHHHHHHHhCCC
Q 027404          206 APRAKSYFDRAVHSAPD  222 (224)
Q Consensus       206 ~eeA~~~ferAL~l~P~  222 (224)
                      +++|+.+|++++++.|+
T Consensus        95 ~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           95 YKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            99999999999999884

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.42  E-value=2e-12  Score=114.35  Aligned_cols=88  Identities=17%  Similarity=0.185  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED---------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n---------------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      +++++|+.+|++||+++|++               +.+++++|.++. .+|++++|+.+|++||+++|+++.+++++|.+
T Consensus       161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  239 (336)
T 1p5q_A          161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEA  239 (336)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            79999999999999999999               699999999987 69999999999999999999999999999998


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          199 IWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       199 l~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.. .+++++|+.+|++|++++|++
T Consensus       240 ~~~-~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          240 HLA-VNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHH-CCCHHHHHHHHHHHHHHCCCC
Confidence            876 579999999999999999976

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.40  E-value=9.3e-13  Score=120.02  Aligned_cols=88  Identities=14%  Similarity=0.109  Sum_probs=63.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD-FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd-~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      +++++|+.+|++||+++|+++.+|+++|.++. ..|+ +++|+.+|++||+++|+++.+|+++|.++.. .+++++|+.+
T Consensus       111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~~eAl~~  188 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQELEF  188 (382)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHH
T ss_pred             CChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCHHHHHHH
Confidence            56677777777777777777777777777765 4675 7777777777777777777777777776654 3567777777


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++||+++|++
T Consensus       189 ~~kal~ldP~~  199 (382)
T 2h6f_A          189 IADILNQDAKN  199 (382)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHHhCccC
Confidence            77777777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.40  E-value=3.1e-13  Score=106.02  Aligned_cols=84  Identities=8%  Similarity=-0.114  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (224)
Q Consensus       139 A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~  218 (224)
                      +...|+++++++|+++.+++++|.+++ .+|++++|+.+|++++.++|+++.+|..+|.++.. .|++++|+.+|++|++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence            345799999999999999999999988 69999999999999999999999999999998865 6899999999999999


Q ss_pred             hCCCCC
Q 027404          219 SAPDDW  224 (224)
Q Consensus       219 l~P~d~  224 (224)
                      ++|++.
T Consensus        84 l~p~~~   89 (148)
T 2vgx_A           84 MDIXEP   89 (148)
T ss_dssp             HSTTCT
T ss_pred             cCCCCc
Confidence            999873

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.40  E-value=1.6e-12  Score=118.49  Aligned_cols=88  Identities=11%  Similarity=0.072  Sum_probs=83.3

Q ss_pred             C-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 K-ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~-d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      + ++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.+|.++|.++.. .|++++|+.+
T Consensus       145 g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~~eAl~~  222 (382)
T 2h6f_A          145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQY  222 (382)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCChHHHHHH
Confidence            5 4999999999999999999999999999987 69999999999999999999999999999998876 4789999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++||+++|++
T Consensus       223 ~~~al~l~P~~  233 (382)
T 2h6f_A          223 VDQLLKEDVRN  233 (382)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHHhCCCC
Confidence            99999999986

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.40  E-value=6.3e-12  Score=98.72  Aligned_cols=86  Identities=15%  Similarity=0.142  Sum_probs=60.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |++++|+.+|++||+++|+++.++.++|.++. ..|++++|+.++++++..+|+++.++..+|.++.. .+++++|+.++
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~   96 (184)
T 3vtx_A           19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM-IDEKQAAIDAL   96 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999998876 57777777777777777766666666666554432 23344444444


Q ss_pred             HHHHHhCC
Q 027404          214 DRAVHSAP  221 (224)
Q Consensus       214 erAL~l~P  221 (224)
                      +++++++|
T Consensus        97 ~~a~~~~~  104 (184)
T 3vtx_A           97 QRAIALNT  104 (184)
T ss_dssp             HHHHHHCT
T ss_pred             HHHHHhCc
Confidence            44444444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.39  E-value=5.2e-12  Score=103.50  Aligned_cols=88  Identities=14%  Similarity=0.107  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++|++.+|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.++.. .|++++|+.+|
T Consensus        57 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  134 (275)
T 1xnf_A           57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDL  134 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999998876 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       135 ~~a~~~~~~~  144 (275)
T 1xnf_A          135 LAFYQDDPND  144 (275)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHhCCCC
Confidence            9999999975

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.39  E-value=1.6e-12  Score=111.84  Aligned_cols=89  Identities=18%  Similarity=0.111  Sum_probs=83.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|++||+.+|+++.+++++|.++. ..|++++|+.+|++|++++|++..++.++|.++.. .|++++|+.+
T Consensus        17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~   94 (281)
T 2c2l_A           17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIAN   94 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            378999999999999999999999999999987 69999999999999999999999999999998876 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++|++++|++
T Consensus        95 ~~~al~l~p~~  105 (281)
T 2c2l_A           95 LQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHhCccc
Confidence            99999999864

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.38  E-value=4.3e-12  Score=110.09  Aligned_cols=88  Identities=17%  Similarity=0.150  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChH-HHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP-RAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~e-eA~~~  212 (224)
                      +++++|..+|+++++.+|+++.+++++|.++. .+|++++|+++|++|++++|+++.++.+++.+++.. |+++ +|..+
T Consensus       180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~-g~~~eaa~~~  257 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL-GKPPEVTNRY  257 (291)
T ss_dssp             THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence            68999999999999999999999999999887 699999999999999999999999999999888775 5565 46799


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      ++++++++|++
T Consensus       258 ~~~~~~~~P~~  268 (291)
T 3mkr_A          258 LSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHHhCCCC
Confidence            99999999986

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.38  E-value=4.8e-12  Score=101.15  Aligned_cols=88  Identities=11%  Similarity=0.046  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG----------------NVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da----------------~al~~lG~  197 (224)
                      +++++|+.+|++|++.+|+++.+++++|.++. ..|++++|+++|++++++.|.+.                .++.++|.
T Consensus        51 g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (213)
T 1hh8_A           51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  129 (213)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999888776                89999998


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          198 LIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++.. .|++++|+.+|+++++++|++
T Consensus       130 ~~~~-~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          130 MYAK-KEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHH-ccCHHHHHHHHHHHHHcCccc
Confidence            8866 578999999999999999964

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.38  E-value=2.6e-12  Score=104.52  Aligned_cols=87  Identities=14%  Similarity=0.064  Sum_probs=81.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHcCCh
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-------NVLSMYGDLIWINHKDA  206 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da-------~al~~lG~ll~~~~gd~  206 (224)
                      +++++|+.+|++|++.+|+++.++.++|.++. .+|++++|+.+|+++++++|+++       .++..+|.++.. .+++
T Consensus        56 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~-~~~~  133 (228)
T 4i17_A           56 KKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ-AGNI  133 (228)
T ss_dssp             TCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             hcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH-hccH
Confidence            68999999999999999999999999999987 69999999999999999999999       668889988765 5899


Q ss_pred             HHHHHHHHHHHHhCCC
Q 027404          207 PRAKSYFDRAVHSAPD  222 (224)
Q Consensus       207 eeA~~~ferAL~l~P~  222 (224)
                      ++|+.+|++|++++|+
T Consensus       134 ~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          134 EKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999999999996

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.37  E-value=1.9e-12  Score=101.60  Aligned_cols=92  Identities=12%  Similarity=0.233  Sum_probs=80.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCh--HH
Q 027404          131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDA--PR  208 (224)
Q Consensus       131 ~~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~--ee  208 (224)
                      ...+++++|+.+|+++++.+|.++.+++.+|.++. ..|++++|+.+|++|++++|+++.++..+|.+++...+++  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            34578899999999999999999999999999987 6999999999999999999999999999999844446788  99


Q ss_pred             HHHHHHHHHHhCCCC
Q 027404          209 AKSYFDRAVHSAPDD  223 (224)
Q Consensus       209 A~~~ferAL~l~P~d  223 (224)
                      |+.+|+++++++|++
T Consensus       100 A~~~~~~al~~~p~~  114 (177)
T 2e2e_A          100 TRAMIDKALALDSNE  114 (177)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCc
Confidence            999999999999975

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.37  E-value=1.2e-11  Score=89.36  Aligned_cols=87  Identities=22%  Similarity=0.349  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|..+|+++++.+|.++.+++++|.++. ..|++++|+++|++++..+|++..++..++.++.. .+++++|+.+|
T Consensus        49 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  126 (136)
T 2fo7_A           49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYY  126 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHHHHHH
Confidence            46667777777777777777777777776665 46777777777777777777777766666666543 45677777777


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      ++++.++|+
T Consensus       127 ~~~~~~~~~  135 (136)
T 2fo7_A          127 QKALELDPR  135 (136)
T ss_dssp             HHHHHHSTT
T ss_pred             HHHHccCCC
Confidence            777777665

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.37  E-value=6.4e-12  Score=116.91  Aligned_cols=90  Identities=17%  Similarity=0.067  Sum_probs=84.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      ..+++++|+.+|++||+++|+++.+++++|.++. .+|++++|+++|++|++++|+++.++.++|.++.. .+++++|+.
T Consensus        18 ~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~   95 (477)
T 1wao_1           18 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALR   95 (477)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence            3479999999999999999999999999999987 69999999999999999999999999999998876 578999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      +|++|++++|++
T Consensus        96 ~~~~al~~~p~~  107 (477)
T 1wao_1           96 DYETVVKVKPHD  107 (477)
T ss_dssp             HHHHHHHHSTTC
T ss_pred             HHHHHHHhCCCC
Confidence            999999999976

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.35  E-value=5.3e-12  Score=116.38  Aligned_cols=88  Identities=16%  Similarity=0.236  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED---------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n---------------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      +++++|+.+|++||+++|.+               ..+++++|.++. .+|++++|+.+|++||+++|+++.+|+++|.+
T Consensus       282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a  360 (457)
T 1kt0_A          282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEA  360 (457)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            79999999999999999999               799999999987 69999999999999999999999999999998


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          199 IWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       199 l~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++. .+++++|+.+|++|++++|++
T Consensus       361 ~~~-~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          361 QLL-MNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHH-TTCHHHHHHHHHHHHTTC---
T ss_pred             HHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            876 579999999999999999976

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.35  E-value=1.3e-12  Score=100.35  Aligned_cols=83  Identities=7%  Similarity=-0.128  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404          140 DVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       140 ~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      ...|+++++++|+++.+++++|.++. ..|++++|+.+|++++..+|+++.+|..+|.++.. .+++++|+.+|++|+++
T Consensus         4 ~~~l~~al~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A            4 GGTLAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALM   81 (142)
T ss_dssp             -----CCTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHcCCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhc
Confidence            35889999999999999999999987 69999999999999999999999999999998865 68999999999999999


Q ss_pred             CCCCC
Q 027404          220 APDDW  224 (224)
Q Consensus       220 ~P~d~  224 (224)
                      +|++.
T Consensus        82 ~p~~~   86 (142)
T 2xcb_A           82 DINEP   86 (142)
T ss_dssp             CTTCT
T ss_pred             CCCCc
Confidence            99873

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.35  E-value=2.3e-11  Score=87.78  Aligned_cols=88  Identities=22%  Similarity=0.346  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+.+|++++..+|.+..++..++.++.. .+++++|+.+|
T Consensus        15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~   92 (136)
T 2fo7_A           15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYY   92 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            68999999999999999999999999999887 68999999999999999999999999999988765 67899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++..|++
T Consensus        93 ~~~~~~~~~~  102 (136)
T 2fo7_A           93 QKALELDPRS  102 (136)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHhCCCC
Confidence            9999999864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.34  E-value=2.6e-12  Score=98.36  Aligned_cols=77  Identities=17%  Similarity=0.082  Sum_probs=70.1

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          145 EMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       145 rALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++..+||+.++++.+.|..++ .+|++++|+++|++||+++|+++.+|.++|.++.. .+++++|+.+|++|++++|++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhh
Confidence            556689999999999999998 69999999999999999999999999999998876 578999999999999999986

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.34  E-value=1.7e-11  Score=93.61  Aligned_cols=88  Identities=16%  Similarity=0.052  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|..+|+++++.+|.++.++..+|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. .+++++|+.+|
T Consensus        90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  167 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALD-NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-MGRHEEALPHF  167 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH-HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            45666666666666666666666666666555 46666666666666666666666666666665544 35666666666


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       168 ~~~~~~~~~~  177 (186)
T 3as5_A          168 KKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHcCCCc
Confidence            6666665543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.3e-11  Score=99.55  Aligned_cols=85  Identities=26%  Similarity=0.167  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.++.++|.++. ..|++++|+.+|+++++.+|+++.++..+|.++.. .|++++|+.+|
T Consensus       153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  230 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999998876 57899999999


Q ss_pred             HHHHHhC
Q 027404          214 DRAVHSA  220 (224)
Q Consensus       214 erAL~l~  220 (224)
                      +++++++
T Consensus       231 ~~a~~~~  237 (258)
T 3uq3_A          231 DAARTKD  237 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9999998

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.32  E-value=3.6e-11  Score=91.75  Aligned_cols=88  Identities=14%  Similarity=0.010  Sum_probs=81.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.++.++|.++. ..|++++|+++|++++..+|+++.++..+|.++.. .+++++|+.+|
T Consensus        56 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~  133 (186)
T 3as5_A           56 GAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGRFDEAIDSF  133 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHHHHHHH
Confidence            68999999999999999999999999999887 68999999999999999999999999999988765 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++.+|++
T Consensus       134 ~~~~~~~~~~  143 (186)
T 3as5_A          134 KIALGLRPNE  143 (186)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHhcCccc
Confidence            9999999875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.32  E-value=1.2e-11  Score=106.67  Aligned_cols=88  Identities=17%  Similarity=0.243  Sum_probs=60.0

Q ss_pred             CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~--na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +++++|+.+|+++++.+|.  ++.+++++|.++. .+|++++|+.+|+++++++|+++.+|..+|.++.. .|++++|+.
T Consensus       191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~  268 (365)
T 4eqf_A          191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDRSEEAVE  268 (365)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence            5667777777777777777  6677777776665 46777777777777777777777777777666554 456777777


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      +|+++++++|++
T Consensus       269 ~~~~al~~~p~~  280 (365)
T 4eqf_A          269 AYTRALEIQPGF  280 (365)
T ss_dssp             HHHHHHHHCTTC
T ss_pred             HHHHHHhcCCCc
Confidence            777777766653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.31  E-value=7e-12  Score=113.19  Aligned_cols=88  Identities=18%  Similarity=0.154  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIK----------------AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe----------------~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~  197 (224)
                      +++++|+.+|++||+                .+|.++.++.++|.++. .+|++++|+++|++||+++|+++.+++.+|.
T Consensus       237 g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  315 (370)
T 1ihg_A          237 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  315 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            789999999999999                88889999999999987 6999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          198 LIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++.. .+++++|+.+|++|++++|++
T Consensus       316 ~~~~-~g~~~eA~~~l~~Al~l~P~~  340 (370)
T 1ihg_A          316 GWQG-LKEYDQALADLKKAQEIAPED  340 (370)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            8876 578999999999999999975

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.31  E-value=1.3e-11  Score=106.40  Aligned_cols=87  Identities=11%  Similarity=-0.003  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++..+|.++.. .|++++|+.+|
T Consensus        79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~  156 (365)
T 4eqf_A           79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCLELQPNNLKALMALAVSYTN-TSHQQDACEAL  156 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc-cccHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999998866 58999999999


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      +++++++|+
T Consensus       157 ~~al~~~p~  165 (365)
T 4eqf_A          157 KNWIKQNPK  165 (365)
T ss_dssp             HHHHHHCHH
T ss_pred             HHHHHhCcc
Confidence            999999885

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.29  E-value=3.4e-11  Score=96.85  Aligned_cols=87  Identities=15%  Similarity=0.080  Sum_probs=45.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+.+|+++++.+|+++.++..+|.++.. .+++++|+.+|
T Consensus       105 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  182 (243)
T 2q7f_A          105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-EGMLDEALSQF  182 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            34555555555555555555555555555544 35555555555555555555555555555544433 24455555555


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      +++++.+|+
T Consensus       183 ~~~~~~~~~  191 (243)
T 2q7f_A          183 AAVTEQDPG  191 (243)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHhCcc
Confidence            555555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.29  E-value=4.9e-12  Score=90.38  Aligned_cols=80  Identities=14%  Similarity=0.139  Sum_probs=72.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDAL-VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~-~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      +++++|+.+|+++++.+|+++. +++++|.++. ..|++++|+++|++|++++|++..++.+         +.+.+|+.+
T Consensus        14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~---------~~~~~a~~~   83 (99)
T 2kc7_A           14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR---------KMVMDILNF   83 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH---------HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH---------HHHHHHHHH
Confidence            6899999999999999999999 9999999987 6999999999999999999999988743         247889999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++++.++|++
T Consensus        84 ~~~~~~~~p~~   94 (99)
T 2kc7_A           84 YNKDMYNQLEH   94 (99)
T ss_dssp             HCCTTHHHHCC
T ss_pred             HHHHhccCccc
Confidence            99999988875

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.28  E-value=1.2e-11  Score=90.36  Aligned_cols=72  Identities=14%  Similarity=0.087  Sum_probs=64.3

Q ss_pred             HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          149 AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       149 ~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      .+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.+|.++|.++.. .|++++|+.+|++|+++.|.
T Consensus         2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhc
Confidence            58999999999999987 69999999999999999999999999999998866 58999999999999998763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.28  E-value=2.3e-11  Score=104.67  Aligned_cols=88  Identities=8%  Similarity=-0.032  Sum_probs=78.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHH----------------------------------HHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAE----------------------------------EYCG  179 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe----------------------------------~~~e  179 (224)
                      +++++|+.+|++|++.+|+++.+++++|.++. .+|++++|+                                  +.|+
T Consensus       131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~  209 (287)
T 3qou_A          131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ  209 (287)
T ss_dssp             TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence            79999999999999999999999999999887 689888765                                  4456


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          180 RAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       180 rAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++++++|+++.++.++|.++.. .|++++|+..|+++++++|++
T Consensus       210 ~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          210 QQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhccccc
Confidence            6688899999999999998765 689999999999999999975

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.28  E-value=1.1e-11  Score=114.45  Aligned_cols=88  Identities=9%  Similarity=-0.135  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--------GDFVKAEEYCGRAILAKP---GDGNVLSMYGDLIWIN  202 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~--------Gd~eeAe~~~erAL~ldP---~da~al~~lG~ll~~~  202 (224)
                      +++++|+.+|++|++++|+++.+|+++|.++. ..        |++++|+.+|++|++++|   +++.+|.++|.+++. 
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-  270 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-  270 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-
Confidence            68999999999999999999999999999987 57        999999999999999999   999999999998876 


Q ss_pred             cCChHHHHHHHHHHHHhCCCC
Q 027404          203 HKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       203 ~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .|++++|+.+|++|++++|++
T Consensus       271 ~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          271 EESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999986

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.28  E-value=2.9e-11  Score=112.58  Aligned_cols=88  Identities=15%  Similarity=0.129  Sum_probs=66.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++|++++|+++.+++++|.++. .+|++++|+++|++|++++|+++.++.++|.++.. .|++++|+++|
T Consensus        37 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  114 (568)
T 2vsy_A           37 GDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AGQAEAAAAAY  114 (568)
T ss_dssp             TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            57777777777777777777777777777766 57777777777777777777777777777776654 46777777777


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       115 ~~al~~~p~~  124 (568)
T 2vsy_A          115 TRAHQLLPEE  124 (568)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHhCCCC
Confidence            7777777764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.27  E-value=3.3e-11  Score=103.03  Aligned_cols=87  Identities=16%  Similarity=0.056  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|++++|+.+|
T Consensus       231 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  308 (368)
T 1fch_A          231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAVEHF  308 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            45555555555555555555555555555544 35555555555555555555555555555554443 24555555555


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      +++++++|+
T Consensus       309 ~~al~~~~~  317 (368)
T 1fch_A          309 LEALNMQRK  317 (368)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHhCCC
Confidence            555555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.27  E-value=9.3e-11  Score=94.24  Aligned_cols=88  Identities=18%  Similarity=0.286  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+++|+++++.+|+++.++..+|.++.. .+++++|+.+|
T Consensus        71 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~  148 (243)
T 2q7f_A           71 NELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQPKLALPYL  148 (243)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccHHHHHHHH
Confidence            68899999999999999999999999999887 69999999999999999999999999999988765 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       149 ~~~~~~~~~~  158 (243)
T 2q7f_A          149 QRAVELNEND  158 (243)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHhCCcc
Confidence            9999998865

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.27  E-value=6.7e-12  Score=111.24  Aligned_cols=89  Identities=20%  Similarity=0.144  Sum_probs=78.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDA-----------------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY  195 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na-----------------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l  195 (224)
                      .+++++|+.+|++||+.+|++.                 .+++++|.++. .+|++++|+.+|++||+++|+++.+|+++
T Consensus       192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~l  270 (338)
T 2if4_A          192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPKALFRR  270 (338)
T ss_dssp             SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3789999999999999999988                 38999999887 69999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          196 GDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       196 G~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      |.++.. .+++++|+.+|++|++++|++
T Consensus       271 g~a~~~-~g~~~~A~~~l~~al~l~p~~  297 (338)
T 2if4_A          271 GKAKAE-LGQMDSARDDFRKAQKYAPDD  297 (338)
T ss_dssp             HHHHHT-TTCHHHHHHHHHHTTC-----
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence            998865 579999999999999999975

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.26  E-value=7.4e-11  Score=100.83  Aligned_cols=88  Identities=9%  Similarity=0.012  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.+++++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|++++|+.+|
T Consensus        78 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  155 (368)
T 1fch_A           78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQRQACEIL  155 (368)
T ss_dssp             TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999998765 68999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       156 ~~~~~~~~~~  165 (368)
T 1fch_A          156 RDWLRYTPAY  165 (368)
T ss_dssp             HHHHHTSTTT
T ss_pred             HHHHHhCcCc
Confidence            9999999975

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.25  E-value=5.5e-11  Score=94.94  Aligned_cols=86  Identities=14%  Similarity=0.060  Sum_probs=78.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|++++  +| ++.+++++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .+++++|+.+
T Consensus        19 ~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~   93 (213)
T 1hh8_A           19 KKDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKD   93 (213)
T ss_dssp             TTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHHHHHH
Confidence            378999999999996  45 7899999999987 69999999999999999999999999999998876 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++++++.|++
T Consensus        94 ~~~al~~~~~~  104 (213)
T 1hh8_A           94 LKEALIQLRGN  104 (213)
T ss_dssp             HHHHHHTTTTC
T ss_pred             HHHHHHhCCCc
Confidence            99999998874

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.24  E-value=3.5e-11  Score=98.88  Aligned_cols=88  Identities=17%  Similarity=0.239  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|..++. .+++++|+.+|
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  165 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSF  165 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999933333 35899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       166 ~~a~~~~p~~  175 (272)
T 3u4t_A          166 VKVLELKPNI  175 (272)
T ss_dssp             HHHHHHSTTC
T ss_pred             HHHHHhCccc
Confidence            9999999975

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.24  E-value=8.1e-11  Score=102.53  Aligned_cols=87  Identities=21%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|..+++++++.+|.++.+++++|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++|+.+|
T Consensus        47 ~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~  124 (388)
T 1w3b_A           47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA-AGDMEGAVQAY  124 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HSCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            35555555566666666666666666665554 45666666666666666666665555555555443 34555555555


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      +++++++|+
T Consensus       125 ~~al~~~p~  133 (388)
T 1w3b_A          125 VSALQYNPD  133 (388)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHhCCC
Confidence            555555554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.23  E-value=1e-10  Score=98.37  Aligned_cols=87  Identities=14%  Similarity=0.119  Sum_probs=82.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|+++++++|++..++..+|.++.. .+++++|+.+
T Consensus        16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~   93 (359)
T 3ieg_A           16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKLDEAEDD   93 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCChHHHHHH
Confidence            378999999999999999999999999999987 69999999999999999999999999999998876 5789999999


Q ss_pred             HHHHHHhCC
Q 027404          213 FDRAVHSAP  221 (224)
Q Consensus       213 ferAL~l~P  221 (224)
                      |+++++++|
T Consensus        94 ~~~~~~~~~  102 (359)
T 3ieg_A           94 FKKVLKSNP  102 (359)
T ss_dssp             HHHHHTSCC
T ss_pred             HHHHHhcCC
Confidence            999999998

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.23  E-value=2.5e-11  Score=112.02  Aligned_cols=87  Identities=14%  Similarity=0.066  Sum_probs=81.3

Q ss_pred             CCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------
Q 027404          134 KES-ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH---------  203 (224)
Q Consensus       134 ~d~-e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~---------  203 (224)
                      +++ ++|+.+|++|++++|+++.+|+++|.++. .+|++++|+++|++|++++|+ +.++.++|.++.. .         
T Consensus       116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~-~~~~~~~~~~  192 (474)
T 4abn_A          116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ-LQTDSGDEHS  192 (474)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT-CCCSCHHHHH
T ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH-hccCChhhhh
Confidence            688 99999999999999999999999999988 699999999999999999999 7999999988765 5         


Q ss_pred             CChHHHHHHHHHHHHhCCCC
Q 027404          204 KDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       204 gd~eeA~~~ferAL~l~P~d  223 (224)
                      +++++|+.+|++|++++|++
T Consensus       193 g~~~~A~~~~~~al~~~p~~  212 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLD  212 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHHHHHHHHHhCCCC
Confidence            68999999999999999986

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.23  E-value=7.2e-11  Score=95.22  Aligned_cols=88  Identities=19%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027404          134 KESESMDVYYQEMIK--------------------------AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG  187 (224)
Q Consensus       134 ~d~e~A~~~yerALe--------------------------~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~  187 (224)
                      +++++|+.+|+++++                          .+|.++.++.++|.++. ..|++++|+.+|++++..+|+
T Consensus        93 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~  171 (258)
T 3uq3_A           93 GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPE  171 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcc
Confidence            567777777777777                          77888899999999987 699999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          188 DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       188 da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++.++..+|.++.. .+++++|+.+|+++++++|++
T Consensus       172 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~  206 (258)
T 3uq3_A          172 DARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNF  206 (258)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHH
Confidence            99999999998866 579999999999999999975

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.22  E-value=1.4e-10  Score=96.75  Aligned_cols=87  Identities=17%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+.+|+++++.+|+++.++..+|.++.. .+++++|+.+|
T Consensus       152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  229 (327)
T 3cv0_A          152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEALDAY  229 (327)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            34555555555555555555555555555444 35555555555555555555555555555544433 34455555555


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      +++++++|+
T Consensus       230 ~~a~~~~~~  238 (327)
T 3cv0_A          230 NRALDINPG  238 (327)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHcCCC
Confidence            555555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.22  E-value=2e-10  Score=95.85  Aligned_cols=88  Identities=14%  Similarity=-0.013  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|+++++++|++..++..+|.++.. .+++++|+.+|
T Consensus        35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  112 (327)
T 3cv0_A           35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALASL  112 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999998765 67999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       113 ~~~~~~~~~~  122 (327)
T 3cv0_A          113 RAWLLSQPQY  122 (327)
T ss_dssp             HHHHHTSTTT
T ss_pred             HHHHHhCCcc
Confidence            9999999975

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.22  E-value=2.3e-11  Score=117.46  Aligned_cols=87  Identities=7%  Similarity=0.006  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++|++.+|+++.+++++|.++. .+|++++|+++|++|++++|+++.++.++|.++.. .|++++ +.+|
T Consensus       447 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g~~~~-~~~~  523 (681)
T 2pzi_A          447 GDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AGNTDE-HKFY  523 (681)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCCCT-TCHH
T ss_pred             CCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChHH-HHHH
Confidence            78999999999999999999999999999887 69999999999999999999999999999988766 478888 9999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|++
T Consensus       524 ~~al~~~P~~  533 (681)
T 2pzi_A          524 QTVWSTNDGV  533 (681)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHhCCch
Confidence            9999999875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.22  E-value=1.6e-10  Score=100.70  Aligned_cols=88  Identities=15%  Similarity=0.129  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.++..++.++. ..|++++|+.+++++++.+|.++.++..+|.++.. .|++++|+.+|
T Consensus        13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~   90 (388)
T 1w3b_A           13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE-RGQLQEAIEHY   90 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            78999999999999999999999999999887 69999999999999999999999999999998876 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus        91 ~~al~~~p~~  100 (388)
T 1w3b_A           91 RHALRLKPDF  100 (388)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHcCcch
Confidence            9999999975

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.21  E-value=3.7e-11  Score=98.40  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=82.3

Q ss_pred             CCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChH
Q 027404          132 SGKESESMDVYYQEMIKA----YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP  207 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~----dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~e  207 (224)
                      ..+++++|+.+|+++++.    +|.++.+++.+|.++. ..|++++|+.+|++|++++|+++.++..+|.++.. .++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHH
Confidence            347899999999999998    4567899999999987 69999999999999999999999999999998876 57999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027404          208 RAKSYFDRAVHSAPDD  223 (224)
Q Consensus       208 eA~~~ferAL~l~P~d  223 (224)
                      +|+.+|+++++++|++
T Consensus        95 ~A~~~~~~al~~~~~~  110 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTY  110 (275)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhcCccc
Confidence            9999999999999975

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.21  E-value=9.3e-12  Score=89.33  Aligned_cols=81  Identities=14%  Similarity=0.093  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCh
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWINHKDA  206 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~~~gd~  206 (224)
                      .+++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|++|++++|++      ..++..+|.++... +++
T Consensus        17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~   94 (111)
T 2l6j_A           17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAV-GSV   94 (111)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHH-HCC
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH-HhH
Confidence            378999999999999999999999999999987 6999999999999999999999      88888888877654 467


Q ss_pred             HHHHHHHHH
Q 027404          207 PRAKSYFDR  215 (224)
Q Consensus       207 eeA~~~fer  215 (224)
                      ++|+..|++
T Consensus        95 ~~a~~~~~~  103 (111)
T 2l6j_A           95 QIPVVEVDE  103 (111)
T ss_dssp             CCCSSSSSS
T ss_pred             hhhHhHHHH
Confidence            777766554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.20  E-value=7.7e-11  Score=98.11  Aligned_cols=89  Identities=12%  Similarity=0.041  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH-----
Q 027404          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWIN-----  202 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~-----  202 (224)
                      +++++|+.+|+++++.+|++   +.+++.+|.+++ .+|++++|+.+|+++++..|++   +.+++.+|.+++..     
T Consensus        29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            79999999999999999999   899999999988 6999999999999999998854   66888999887651     


Q ss_pred             --cCChHHHHHHHHHHHHhCCCC
Q 027404          203 --HKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       203 --~gd~eeA~~~ferAL~l~P~d  223 (224)
                        .+++++|+.+|+++++..|++
T Consensus       108 ~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A          108 LDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             SCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccchhHHHHHHHHHHHHHHCcCc
Confidence              468999999999999999975

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.20  E-value=1.4e-10  Score=96.91  Aligned_cols=88  Identities=13%  Similarity=0.194  Sum_probs=59.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G-d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      +++++|..+|+++++.+|+++.+++.+|.++. ..| ++++|+.+|++++.++|+++.++..+|.++.. .+++++|+.+
T Consensus        70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~  147 (330)
T 3hym_B           70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYL-MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV-ESEHDQAMAA  147 (330)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH-HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-ccCHHHHHHH
Confidence            46667777777777777777777777776665 466 67777777777777777777777666666554 3566777777


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++++++.|++
T Consensus       148 ~~~a~~~~~~~  158 (330)
T 3hym_B          148 YFTAAQLMKGC  158 (330)
T ss_dssp             HHHHHHHTTTC
T ss_pred             HHHHHHhcccc
Confidence            77777666653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.20  E-value=1.5e-10  Score=94.16  Aligned_cols=88  Identities=23%  Similarity=0.296  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL--AKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~--ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +++++|+.+|+++++.+|.++.++.++|.++. ..|++++|+++|++++.  ..|.++.++..+|.++.. .+++++|+.
T Consensus        85 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~  162 (252)
T 2ho1_A           85 MEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MKKPAQAKE  162 (252)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cCCHHHHHH
Confidence            56777777777777777777777777777765 57777777777777777  667777777777766654 466777777


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      +|+++++++|++
T Consensus       163 ~~~~~~~~~~~~  174 (252)
T 2ho1_A          163 YFEKSLRLNRNQ  174 (252)
T ss_dssp             HHHHHHHHCSCC
T ss_pred             HHHHHHhcCccc
Confidence            777777777653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.20  E-value=7.4e-11  Score=113.98  Aligned_cols=91  Identities=11%  Similarity=-0.038  Sum_probs=84.2

Q ss_pred             CCCCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027404          132 SGKESESMDVYYQEMI--------KAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH  203 (224)
Q Consensus       132 ~~~d~e~A~~~yerAL--------e~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~  203 (224)
                      ..+++++|+.+|++|+        +.+|+++.+++++|.++. .+|++++|+++|++|++++|+++.+|+++|.++.. .
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~  480 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-T  480 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-c
Confidence            4478999999999999        999999999999999987 69999999999999999999999999999998876 5


Q ss_pred             CChHHHHHHHHHHHHhCCCCC
Q 027404          204 KDAPRAKSYFDRAVHSAPDDW  224 (224)
Q Consensus       204 gd~eeA~~~ferAL~l~P~d~  224 (224)
                      |++++|+..|++|++++|++.
T Consensus       481 g~~~~A~~~~~~al~l~P~~~  501 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGEL  501 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCS
T ss_pred             CCHHHHHHHHHHHHHhCCCCh
Confidence            799999999999999999863

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.20  E-value=1.9e-10  Score=90.79  Aligned_cols=26  Identities=15%  Similarity=0.330  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHH
Q 027404          137 ESMDVYYQEMIKAYPEDALVLANYAK  162 (224)
Q Consensus       137 e~A~~~yerALe~dP~na~~l~nlA~  162 (224)
                      ++|..+|+++++.+|.++.++.++|.
T Consensus        59 ~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A           59 DKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            33333333333333333333333333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.20  E-value=2.1e-10  Score=90.60  Aligned_cols=83  Identities=19%  Similarity=0.281  Sum_probs=78.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH-KDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~-gd~eeA~~~  212 (224)
                      +++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. . +++++|+.+
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~   99 (225)
T 2vq2_A           22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAY   99 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCcHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999988765 6 789999999


Q ss_pred             HHHHHH
Q 027404          213 FDRAVH  218 (224)
Q Consensus       213 ferAL~  218 (224)
                      |+++++
T Consensus       100 ~~~~~~  105 (225)
T 2vq2_A          100 FDKALA  105 (225)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999998

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.20  E-value=1.6e-10  Score=101.60  Aligned_cols=88  Identities=14%  Similarity=0.126  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.+++++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|++++|+.+|
T Consensus        40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~  117 (450)
T 2y4t_A           40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QGKLDEAEDDF  117 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            78999999999999999999999999999987 69999999999999999999999999999998866 58999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       118 ~~~~~~~~~~  127 (450)
T 2y4t_A          118 KKVLKSNPSE  127 (450)
T ss_dssp             HHHHTSCCCH
T ss_pred             HHHHhcCCCC
Confidence            9999999964

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.19  E-value=2.9e-10  Score=92.52  Aligned_cols=88  Identities=17%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+.+|+++++.+|++..++..++.++.. .+++++|+.+|
T Consensus       155 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~  232 (252)
T 2ho1_A          155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLY-KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV-FEDRDTAASYG  232 (252)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-ccCHHHHHHHH
Confidence            56677777777777777777777777776665 46777777777777777777777776666665543 46677777777


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++++++.|++
T Consensus       233 ~~~~~~~p~~  242 (252)
T 2ho1_A          233 LQLKRLYPGS  242 (252)
T ss_dssp             HHHHHHCTTS
T ss_pred             HHHHHHCCCC
Confidence            7777777654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.19  E-value=2.1e-10  Score=106.75  Aligned_cols=88  Identities=15%  Similarity=0.038  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---CChHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH---KDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~---gd~eeA~  210 (224)
                      +++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.++.+++.++.. .   +++++|+
T Consensus        71 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~g~~~~A~  148 (568)
T 2vsy_A           71 QRHAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLS  148 (568)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhccccHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999998765 5   7899999


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      ++|+++++.+|++
T Consensus       149 ~~~~~al~~~p~~  161 (568)
T 2vsy_A          149 AQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHHHhcCCcc
Confidence            9999999999975

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.18  E-value=2.9e-10  Score=95.57  Aligned_cols=89  Identities=15%  Similarity=0.080  Sum_probs=83.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. .+++++|+.+
T Consensus       133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~  210 (359)
T 3ieg_A          133 GADYTAAITFLDKILEVCVWDAELRELRAECFI-KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ-LGDHELSLSE  210 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            368999999999999999999999999999987 69999999999999999999999999999998876 5789999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |+++++++|++
T Consensus       211 ~~~a~~~~~~~  221 (359)
T 3ieg_A          211 VRECLKLDQDH  221 (359)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHhhCccc
Confidence            99999999975

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.18  E-value=1.7e-10  Score=96.43  Aligned_cols=87  Identities=15%  Similarity=0.134  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      ++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+.+|+++++..|++..++..+|.++.. .+++++|+.+|+
T Consensus       106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~  183 (330)
T 3hym_B          106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-TNNSKLAERFFS  183 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            6778888888888888888888888887776 57888888888888888888877777777776654 467888888888


Q ss_pred             HHHHhCCCC
Q 027404          215 RAVHSAPDD  223 (224)
Q Consensus       215 rAL~l~P~d  223 (224)
                      ++++++|++
T Consensus       184 ~al~~~~~~  192 (330)
T 3hym_B          184 QALSIAPED  192 (330)
T ss_dssp             HHHTTCTTC
T ss_pred             HHHHhCCCC
Confidence            888877764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.18  E-value=3.1e-10  Score=78.63  Aligned_cols=65  Identities=22%  Similarity=0.332  Sum_probs=34.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI  199 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll  199 (224)
                      +++++|+.+|++|++.+|+++.+++++|.++. ..|++++|+.+|+++++++|+++.++.++|.++
T Consensus        23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34555555555555555555555555555544 355555555555555555555555555555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.17  E-value=9e-11  Score=89.44  Aligned_cols=69  Identities=16%  Similarity=0.189  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .+.++.++|.+++ .+|++++|+.+|++||+++|+++.+|.++|.+++. .+++++|+.+|++|++++|++
T Consensus         7 ~A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            7 AAIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCccc
Confidence            4678889999998 69999999999999999999999999999998876 579999999999999998864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.17  E-value=2.3e-11  Score=96.36  Aligned_cols=88  Identities=11%  Similarity=-0.039  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHH----------------------------------HHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAE----------------------------------EYCG  179 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe----------------------------------~~~e  179 (224)
                      +++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+                                  .+|+
T Consensus        20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~   98 (176)
T 2r5s_A           20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLE   98 (176)
T ss_dssp             TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHH
Confidence            67888888888888888888888888888776 577766554                                  4455


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          180 RAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       180 rAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++++++|+++.++..+|.++.. .|++++|+.+|+++++++|+.
T Consensus        99 ~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A           99 QELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCccc
Confidence            5666778888888888877655 578899999999999888863

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.16  E-value=1e-10  Score=100.62  Aligned_cols=86  Identities=17%  Similarity=0.227  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCChHHHHHHH
Q 027404          136 SESMDVYYQEMIK-AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-VLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       136 ~e~A~~~yerALe-~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~-al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++|...|++||+ ++|+++.+|.++|.++. .+|++++|+++|++||+++|+++. +|..++.++.. .+++++|+.+|
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~  157 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            4889999999999 69999999999998876 689999999999999999999886 88889887755 46788888888


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|.+
T Consensus       158 ~~a~~~~p~~  167 (308)
T 2ond_A          158 KKAREDARTR  167 (308)
T ss_dssp             HHHHTSTTCC
T ss_pred             HHHHhcCCCC
Confidence            8888888764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.16  E-value=3.2e-10  Score=99.74  Aligned_cols=88  Identities=16%  Similarity=0.175  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDAL----VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~----~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      +++++|+.+|+++++.+|+++.    ++.++|.++. ..|++++|+.+|+++++++|+++.+|..+|.++.. .+++++|
T Consensus       271 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-~~~~~~A  348 (450)
T 2y4t_A          271 GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS-KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI-EEMYDEA  348 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hcCHHHH
Confidence            6899999999999999999964    7888999887 69999999999999999999999999999998865 6899999


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      +.+|+++++++|++
T Consensus       349 ~~~~~~al~~~p~~  362 (450)
T 2y4t_A          349 IQDYETAQEHNEND  362 (450)
T ss_dssp             HHHHHHHHTTSSSC
T ss_pred             HHHHHHHHHhCcch
Confidence            99999999999986

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.16  E-value=1.3e-10  Score=95.41  Aligned_cols=87  Identities=9%  Similarity=0.055  Sum_probs=58.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----GNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d----a~al~~lG~ll~~~~gd~eeA  209 (224)
                      +++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|++++. .|.+    +.++..+|.++.. .+++++|
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~~~~~~A   93 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-KGQDSLA   93 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-cccHHHH
Confidence            56777777777777777777777777777665 57777777777777776 3333    3336667766554 4667777


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      +.+|+++++++|++
T Consensus        94 ~~~~~~a~~~~~~~  107 (272)
T 3u4t_A           94 IQQYQAAVDRDTTR  107 (272)
T ss_dssp             HHHHHHHHHHSTTC
T ss_pred             HHHHHHHHhcCccc
Confidence            77777777777754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.16  E-value=2e-10  Score=98.81  Aligned_cols=86  Identities=16%  Similarity=0.179  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH------HcCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 027404          137 ESMDVYYQEMIKAYPEDALVLANYAKFLKE------IRGDF-------VKAEEYCGRAIL-AKPGDGNVLSMYGDLIWIN  202 (224)
Q Consensus       137 e~A~~~yerALe~dP~na~~l~nlA~~l~e------~~Gd~-------eeAe~~~erAL~-ldP~da~al~~lG~ll~~~  202 (224)
                      ++|+..|++||+.+|+++.+|++||.++..      ..|++       ++|+.+|++|++ ++|++..+|..+|.++.. 
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~-  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            789999999999999999999999998753      24885       899999999999 799999999999988755 


Q ss_pred             cCChHHHHHHHHHHHHhCCCC
Q 027404          203 HKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       203 ~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .+++++|+..|++|++++|++
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~  132 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDID  132 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSC
T ss_pred             cCCHHHHHHHHHHHHhccccC
Confidence            679999999999999999975

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.15  E-value=4.3e-10  Score=85.38  Aligned_cols=84  Identities=15%  Similarity=-0.052  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL--IWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l--l~~~~gd~eeA~~  211 (224)
                      +++++|+.+|+++++.+|.++.+++++|.++. ..|++++|+.+|+++++++|++..++..++.+  +.. .+++++|+.
T Consensus        61 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~-~~~~~~A~~  138 (166)
T 1a17_A           61 ECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-QKAFERAIA  138 (166)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999998666554  444 468999999


Q ss_pred             HHHHHHHh
Q 027404          212 YFDRAVHS  219 (224)
Q Consensus       212 ~ferAL~l  219 (224)
                      +++++..+
T Consensus       139 ~~~~~~~~  146 (166)
T 1a17_A          139 GDEHKRSV  146 (166)
T ss_dssp             HHHHHHHH
T ss_pred             cccchHHH
Confidence            99988764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.15  E-value=2.9e-10  Score=78.74  Aligned_cols=70  Identities=21%  Similarity=0.365  Sum_probs=64.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       152 ~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .++.+++++|.++. ..|++++|+.+|++|++++|+++.++..+|.++.. .+++++|+.+|+++++++|++
T Consensus         7 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            7 NSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence            46789999999887 69999999999999999999999999999998866 579999999999999999975

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.14  E-value=5.4e-10  Score=99.23  Aligned_cols=87  Identities=17%  Similarity=0.084  Sum_probs=81.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+| ++.++.++|.++. ..|++++|+.+|+++++++|++..++..+|.++.. .|++++|+.+|
T Consensus        20 g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~   96 (514)
T 2gw1_A           20 KKYDDAIKYYNWALELKE-DPVFYSNLSACYV-SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG-LGKFADAMFDL   96 (514)
T ss_dssp             SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHH-HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            689999999999999999 6999999999987 69999999999999999999999999999998876 57999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|.+
T Consensus        97 ~~~~~~~~~~  106 (514)
T 2gw1_A           97 SVLSLNGDFN  106 (514)
T ss_dssp             HHHHHSSSCC
T ss_pred             HHHHhcCCCc
Confidence            9999998853

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.13  E-value=2.9e-10  Score=93.55  Aligned_cols=89  Identities=20%  Similarity=0.135  Sum_probs=79.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-----
Q 027404          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWIN-----  202 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~---al~~lG~ll~~~-----  202 (224)
                      +++++|+.+|+++++.+|+++   .+++++|.+++ .+|++++|+.+|+++++.+|+++.   +++.+|.++...     
T Consensus        18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~   96 (225)
T 2yhc_A           18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL   96 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence            789999999999999999874   79999999987 699999999999999999999865   788888877642     


Q ss_pred             ------------cCChHHHHHHHHHHHHhCCCC
Q 027404          203 ------------HKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       203 ------------~gd~eeA~~~ferAL~l~P~d  223 (224)
                                  .+++++|+.+|+++++..|++
T Consensus        97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~  129 (225)
T 2yhc_A           97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS  129 (225)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred             hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence                        357999999999999999985

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.12  E-value=3.7e-10  Score=89.33  Aligned_cols=79  Identities=15%  Similarity=0.107  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404          138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD--GNVLSMYGDLIWINHKDAPRAKSYFDR  215 (224)
Q Consensus       138 ~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d--a~al~~lG~ll~~~~gd~eeA~~~fer  215 (224)
                      .|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|+++++++|++  +.++.+++.++.. .|+.++|+..|++
T Consensus        92 ~a~~~~~~al~~~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-~g~~~~A~~~y~~  169 (176)
T 2r5s_A           92 PELKRLEQELAANPDNFELACELAVQYN-QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-LGQGNAIASKYRR  169 (176)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-HCSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-hCCCCcHHHHHHH
Confidence            4799999999999999999999999987 6999999999999999999986  5689999988765 5789999999999


Q ss_pred             HHH
Q 027404          216 AVH  218 (224)
Q Consensus       216 AL~  218 (224)
                      ++.
T Consensus       170 al~  172 (176)
T 2r5s_A          170 QLY  172 (176)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            985

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.12  E-value=3.3e-10  Score=84.09  Aligned_cols=71  Identities=17%  Similarity=0.067  Sum_probs=65.4

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       151 P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      |.++..+.++|..++ ..|++++|+.+|++||+++|+++.++.++|.++.. .+++++|+.+|++|++++|++
T Consensus         1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~   71 (126)
T 3upv_A            1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNF   71 (126)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCc
Confidence            456788999999988 69999999999999999999999999999998876 578999999999999999986

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.12  E-value=3.2e-10  Score=81.18  Aligned_cols=69  Identities=12%  Similarity=0.008  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++.+++++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .+++++|+.+|+++++++|++
T Consensus         3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCc
Confidence            4678999999987 69999999999999999999999999999998876 579999999999999999985

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.12  E-value=4.7e-10  Score=93.31  Aligned_cols=88  Identities=20%  Similarity=0.054  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH----------
Q 027404          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEI--------RGDFVKAEEYCGRAILAKPGDGNVL----------  192 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n---a~~l~nlA~~l~e~--------~Gd~eeAe~~~erAL~ldP~da~al----------  192 (224)
                      +++++|+.+|+++|+.+|++   +.+++.+|.++. .        +|++++|+.+|+++++..|++..+.          
T Consensus        66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~  144 (261)
T 3qky_A           66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR  144 (261)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence            68999999999999998865   578999999886 7        8999999999999999999987666          


Q ss_pred             -------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          193 -------SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       193 -------~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                             ..+|.++.. .|++++|+.+|+++++..|++
T Consensus       145 ~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          145 AKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCC
Confidence                   777888765 689999999999999999974

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.11  E-value=2.4e-10  Score=102.63  Aligned_cols=87  Identities=20%  Similarity=0.169  Sum_probs=76.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.+++++|.++. .+|++++|+++|+++++++|+++.++..+|.++.. .|++++|+..|
T Consensus        39 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  116 (537)
T 3fp2_A           39 KNFNEAIKYYQYAIELDPNEPVFYSNISACYI-STGDLEKVIEFTTKALEIKPDHSKALLRRASANES-LGNFTDAMFDL  116 (537)
T ss_dssp             TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            67899999999999999999999999999987 69999999999999999999999999999998876 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      + ++.++|+.
T Consensus       117 ~-~~~~~~~~  125 (537)
T 3fp2_A          117 S-VLSLNGDF  125 (537)
T ss_dssp             H-HHC-----
T ss_pred             H-HHhcCCCC
Confidence            5 88888763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.10  E-value=1.1e-09  Score=94.73  Aligned_cols=89  Identities=8%  Similarity=-0.115  Sum_probs=76.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLK-EIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~-e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      +++++|+.+|+++++.+|++..+....+++.. ...|++++|+.+|+++++..|+++.++.++|.++.. .|++++|+.+
T Consensus       144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~eA~~~  222 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRWEAAEGV  222 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            79999999999999999999765554443221 135899999999999999999999999999988766 5899999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++|++++|++
T Consensus       223 l~~al~~~p~~  233 (291)
T 3mkr_A          223 LQEALDKDSGH  233 (291)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHHhCCCC
Confidence            99999999986

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=1.1e-09  Score=97.30  Aligned_cols=89  Identities=15%  Similarity=0.127  Sum_probs=73.4

Q ss_pred             CCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA---------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYG  196 (224)
Q Consensus       134 ~d~e~A~~~yerALe~---------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--------dP~da~al~~lG  196 (224)
                      |++++|+.+|++|+++         +|....++.|+|.+++ .+|++++|+.+|++|+++        .+..+.++.++|
T Consensus        65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g  143 (472)
T 4g1t_A           65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG  143 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence            6889999999999987         7778889999999887 689999999999999886        345678888888


Q ss_pred             HHHHHHc-CChHHHHHHHHHHHHhCCCC
Q 027404          197 DLIWINH-KDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       197 ~ll~~~~-gd~eeA~~~ferAL~l~P~d  223 (224)
                      .++.... +++++|+.+|++|++++|++
T Consensus       144 ~~~~~~~~~~y~~A~~~~~kal~~~p~~  171 (472)
T 4g1t_A          144 WTRLKCGGNQNERAKVCFEKALEKKPKN  171 (472)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence            7665543 46889999999999999875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.09  E-value=9.4e-10  Score=100.49  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHHH------CCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCh
Q 027404          134 KESESMDVYYQEMIKA------YPED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDA  206 (224)
Q Consensus       134 ~d~e~A~~~yerALe~------dP~n-a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~  206 (224)
                      +++++|+.+|+++++.      +|++ +.++.+++.++. ..|++++|+++|+++++++|+++.+|..++.++.. .|++
T Consensus       489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~  566 (597)
T 2xpi_A          489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR-KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH-KKIP  566 (597)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH-TTCH
T ss_pred             CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hCCH
Confidence            7899999999999999      7775 789999999987 69999999999999999999999999999998866 6899


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027404          207 PRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       207 eeA~~~ferAL~l~P~d  223 (224)
                      ++|+.+|+++++++|++
T Consensus       567 ~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          567 GLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999999999999986

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.09  E-value=8.2e-10  Score=99.09  Aligned_cols=88  Identities=15%  Similarity=0.206  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++.++|+++.++..+|.++.. .|++++|+.+|
T Consensus       290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  367 (537)
T 3fp2_A          290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFTESEAFF  367 (537)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            67788888888888888888888888888776 58888888888888888888888888888877655 56788888888


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       368 ~~~~~~~~~~  377 (537)
T 3fp2_A          368 NETKLKFPTL  377 (537)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHhCCCC
Confidence            8888888865

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.08  E-value=1.2e-09  Score=81.24  Aligned_cols=74  Identities=16%  Similarity=0.074  Sum_probs=66.9

Q ss_pred             HHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          148 KAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       148 e~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ..+|.++..++.+|.++. ..|++++|+.+|++++.++|+++.++.++|.++.. .+++++|+.+|+++++++|++
T Consensus         3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchh
Confidence            467889999999999988 69999999999999999999999999999998876 579999999999999999975

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.08  E-value=2.2e-10  Score=98.23  Aligned_cols=88  Identities=15%  Similarity=0.168  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-------VLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~-------al~~lG~ll~  200 (224)
                      +++++|+.+|++|+++.|.+      +.++.++|.++. .+|++++|+.+|++++++.|++..       ++.++|.++.
T Consensus       132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  210 (292)
T 1qqe_A          132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA-LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL  210 (292)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence            68999999999999998865      578999999987 699999999999999999998754       5677888776


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCC
Q 027404          201 INHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       201 ~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      . .|++++|+.+|+++++++|+.
T Consensus       211 ~-~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          211 A-ATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             H-TTCHHHHHHHHHGGGCC----
T ss_pred             H-cCCHHHHHHHHHHHHhhCCCC
Confidence            5 589999999999999999964

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.08  E-value=3.3e-10  Score=80.07  Aligned_cols=72  Identities=11%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          149 AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       149 ~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      ++|+++.+++.+|.++. ..|++++|+.+|+++++++|++..++..+|.++.. .+++++|+.+|+++++++|+
T Consensus         1 l~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcc
Confidence            37999999999999987 69999999999999999999999999999998766 57899999999999999997

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.08  E-value=4e-10  Score=96.63  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIR-GDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~-Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~  200 (224)
                      +++++|+.+|++||++.|..      +.++.++|.++. .+ |++++|+.+|++|+++.|.+      +.++.++|.++.
T Consensus        91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~  169 (292)
T 1qqe_A           91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA  169 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            68999999999999988754      468889998876 55 99999999999999998865      567888998876


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCC
Q 027404          201 INHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       201 ~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      . .|++++|+.+|++++++.|++
T Consensus       170 ~-~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          170 L-DGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             H-TTCHHHHHHHHHHHHHTTSSC
T ss_pred             H-hCCHHHHHHHHHHHHHHHhcC
Confidence            6 578999999999999998864

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.07  E-value=7.5e-11  Score=104.45  Aligned_cols=89  Identities=11%  Similarity=0.030  Sum_probs=47.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++||+++|+++.+++++|.++. .+|++++|+.+|++|++++|++..++..++.+.....+..++|..+|
T Consensus       244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~  322 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY  322 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC------------------------------
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999987 69999999999999999999999999999887655567789999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++++..+|++
T Consensus       323 ~~~l~~~p~~  332 (338)
T 2if4_A          323 KGIFKGKDEG  332 (338)
T ss_dssp             ----------
T ss_pred             HHhhCCCCCC
Confidence            9999999975

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.07  E-value=8.5e-10  Score=81.76  Aligned_cols=72  Identities=17%  Similarity=0.039  Sum_probs=65.6

Q ss_pred             CCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          150 YPEDALVLANYAKFLKEIRGD---FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       150 dP~na~~l~nlA~~l~e~~Gd---~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +|++++++..||.+++ ..++   .++|+.+|++|++++|+++.++..+|.+++. .|+|++|+.+|+++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~-~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLY-YLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHH-HTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            7999999999999997 4555   6899999999999999999999999998876 689999999999999999973

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.06  E-value=7.7e-10  Score=86.12  Aligned_cols=72  Identities=15%  Similarity=0.067  Sum_probs=66.4

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       150 dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++.++.+++.+|.+++ ..|++++|+.+|++||+++|+++.+|.++|.+++. .+++++|+.+|++|++++|++
T Consensus         7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~   78 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKY   78 (164)
T ss_dssp             CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            5667889999999988 69999999999999999999999999999998876 579999999999999999986

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.05  E-value=1.2e-09  Score=96.38  Aligned_cols=83  Identities=7%  Similarity=-0.021  Sum_probs=75.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH-HHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA-KSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA-~~~  212 (224)
                      +++++|+.+|++||+++|+++.+++++|.++. ..|++++|+.+|++|++++|++..++..++.++..+ +++++| ...
T Consensus       210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~-~~~~~a~~~~  287 (336)
T 1p5q_A          210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI-RRQLAREKKL  287 (336)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            79999999999999999999999999999987 699999999999999999999999999999887664 578888 557


Q ss_pred             HHHHHH
Q 027404          213 FDRAVH  218 (224)
Q Consensus       213 ferAL~  218 (224)
                      |++++.
T Consensus       288 ~~~~~~  293 (336)
T 1p5q_A          288 YANMFE  293 (336)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777664

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.02  E-value=2.4e-09  Score=97.72  Aligned_cols=87  Identities=13%  Similarity=0.054  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|..+|+++++.+|.+..+|..++.++. ..|++++|+++|+++++..|++..++..++.++.. .|++++|+.+|
T Consensus       387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  464 (597)
T 2xpi_A          387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNILLANEYL  464 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            45555555555555555555555555555544 35555555555555555555555555555554433 34555555555


Q ss_pred             HHHHHhCCC
Q 027404          214 DRAVHSAPD  222 (224)
Q Consensus       214 erAL~l~P~  222 (224)
                      +++++++|+
T Consensus       465 ~~~~~~~~~  473 (597)
T 2xpi_A          465 QSSYALFQY  473 (597)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHhCCC
Confidence            555555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.00  E-value=1.1e-09  Score=98.16  Aligned_cols=88  Identities=16%  Similarity=0.200  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCC
Q 027404          134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEI-----RGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKD  205 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~--na~~l~nlA~~l~e~-----~Gd~eeAe~~~erAL~ldP~d-a~al~~lG~ll~~~~gd  205 (224)
                      .....|...++|||++||+  +..+|..+|.++. .     -|+.++|+++|+|||+++|+. ..++..||..++...++
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~-~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYA-AAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-HSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH-hCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            4778999999999999999  6779999998876 4     399999999999999999975 99999999988775689


Q ss_pred             hHHHHHHHHHHHHhCCC
Q 027404          206 APRAKSYFDRAVHSAPD  222 (224)
Q Consensus       206 ~eeA~~~ferAL~l~P~  222 (224)
                      +++|..++++|++++|.
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999886

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.00  E-value=1.3e-09  Score=93.62  Aligned_cols=82  Identities=16%  Similarity=0.116  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD--GNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d--a~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      .++|+..|++|++.+|+++.+++++|.++. ..|++++|+.+|+++++.+|++  +.++.+++.++.. .|+.++|+..|
T Consensus       201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~-~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~-~g~~~~a~~~~  278 (287)
T 3qou_A          201 DTPEIQQLQQQVAENPEDAALATQLALQLH-QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA-LGTGDALASXY  278 (287)
T ss_dssp             SCHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH-HCTTCHHHHHH
T ss_pred             cCccHHHHHHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH-cCCCCcHHHHH
Confidence            345778889999999999999999999987 6999999999999999999999  8899999988755 57899999999


Q ss_pred             HHHHHh
Q 027404          214 DRAVHS  219 (224)
Q Consensus       214 erAL~l  219 (224)
                      ++++..
T Consensus       279 r~al~~  284 (287)
T 3qou_A          279 RRQLYA  284 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999863

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.99  E-value=1.1e-09  Score=97.16  Aligned_cols=88  Identities=15%  Similarity=0.106  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027404          134 KESESMDVYYQEMIKAYPEDAL------VLANYAKFLKEI---RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK  204 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~------~l~nlA~~l~e~---~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g  204 (224)
                      +++++|+.+|+++++.+|.++.      ++.++|.++. .   .|++++|+.+|++++.++|+++.++..+|.++.. .|
T Consensus       386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g  463 (514)
T 2gw1_A          386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ-QE  463 (514)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hc
Confidence            6889999999999999888855      8899998876 6   8999999999999999999999999999988765 58


Q ss_pred             ChHHHHHHHHHHHHhCCCC
Q 027404          205 DAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       205 d~eeA~~~ferAL~l~P~d  223 (224)
                      ++++|+.+|+++++++|++
T Consensus       464 ~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          464 DIDEAITLFEESADLARTM  482 (514)
T ss_dssp             CHHHHHHHHHHHHHHCSSH
T ss_pred             CHHHHHHHHHHHHHhcccc
Confidence            9999999999999999974

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.98  E-value=3.5e-09  Score=79.97  Aligned_cols=66  Identities=11%  Similarity=-0.041  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .++.+|..+. ..|++++|+.+|++|++++|+++.+|..+|.++.. .|++++|+.+|++|++++|++
T Consensus        19 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           19 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence            4677888887 69999999999999999999999999999998865 689999999999999999986

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.97  E-value=2.6e-10  Score=105.97  Aligned_cols=88  Identities=15%  Similarity=-0.038  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL--IWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l--l~~~~gd~eeA~~  211 (224)
                      +++++|+.+|++|++++|+++.+++++|.++. .+|++++|+++|++|++++|++..++..++.+  +.. .+++++|++
T Consensus        54 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~g~~~~A~~  131 (477)
T 1wao_1           54 ECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-QKAFERAIA  131 (477)
T ss_dssp             TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH-HHHHCCC--
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence            68999999999999999999999999999987 69999999999999999999999999999877  544 468999999


Q ss_pred             HHH-----------HHHHhCCCC
Q 027404          212 YFD-----------RAVHSAPDD  223 (224)
Q Consensus       212 ~fe-----------rAL~l~P~d  223 (224)
                      +++           ++++++|++
T Consensus       132 ~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          132 GDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             ----CCSTTTCCTTSSCCCCTTC
T ss_pred             cccccchhHhhhhhhhccccccc
Confidence            999           888887764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.97  E-value=9.6e-10  Score=89.27  Aligned_cols=85  Identities=15%  Similarity=0.180  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~--------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--------dP~da~al~~lG~  197 (224)
                      +++++|+.+|++|++.        +|....++.++|.++. ..|++++|+.+|++++++        +|....++..+|.
T Consensus        99 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  177 (283)
T 3edt_B           99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS  177 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            7899999999999998        5777899999999987 699999999999999999        7778889999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhC
Q 027404          198 LIWINHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l~  220 (224)
                      ++.. .|++++|+.+|++++++.
T Consensus       178 ~~~~-~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          178 CYLK-QGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHHH
Confidence            8876 578999999999999873

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.96  E-value=1.5e-09  Score=89.77  Aligned_cols=87  Identities=22%  Similarity=0.255  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------
Q 027404          134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA---------------------  184 (224)
Q Consensus       134 ~d~e~A~~~yerALe~--------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l---------------------  184 (224)
                      +++++|+.+|+++++.        +|..+.++.++|.++. ..|++++|+.+|++++++                     
T Consensus       167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  245 (311)
T 3nf1_A          167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL-KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE  245 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence            7899999999999999        7878889999999987 699999999999999984                     


Q ss_pred             ----------------------------CCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          185 ----------------------------KPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       185 ----------------------------dP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                                                  +|.++.++..+|.++.. .|++++|+.+|++|+++.|.
T Consensus       246 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          246 EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR-QGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhhc
Confidence                                        46677889999988876 57899999999999999886

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.94  E-value=3.5e-09  Score=94.10  Aligned_cols=88  Identities=14%  Similarity=0.049  Sum_probs=77.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCChHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~---al~~lG~ll~~~~gd~eeA~~  211 (224)
                      .+++|..+|++|++.+|.++.++.++|.++. ..|++++|+.+|++||.++|++..   ++..+|.++....+++++|+.
T Consensus       315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~  393 (472)
T 4g1t_A          315 LIGHAVAHLKKADEANDNLFRVCSILASLHA-LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH  393 (472)
T ss_dssp             HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH-HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             hHHHHHHHHHHHhhcCCchhhhhhhHHHHHH-HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            4678999999999999999999999999887 699999999999999999998765   356677766656789999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      +|++|++++|++
T Consensus       394 ~y~kal~i~~~~  405 (472)
T 4g1t_A          394 HFIEGVKINQKS  405 (472)
T ss_dssp             HHHHHHHSCCCC
T ss_pred             HHHHHHhcCccc
Confidence            999999998864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.92  E-value=2.2e-09  Score=87.15  Aligned_cols=84  Identities=23%  Similarity=0.304  Sum_probs=75.3

Q ss_pred             CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~--------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--------dP~da~al~~lG~  197 (224)
                      +++++|+.+|++|++.        +|..+.++.++|.++. .+|++++|+.+|++|+.+        +|....++.++|.
T Consensus        57 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  135 (283)
T 3edt_B           57 NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL  135 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            6899999999999988        4666789999999987 699999999999999998        5777888999998


Q ss_pred             HHHHHcCChHHHHHHHHHHHHh
Q 027404          198 LIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      ++.. .+++++|+.+|++++++
T Consensus       136 ~~~~-~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          136 LCQN-QGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHT-TTCHHHHHHHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHH
Confidence            8765 58999999999999988

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.92  E-value=8.2e-09  Score=73.32  Aligned_cols=64  Identities=19%  Similarity=0.199  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          158 ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       158 ~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~-al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++.|..+. ..|++++|+++|+++++.+|+++. ++..+|.++.. .+++++|+.+|+++++++|++
T Consensus         4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc
Confidence            56677776 689999999999999999999999 99999998876 578999999999999999986

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.92  E-value=7.6e-09  Score=75.33  Aligned_cols=69  Identities=16%  Similarity=0.019  Sum_probs=64.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN  202 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~  202 (224)
                      .+++++|+.+|+++++.+|.++.+++++|.++. ..|++++|+++|++++.++|++..++..++.++...
T Consensus        63 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALE-AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            378999999999999999999999999999987 699999999999999999999999999999887653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.91  E-value=4.8e-09  Score=84.02  Aligned_cols=83  Identities=14%  Similarity=0.045  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHH-HH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK-SY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~-~~  212 (224)
                      +++++|+.+|++|++++|+++.+++++|.++. ..|++++|+.+|++|++++|++..++..++.++... ++.+++. ..
T Consensus       102 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~~~~~~  179 (198)
T 2fbn_A          102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL-KEARKKDKLT  179 (198)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-HHHHC-----
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            68999999999999999999999999999987 699999999999999999999999999999887654 4566666 44


Q ss_pred             HHHHHH
Q 027404          213 FDRAVH  218 (224)
Q Consensus       213 ferAL~  218 (224)
                      |.+.+.
T Consensus       180 ~~~~f~  185 (198)
T 2fbn_A          180 FGGMFD  185 (198)
T ss_dssp             ------
T ss_pred             HHHHhc
Confidence            444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.91  E-value=5.7e-09  Score=85.68  Aligned_cols=87  Identities=13%  Similarity=0.048  Sum_probs=69.6

Q ss_pred             CCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 027404          133 GKESESMDVYYQEMIKAYP--EDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK--  204 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP--~na~~l~nlA~~l~e~----~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g--  204 (224)
                      .+++++|+.+|++|++.+|  +++.+++++|.++. .    .+++++|+.+|++|+++ |.++.++.++|.++....+  
T Consensus       102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~  179 (212)
T 3rjv_A          102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA-SGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGF  179 (212)
T ss_dssp             SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH-HTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTT
T ss_pred             ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCC
Confidence            3688899999999988888  45888889988776 5    66888999999999888 6777888888887765333  


Q ss_pred             ---ChHHHHHHHHHHHHhCC
Q 027404          205 ---DAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       205 ---d~eeA~~~ferAL~l~P  221 (224)
                         ++++|+.+|++|++...
T Consensus       180 ~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          180 IEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             BCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHcCC
Confidence               78899999998887643

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.90  E-value=7.7e-09  Score=84.94  Aligned_cols=89  Identities=10%  Similarity=0.199  Sum_probs=78.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVL-----------------ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVL  192 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l-----------------~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da---~al  192 (224)
                      .+++++|+.+|+++|+.+|+++.++                 ..+|.++. .+|++++|+.+|+++|+..|+++   .++
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  187 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT-ERGAWVAVVNRVEGMLRDYPDTQATRDAL  187 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHCcCCCccHHHH
Confidence            4689999999999999999998654                 56787777 69999999999999999999986   678


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          193 SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       193 ~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ..+|.++.. .|++++|+.+|++++...|++
T Consensus       188 ~~l~~~~~~-~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          188 PLMENAYRQ-MQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHH-cCCcHHHHHHHHHHHhhCCCc
Confidence            899988766 589999999999999998875

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.90  E-value=1.8e-08  Score=72.53  Aligned_cols=68  Identities=13%  Similarity=-0.008  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN  202 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~  202 (224)
                      +++++|+.+|+++++.+|+++.+++.+|.++. ..|++++|+.+|++++.++|++..++..++.++...
T Consensus        60 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALS-SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHhcCccCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            68999999999999999999999999999987 699999999999999999999999999999887654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.88  E-value=5.1e-09  Score=90.28  Aligned_cols=87  Identities=11%  Similarity=0.018  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~  201 (224)
                      +++++|+.+|++|+++.|..      +.++.++|.++. .+|++++|+.+|++|+.+.|.+      ..++..++.++..
T Consensus       129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~  207 (307)
T 2ifu_A          129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH  207 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence            78999999999999988764      578899999887 6999999999999999987654      2356666766544


Q ss_pred             HcCChHHHHHHHHHHHHhCCCC
Q 027404          202 NHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~P~d  223 (224)
                       .+++++|+.+|++++ ++|+.
T Consensus       208 -~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          208 -RADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             -TTCHHHHHHHHHHHT-TSTTS
T ss_pred             -cCCHHHHHHHHHHHh-CCCCC
Confidence             578999999999999 99864

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.88  E-value=2.5e-08  Score=82.88  Aligned_cols=82  Identities=15%  Similarity=0.115  Sum_probs=41.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCh
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDA  206 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~----~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~  206 (224)
                      +++++|+.+|++|++.+  ++.+++++|.++. .    .+++++|+.+|++|++.  +++.++.++|.++...   .+++
T Consensus        56 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~  130 (273)
T 1ouv_A           56 KNLKKAASFYAKACDLN--YSNGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDF  130 (273)
T ss_dssp             CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred             CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCH
Confidence            45555555555555543  4555555555443 4    45555555555555554  2455555555444320   3455


Q ss_pred             HHHHHHHHHHHHhC
Q 027404          207 PRAKSYFDRAVHSA  220 (224)
Q Consensus       207 eeA~~~ferAL~l~  220 (224)
                      ++|+.+|++|++++
T Consensus       131 ~~A~~~~~~a~~~~  144 (273)
T 1ouv_A          131 KKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcC
Confidence            55555555555543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.87  E-value=1.1e-08  Score=83.35  Aligned_cols=88  Identities=13%  Similarity=0.054  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCChHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG---DFVKAEEYCGRAILAK-P-GDGNVLSMYGDLIWINHKDAPR  208 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G---d~eeAe~~~erAL~ld-P-~da~al~~lG~ll~~~~gd~ee  208 (224)
                      .....+++.|+++++.+|.+.++.++||+++. ...   ++++|+.+|+.+++.+ | ++.+.++++|..++. .++|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv-~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHH
Confidence            46778999999999999999999999999997 466   6779999999999999 7 678899999988865 689999


Q ss_pred             HHHHHHHHHHhCCCC
Q 027404          209 AKSYFDRAVHSAPDD  223 (224)
Q Consensus       209 A~~~ferAL~l~P~d  223 (224)
                      |..+++++++++|++
T Consensus        90 A~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999999999986

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.86  E-value=2.7e-09  Score=82.84  Aligned_cols=65  Identities=15%  Similarity=0.016  Sum_probs=59.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-NVLSMYGDLI  199 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da-~al~~lG~ll  199 (224)
                      +++++|+.+|++||+++|+++.+++.+|.++. ..|++++|+.+|++|+.++|+++ .+...++.+.
T Consensus        77 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           77 GDLHEAEETSSEVLKREETNEKALFRRAKARI-AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999 5666666554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.86  E-value=3e-08  Score=70.72  Aligned_cols=67  Identities=21%  Similarity=0.298  Sum_probs=62.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~  201 (224)
                      +++++|+.+|+++++.+|.++.++.++|.++. ..|++++|+.+|++++.++|+++.++..++.++..
T Consensus        57 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           57 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            68999999999999999999999999999987 69999999999999999999999999999887654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.86  E-value=9e-09  Score=84.89  Aligned_cols=87  Identities=13%  Similarity=0.187  Sum_probs=76.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILA------KPGDGNVLSMYGDLIWIN  202 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l------dP~da~al~~lG~ll~~~  202 (224)
                      .+++++|+.+|++|++.+|+++    .++..+|.++. ..|++++|+.+|++|+.+      .|..+.++..+|.++.. 
T Consensus        18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-   95 (338)
T 3ro2_A           18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-   95 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-
T ss_pred             hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-
Confidence            3789999999999999999994    68889999887 699999999999999987      55567788899988765 


Q ss_pred             cCChHHHHHHHHHHHHhCC
Q 027404          203 HKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       203 ~gd~eeA~~~ferAL~l~P  221 (224)
                      .+++++|+.+|++++++.|
T Consensus        96 ~g~~~~A~~~~~~al~~~~  114 (338)
T 3ro2_A           96 LGNFDEAIVCCQRHLDISR  114 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHH
Confidence            5899999999999998754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.86  E-value=6.8e-09  Score=85.03  Aligned_cols=60  Identities=12%  Similarity=0.117  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR-----------GDFVKAEEYCGRAILAKPGDGNVLSMY  195 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~-----------Gd~eeAe~~~erAL~ldP~da~al~~l  195 (224)
                      .+++|+..|++||+++|+++.+|+++|.++. .+           |++++|+++|++||+++|++...+..+
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~-~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al  131 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYT-SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4789999999999999999999999999987 45           489999999999999999997665543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.85  E-value=1.4e-08  Score=75.16  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY  195 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~l  195 (224)
                      +++++|+.+|++|++.+|+++.+++++|.++. ..|++++|+.+|+++++.+|+++.+....
T Consensus        41 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           41 GEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            78999999999999999999999999999987 69999999999999999999998876543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.85  E-value=4.1e-09  Score=89.79  Aligned_cols=85  Identities=14%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHH---C----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA---Y----PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerALe~---d----P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~  200 (224)
                      +++++|+.+|++|++.   .    +..+.+++++|.++. .+|++++|+.+|++|+++.+..      +.++.++|.++.
T Consensus       169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~  247 (293)
T 3u3w_A          169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR  247 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            6899999999999953   2    222468899999987 6999999999999999987654      788999999887


Q ss_pred             HHcCChHHHHHHHHHHHHh
Q 027404          201 INHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       201 ~~~gd~eeA~~~ferAL~l  219 (224)
                      .++.++++|+.+|++|+.+
T Consensus       248 ~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          248 KLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HTTCCHHHHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHH
Confidence            7543579999999999976

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.85  E-value=1.3e-08  Score=88.57  Aligned_cols=84  Identities=17%  Similarity=0.231  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHc
Q 027404          134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILA------KPGDGNVLSMYGDLIWINH  203 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l------dP~da~al~~lG~ll~~~~  203 (224)
                      +++++|+.+|++|++++|+++    .+++++|.++. ..|++++|+.+|++|+++      +|..+.++..+|.++.. .
T Consensus        62 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~  139 (411)
T 4a1s_A           62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV-M  139 (411)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-C
Confidence            799999999999999999997    58899999887 699999999999999998      67788899999988765 5


Q ss_pred             CChHHHHHHHHHHHHh
Q 027404          204 KDAPRAKSYFDRAVHS  219 (224)
Q Consensus       204 gd~eeA~~~ferAL~l  219 (224)
                      |++++|+.+|++++++
T Consensus       140 g~~~~A~~~~~~al~~  155 (411)
T 4a1s_A          140 GRFDEAAICCERHLTL  155 (411)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            8999999999999987

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.84  E-value=4e-08  Score=81.65  Aligned_cols=82  Identities=24%  Similarity=0.260  Sum_probs=46.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCC
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI---NHKD  205 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~----~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~---~~gd  205 (224)
                      .+++++|+.+|++|++.+  ++.+++++|.++. .    .+++++|+.+|++|++.+  ++.++.++|.++..   ..++
T Consensus        91 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~  165 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDLK--YAEGCASLGGIYH-DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD  165 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred             ccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC
Confidence            355666666666666552  5666666665554 4    566666666666666554  45555556655433   0345


Q ss_pred             hHHHHHHHHHHHHh
Q 027404          206 APRAKSYFDRAVHS  219 (224)
Q Consensus       206 ~eeA~~~ferAL~l  219 (224)
                      +++|+.+|++|+++
T Consensus       166 ~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          166 LKKALASYDKACDL  179 (273)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            66666666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.84  E-value=8.4e-09  Score=76.40  Aligned_cols=85  Identities=15%  Similarity=0.152  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~  201 (224)
                      +++++|+.+|++|++..+...      .++.++|.++. ..|++++|+.+|++|+++.+..      +.++.++|.++..
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (164)
T 3ro3_A           23 GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  101 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            688999999999998765432      47888888887 6899999999999999876543      5567788877765


Q ss_pred             HcCChHHHHHHHHHHHHhC
Q 027404          202 NHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~  220 (224)
                       .+++++|+.+|++++++.
T Consensus       102 -~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A          102 -LQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             -TTCHHHHHHHHHHHHHHH
T ss_pred             -HhhHHHHHHHHHHHHHHH
Confidence             578999999999988763

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.84  E-value=3.6e-08  Score=83.89  Aligned_cols=86  Identities=8%  Similarity=0.051  Sum_probs=73.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAI---LAKPGDG----NVLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL---~ldP~da----~al~~lG~ll~  200 (224)
                      +++++|+.+|++|++..+..      +.+++++|.++. .+|++++|+.+|++|+   +..|++.    .++.++|.++.
T Consensus       129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 2qfc_A          129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence            68999999999999876554      578999999987 6999999999999999   5667653    58889999887


Q ss_pred             HHcCChHHHHHHHHHHHHhCC
Q 027404          201 INHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       201 ~~~gd~eeA~~~ferAL~l~P  221 (224)
                      . .+++++|+.+|++|+++.+
T Consensus       208 ~-~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          208 L-DSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHH
T ss_pred             H-HhhHHHHHHHHHHHHHHHH
Confidence            6 5899999999999998753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=2.1e-08  Score=74.51  Aligned_cols=75  Identities=13%  Similarity=-0.001  Sum_probs=67.9

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          147 IKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       147 Le~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d---a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +..+|.++..++.+|..+. ..|++++|+.+|+++++.+|++   ..++..+|.++.. .+++++|+.+|+++++++|++
T Consensus        21 ~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCC
T ss_pred             CccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccC
Confidence            4567889999999999887 6999999999999999999998   8899999988766 579999999999999999975

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.82  E-value=1.7e-08  Score=92.91  Aligned_cols=86  Identities=16%  Similarity=0.185  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 027404          137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEI------RGDFV-------KAEEYCGRAIL-AKPGDGNVLSMYGDLIWIN  202 (224)
Q Consensus       137 e~A~~~yerALe~dP~na~~l~nlA~~l~e~------~Gd~e-------eAe~~~erAL~-ldP~da~al~~lG~ll~~~  202 (224)
                      ++|...|++||..+|+++.+|++||.++...      .|+++       +|+.+|++|++ ++|++..+|..++.++.. 
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  333 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            4778889999999999999999998877521      58876       88999999997 788888888888877654 


Q ss_pred             cCChHHHHHHHHHHHHhCCCC
Q 027404          203 HKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       203 ~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .|++++|...|++|++++|++
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~  354 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDID  354 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSC
T ss_pred             cCCHHHHHHHHHHHhCccccC
Confidence            578899999999999888864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.82  E-value=1.4e-08  Score=87.19  Aligned_cols=86  Identities=13%  Similarity=0.188  Sum_probs=76.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHc
Q 027404          134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILA------KPGDGNVLSMYGDLIWINH  203 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l------dP~da~al~~lG~ll~~~~  203 (224)
                      +++++|+.+|++|++.+|.++    .++..+|.++. ..|++++|+.+|++|+.+      .|..+.++..+|.+++. .
T Consensus        23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~  100 (406)
T 3sf4_A           23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-L  100 (406)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-c
Confidence            789999999999999999995    68889999887 699999999999999987      45557788899988765 5


Q ss_pred             CChHHHHHHHHHHHHhCC
Q 027404          204 KDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       204 gd~eeA~~~ferAL~l~P  221 (224)
                      |++++|+.+|++|+++.|
T Consensus       101 g~~~~A~~~~~~al~~~~  118 (406)
T 3sf4_A          101 GNFDEAIVCCQRHLDISR  118 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            899999999999998765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.81  E-value=3.4e-08  Score=69.91  Aligned_cols=64  Identities=8%  Similarity=0.016  Sum_probs=60.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      +++++|+.+|+++++.+|.++.++.++|.++. ..|++++|+.+|+++++.+|+++.++..++.+
T Consensus        52 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           52 GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            68999999999999999999999999999987 69999999999999999999999999888765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.81  E-value=2e-08  Score=74.30  Aligned_cols=86  Identities=14%  Similarity=0.162  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG------DGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~------da~al~~lG~ll~~  201 (224)
                      +++++|+.+|++|++..+..      +.++.++|.++. ..|++++|+++|++++++.+.      .+.++..+|.+++.
T Consensus        63 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  141 (164)
T 3ro3_A           63 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA  141 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence            68999999999999986553      578899999887 699999999999999987432      24567788888766


Q ss_pred             HcCChHHHHHHHHHHHHhCC
Q 027404          202 NHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~P  221 (224)
                       .+++++|+.+|++++++..
T Consensus       142 -~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          142 -LGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             -HTCHHHHHHHHHHHHHHHT
T ss_pred             -ccCHHHHHHHHHHHHHHHH
Confidence             5789999999999998754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.80  E-value=1.1e-08  Score=80.18  Aligned_cols=84  Identities=10%  Similarity=0.096  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIK------AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA---KPGD----GNVLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerALe------~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l---dP~d----a~al~~lG~ll~  200 (224)
                      +++++|+.+|++|++      ..|..+.++.++|.++. ..|++++|+.+|++|+.+   .+++    +.++.++|.+++
T Consensus        40 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  118 (203)
T 3gw4_A           40 DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL  118 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence            688888888888888      44555678888888876 688888899988888887   4433    456777887776


Q ss_pred             HHcCChHHHHHHHHHHHHh
Q 027404          201 INHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       201 ~~~gd~eeA~~~ferAL~l  219 (224)
                      . .|++++|+.+|++++++
T Consensus       119 ~-~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A          119 H-FGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             H-HTCHHHHHHHHHHHHHH
T ss_pred             H-hCCHHHHHHHHHHHHHH
Confidence            5 46888888888888865

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.80  E-value=2.4e-08  Score=92.94  Aligned_cols=84  Identities=11%  Similarity=0.018  Sum_probs=72.1

Q ss_pred             CCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHH
Q 027404          134 KESESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDGN---VLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~-----dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-----dP~da~---al~~lG~  197 (224)
                      +++++|+.+|+++|++     .|+|+   .++.|+|.++. .+|++++|+.+|++||++     .|+|+.   .++++|.
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            6899999999999985     67776   56779999887 699999999999999975     566666   4778998


Q ss_pred             HHHHHcCChHHHHHHHHHHHHh
Q 027404          198 LIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      +++. .|++++|+.+|++|+++
T Consensus       391 ~~~~-qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          391 LYMG-LENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHh-ccCHHHHHHHHHHHHHH
Confidence            8876 57999999999999986

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.80  E-value=1.8e-08  Score=92.67  Aligned_cols=88  Identities=17%  Similarity=0.162  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      +++++|...|++||+++|.++ .+|.+++.++. .+|++++|+++|++|++..|.+..++...+.+.+...|++++|..+
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence            466666666666666666664 46666655543 3344444444444444444333333332222211223444444444


Q ss_pred             HHHHHHhCCC
Q 027404          213 FDRAVHSAPD  222 (224)
Q Consensus       213 ferAL~l~P~  222 (224)
                      |++|++..|+
T Consensus       414 ~e~al~~~p~  423 (530)
T 2ooe_A          414 FELGLKKYGD  423 (530)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHCCC
Confidence            4444444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.79  E-value=1.9e-08  Score=82.48  Aligned_cols=84  Identities=12%  Similarity=0.035  Sum_probs=71.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH---c
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKP--GDGNVLSMYGDLIWIN---H  203 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~----~Gd~eeAe~~~erAL~ldP--~da~al~~lG~ll~~~---~  203 (224)
                      ..++++|+.+|++|+  +++++.+++++|.++. .    .+++++|+.+|++|++..|  +++.++.++|.++..-   .
T Consensus        66 ~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~  142 (212)
T 3rjv_A           66 QADYPQARQLAEKAV--EAGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP  142 (212)
T ss_dssp             SCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred             CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC
Confidence            358999999999995  4689999999998875 4    6799999999999999988  4589999999887651   3


Q ss_pred             CChHHHHHHHHHHHHh
Q 027404          204 KDAPRAKSYFDRAVHS  219 (224)
Q Consensus       204 gd~eeA~~~ferAL~l  219 (224)
                      +++++|+.+|++|+++
T Consensus       143 ~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          143 EDDVKASEYFKGSSSL  158 (212)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            5899999999999988

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.78  E-value=7.6e-09  Score=85.54  Aligned_cols=87  Identities=15%  Similarity=0.202  Sum_probs=76.5

Q ss_pred             CCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAY--------PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYG  196 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~d--------P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--------dP~da~al~~lG  196 (224)
                      .+++++|+.+|+++++..        |....++.++|.++. ..|++++|+++|++++++        +|....++..+|
T Consensus       124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  202 (311)
T 3nf1_A          124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA  202 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            378999999999999984        666788999999987 699999999999999998        777788899999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCC
Q 027404          197 DLIWINHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       197 ~ll~~~~gd~eeA~~~ferAL~l~P  221 (224)
                      .++.. .|++++|+.+|++++++.|
T Consensus       203 ~~~~~-~g~~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          203 SCYLK-QGKFKQAETLYKEILTRAH  226 (311)
T ss_dssp             HHHHH-HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-cCCHHHHHHHHHHHHHHHH
Confidence            98876 5789999999999998643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.78  E-value=1.5e-08  Score=73.08  Aligned_cols=69  Identities=13%  Similarity=0.148  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       152 ~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      ..+.+++.+|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. .+++++|+.+|++++.+.|+
T Consensus         2 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~   70 (131)
T 1elr_A            2 KQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRE   70 (131)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccc
Confidence            34678999999887 69999999999999999999999999999998876 57899999999999998774

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.78  E-value=1.4e-08  Score=93.38  Aligned_cols=76  Identities=8%  Similarity=-0.017  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +++++|+.+|++||+++|+++.+++++|.++. .+|++++|+.+|++|++++|++..++..++.++..+ +++++|..
T Consensus       331 g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~-~~~~~a~~  406 (457)
T 1kt0_A          331 REYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA-KEHNERDR  406 (457)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH-HHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence            79999999999999999999999999999987 699999999999999999999999999999887654 56776664

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.77  E-value=7.7e-09  Score=88.07  Aligned_cols=87  Identities=8%  Similarity=0.033  Sum_probs=71.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILA-------KPGDGNVLSMYGDLI  199 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-------dP~da~al~~lG~ll  199 (224)
                      .+++++|+.+|++|++..+..      ..++.++|.++. .+|++++|+.+|++|++.       .+..+.++.++|.++
T Consensus       128 ~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 3u3w_A          128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            368999999999999975543      347899999887 699999999999999952       223345788999988


Q ss_pred             HHHcCChHHHHHHHHHHHHhCC
Q 027404          200 WINHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       200 ~~~~gd~eeA~~~ferAL~l~P  221 (224)
                      .. .+++++|+.+|++|+++.+
T Consensus       207 ~~-~~~y~~A~~~~~~al~~~~  227 (293)
T 3u3w_A          207 YL-DSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HH-HhHHHHHHHHHHHHHHHHH
Confidence            76 5799999999999998764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.77  E-value=2.2e-08  Score=87.67  Aligned_cols=85  Identities=15%  Similarity=0.161  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAIL-----AK-PGDGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~-----ld-P~da~al~~lG~ll~~  201 (224)
                      +++++|+.+|++|+++.+...      .+++++|.++. .+|++++|+.+|++|++     .+ |..+.++.++|.++..
T Consensus       198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  276 (383)
T 3ulq_A          198 KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN-SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK  276 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            799999999999998865443      58999999987 69999999999999999     56 8889999999998876


Q ss_pred             HcCChHHHHHHHHHHHHhC
Q 027404          202 NHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~  220 (224)
                       .|++++|+.+|++|+++.
T Consensus       277 -~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          277 -LGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             -TTCHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHH
Confidence             578999999999999874

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.77  E-value=1.4e-07  Score=73.00  Aligned_cols=82  Identities=16%  Similarity=0.180  Sum_probs=71.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCh
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDA  206 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~----~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~  206 (224)
                      ..+++|..+|++|++.  +++.+++++|.++. .    .+|+++|+++|++|++.  .++.++.++|.++..-   .+++
T Consensus        39 ~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~  113 (138)
T 1klx_A           39 INKQKLFQYLSKACEL--NSGNGCRFLGDFYE-NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE  113 (138)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCH
Confidence            4677899999999987  78999999999876 5    68999999999999987  7899999999887541   4789


Q ss_pred             HHHHHHHHHHHHhC
Q 027404          207 PRAKSYFDRAVHSA  220 (224)
Q Consensus       207 eeA~~~ferAL~l~  220 (224)
                      ++|+.+|++|.+..
T Consensus       114 ~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          114 KQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
Confidence            99999999999874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.76  E-value=3.5e-08  Score=84.63  Aligned_cols=71  Identities=17%  Similarity=0.087  Sum_probs=66.4

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       151 P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      |.++.+++++|..+. ..|++++|+.+|++|++++|+++.++.++|.++.. .+++++|+.+|++|++++|++
T Consensus         1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTC
T ss_pred             ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCC
Confidence            678899999999987 69999999999999999999999999999998876 579999999999999999986

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.76  E-value=4.9e-08  Score=83.07  Aligned_cols=84  Identities=13%  Similarity=0.090  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHHHH---HHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMI---KAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG------DGNVLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerAL---e~dP~na----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~------da~al~~lG~ll~  200 (224)
                      +++++|+.+|++|+   +..|++.    .+++++|.++. .+|++++|+.+|++|+++.++      -+.++.++|.++.
T Consensus       169 ~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~  247 (293)
T 2qfc_A          169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR  247 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH-HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            79999999999999   6677754    68999999987 699999999999999988653      2778899998876


Q ss_pred             HHcCChHHH-HHHHHHHHHh
Q 027404          201 INHKDAPRA-KSYFDRAVHS  219 (224)
Q Consensus       201 ~~~gd~eeA-~~~ferAL~l  219 (224)
                      . .|++++| ..+|++|+.+
T Consensus       248 ~-~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          248 K-LEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             H-TTCCHHHHHHHHHHHHHH
T ss_pred             H-cCCcHHHHHHHHHHHHHH
Confidence            5 5789999 8889999875

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.76  E-value=6.2e-09  Score=89.77  Aligned_cols=86  Identities=14%  Similarity=0.149  Sum_probs=70.3

Q ss_pred             CCHHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPE--D----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~--n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~  201 (224)
                      +++++|+.+|++|+++.+.  +    +.++.++|.++. . |++++|+.+|++|+++.|..      +.++.++|.++..
T Consensus        90 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  167 (307)
T 2ifu_A           90 QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR  167 (307)
T ss_dssp             TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence            5789999999999988432  2    467889998875 5 99999999999999987754      5678889988765


Q ss_pred             HcCChHHHHHHHHHHHHhCCC
Q 027404          202 NHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~P~  222 (224)
                       .|++++|+.+|++++++.|+
T Consensus       168 -~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          168 -QQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHHHH
Confidence             57899999999999987653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.74  E-value=3.4e-08  Score=80.89  Aligned_cols=68  Identities=19%  Similarity=0.198  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHh--
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-------DGN-----VLSMYGDLIWINHKDAPRAKSYFDRAVHS--  219 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~-------da~-----al~~lG~ll~~~~gd~eeA~~~ferAL~l--  219 (224)
                      +..+.+.|..+. ..|++++|+.+|++||+++|+       +..     +|.++|.++.. .|++++|+.+|++||++  
T Consensus        11 a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence            567888999887 699999999999999999999       444     99999998876 47999999999999999  


Q ss_pred             -----CCCC
Q 027404          220 -----APDD  223 (224)
Q Consensus       220 -----~P~d  223 (224)
                           +|++
T Consensus        89 ~~~e~~pd~   97 (159)
T 2hr2_A           89 RRGELNQDE   97 (159)
T ss_dssp             HHCCTTSTH
T ss_pred             ccccCCCch
Confidence                 9975

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.73  E-value=1.2e-07  Score=87.32  Aligned_cols=87  Identities=14%  Similarity=0.051  Sum_probs=72.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-------------------------------------------HHHcCC
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFL-------------------------------------------KEIRGD  170 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l-------------------------------------------~e~~Gd  170 (224)
                      .++.+|+.+|++||++||+++.++..++.++                                           ....|+
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd  292 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK  292 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence            5678999999999999999987777433322                                           113699


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       171 ~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      +++|+++++||+.++|+ ..+|..+|.++. ..|++++|++.|++|+.++|.
T Consensus       293 ~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~-~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          293 TDESYQAINTGIDLEMS-WLNYVLLGKVYE-MKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             HHHHHHHHHHHHHHCCC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHhcCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999975 677778887764 578999999999999999996

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.72  E-value=4.7e-08  Score=71.64  Aligned_cols=67  Identities=18%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da---~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .+++++|..+. ..|++++|+.+|+++++.+|+++   .++..+|.+++. .+++++|+.+|+++++.+|++
T Consensus         3 ~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            3 RTAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             CCHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCC
Confidence            45788888887 69999999999999999999998   799999998876 589999999999999999975

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.71  E-value=5.3e-08  Score=70.74  Aligned_cols=65  Identities=12%  Similarity=0.085  Sum_probs=55.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLI  199 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~--da~al~~lG~ll  199 (224)
                      +++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|++|++++|.  +..+...+..++
T Consensus        21 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l   87 (100)
T 3ma5_A           21 DNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK   87 (100)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence            78999999999999999999999999999987 699999999999999998774  444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.71  E-value=4.4e-08  Score=93.57  Aligned_cols=88  Identities=8%  Similarity=-0.044  Sum_probs=72.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH----------  203 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G-d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~----------  203 (224)
                      ++++|.+++.+||+.||.|..+|..-+.++. ..+ .+++|+++++++|+.+|.+..+|++.+.++..+.          
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~-~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~  202 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHH-HcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence            5788888888888888888888888888776 577 8888888888888888888888888887776531          


Q ss_pred             ---CChHHHHHHHHHHHHhCCCC
Q 027404          204 ---KDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       204 ---gd~eeA~~~ferAL~l~P~d  223 (224)
                         +.+++|++++++|+.++|+|
T Consensus       203 ~~~~~~~eel~~~~~ai~~~P~~  225 (567)
T 1dce_A          203 LPENVLLKELELVQNAFFTDPND  225 (567)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             ccHHHHHHHHHHHHHHHhhCCCC
Confidence               34788889999999988876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.71  E-value=2.4e-08  Score=89.96  Aligned_cols=76  Identities=12%  Similarity=-0.013  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +++++|+.+|++||+++|+++.+++++|.++. ..|++++|+.+|++|++++|++..++..++.++..+ +++++|..
T Consensus       287 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~-~~~~~a~k  362 (370)
T 1ihg_A          287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI-KAQKDKEK  362 (370)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence            79999999999999999999999999999987 699999999999999999999999999999877654 45666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.71  E-value=3.5e-08  Score=93.11  Aligned_cols=86  Identities=12%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             CCCCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHH
Q 027404          132 SGKESESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDGN---VLSMY  195 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~-----dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-----dP~da~---al~~l  195 (224)
                      .+|++++|+.+|+++|++     .|+|+   .++.|+|.++. .+|++++|+.+|++||++     .|+|+.   .++++
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            458999999999999986     56665   67889999887 699999999999999975     667766   47789


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHh
Q 027404          196 GDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       196 G~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      |.+++. .|++++|+.+|++|+++
T Consensus       400 a~~~~~-~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          400 GLTNWH-AGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-CCCHHHHHHHHHHHHHH
Confidence            988876 58999999999999985

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.70  E-value=4.4e-08  Score=85.98  Aligned_cols=87  Identities=15%  Similarity=0.017  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHHHHCC--C----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYP--E----DALVLANYAKFLKEIRGDFVKAEEYCGRAIL-----AKPGDGNVLSMYGDLIWIN  202 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP--~----na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~-----ldP~da~al~~lG~ll~~~  202 (224)
                      +++++|+.+|++|+++.+  +    .+.++.++|.++. .+|++++|+.+|++|+.     .+|..+.++.++|.++.. 
T Consensus       196 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-  273 (378)
T 3q15_A          196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK-  273 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-
Confidence            799999999999999743  1    2468899999987 69999999999999999     888889999999998876 


Q ss_pred             cCChHHHHHHHHHHHHhCCC
Q 027404          203 HKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       203 ~gd~eeA~~~ferAL~l~P~  222 (224)
                      .|++++|+.+|++|+++.+.
T Consensus       274 ~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          274 AGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHCCT
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            57999999999999998653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.68  E-value=4.5e-08  Score=80.64  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~  201 (224)
                      +++++|+.+|+++++..+..      +.++.++|.++. .+|++++|+.+|++|+.+.+..      ..++..+|.++..
T Consensus       237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  315 (338)
T 3ro2_A          237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA  315 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            57888999999988887665      678888888876 6889999999999988875543      4467778877765


Q ss_pred             HcCChHHHHHHHHHHHHhCCC
Q 027404          202 NHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~P~  222 (224)
                       .|++++|+.+|++|+++.+.
T Consensus       316 -~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          316 -LGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             -HTCHHHHHHHHHHHHHC---
T ss_pred             -cCChHHHHHHHHHHHHHHHh
Confidence             47889999999999887764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.67  E-value=1.9e-08  Score=88.03  Aligned_cols=86  Identities=15%  Similarity=0.026  Sum_probs=59.8

Q ss_pred             CCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-------DGNVLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerALe~------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~-------da~al~~lG~ll~  200 (224)
                      +++++|+.+|++|+++      ++..+.+++++|.++. ..|++++|+.+|++|+++.+.       .+.++.++|.++.
T Consensus       117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            5778888888888776      2224577777887776 578888888888888876433       2346677777665


Q ss_pred             HHcCChHHHHHHHHHHHHhCC
Q 027404          201 INHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       201 ~~~gd~eeA~~~ferAL~l~P  221 (224)
                      . .|++++|+.+|++|+++.|
T Consensus       196 ~-~g~~~~A~~~~~~al~~~~  215 (383)
T 3ulq_A          196 D-LKQYEDAISHFQKAYSMAE  215 (383)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHH
T ss_pred             H-hcCHHHHHHHHHHHHHHHH
Confidence            4 4677888888887776643

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.67  E-value=1.5e-07  Score=83.83  Aligned_cols=90  Identities=14%  Similarity=0.123  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc--CC
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLI----WINH--KD  205 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll----~~~~--gd  205 (224)
                      ...++|+.++.++|++||++..+|+.-+.++. ..+  ++++|+++++++|..+|++..+|+..+.++    ....  ++
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence            34479999999999999999999999999987 577  999999999999999999999999998877    3331  68


Q ss_pred             hHHHHHHHHHHHHhCCCCC
Q 027404          206 APRAKSYFDRAVHSAPDDW  224 (224)
Q Consensus       206 ~eeA~~~ferAL~l~P~d~  224 (224)
                      +++++.++++++..+|.++
T Consensus       126 ~~~EL~~~~~~l~~~pkny  144 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNH  144 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.66  E-value=1.1e-07  Score=90.78  Aligned_cols=87  Identities=8%  Similarity=0.061  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++|..+|.+||+.+|.+..+|+.-++++. ..+  ++++|+++++++|+++|.+..+|.+.+.++......+++|++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~  167 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  167 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHH
Confidence            899999999999999999999999999987 688  77999999999999999999999999988766533899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|.|
T Consensus       168 ~~~I~~~p~n  177 (567)
T 1dce_A          168 DSLITRNFSN  177 (567)
T ss_dssp             HTTTTTTCCC
T ss_pred             HHHHHHCCCC
Confidence            9999999986

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.66  E-value=7e-08  Score=82.69  Aligned_cols=85  Identities=14%  Similarity=0.141  Sum_probs=69.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~  201 (224)
                      +++++|+.+|++|+++.|..      +.++.++|.++. ..|++++|+.+|++|+++.+..      +.++..+|.++..
T Consensus       241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  319 (406)
T 3sf4_A          241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA  319 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            68899999999999887766      678888898876 6899999999999999886544      6677788887765


Q ss_pred             HcCChHHHHHHHHHHHHhC
Q 027404          202 NHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~  220 (224)
                       .|++++|+.+|++|+++.
T Consensus       320 -~g~~~~A~~~~~~al~~~  337 (406)
T 3sf4_A          320 -LGNHDQAMHFAEKHLEIS  337 (406)
T ss_dssp             -HTCHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHH
Confidence             478999999999988764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.64  E-value=6.9e-08  Score=75.57  Aligned_cols=85  Identities=19%  Similarity=0.150  Sum_probs=69.4

Q ss_pred             CCHHHHHHHHHHHHHH---CCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA---YPED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP--GDG----NVLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerALe~---dP~n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP--~da----~al~~lG~ll~  200 (224)
                      +++++|+.+|++|+++   .+++    +.++.++|.++. ..|++++|+.+|++++++.+  .+.    .++.++|.+++
T Consensus        80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  158 (203)
T 3gw4_A           80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL-HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ  158 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            6899999999999998   4533    467899999887 69999999999999997643  232    34577888776


Q ss_pred             HHcCChHHHHHHHHHHHHhC
Q 027404          201 INHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       201 ~~~gd~eeA~~~ferAL~l~  220 (224)
                      . .|++++|+.+|++|+++.
T Consensus       159 ~-~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          159 Q-EKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             H-TTCHHHHHHHHHHHHHHH
T ss_pred             H-CcCHHHHHHHHHHHHHHH
Confidence            5 589999999999999863

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.63  E-value=1.7e-07  Score=68.43  Aligned_cols=64  Identities=14%  Similarity=0.100  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~--da~al~~lG~l  198 (224)
                      +++++|+.+|++|++++|+++.+++++|.++. ..|++++|+.+|+++++++|.  +..++..+..+
T Consensus        33 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~   98 (115)
T 2kat_A           33 EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVF   98 (115)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            68999999999999999999999999999987 699999999999999999885  44444444433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.61  E-value=3e-08  Score=86.21  Aligned_cols=85  Identities=16%  Similarity=0.070  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDAL------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~------~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~  201 (224)
                      +++++|+.+|++|+++.|.+..      ++.++|.++. .+|++++|+.+|++++.+.|..      +.++..+|.++..
T Consensus       237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  315 (411)
T 4a1s_A          237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL  315 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            5777777777777777664333      6777777766 5777777777777777776643      5566677766654


Q ss_pred             HcCChHHHHHHHHHHHHhC
Q 027404          202 NHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~  220 (224)
                       .|++++|+.+|++++++.
T Consensus       316 -~g~~~~A~~~~~~al~~~  333 (411)
T 4a1s_A          316 -LHEFNTAIEYHNRHLAIA  333 (411)
T ss_dssp             -TTCHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHH
Confidence             467777777777777654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.61  E-value=3.7e-07  Score=82.40  Aligned_cols=88  Identities=8%  Similarity=-0.053  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD-FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH----------  203 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd-~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~----------  203 (224)
                      .++++..++.++|+.||.|..+|..-+.++. ..+. +++++++++++|+.+|.|..+|.+.+.++....          
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~-~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~  203 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  203 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence            5788999999999999999999998888776 5777 689999999999999999999998888776552          


Q ss_pred             ---CChHHHHHHHHHHHHhCCCC
Q 027404          204 ---KDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       204 ---gd~eeA~~~ferAL~l~P~d  223 (224)
                         +.++++++++++|+.++|+|
T Consensus       204 ~~~~~~~eEle~~~~ai~~~P~d  226 (331)
T 3dss_A          204 LPENVLLKELELVQNAFFTDPND  226 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             cchHHHHHHHHHHHHHHHhCCCC
Confidence               34788999999999999986

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.58  E-value=9.9e-08  Score=88.33  Aligned_cols=85  Identities=16%  Similarity=0.004  Sum_probs=71.9

Q ss_pred             CCCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHH
Q 027404          133 GKESESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDGN---VLSMYG  196 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~-----dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-----dP~da~---al~~lG  196 (224)
                      ++++++|+.+|+++|++     .|+|+   .++.++|.++. .+|++++|+.+|+++|++     .|+|+.   .++++|
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            36889999999999975     56776   57788998887 699999999999999975     567766   477899


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHh
Q 027404          197 DLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       197 ~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      .+++. .|++++|+.+|++|+++
T Consensus       379 ~~~~~-~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          379 KLQLH-QGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHh-cCCHHHHHHHHHHHHHH
Confidence            88876 57899999999999985

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.56  E-value=4.6e-07  Score=82.51  Aligned_cols=90  Identities=11%  Similarity=0.046  Sum_probs=81.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-ChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK-DAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G-d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~g-d~eeA~~  211 (224)
                      +..++|+.++.++|.+||.+..+|+.-+.++. ..+ ++++|+++++++|..+|++..+|+..+.++....+ +++++++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            34578999999999999999999999999987 577 69999999999999999999999999988876535 8999999


Q ss_pred             HHHHHHHhCCCCC
Q 027404          212 YFDRAVHSAPDDW  224 (224)
Q Consensus       212 ~ferAL~l~P~d~  224 (224)
                      ++++++..+|.++
T Consensus       147 ~~~k~L~~dpkNy  159 (349)
T 3q7a_A          147 YIHGSLLPDPKNY  159 (349)
T ss_dssp             HHHHHTSSCTTCH
T ss_pred             HHHHHHHhCCCCH
Confidence            9999999999863

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.52  E-value=2.2e-07  Score=82.32  Aligned_cols=87  Identities=8%  Similarity=-0.138  Sum_probs=70.5

Q ss_pred             CCHHHHHHHHHHHHHHC-CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHcCChHH
Q 027404          134 KESESMDVYYQEMIKAY-PED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PG-DGNVLSMYGDLIWINHKDAPR  208 (224)
Q Consensus       134 ~d~e~A~~~yerALe~d-P~n-a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld--P~-da~al~~lG~ll~~~~gd~ee  208 (224)
                      +++++|+.+|++++... |.. ..+++++|.++. ..|++++|+.+|++++...  |. ..++++++|.++.. .|+.++
T Consensus       149 ~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-lGr~de  226 (282)
T 4f3v_A          149 ERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-QGNESA  226 (282)
T ss_dssp             TCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-HTCHHH
T ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-cCCHHH
Confidence            67778888887776643 211 358999999886 6999999999999999654  55 66789999988876 578999


Q ss_pred             HHHHHHHHHHhCCC
Q 027404          209 AKSYFDRAVHSAPD  222 (224)
Q Consensus       209 A~~~ferAL~l~P~  222 (224)
                      |...|++++..+|+
T Consensus       227 A~~~l~~a~a~~P~  240 (282)
T 4f3v_A          227 AVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhcCCc
Confidence            99999999999996

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.51  E-value=5.7e-07  Score=80.03  Aligned_cols=88  Identities=11%  Similarity=0.088  Sum_probs=80.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFV--KAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD------  205 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~e--eAe~~~erAL~ldP~da~al~~lG~ll~~~~gd------  205 (224)
                      +++++++.++.++|+.+|.|..+|+.-+.++. ..++++  +++++++++|+.+|.+..+|.+.+.++... ++      
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l-~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK-KHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS-GGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cccchhhh
Confidence            46799999999999999999999999999886 689888  999999999999999999999998777543 44      


Q ss_pred             hHHHHHHHHHHHHhCCCC
Q 027404          206 APRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       206 ~eeA~~~ferAL~l~P~d  223 (224)
                      ++++++++++++.++|+|
T Consensus       202 ~~eEl~~~~~aI~~~p~n  219 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQN  219 (306)
T ss_dssp             HHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            899999999999999987

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.51  E-value=2.5e-07  Score=80.13  Aligned_cols=86  Identities=14%  Similarity=0.105  Sum_probs=44.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAK--------PGDGNVLSMYGDLI  199 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld--------P~da~al~~lG~ll  199 (224)
                      +++++|+.+|++|+++.|...      .++.++|.++. .+|++++|+.+|++++++.        |....++.++|.++
T Consensus        67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  145 (373)
T 1hz4_A           67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL  145 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence            455566666666655443321      22445555554 4566666666666655543        22233444555554


Q ss_pred             HHHcCChHHHHHHHHHHHHhCC
Q 027404          200 WINHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       200 ~~~~gd~eeA~~~ferAL~l~P  221 (224)
                      +. .|++++|+.+|++++.+.|
T Consensus       146 ~~-~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A          146 WA-WARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHTT
T ss_pred             HH-hcCHHHHHHHHHHHHHHhh
Confidence            43 3556666666666655544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.50  E-value=8e-07  Score=65.71  Aligned_cols=62  Identities=11%  Similarity=0.131  Sum_probs=56.3

Q ss_pred             CCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAY-------PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       134 ~d~e~A~~~yerALe~d-------P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      +++..|+.+|++|++..       +..+.++.+||.+++ .+|++++|+.++++|++++|++..++.+++
T Consensus        19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            68999999999999973       345789999999998 699999999999999999999999988876

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.49  E-value=7.5e-07  Score=81.06  Aligned_cols=83  Identities=16%  Similarity=0.201  Sum_probs=60.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCh
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDA  206 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~----~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~  206 (224)
                      .++++|+.+|++|++.  +++.+++++|.++. .    .+++++|+.+|++|++.  +++.++.++|.++..-   .+++
T Consensus       345 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~  419 (490)
T 2xm6_A          345 EEHKKAVEWFRKAAAK--GEKAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDY  419 (490)
T ss_dssp             HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             ccHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence            3677777777777776  56778888887765 4    57888888888888775  3677777888766541   4678


Q ss_pred             HHHHHHHHHHHHhCC
Q 027404          207 PRAKSYFDRAVHSAP  221 (224)
Q Consensus       207 eeA~~~ferAL~l~P  221 (224)
                      ++|+.+|++|++.+|
T Consensus       420 ~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          420 VQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCC
Confidence            888888888887764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.49  E-value=1e-06  Score=65.09  Aligned_cols=69  Identities=14%  Similarity=0.142  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAK-------PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld-------P~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .+.-.+.+|.+++ .++++..|+.+|++|++..       +..+.++..+|.+++. .|++++|+.++++|++++|++
T Consensus         4 sa~dc~~lG~~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A            4 TAEDCFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCC
Confidence            4667789999998 6999999999999999863       3467889999999876 578999999999999999986

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.48  E-value=6.9e-07  Score=77.26  Aligned_cols=87  Identities=14%  Similarity=0.026  Sum_probs=73.3

Q ss_pred             CCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAY--------PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-----GNVLSMYGDLI  199 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~d--------P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-----a~al~~lG~ll  199 (224)
                      .|++++|+.+|+++++..        |....++.++|.+++ ..|++++|+.+|++++++.|..     ..++..+|.++
T Consensus       106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  184 (373)
T 1hz4_A          106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS  184 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence            379999999999999875        445678889999887 6999999999999999998753     45677888877


Q ss_pred             HHHcCChHHHHHHHHHHHHhCC
Q 027404          200 WINHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       200 ~~~~gd~eeA~~~ferAL~l~P  221 (224)
                      .. .|++++|+.++++++.+.+
T Consensus       185 ~~-~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          185 LA-RGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HH-HTCHHHHHHHHHHHHHHHT
T ss_pred             HH-cCCHHHHHHHHHHHHHHHh
Confidence            65 5899999999999998743

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.48  E-value=2.1e-07  Score=81.52  Aligned_cols=84  Identities=17%  Similarity=-0.060  Sum_probs=58.3

Q ss_pred             CCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAY------PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-------DGNVLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerALe~d------P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~-------da~al~~lG~ll~  200 (224)
                      +++++|+.+|++|+++.      |..+.+++++|.++. ..|++++|+.+|++|+++.+.       .+.++.++|.++.
T Consensus       115 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            57788888888887652      223567777787776 578888888888888776442       2345667777665


Q ss_pred             HHcCChHHHHHHHHHHHHh
Q 027404          201 INHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       201 ~~~gd~eeA~~~ferAL~l  219 (224)
                      . .+++++|+.+|++|+++
T Consensus       194 ~-~~~~~~A~~~~~~al~~  211 (378)
T 3q15_A          194 D-FKHYDKALPHLEAALEL  211 (378)
T ss_dssp             H-TTCHHHHHHHHHHHHHH
T ss_pred             H-hCCHHHHHHHHHHHHHH
Confidence            4 46788888888887775

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.47  E-value=2.2e-06  Score=77.37  Aligned_cols=86  Identities=8%  Similarity=0.058  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-hHHHHHH
Q 027404          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD-APRAKSY  212 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd-~eeA~~~  212 (224)
                      ++++..++.++|..+|.+..+|+.-++++. ..+  +++++++++.++++.+|.+..+|.+.+.++.. .++ +++++++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~-~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHHH
Confidence            789999999999999999999999999886 577  48999999999999999999999998887765 456 6999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      +++++..+|.|
T Consensus       168 ~~~~I~~~p~N  178 (331)
T 3dss_A          168 TDSLITRNFSN  178 (331)
T ss_dssp             HHHHHHHCSCC
T ss_pred             HHHHHHHCCCC
Confidence            99999999987

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.40  E-value=7.4e-07  Score=81.51  Aligned_cols=81  Identities=14%  Similarity=0.113  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCChHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR----GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW--INHKDAPR  208 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~----Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~--~~~gd~ee  208 (224)
                      ++++|+.+|++|++.+|.++.+++++|.++. ..    +++++|+.+|++|+   |+++.++.++|.+++  ...+++++
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~  269 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQ  269 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH
Confidence            6666777777777777776666666666553 12    46667777777666   666666666666533  23456666


Q ss_pred             HHHHHHHHHHh
Q 027404          209 AKSYFDRAVHS  219 (224)
Q Consensus       209 A~~~ferAL~l  219 (224)
                      |+.+|++|++.
T Consensus       270 A~~~~~~Aa~~  280 (452)
T 3e4b_A          270 MMKYLDNGRAA  280 (452)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            66666666654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.39  E-value=1.5e-06  Score=67.19  Aligned_cols=79  Identities=19%  Similarity=0.172  Sum_probs=67.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCChHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~eeA~  210 (224)
                      +++++|+.+|++|.+.....+.    +|.++. .....++|+++|++|++.  +++.+++++|.++..-   .+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            5889999999999999755544    887775 567889999999999987  7999999999887641   47899999


Q ss_pred             HHHHHHHHh
Q 027404          211 SYFDRAVHS  219 (224)
Q Consensus       211 ~~ferAL~l  219 (224)
                      .+|++|.+.
T Consensus        82 ~~~~~Aa~~   90 (138)
T 1klx_A           82 QYYSKACGL   90 (138)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            999999876

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.36  E-value=1.1e-06  Score=80.31  Aligned_cols=79  Identities=19%  Similarity=0.277  Sum_probs=43.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCChHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLK--EIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAPR  208 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~--e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~ee  208 (224)
                      +++++|+.+|++|+   |+++.+++++|.+++  ...+++++|+.+|++|++.  +++.+++++|.++..-   ..++++
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~  305 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKA  305 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            45666666666665   666666666665532  2355666666666665543  3555555666544310   015556


Q ss_pred             HHHHHHHHH
Q 027404          209 AKSYFDRAV  217 (224)
Q Consensus       209 A~~~ferAL  217 (224)
                      |+.+|++|.
T Consensus       306 A~~~~~~Aa  314 (452)
T 3e4b_A          306 AEAHFEKAV  314 (452)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHHh
Confidence            666665554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.32  E-value=1.8e-06  Score=63.65  Aligned_cols=55  Identities=11%  Similarity=0.042  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN  190 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~  190 (224)
                      ..++|..++++||++||+++.+++.+|.+++ .+|+|++|+.+++++++.+|.++.
T Consensus        24 ~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           24 MTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcc
Confidence            4689999999999999999999999999988 699999999999999999998433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.30  E-value=6.8e-06  Score=74.70  Aligned_cols=81  Identities=12%  Similarity=0.085  Sum_probs=42.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCh
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDA  206 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~----~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~  206 (224)
                      +++++|+.+|++|++.  +++.+++.+|.++. .    .+++++|+++|++|++.  +++.++..+|.++..-   .+++
T Consensus        57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYM-NGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence            4555566666665554  45555555555543 3    45555566555555543  3555555555544321   2355


Q ss_pred             HHHHHHHHHHHHh
Q 027404          207 PRAKSYFDRAVHS  219 (224)
Q Consensus       207 eeA~~~ferAL~l  219 (224)
                      ++|+.+|++|++.
T Consensus       132 ~~A~~~~~~a~~~  144 (490)
T 2xm6_A          132 AESVKWFRLAAEQ  144 (490)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHC
Confidence            5555555555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.22  E-value=4.5e-06  Score=75.93  Aligned_cols=88  Identities=14%  Similarity=0.052  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChH------
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP------  207 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G-d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~e------  207 (224)
                      .+++++.++.++|..+|.+..+|+.-+.++....+ +++++++++.++|+.+|.+..+|.+.+.++... ++++      
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l-~~~~~~~~~~  182 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF-STLGRISEAQ  182 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH-HHTTCCCHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccccccchhh
Confidence            68999999999999999999999999999874327 899999999999999999999999988777554 3466      


Q ss_pred             --HHHHHHHHHHHhCCCC
Q 027404          208 --RAKSYFDRAVHSAPDD  223 (224)
Q Consensus       208 --eA~~~ferAL~l~P~d  223 (224)
                        +++++++++++++|.|
T Consensus       183 ~~eELe~~~k~I~~dp~N  200 (349)
T 3q7a_A          183 WGSELDWCNEMLRVDGRN  200 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence              9999999999999986

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.12  E-value=4.7e-06  Score=78.56  Aligned_cols=85  Identities=9%  Similarity=0.008  Sum_probs=69.2

Q ss_pred             CCCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHH
Q 027404          133 GKESESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDGNVL---SMYG  196 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~-----dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-----dP~da~al---~~lG  196 (224)
                      .|++++|+.+|++||++     -|+||   ..++|+|.++. .+|++++|+.+|++|+++     .|+|+.+.   .+++
T Consensus       364 ~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  442 (490)
T 3n71_A          364 LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW-HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM  442 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            38999999999999976     56666   67889999987 699999999999999974     78887754   4566


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHh
Q 027404          197 DLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       197 ~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      .++..+ +.+++|+..|++|.+.
T Consensus       443 ~~~~e~-~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          443 QTEMEL-RMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHH
Confidence            665554 5699999999988753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.09  E-value=1.8e-06  Score=76.47  Aligned_cols=84  Identities=12%  Similarity=-0.158  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD--GNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d--a~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +++++|.+.|++++..+|++. +++.+|.+++ ..+++++|+.+|++++...+..  ..+++++|.++.. .|++++|+.
T Consensus       116 g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG~~~eAl~  192 (282)
T 4f3v_A          116 GNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LALFTEAER  192 (282)
T ss_dssp             TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CCCHHHHHH
Confidence            799999999999999999999 9999999887 6999999999999888753221  3578899988765 689999999


Q ss_pred             HHHHHHHhC
Q 027404          212 YFDRAVHSA  220 (224)
Q Consensus       212 ~ferAL~l~  220 (224)
                      +|++++...
T Consensus       193 ~l~~a~~g~  201 (282)
T 4f3v_A          193 RLTEANDSP  201 (282)
T ss_dssp             HHHHHHTST
T ss_pred             HHHHHhcCC
Confidence            999998543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.09  E-value=1.8e-05  Score=62.50  Aligned_cols=87  Identities=11%  Similarity=0.003  Sum_probs=73.0

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCChHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFV---KAEEYCGRAILAK-P-GDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~e---eAe~~~erAL~ld-P-~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      ....++..|++++..++....+.++||+++. ...+..   +++..++..+..+ | ...+.++.+|..++. .|+|.+|
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv-~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHT-TSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHHH
Confidence            4567889999999999999999999999986 344444   5999999999887 5 456678888887766 5799999


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      ..+++..|++.|++
T Consensus        94 ~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           94 LKYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999999986

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.08  E-value=7.3e-06  Score=66.67  Aligned_cols=62  Identities=13%  Similarity=0.054  Sum_probs=56.5

Q ss_pred             CCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAY-P-EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       134 ~d~e~A~~~yerALe~d-P-~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      .++++++.+++..++.+ | ++.+++|++|..++ +.++|++|.+|++++|+++|++.++....-
T Consensus        49 ~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           49 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            47889999999999999 8 67899999999998 799999999999999999999999986543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.91  E-value=8.3e-06  Score=73.05  Aligned_cols=56  Identities=16%  Similarity=0.141  Sum_probs=51.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027404          133 GKESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD  188 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~n-a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d  188 (224)
                      .|+.++|+.+|+|||+++|+. ..+++.||.+++..+||+++|.+++++|++++|..
T Consensus       217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            479999999999999999985 99999999998743599999999999999998873

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.90  E-value=5.8e-05  Score=73.91  Aligned_cols=82  Identities=9%  Similarity=0.052  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAE-EYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe-~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      .++....|++||...|.++.+|+.||.++. ..|+.++|. ..|++|+...|.....|..|+.+... .+++++|...|+
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~-~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iye  402 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQG-EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTIL  402 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence            456778999999999999999999999886 689988997 99999999999999999888877654 678999999999


Q ss_pred             HHHHh
Q 027404          215 RAVHS  219 (224)
Q Consensus       215 rAL~l  219 (224)
                      +++..
T Consensus       403 k~l~~  407 (679)
T 4e6h_A          403 SCIDR  407 (679)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99974

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.76  E-value=4.4e-05  Score=68.40  Aligned_cols=83  Identities=14%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILA----------KPGDGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~--na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l----------dP~da~al~~lG~ll~~  201 (224)
                      +++..|...|+++.+..|+  .+..+++   ++. .+|++++|++.++++++.          +|+|+.++.++..+...
T Consensus       192 ~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~-~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~  267 (310)
T 3mv2_B          192 ETATSNFYYYEELSQTFPTWKTQLGLLN---LHL-QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM  267 (310)
T ss_dssp             STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHH-HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHH-HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence            3678999999999888887  4566666   343 689999999999988776          59999999888776665


Q ss_pred             HcCChHHHHHHHHHHHHhCCCC
Q 027404          202 NHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      + |+  +|.++++++.+++|++
T Consensus       268 l-gk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          268 Q-GL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             T-TC--TTHHHHHHHHHTTCCC
T ss_pred             h-Ch--HHHHHHHHHHHhCCCC
Confidence            4 55  8999999999999986

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.73  E-value=7.9e-05  Score=65.10  Aligned_cols=87  Identities=9%  Similarity=0.048  Sum_probs=71.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPE------DALVLANYAKFLKEIRGDFVKAEEYCGRAILA------KPGDGNVLSMYGDLIW  200 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l------dP~da~al~~lG~ll~  200 (224)
                      .+++++|+.+|++++...+.      -+.++.++|.++. .+|++++|+.++++++..      .|....++..++.++.
T Consensus       108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
T 4b4t_Q          108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH  186 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            36889999999999986433      2578899999987 699999999999999876      3445668888888876


Q ss_pred             HHcCChHHHHHHHHHHHHhCC
Q 027404          201 INHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       201 ~~~gd~eeA~~~ferAL~l~P  221 (224)
                      . .+++++|..+|++|+.+.+
T Consensus       187 ~-~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          187 K-LRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHH
T ss_pred             H-hCcHHHHHHHHHHHHHHhh
Confidence            5 5799999999999998754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.65  E-value=0.00016  Score=70.84  Aligned_cols=88  Identities=10%  Similarity=0.052  Sum_probs=65.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCChHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---DGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~---da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      ++.+.|...|+++|+..|+++.+|..|+.+.. ..|+.+.|...|++|+...|+   ...+|..+..+- ...|+.+.+.
T Consensus       484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~-~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE-~~~G~~~~~~  561 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYFATDGEYINKYLDFLI-YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE-SKVGSLNSVR  561 (679)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH-HHTCCSHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHcCCHHHHH
Confidence            45678888888888888888888888887765 578888888888888887773   344555555433 3457788888


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      ..++++++..|++
T Consensus       562 ~v~~R~~~~~P~~  574 (679)
T 4e6h_A          562 TLEKRFFEKFPEV  574 (679)
T ss_dssp             HHHHHHHHHSTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            8888888888864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.59  E-value=0.00021  Score=75.43  Aligned_cols=65  Identities=15%  Similarity=0.038  Sum_probs=57.8

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       151 P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      .+.+.+|++||.++. ..|++++|+.+|.+|     +|+.+|...+.++.. .|++++|+++|..|++..++
T Consensus      1102 vn~p~vWsqLAKAql-~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQL-QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             cCCHHHHHHHHHHHH-hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhccc
Confidence            578999999999986 799999999999887     889999999988755 68999999999999988754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.56  E-value=0.00018  Score=64.38  Aligned_cols=81  Identities=19%  Similarity=0.207  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 027404          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP--GDGNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (224)
Q Consensus       139 A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP--~da~al~~lG~ll~~~~gd~eeA~~~ferA  216 (224)
                      |+.+|++.++..+.+..++..+|.++. ..|++++|+++|.+.|..+|  ++.+++..++.++.. .++++.|...++++
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~-~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQA-ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            677888888887777777889998887 68999999999999999997  788888888877765 67899999999999


Q ss_pred             HHhCC
Q 027404          217 VHSAP  221 (224)
Q Consensus       217 L~l~P  221 (224)
                      .+.+|
T Consensus       163 ~~~~~  167 (310)
T 3mv2_B          163 TNAIE  167 (310)
T ss_dssp             HHHSC
T ss_pred             HhcCc
Confidence            99988

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.52  E-value=0.00027  Score=64.92  Aligned_cols=57  Identities=14%  Similarity=0.073  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV  191 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a  191 (224)
                      .+++++|+.++++|+++|| +..++..+|.++. ..|++++|+++|++|+.++|.+...
T Consensus       290 ~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~-~~G~~~eA~e~~~~AlrL~P~~~t~  346 (372)
T 3ly7_A          290 KGKTDESYQAINTGIDLEM-SWLNYVLLGKVYE-MKGMNREAADAYLTAFNLRPGANTL  346 (372)
T ss_dssp             HTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcChH
Confidence            3899999999999999997 4788888898876 7999999999999999999988643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.41  E-value=0.00036  Score=64.65  Aligned_cols=60  Identities=13%  Similarity=0.048  Sum_probs=51.3

Q ss_pred             CCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 027404          134 KESESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDGNVLSM  194 (224)
Q Consensus       134 ~d~e~A~~~yerALe~-----dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-----dP~da~al~~  194 (224)
                      |++++|+.+|++||++     -|++|   ..++|+|.++. .+|++++|+.+|+||+++     .|+|+.+...
T Consensus       354 g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l  426 (433)
T 3qww_A          354 QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM-GLENKAAGEKALKKAIAIMEVAHGKDHPYISEI  426 (433)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            8999999999999976     56665   67889999987 699999999999999975     7888877543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.0004  Score=60.60  Aligned_cols=84  Identities=20%  Similarity=0.118  Sum_probs=66.1

Q ss_pred             CCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP---GD----GNVLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerALe~------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP---~d----a~al~~lG~ll~  200 (224)
                      +++++|..++++++..      .|...+++.+++.++. ..|++++|..+|++|+.+.+   ++    +..+..+|.++ 
T Consensus       149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~-  226 (434)
T 4b4t_Q          149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH-KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH-  226 (434)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-
T ss_pred             cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH-
Confidence            6899999999999876      3444689999999887 69999999999999998754   23    23344555544 


Q ss_pred             HHcCChHHHHHHHHHHHHh
Q 027404          201 INHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       201 ~~~gd~eeA~~~ferAL~l  219 (224)
                      ...+++++|..+|.+++..
T Consensus       227 ~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          227 CEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             TSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHH
Confidence            3458899999999999864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.35  E-value=0.0028  Score=55.98  Aligned_cols=90  Identities=22%  Similarity=0.186  Sum_probs=75.9

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI------------  199 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll------------  199 (224)
                      ..+.+++|+...+..|+.+|.|+.....|..+|+ ..|++++|.+.++.+.+++|+.......|..++            
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG   87 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   87 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            3478999999999999999999999999999998 799999999999999999999876654443321            


Q ss_pred             ----------------------HHHcCChHHHHHHHHHHHHhCCC
Q 027404          200 ----------------------WINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       200 ----------------------~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                                            ....|+.++|.+.-.+|+...|.
T Consensus        88 ~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           88 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence                                  11247899999999999988775

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.25  E-value=0.00071  Score=62.39  Aligned_cols=60  Identities=12%  Similarity=0.016  Sum_probs=51.1

Q ss_pred             CCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 027404          134 KESESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDGNVLSM  194 (224)
Q Consensus       134 ~d~e~A~~~yerALe~-----dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l-----dP~da~al~~  194 (224)
                      |++++|+.+|+++|++     -|++|   ..++|+|.++. .+|++++|+.+|++|+++     .|+|+.+...
T Consensus       343 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~-~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          343 GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL-HQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            7999999999999976     56666   57889999987 699999999999999974     7888876543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.23  E-value=0.0023  Score=59.69  Aligned_cols=60  Identities=18%  Similarity=0.154  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~  197 (224)
                      .+++...|++||...|.++.+|..|+.++. .+|+.++|...|+||+.. |.+...+..|+.
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~-~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~  254 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLI-GIGQKEKAKKVVERGIEM-SDGMFLSLYYGL  254 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence            466788999999999999999999999886 699999999999999999 998766655544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.18  E-value=0.0011  Score=53.32  Aligned_cols=87  Identities=13%  Similarity=-0.047  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG---DFVKAEEYCGRAILAKPG-DGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G---d~eeAe~~~erAL~ldP~-da~al~~lG~ll~~~~gd~eeA  209 (224)
                      .++...+.-|++-+. +.-.+.+.++||+++.. ..   +..+++..++..+...|. ..+.++.+|..++. .++|.+|
T Consensus        20 eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~-S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~A   96 (144)
T 1y8m_A           20 QQLEILRQQVVSEGG-PTATIQSRFNYAWGLIK-STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMA   96 (144)
T ss_dssp             HHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHH
T ss_pred             HHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHH
Confidence            345555555555422 35678999999988863 33   445899999999998885 44566667766665 5789999


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      ..+.+..|++.|++
T Consensus        97 r~y~d~lL~~eP~n  110 (144)
T 1y8m_A           97 KRYVDTLFEHERNN  110 (144)
T ss_dssp             HHHHHHHHHTCCCC
T ss_pred             HHHHHHHHhcCCCc
Confidence            99999999999976

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.09  E-value=0.0014  Score=52.12  Aligned_cols=86  Identities=13%  Similarity=-0.052  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCChHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG---DFVKAEEYCGRAILAKPG-DGNVLSMYGDLIWINHKDAPRAK  210 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G---d~eeAe~~~erAL~ldP~-da~al~~lG~ll~~~~gd~eeA~  210 (224)
                      ++...++-|++-+ ...-.+.+.++||+++.. ..   +..+++..++..++.+|. ..+.++.+|..++.+ |+|++|.
T Consensus        22 eL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~-S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl-gdY~~Ar   98 (134)
T 3o48_A           22 QLEILRQQVVSEG-GPTATIQSRFNYAWGLIK-STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAK   98 (134)
T ss_dssp             HHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCChhhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh-hhHHHHH
Confidence            3444444454433 223356788888877763 33   344788888888877774 355666677666554 6788888


Q ss_pred             HHHHHHHHhCCCC
Q 027404          211 SYFDRAVHSAPDD  223 (224)
Q Consensus       211 ~~ferAL~l~P~d  223 (224)
                      .+.+..+++.|++
T Consensus        99 ~y~d~lL~~eP~N  111 (134)
T 3o48_A           99 RYVDTLFEHERNN  111 (134)
T ss_dssp             HHHHHHHTTCTTC
T ss_pred             HHHHHHHhhCCCC
Confidence            8888888888875

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.05  E-value=0.00098  Score=52.47  Aligned_cols=62  Identities=13%  Similarity=0.054  Sum_probs=54.1

Q ss_pred             CCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAY-P-EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       134 ~d~e~A~~~yerALe~d-P-~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      .+..+++.+++..+..+ | ..-+.++.+|..++ +.|+|.+|.+|++.+|++.|++.+|.....
T Consensus        52 ~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           52 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45667999999999987 6 56689999999998 799999999999999999999999986543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.94  E-value=0.0043  Score=50.72  Aligned_cols=84  Identities=15%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChH
Q 027404          136 SESMDVYYQEMIKAYPE--------DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP  207 (224)
Q Consensus       136 ~e~A~~~yerALe~dP~--------na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~e  207 (224)
                      .++-.+.|++|+..-|-        ....|..||.+.  ..+|.++|.+.|+.|+.+....+.+|..+|.+-.. +++..
T Consensus        35 l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~--ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiR-qgnl~  111 (161)
T 4h7y_A           35 LNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK--AIQEPDDARDYFQMARANCKKFAFVHISFAQFELS-QGNVK  111 (161)
T ss_dssp             HHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH--HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cccHH
Confidence            36777899999998775        357888899763  36899999999999999988999999999987654 68899


Q ss_pred             HHHHHHHHHHHhCCC
Q 027404          208 RAKSYFDRAVHSAPD  222 (224)
Q Consensus       208 eA~~~ferAL~l~P~  222 (224)
                      .|...+.+|+-+.|.
T Consensus       112 kARkILg~AiG~~~k  126 (161)
T 4h7y_A          112 KSKQLLQKAVERGAV  126 (161)
T ss_dssp             HHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHhccCCC
Confidence            999999999998884

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.89  E-value=0.0041  Score=51.21  Aligned_cols=80  Identities=14%  Similarity=0.082  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Q 027404          134 KESESMDVYYQEMIKAYPEDA---------LVLANYAKFLKEIRGDFVKAEEYCGRAILAK-------------------  185 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na---------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ld-------------------  185 (224)
                      +.|+.|+..+..++.+..+++         .++..+|.+++ .+++|.+|+.+|++||.+.                   
T Consensus        34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf-~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~  112 (167)
T 3ffl_A           34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLF-HDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAST  112 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred             hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCC
Confidence            689999999998777644433         48889999998 5999999999999997531                   


Q ss_pred             ------CCCHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 027404          186 ------PGDGNVLSMYGDLIWINHKDAPRAKSYFDR  215 (224)
Q Consensus       186 ------P~da~al~~lG~ll~~~~gd~eeA~~~fer  215 (224)
                            +.+.++.+.++.++..+ +++++|+..++.
T Consensus       113 p~s~~~~~e~Elkykia~C~~~l-~~~~~Ai~~Le~  147 (167)
T 3ffl_A          113 PQSQCLPSEIEVKYKLAECYTVL-KQDKDAIAILDG  147 (167)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHT-TCHHHHHHHHHT
T ss_pred             cccccccchHHHHHHHHHHHHHH-CCHHHHHHHHhc
Confidence                  12236778888888775 689999999874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.79  E-value=0.0029  Score=67.04  Aligned_cols=81  Identities=11%  Similarity=0.085  Sum_probs=54.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------C
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP-------------------------G  187 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP-------------------------~  187 (224)
                      .+++++|..+|.+|        ..|..+|.++. ..|++++|++++++|...++                         .
T Consensus      1208 eg~YeeA~~~Y~kA--------~ny~rLA~tLv-kLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv 1278 (1630)
T 1xi4_A         1208 EKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 1278 (1630)
T ss_pred             cCCHHHHHHHHHhh--------hHHHHHHHHHH-HhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc
Confidence            36778888888876        36667777766 57788888888877744333                         1


Q ss_pred             CHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          188 DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       188 da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +++.+..++..| ...|.|++|+.+|++++.++|.+
T Consensus      1279 ~~deLeeli~yY-e~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A         1279 HADELEELINYY-QDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred             CHHHHHHHHHHH-HHcCCHHHHHHHHHHHhccChhH
Confidence            233333444433 44688999999999998888754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.76  E-value=0.0041  Score=49.47  Aligned_cols=62  Identities=10%  Similarity=0.024  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n-a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      .+..+++..++..++.+|.. -+.++.+|..++ +.|+|++|.+|.++++++.|++.+|.....
T Consensus        57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            46779999999999999954 689999999888 799999999999999999999999986543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.74  E-value=0.011  Score=54.88  Aligned_cols=87  Identities=8%  Similarity=0.049  Sum_probs=66.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----------------------------------------HHHHcCCHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKF----------------------------------------LKEIRGDFVK  173 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~----------------------------------------l~e~~Gd~ee  173 (224)
                      ++.++|...|++|+.. |.+..++..|+.+                                        .. +.++.++
T Consensus       227 ~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~-r~~~~~~  304 (493)
T 2uy1_A          227 GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL-KKRGLEL  304 (493)
T ss_dssp             TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHH-HHHCHHH
T ss_pred             CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH-HcCCHHH
Confidence            5789999999999999 9987666655543                                        21 3567889


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          174 AEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       174 Ae~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      |...|++| ...+....+|..++.+-+...++++.|...|+++++..|++
T Consensus       305 AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~  353 (493)
T 2uy1_A          305 FRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS  353 (493)
T ss_dssp             HHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence            99999999 43333566776667665555567999999999999987764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.73  E-value=0.0061  Score=49.04  Aligned_cols=62  Identities=10%  Similarity=0.024  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n-a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      .+..+++.+++..+..+|.+ -+.++.+|..++ +.|+|.+|.+|.+++|++.|++.+|.....
T Consensus        56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            56789999999999999954 589999999888 799999999999999999999999976543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.57  E-value=0.0088  Score=56.10  Aligned_cols=79  Identities=8%  Similarity=-0.066  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+++|++|     +++.+|.....++. ..|+++.|..+... |...|++   +..+..++ ...|++++|+.+|
T Consensus       162 g~yq~AVea~~KA-----~~~~~Wk~v~~aCv-~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Y-ek~G~~eEai~lL  230 (449)
T 1b89_A          162 GEYQAAVDGARKA-----NSTRTWKEVCFACV-DGKEFRLAQMCGLH-IVVHADE---LEELINYY-QDRGYFEELITML  230 (449)
T ss_dssp             TCHHHHHHHHHHH-----TCHHHHHHHHHHHH-HTTCHHHHHHTTTT-TTTCHHH---HHHHHHHH-HHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHc-----CCchhHHHHHHHHH-HcCcHHHHHHHHHH-HHhCHhh---HHHHHHHH-HHCCCHHHHHHHH
Confidence            4455555555555     34455554444443 34555555444443 2233322   22333444 4568899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++++.+++.+
T Consensus       231 e~aL~le~ah  240 (449)
T 1b89_A          231 EAALGLERAH  240 (449)
T ss_dssp             HHHTTSTTCC
T ss_pred             HHHhCCcHHH
Confidence            9999988653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.14  E-value=0.00088  Score=62.91  Aligned_cols=75  Identities=12%  Similarity=0.004  Sum_probs=0.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|..++++.     +++.+|..+|.++. ..|++++|+.+|.++     .|+..+...+..+.. .|++++|+.|
T Consensus        16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l-~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~-~g~~EeAi~y   83 (449)
T 1b89_A           16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQL-QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhC-----CChHHHHHHHHHHH-HcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHh-CCCHHHHHHH
Confidence            46788999999998     45679999999887 689999999999775     455677777766544 5789999999


Q ss_pred             HHHHHHh
Q 027404          213 FDRAVHS  219 (224)
Q Consensus       213 ferAL~l  219 (224)
                      ++.+++.
T Consensus        84 l~~ark~   90 (449)
T 1b89_A           84 LQMARKK   90 (449)
T ss_dssp             -------
T ss_pred             HHHHHHh
Confidence            9998864

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.95  E-value=0.022  Score=53.92  Aligned_cols=66  Identities=15%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW  200 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~  200 (224)
                      ..+..|..+|++|+.++|++...++.+|.+.. .+++.-+|+-||-|++....-++.+..++..++-
T Consensus       166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~-~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh-cccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            45789999999999999999999999998776 6899999999999999888778999888876654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.83  E-value=0.016  Score=47.42  Aligned_cols=59  Identities=19%  Similarity=0.235  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS  193 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~  193 (224)
                      ++.++|...|+.|+.++...+-+|..+|.|-. ++|+..+|.+.+.+||...|.+.+.+.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi-Rqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFEL-SQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            57789999999999998889999999999976 799999999999999999999988764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.92  E-value=0.29  Score=44.06  Aligned_cols=57  Identities=9%  Similarity=-0.020  Sum_probs=46.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404          160 YAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (224)
Q Consensus       160 lA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~  218 (224)
                      ++.++. ..|++.+|+..+++++..+|-+-.++..+-.+++. .|+..+|+..|+++.+
T Consensus       177 ~~~~~l-~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~-~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          177 KAEAEI-ACGRASAVIAELEALTFEHPYREPLWTQLITAYYL-SDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            444444 58999999999999999999999888877666654 6899999999998754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.44  E-value=0.12  Score=51.25  Aligned_cols=58  Identities=14%  Similarity=-0.000  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      ..+...+.||. .+|+++-|+++.++|+...|.+-..|+.|+.+|.. .++|+.|+-.+.
T Consensus       338 ~LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLN  395 (754)
T 4gns_B          338 DLLNIQTNFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAIN  395 (754)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHh
Confidence            45666788887 68999999999999999999999999999999877 579999986654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.22  E-value=0.15  Score=48.17  Aligned_cols=62  Identities=19%  Similarity=0.251  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       156 ~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      .+..+|.+.. ....+..|+.||.+|+.++|++...++.+|.+... .++.-+|+-+|-|++..
T Consensus       154 ~l~~LGDL~R-Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          154 CLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSS
T ss_pred             HHHHcccHHH-HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhc
Confidence            4556676654 57788999999999999999999999999976544 67888999999999864

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.91  E-value=0.097  Score=42.95  Aligned_cols=61  Identities=11%  Similarity=0.120  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 027404          157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---------NVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (224)
Q Consensus       157 l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da---------~al~~lG~ll~~~~gd~eeA~~~ferAL~l  219 (224)
                      ++.-...++ ..+.|+-|+.....++.+..+++         +++..+|.+++. .+.|.+|+.+|++||++
T Consensus        23 l~dqik~L~-d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           23 VIDHVRDMA-AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHH
Confidence            333344455 48999999999998776644333         377889999887 57899999999999875

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.68  E-value=0.18  Score=44.41  Aligned_cols=55  Identities=27%  Similarity=0.347  Sum_probs=50.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      ..|++++|++.+...|+.+|.|+.....|-.+++. .|++++|+..++.+.+++|+
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGG
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCch
Confidence            47999999999999999999999999888888776 58999999999999999996

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=93.20  E-value=1.4  Score=40.96  Aligned_cols=48  Identities=17%  Similarity=-0.022  Sum_probs=20.2

Q ss_pred             CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       134 ~d~e~A~~~yerALe~--dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      +++++|..+|+++.+.  .| |..++..+=..+. ..|+.++|++.|++..+
T Consensus       119 g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A          119 DDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFC-RKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             TCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHH-HCCCHHHHHHHHHHHHh
Confidence            3445555555554443  12 2233333222232 34555555555554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.87  E-value=0.49  Score=44.41  Aligned_cols=31  Identities=16%  Similarity=-0.046  Sum_probs=27.3

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027404          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRA  181 (224)
Q Consensus       150 dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erA  181 (224)
                      ..+++..|..+|.++. .+++++.|+++|.++
T Consensus       677 ~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          677 DESAEMKWRALGDASL-QRFNFKLAIEAFTNA  707 (814)
T ss_dssp             TCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             hhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHc
Confidence            5567899999999887 699999999999986

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.28  E-value=1.8  Score=40.10  Aligned_cols=83  Identities=13%  Similarity=-0.049  Sum_probs=61.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          133 GKESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~-na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--dP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      .+.+++|...|+++.+..-. |..++..+-..+. ..|++++|+++|++..+.  .| +...|..+-..+.. .|++++|
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~-~g~~~~A  159 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCR-KGDADKA  159 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH-TTCHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHH-CCCHHHH
Confidence            35789999999999886322 5667777776776 689999999999998875  45 44555544444444 6889999


Q ss_pred             HHHHHHHHH
Q 027404          210 KSYFDRAVH  218 (224)
Q Consensus       210 ~~~ferAL~  218 (224)
                      ..+|++..+
T Consensus       160 ~~l~~~M~~  168 (501)
T 4g26_A          160 YEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998775

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.74  E-value=0.83  Score=41.04  Aligned_cols=49  Identities=6%  Similarity=-0.060  Sum_probs=44.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      +++++|+..++++++.+|-+-.++..+-.+++ ..|+..+|++.|+++-+
T Consensus       185 g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~-~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          185 GRASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence            78999999999999999999999999888887 69999999999998754

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=89.38  E-value=0.84  Score=39.13  Aligned_cols=48  Identities=21%  Similarity=0.149  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIK-----AYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe-----~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|++     +.|.||   .+..|++.|+++..++.++|.+..++|+.
T Consensus       146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd  201 (234)
T 2br9_A          146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  201 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4578889999984     588888   45668999999989999999888888775

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=88.99  E-value=0.92  Score=39.02  Aligned_cols=48  Identities=21%  Similarity=0.196  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIK-----AYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe-----~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|++     +.|.||   .+..|++.|+++..++.++|.+..++|++
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd  204 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5678899999875     578888   45668999999999999999888877764

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=88.83  E-value=0.95  Score=39.47  Aligned_cols=48  Identities=19%  Similarity=0.149  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHH----HCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIK----AYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe----~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|++    +.|.||   .+..|++.|+++..++.++|.+..++|+.
T Consensus       172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  226 (260)
T 2npm_A          172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE  226 (260)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4578899999986    477788   46678999999989999999998888875

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=88.43  E-value=1.1  Score=38.91  Aligned_cols=48  Identities=25%  Similarity=0.225  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIK-----AYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe-----~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|++     +.|.||   .+..|++.|+++..++.++|....++|+.
T Consensus       147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd  202 (248)
T 3uzd_A          147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD  202 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4678899999875     578888   45668999999999999999888777764

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=88.25  E-value=1.1  Score=39.07  Aligned_cols=48  Identities=21%  Similarity=0.163  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIK-----AYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe-----~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|++     +.|.||   .+..|++.|+++..++.++|....++|+.
T Consensus       151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  206 (260)
T 1o9d_A          151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  206 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4578999999984     588898   46678999999999999999888888774

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=87.73  E-value=5.9  Score=33.31  Aligned_cols=66  Identities=17%  Similarity=0.152  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH--H---------------hCCCCHHHHH-HHHHHHHHHcCChHHHHHHHHH
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAI--L---------------AKPGDGNVLS-MYGDLIWINHKDAPRAKSYFDR  215 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL--~---------------ldP~da~al~-~lG~ll~~~~gd~eeA~~~fer  215 (224)
                      ....+--+.++. ...|+.+|+.+++..|  +               +||.|.+... .+|.++ .+.++.+||+.+|.+
T Consensus        62 ~Ts~YYk~LCy~-klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ll-tq~g~r~EaI~y~~~  139 (242)
T 3kae_A           62 CTSKYYESLCYK-KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLC-TLSGYREEGIGHYVR  139 (242)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHH-HHhcCHHHhhhHhhh
Confidence            333333344444 6899999999999999  2               3456666544 566654 557899999999999


Q ss_pred             HHHhCC
Q 027404          216 AVHSAP  221 (224)
Q Consensus       216 AL~l~P  221 (224)
                      ...+.|
T Consensus       140 Sf~~~~  145 (242)
T 3kae_A          140 SFGKSF  145 (242)
T ss_dssp             HHHHCC
T ss_pred             hcCCcc
Confidence            988776

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.43  E-value=3.1  Score=34.11  Aligned_cols=43  Identities=9%  Similarity=0.006  Sum_probs=35.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAI  182 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL  182 (224)
                      |+++.|.+..+..     ++...|..+|.... .+|+++-|++||.++=
T Consensus        19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           19 GNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQH   61 (177)
T ss_dssp             TCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHhC
Confidence            6777777776554     77899999999887 6999999999998763

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=87.37  E-value=1.5  Score=38.21  Aligned_cols=48  Identities=21%  Similarity=0.149  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIK-----AYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe-----~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|++     +.|.||   .+..|++.|+++..++.++|.+..++|++
T Consensus       172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd  227 (261)
T 3ubw_A          172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  227 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4678889999874     578888   45668999999989999999888887764

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=85.53  E-value=4.9  Score=34.31  Aligned_cols=49  Identities=14%  Similarity=-0.014  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404          136 SESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA  184 (224)
Q Consensus       136 ~e~A~~~yerALe~-----dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l  184 (224)
                      .+.|..+|+.|+++     .|.||   .+..|++.|+++..++.++|....++|+++
T Consensus       141 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~  197 (227)
T 2o8p_A          141 LEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI  197 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            78999999999863     55565   678899999999999999999999999874

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=85.39  E-value=1.1  Score=39.21  Aligned_cols=49  Identities=24%  Similarity=0.460  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHH-----H--CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027404          136 SESMDVYYQEMIK-----A--YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA  184 (224)
Q Consensus       136 ~e~A~~~yerALe-----~--dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l  184 (224)
                      .+.|..+|++|++     +  .|.||   .+..|++.|+++..++.++|.+..++|++-
T Consensus       168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4678899999875     4  68888   456689999999899999999999999875

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=84.60  E-value=2  Score=42.59  Aligned_cols=48  Identities=10%  Similarity=-0.119  Sum_probs=43.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRA  181 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erA  181 (224)
                      +++++-|..+.++|+..-|.+...|+.||.+|. ..||++.|+-.+.-+
T Consensus       350 K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi-~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          350 RGDYELALGVSNTSTELALDSFESWYNLARCHI-KKEEYEKALFAINSM  397 (754)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred             cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHH-HhccHHHHHHHHhcC
Confidence            489999999999999999999999999999987 699999999755544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.31  E-value=3.6  Score=37.29  Aligned_cols=84  Identities=12%  Similarity=0.057  Sum_probs=56.3

Q ss_pred             CCHHHHHHHHHHHHHHCCC--C-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH----HHHHHHHHHHcC
Q 027404          134 KESESMDVYYQEMIKAYPE--D-ALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVL----SMYGDLIWINHK  204 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~--n-a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l--dP~da~al----~~lG~ll~~~~g  204 (224)
                      |+++.|.++|.++......  + .+++.....+.. ..+|+..|..++.+|-.+  ...|....    ...|.+++ ..+
T Consensus       145 Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l-~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l-~~r  222 (429)
T 4b4t_R          145 GDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF-FYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCL-AVR  222 (429)
T ss_dssp             CCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGG-GTS
T ss_pred             CCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHH-HhC
Confidence            6778899999999876433  3 256666666655 479999999999998754  22233322    12333333 357


Q ss_pred             ChHHHHHHHHHHHHh
Q 027404          205 DAPRAKSYFDRAVHS  219 (224)
Q Consensus       205 d~eeA~~~ferAL~l  219 (224)
                      +|.+|..+|-.++..
T Consensus       223 ~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          223 NFKEAAKLLVDSLAT  237 (429)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcc
Confidence            899999999877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.002

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 46.6 bits (110), Expect = 6e-07
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL 192
           G+  ++++    E IKA P+DA + +++ + L    GDF +A+E   ++I   P      
Sbjct: 10  GQLQQALE-LLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGA 67

Query: 193 SMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW 224
           S    L+         A+      V    ++ 
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEEL 99

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 1/83 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           +  ++ +  P++  VL   +    +      ++  +   AI   P      S  G++   
Sbjct: 21  HCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79

Query: 202 NHKDAPRAKSYFDRAVHSAPDDW 224
             +     + Y            
Sbjct: 80  RGQLQEAIEHYRHALRLKPDFID 102

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-------GNVLSM 194
            Y++ ++ +PE A   +N A  L++  G   +A  +   AI   P         GN L  
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

Query: 195 YGD 197
             D
Sbjct: 386 MQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDW 224
            GDF  AE +C +    +P +  VL +    I    +   R+  +   A+   P   
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLA 67

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190
           + G  +E+ D  Y   ++  P  A  L N A   +E +G+  +A     +A+   P    
Sbjct: 283 EKGSVAEAED-CYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAA 340

Query: 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
             S     +         A  ++  A+  +P  
Sbjct: 341 AHSNLAS-VLQQQGKLQEALMHYKEAIRISPTF 372

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 9/85 (10%), Positives = 20/85 (23%), Gaps = 3/85 (3%)

Query: 142 YYQEMIKAYPEDALVLANY--AKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG-DL 198
            +Q    A          Y           D  K        +     +     ++   +
Sbjct: 21  KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80

Query: 199 IWINHKDAPRAKSYFDRAVHSAPDD 223
                K+  +A  Y    + + P +
Sbjct: 81  GNYRLKEYEKALKYVRGLLQTEPQN 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.63
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.57
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.56
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.55
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.48
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.43
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.39
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.39
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.38
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.37
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.35
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.33
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.3
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.29
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.24
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.14
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.11
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.05
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.05
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.05
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.04
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.99
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.97
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.95
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.9
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.85
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.77
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.76
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.73
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.61
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.54
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.53
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.51
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.5
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.47
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.34
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.32
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.31
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.22
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.1
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.09
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.0
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.93
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.79
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.66
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	91.68
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	90.62
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	90.11
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	84.3

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.1e-16  Score=115.90  Aligned_cols=88  Identities=19%  Similarity=0.233  Sum_probs=83.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++||+.+|.++.+|.++|.++. .+|++++|+.+|++||.++|+++.+|.++|.++.. .+++++|+.+|
T Consensus        17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~~~~~~A~~~~   94 (117)
T d1elwa_          17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEEAKRTY   94 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHH-ccCHHHHHHHH
Confidence            79999999999999999999999999999987 69999999999999999999999999999998765 57999999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|++
T Consensus        95 ~~a~~~~p~~  104 (117)
T d1elwa_          95 EEGLKHEANN  104 (117)
T ss_dssp             HHHHTTCTTC
T ss_pred             HHHHHhCCCC
Confidence            9999999986

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.9e-16  Score=123.79  Aligned_cols=89  Identities=18%  Similarity=0.111  Sum_probs=83.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|++||+++|+++.+|.++|.++. ..|++++|+.+|++||.++|+++.+|.++|.++.. .+++++|+.+
T Consensus        17 ~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~~~~~A~~~   94 (201)
T d2c2la1          17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIAN   94 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            379999999999999999999999999999987 79999999999999999999999999999999876 5789999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++|+.++|++
T Consensus        95 ~~~al~l~p~~  105 (201)
T d2c2la1          95 LQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHhCccc
Confidence            99999998853

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-15  Score=117.10  Aligned_cols=89  Identities=17%  Similarity=0.067  Sum_probs=84.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++||+++|++..+|..+|.++.. .|++++|+.+
T Consensus        23 ~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g~~~eA~~~  100 (159)
T d1a17a_          23 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRD  100 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cCCHHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cCCHHHHHHH
Confidence            379999999999999999999999999999987 69999999999999999999999999999998765 6899999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |+++++++|++
T Consensus       101 ~~~a~~~~p~~  111 (159)
T d1a17a_         101 YETVVKVKPHD  111 (159)
T ss_dssp             HHHHHHHSTTC
T ss_pred             HHHHHHcCCCC
Confidence            99999999986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.5e-14  Score=117.47  Aligned_cols=88  Identities=14%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |++++|+.+|++||+++|+++.+|+++|.++. .+|++++|+.+|++|++++|+++.++.++|.+++. .|++++|+.+|
T Consensus        51 g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~  128 (259)
T d1xnfa_          51 GLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDL  128 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-HhhHHHHHHHH
Confidence            69999999999999999999999999999987 69999999999999999999999999999998866 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++++|++
T Consensus       129 ~~al~~~p~~  138 (259)
T d1xnfa_         129 LAFYQDDPND  138 (259)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHhhcccc
Confidence            9999999975

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.56  E-value=1e-14  Score=114.02  Aligned_cols=90  Identities=21%  Similarity=0.216  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---------IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH-  203 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e---------~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~-  203 (224)
                      +.+++|+..|++||+++|+|+.+++++|.++..         ..+++++|+++|++||+++|+++.+|+++|.++..+. 
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence            458899999999999999999999999998862         2355689999999999999999999999999886532 


Q ss_pred             ---------CChHHHHHHHHHHHHhCCCC
Q 027404          204 ---------KDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       204 ---------gd~eeA~~~ferAL~l~P~d  223 (224)
                               +.+++|+.+|++|+.++|++
T Consensus        91 ~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          91 LTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             chhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence                     34799999999999999986

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.3e-15  Score=114.47  Aligned_cols=89  Identities=12%  Similarity=0.077  Sum_probs=78.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAILAKPGD--GNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e--~~Gd~eeAe~~~erAL~ldP~d--a~al~~lG~ll~~~~gd~eeA  209 (224)
                      +++++|++.|++||.++|+++.+++|||+++..  ..+++++|+.+|++++..+|++  ..+|+++|.++.. .|++++|
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~-~g~~~~A   91 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-HhhhHHH
Confidence            578999999999999999999999999998852  1346678999999999998866  4589999998876 5899999


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      +.+|+++++++|++
T Consensus        92 ~~~~~~aL~~~P~~  105 (122)
T d1nzna_          92 LKYVRGLLQTEPQN  105 (122)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCcCC
Confidence            99999999999986

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.52  E-value=5e-14  Score=104.93  Aligned_cols=83  Identities=11%  Similarity=-0.067  Sum_probs=78.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+.+|++||+.+|+++.+|.++|.++. ..+++++|+.+|++||+++|+++.+|..+|.++.. .|++++|+++
T Consensus        29 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~g~~~~A~~~  106 (112)
T d1hxia_          29 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALAS  106 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HhhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHH-CCCHHHHHHH
Confidence            378999999999999999999999999999986 79999999999999999999999999999998876 4789999999


Q ss_pred             HHHHH
Q 027404          213 FDRAV  217 (224)
Q Consensus       213 ferAL  217 (224)
                      |+++|
T Consensus       107 l~~~l  111 (112)
T d1hxia_         107 LRAWL  111 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.3e-13  Score=115.31  Aligned_cols=88  Identities=16%  Similarity=0.058  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++++..+|+++.+|+++|.++. .+|++++|+++|++|++++|+++.+|.++|.++.. .|++++|+.+|
T Consensus       186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~  263 (323)
T d1fcha_         186 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAVEHF  263 (323)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             HHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            68999999999999999999999999999987 69999999999999999999999999999998876 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|++
T Consensus       264 ~~al~l~p~~  273 (323)
T d1fcha_         264 LEALNMQRKS  273 (323)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHhCCcC
Confidence            9999999975

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.6e-14  Score=105.80  Aligned_cols=88  Identities=16%  Similarity=0.264  Sum_probs=77.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHcCC
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV-------LSMYGDLIWINHKD  205 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~a-------l~~lG~ll~~~~gd  205 (224)
                      .++|++|+.+|.+||+++|+++.++.++|.++. .+|++++|+++|++||.++|++..+       +..+|.++.. .++
T Consensus        17 ~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-~~~   94 (128)
T d1elra_          17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEK   94 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TTC
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH-hCC
Confidence            379999999999999999999999999999988 6999999999999999999988654       4455555544 578


Q ss_pred             hHHHHHHHHHHHHhCCC
Q 027404          206 APRAKSYFDRAVHSAPD  222 (224)
Q Consensus       206 ~eeA~~~ferAL~l~P~  222 (224)
                      +++|+.+|++++..+|+
T Consensus        95 ~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          95 YKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999998774

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.9e-13  Score=104.93  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA---------------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na---------------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      +++++|+.+|++||+..|...               .++.|+|.++. .+|++++|+.+|++||+++|+++.++..+|.+
T Consensus        27 ~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  105 (170)
T d1p5qa1          27 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEA  105 (170)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhccccchhhhHHHHHH
Confidence            689999999999999988652               56678998887 69999999999999999999999999999998


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          199 IWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       199 l~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.. .|++++|+.+|++|++++|++
T Consensus       106 ~~~-~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1         106 HLA-VNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHH-hhhHHHHHHHHHHHHHhCCCC
Confidence            876 578999999999999999986

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=7.8e-13  Score=103.98  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA----------------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~----------------dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~  197 (224)
                      +++++|+.+|++||+.                +|.++.++.|+|.++. ..|++++|+.+|++||+++|+++.+|..+|.
T Consensus        41 ~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~  119 (169)
T d1ihga1          41 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  119 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhHHHhHHH
Confidence            6899999999999864                5677888999999887 6999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          198 LIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++.. .+++++|+..|++|++++|++
T Consensus       120 ~~~~-l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1         120 GWQG-LKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            9876 578999999999999999986

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.39  E-value=2.7e-12  Score=100.14  Aligned_cols=88  Identities=17%  Similarity=0.137  Sum_probs=79.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA----------------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na----------------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~  197 (224)
                      +++.+|+..|++||..-|...                .++.|+|.+++ .+|++++|+.+|++||+++|++..+|+.+|.
T Consensus        31 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~  109 (153)
T d2fbna1          31 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGV  109 (153)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-HhcccchhhhhhhccccccchhhhhhHHhHH
Confidence            699999999999998766443                36778999887 6999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          198 LIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++..+ |++++|+.+|++|++++|++
T Consensus       110 ~~~~l-g~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1         110 ANMYF-GFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHHHH-TCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHc-CCHHHHHHHHHHHHHhCCCC
Confidence            98775 78999999999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.3e-12  Score=105.70  Aligned_cols=88  Identities=15%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|++|++++|+++.+|..+|.++.. .|++++|+.+|
T Consensus        13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~-~g~~~~A~~~~   90 (388)
T d1w3ba_          13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE-RGQLQEAIEHY   90 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhh-hcccccccccc
Confidence            68999999999999999999999999999987 69999999999999999999999999999998876 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      +++++.+|.+
T Consensus        91 ~~~~~~~~~~  100 (388)
T d1w3ba_          91 RHALRLKPDF  100 (388)
T ss_dssp             HHHHHHCTTC
T ss_pred             cccccccccc
Confidence            9999998864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.9e-12  Score=107.01  Aligned_cols=88  Identities=9%  Similarity=0.012  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      |++++|+.+|++||+.+|+++.+|+++|.++. .+|++++|+.+|++|++++|+++.++..+|.++.. .+++++|+.+|
T Consensus        33 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~  110 (323)
T d1fcha_          33 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQRQACEIL  110 (323)
T ss_dssp             TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHhhhccccccccccccccccccc-cccccccccch
Confidence            79999999999999999999999999999887 69999999999999999999999999999998866 57899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++++.++|+.
T Consensus       111 ~~~~~~~~~~  120 (323)
T d1fcha_         111 RDWLRYTPAY  120 (323)
T ss_dssp             HHHHHTSTTT
T ss_pred             hhHHHhccch
Confidence            9999999864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.5e-12  Score=104.01  Aligned_cols=86  Identities=13%  Similarity=0.031  Sum_probs=77.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      .+++++|+..|.+   +.|.++.+|+|+|.++. .+|++++|+.+|++||+++|+++.+|.++|.+++. .+++++|+..
T Consensus        18 ~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g~~~~A~~~   92 (192)
T d1hh8a_          18 KKDWKGALDAFSA---VQDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKD   92 (192)
T ss_dssp             TTCHHHHHHHHHT---SSSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             CCCHHHHHHHHHh---cCCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hccHHHHHHH
Confidence            3689999999986   46778999999999987 69999999999999999999999999999998876 5799999999


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++|+...|.+
T Consensus        93 ~~kAl~~~~~n  103 (192)
T d1hh8a_          93 LKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHTTTTC
T ss_pred             HHHHHHhCccC
Confidence            99999876653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-12  Score=106.99  Aligned_cols=87  Identities=16%  Similarity=0.189  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHH
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~fe  214 (224)
                      ++++|+.+|++++...|.++.++..++.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+.+|+
T Consensus       286 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~  363 (388)
T d1w3ba_         286 SVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYK  363 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCHHHHHHHH
T ss_pred             CHHHHHHHHHhhhccCCccchhhhHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            3444444444444444444444444454444 46777888888888888888888888888877654 567888888888


Q ss_pred             HHHHhCCCC
Q 027404          215 RAVHSAPDD  223 (224)
Q Consensus       215 rAL~l~P~d  223 (224)
                      +|++++|++
T Consensus       364 ~al~l~P~~  372 (388)
T d1w3ba_         364 EAIRISPTF  372 (388)
T ss_dssp             HHHTTCTTC
T ss_pred             HHHHhCCCC
Confidence            888888875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.6e-12  Score=109.99  Aligned_cols=89  Identities=15%  Similarity=0.155  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +.+++|+.+|++||++||.+..+|++.|.++....+++++|+.+|++||+++|++..+|.++|.++.. .+++++|+.+|
T Consensus        57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l~~~~eAl~~~  135 (315)
T d2h6fa1          57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQELEFI  135 (315)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHH
T ss_pred             CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-hccHHHHHHHH
Confidence            46688888888888888888888888888776323358888888888888888888888888877655 46788888888


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|++
T Consensus       136 ~kal~~dp~n  145 (315)
T d2h6fa1         136 ADILNQDAKN  145 (315)
T ss_dssp             HHHHHHCTTC
T ss_pred             hhhhhhhhcc
Confidence            8888888875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.9e-12  Score=109.11  Aligned_cols=88  Identities=13%  Similarity=0.067  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      .++++|+.+|+++|+.+|++..+|+++|.++. .+|++++|+.+|++||+++|++..+|.++|.++... +++++|+.+|
T Consensus        92 ~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~-~~~~~Al~~~  169 (315)
T d2h6fa1          92 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNELQYV  169 (315)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            57899999999999999999999999999886 699999999999999999999999999999988764 7899999999


Q ss_pred             HHHHHhCCCC
Q 027404          214 DRAVHSAPDD  223 (224)
Q Consensus       214 erAL~l~P~d  223 (224)
                      ++|++++|.+
T Consensus       170 ~~al~~~p~n  179 (315)
T d2h6fa1         170 DQLLKEDVRN  179 (315)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHHCCcc
Confidence            9999999976

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.30  E-value=1.2e-11  Score=97.40  Aligned_cols=88  Identities=16%  Similarity=0.236  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED---------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n---------------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      +++.+|+.+|++||..-|..               ..++.|+|.++. ..+++++|+.+|++||.++|++..+++.+|.+
T Consensus        29 ~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~  107 (168)
T d1kt1a1          29 GKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEA  107 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHHHHHHHHH
Confidence            68999999999999765443               245778998887 69999999999999999999999999999998


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          199 IWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       199 l~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +.. .+++++|+..|++|+.++|++
T Consensus       108 ~~~-l~~~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1         108 QLL-MNEFESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHH-cCCHHHHHHHHHHHHHhCCCC
Confidence            876 578999999999999999986

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.9e-11  Score=98.77  Aligned_cols=87  Identities=11%  Similarity=0.046  Sum_probs=78.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----------------GNVLSMYGD  197 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d----------------a~al~~lG~  197 (224)
                      +++++|+.+|++||++||+++.+|+++|.++. .+|++++|+.+|++|+...|.+                +.+++++|.
T Consensus        50 g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~  128 (192)
T d1hh8a_          50 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  128 (192)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH-hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence            79999999999999999999999999999987 6999999999999999876643                477889998


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          198 LIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       198 ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      ++.. .+++++|++.|++|+++.|+
T Consensus       129 ~~~~-~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         129 MYAK-KEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHH-CCCHHHHHHHHHHHHhcCCC
Confidence            7765 67899999999999999886

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.4e-11  Score=99.48  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHH
Q 027404          134 KESESMDVYYQEMIKA----YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (224)
Q Consensus       134 ~d~e~A~~~yerALe~----dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA  209 (224)
                      .+.+.|+..+++++..    +|..+.+++++|.++. ..|++++|+.+|++||.++|+++.+|.++|.++.. .|++++|
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~-~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~~~A   90 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAA   90 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHHHHh
Confidence            4677888899999875    3445679999999987 69999999999999999999999999999998865 6899999


Q ss_pred             HHHHHHHHHhCCCC
Q 027404          210 KSYFDRAVHSAPDD  223 (224)
Q Consensus       210 ~~~ferAL~l~P~d  223 (224)
                      +.+|++|++++|++
T Consensus        91 ~~~~~~al~~~p~~  104 (259)
T d1xnfa_          91 YEAFDSVLELDPTY  104 (259)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             hhhhhHHHHHHhhh
Confidence            99999999999986

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.14  E-value=3.9e-11  Score=93.15  Aligned_cols=87  Identities=13%  Similarity=-0.030  Sum_probs=74.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------CHH
Q 027404          134 KESESMDVYYQEMIKAYPED------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-----------DGN  190 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n------------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~-----------da~  190 (224)
                      ++|++|+..|++||+++|+.            +.++.|+|.++. ..|++++|+.+|++||.+.|.           ...
T Consensus        23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  101 (156)
T d2hr2a1          23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS  101 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhcccccccccccccchhHH
Confidence            68999999999999999875            367889999987 699999999999999987542           244


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 027404          191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (224)
Q Consensus       191 al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~  222 (224)
                      +++++|.++.. .|++++|+.+|++|+++.|.
T Consensus       102 a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1         102 AVYSRALALDG-LGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHH
Confidence            67889988766 57899999999999998764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.8e-10  Score=83.17  Aligned_cols=64  Identities=13%  Similarity=0.135  Sum_probs=58.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED-------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n-------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      +++.+|+.+|++|+++.|.+       +.++.++|.+++ ..|++++|+.+|++||+++|+++.++.+++.+
T Consensus        19 g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~   89 (95)
T d1tjca_          19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKYF   89 (95)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            79999999999999997665       689999999988 69999999999999999999999999998754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.05  E-value=7.8e-10  Score=94.41  Aligned_cols=91  Identities=22%  Similarity=0.185  Sum_probs=81.6

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----------
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW-----------  200 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~-----------  200 (224)
                      ..|++++|+.+|+++|+.+|+|+.++.+|+.+++ ..|++++|+++|+++++++|++..++..|+.++.           
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            3579999999999999999999999999999998 6999999999999999999999999888876542           


Q ss_pred             -----------------------HHcCChHHHHHHHHHHHHhCCCC
Q 027404          201 -----------------------INHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       201 -----------------------~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                                             ...|++++|++.+++++++.|+.
T Consensus        87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                                   12479999999999999999974

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.8e-10  Score=80.88  Aligned_cols=69  Identities=14%  Similarity=0.142  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-------GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d-------a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .++-++++|.+++ .+|++.+|+.+|++|+++.|.+       +.++.++|.+++. .|++++|+.+|++||+++|++
T Consensus         4 saddc~~lG~~~~-~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~   79 (95)
T d1tjca_           4 TAEDSFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEH   79 (95)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCC
Confidence            3567889999998 6999999999999999986654       6789999998876 579999999999999999986

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=4.6e-10  Score=87.44  Aligned_cols=69  Identities=17%  Similarity=0.090  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       153 na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ++..+...|..++ ..|++++|+.+|++||+++|+++.+|.++|.++.. .+++++|+.+|++|++++|++
T Consensus         3 ~a~~l~~~Gn~~~-~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~   71 (201)
T d2c2la1           3 SAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQS   71 (201)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTC
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCc
Confidence            4677888999998 69999999999999999999999999999998866 579999999999999999986

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=9.1e-10  Score=86.81  Aligned_cols=67  Identities=7%  Similarity=-0.047  Sum_probs=63.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~  201 (224)
                      +++++|+.+|++||+++|+++.+++.+|.++. .+|++++|+.+|++|++++|+++.+...++.+...
T Consensus        76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             hhcccccchhhhhhhccccchhhhHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999999999999988 69999999999999999999999999999887644

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.9e-09  Score=83.16  Aligned_cols=80  Identities=16%  Similarity=-0.059  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN-HKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~-~gd~eeA~~~  212 (224)
                      +++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++++.++|++..++..++.+.... .+.+++|+..
T Consensus        58 ~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~-~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          58 ECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHcccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            79999999999999999999999999999988 699999999999999999999999988887654321 2346667655


Q ss_pred             HH
Q 027404          213 FD  214 (224)
Q Consensus       213 fe  214 (224)
                      .+
T Consensus       137 ~~  138 (159)
T d1a17a_         137 DE  138 (159)
T ss_dssp             HH
T ss_pred             cH
Confidence            44

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-09  Score=81.10  Aligned_cols=64  Identities=8%  Similarity=0.016  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      +++++|+.+|.+||+++|+++.+|+++|.++. .+|++++|+.+|++|++++|+++.++..++.+
T Consensus        51 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          51 GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             ccccccchhhhhHHHhccchhhHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            78999999999999999999999999999987 79999999999999999999999999888765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.99  E-value=1.5e-09  Score=80.09  Aligned_cols=67  Identities=10%  Similarity=-0.054  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       155 ~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ..++++|..+. .+|++++|+.+|++||+++|+++.+|..+|.++.. .+++++|+.+|++|++++|++
T Consensus        17 ~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          17 ENPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             SCHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHH-HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhccccccccccccc
Confidence            34577888877 69999999999999999999999999999998765 679999999999999999986

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=8.3e-10  Score=83.16  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       154 a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      +..+-++|..++ ..|++++|+.+|++||+++|+++.++.++|.++..+ +++++|+.+|++||.++|++
T Consensus         4 a~~~k~~G~~~~-~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           4 ALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHc-CchHHHHHHHHHHHHhCccc
Confidence            355678999988 699999999999999999999999999999998764 78999999999999998864

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.97  E-value=1.8e-09  Score=84.56  Aligned_cols=84  Identities=7%  Similarity=-0.008  Sum_probs=69.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      +++++|+.+|++||+++|++..+++++|.++. ..|++++|+.+|++|+.++|+++.++..++.+.......-+.....|
T Consensus        78 ~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~  156 (168)
T d1kt1a1          78 REYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTY  156 (168)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhcccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            79999999999999999999999999999987 69999999999999999999999999988877644332223444454


Q ss_pred             HHHHH
Q 027404          214 DRAVH  218 (224)
Q Consensus       214 erAL~  218 (224)
                      .+.++
T Consensus       157 ~~~f~  161 (168)
T d1kt1a1         157 ANMFK  161 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.95  E-value=2.1e-09  Score=83.85  Aligned_cols=67  Identities=12%  Similarity=-0.015  Sum_probs=62.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~  201 (224)
                      +++++|+.+|.+||+++|+++.+|+++|.++. ..|++++|+++|++|++++|++..++..+..+...
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  157 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            69999999999999999999999999999997 69999999999999999999999999888876543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.90  E-value=4.6e-09  Score=81.26  Aligned_cols=65  Identities=14%  Similarity=0.039  Sum_probs=61.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI  199 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll  199 (224)
                      +++++|+.+|++||+++|.+..+|+++|.++. .+|++++|+.+|++|++++|++..+...+..+.
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccccchhhhhhHHhHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            68999999999999999999999999999998 699999999999999999999999998887664

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=1.1e-08  Score=82.09  Aligned_cols=84  Identities=8%  Similarity=0.010  Sum_probs=74.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDA----------------------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN  190 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na----------------------~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~  190 (224)
                      .|++++|..+|.+||++.++++                      .++.+++.++. ..|++++|+.+++++|+++|.+..
T Consensus        24 ~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g~~~~Al~~~~~al~~~P~~e~  102 (179)
T d2ff4a2          24 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREP  102 (179)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHhCCccHH
Confidence            3789999999999999987663                      46778888887 699999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 027404          191 VLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (224)
Q Consensus       191 al~~lG~ll~~~~gd~eeA~~~ferAL~  218 (224)
                      +|..++.+++. .|++.+|+..|+++.+
T Consensus       103 ~~~~l~~al~~-~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2         103 LWTQLITAYYL-SDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hcCHHHHHHHHHHHHH
Confidence            99999998865 6899999999999854

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=1.1e-08  Score=78.96  Aligned_cols=64  Identities=11%  Similarity=0.111  Sum_probs=56.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-----------DFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G-----------d~eeAe~~~erAL~ldP~da~al~~lG~l  198 (224)
                      +.+++|+.+|++||+++|+++.+++++|.++.. +|           ++++|+++|++||+++|++..++..++..
T Consensus        55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~-~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH-cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            457899999999999999999999999998863 43           46899999999999999999998887754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=1.3e-08  Score=85.91  Aligned_cols=89  Identities=8%  Similarity=0.048  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~G--d~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      +.+++|+.+|+++|+.+|.++.+|+.+|.++. ..+  ++++|+.++++++.++|.+..++..+...++...+.+++|+.
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH-HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH
Confidence            46789999999999999999999999998876 344  589999999999999999999876443334455688999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      +++++++++|++
T Consensus       166 ~~~~~i~~~p~~  177 (334)
T d1dcea1         166 FTDSLITRNFSN  177 (334)
T ss_dssp             HHHTTTTTTCCC
T ss_pred             HHHHHHHcCCCC
Confidence            999999999986

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.6e-09  Score=95.60  Aligned_cols=88  Identities=14%  Similarity=0.094  Sum_probs=69.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHH
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~  211 (224)
                      ..++.++|...|++++..+|.  .++.++|.++. .++++++|+.+|++|++++|+++.+++++|.++.. .+++.+|+.
T Consensus       132 ~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~~~~~A~~  207 (497)
T d1ya0a1         132 KQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIF  207 (497)
T ss_dssp             -----------CCHHHHHHHH--HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             hCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cCCHHHHHH
Confidence            346789999999999998874  67888999887 69999999999999999999999999999988765 689999999


Q ss_pred             HHHHHHHhCCCC
Q 027404          212 YFDRAVHSAPDD  223 (224)
Q Consensus       212 ~ferAL~l~P~d  223 (224)
                      +|.||+.++|..
T Consensus       208 ~y~ral~~~~~~  219 (497)
T d1ya0a1         208 YYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHHSSSBCC
T ss_pred             HHHHHHhCCCCC
Confidence            999999998864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.8e-09  Score=79.40  Aligned_cols=65  Identities=11%  Similarity=0.028  Sum_probs=57.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI  199 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n--a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll  199 (224)
                      +++++|+.+|+++|+.+|.+  +.+++++|.+++ ..|++++|+++|++||+++|++..++...+.+.
T Consensus        50 ~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~-~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          50 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            46788999999999999876  469999999987 699999999999999999999999998777554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=5.6e-08  Score=81.93  Aligned_cols=89  Identities=11%  Similarity=0.018  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-C
Q 027404          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKE---------IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH-K  204 (224)
Q Consensus       135 d~e~A~~~yerALe~dP~na~~l~nlA~~l~e---------~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~-g  204 (224)
                      ..++|..+|+++|+.+|+++.+|...+.++..         ..+++++|+.+|+++++.+|+++.+|..+|.++.... .
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            34899999999999999999999887766542         1344789999999999999999999999998776543 3


Q ss_pred             ChHHHHHHHHHHHHhCCCC
Q 027404          205 DAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       205 d~eeA~~~ferAL~l~P~d  223 (224)
                      ++++|+.++++++.++|.+
T Consensus       124 ~~~~a~~~~~~al~~~~~~  142 (334)
T d1dcea1         124 NWARELELCARFLEADERN  142 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHHhhCchh
Confidence            5899999999999999975

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=8.3e-08  Score=80.76  Aligned_cols=87  Identities=11%  Similarity=0.018  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~f  213 (224)
                      ++++.|...|++|++..|.+..++..+|.+.+...++.+.|..+|++++...|+++.+|..|+.++.. .|++++|..+|
T Consensus       148 ~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g~~~~aR~~f  226 (308)
T d2onda1         148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLF  226 (308)
T ss_dssp             HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cCChHHHHHHH
Confidence            45667777777777777777777777665544345677777777777777777777777777666543 46677777777


Q ss_pred             HHHHHhCC
Q 027404          214 DRAVHSAP  221 (224)
Q Consensus       214 erAL~l~P  221 (224)
                      ++|++..|
T Consensus       227 e~ai~~~~  234 (308)
T d2onda1         227 ERVLTSGS  234 (308)
T ss_dssp             HHHHHSSS
T ss_pred             HHHHHhCC
Confidence            77777554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=7.8e-08  Score=80.42  Aligned_cols=87  Identities=17%  Similarity=0.079  Sum_probs=71.3

Q ss_pred             CCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAY------PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~d------P~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~  201 (224)
                      +++++|..+|.+|+++.      +.-+.++.++|.++. .+|++++|+++|++|+++.+..      ..++..+|.++..
T Consensus        51 ~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (290)
T d1qqea_          51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (290)
T ss_dssp             TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh
Confidence            68899999999999973      223478899999887 6999999999999999986655      5567778877655


Q ss_pred             HcCChHHHHHHHHHHHHhCC
Q 027404          202 NHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~P  221 (224)
                      ..+++++|+.+|++|+.+.+
T Consensus       130 ~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         130 DLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999988743

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=3.2e-07  Score=73.74  Aligned_cols=87  Identities=7%  Similarity=0.062  Sum_probs=71.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 027404          133 GKESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na-----~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~d------a~al~~lG~ll~~  201 (224)
                      .|++++|+.+|++||+..|.+.     .++.++|.++. .+|++++|+.+|++|+.+.|..      ..++..++.++..
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            4799999999999999999873     57888999887 6999999999999999876543      2345566666654


Q ss_pred             HcCChHHHHHHHHHHHHhCC
Q 027404          202 NHKDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~P  221 (224)
                       .+++.+|+..+.+++.+.+
T Consensus       104 -~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_         104 -QGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             -TTCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHhH
Confidence             5899999999999987643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=2e-07  Score=78.40  Aligned_cols=89  Identities=17%  Similarity=0.146  Sum_probs=61.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~  212 (224)
                      +++++|...|+++|+..|.+. .+|..|+.++. ..+++++|+++|++|++..|.....+..++.+.+...++.+.|..+
T Consensus       113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            566777777777777777664 45667776665 5677777777777777777777777766665544445667777777


Q ss_pred             HHHHHHhCCCC
Q 027404          213 FDRAVHSAPDD  223 (224)
Q Consensus       213 ferAL~l~P~d  223 (224)
                      |++++...|++
T Consensus       192 ~e~~l~~~p~~  202 (308)
T d2onda1         192 FELGLKKYGDI  202 (308)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHhhhhh
Confidence            77777776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=1.8e-07  Score=78.13  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG------DGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n------a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~------da~al~~lG~ll~~  201 (224)
                      +++++|+.+|++|+++.+.+      ..++.++|.++....+++++|+++|++|+++.+.      ...++.++|.++..
T Consensus        91 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~  170 (290)
T d1qqea_          91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL  170 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Confidence            68999999999999986666      5788888887753469999999999999987443      24557888988766


Q ss_pred             HcCChHHHHHHHHHHHHhCCCC
Q 027404          202 NHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       202 ~~gd~eeA~~~ferAL~l~P~d  223 (224)
                       .|++++|+.+|++++.+.|.+
T Consensus       171 -~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         171 -DGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             -TTCHHHHHHHHHHHHHTTSSC
T ss_pred             -cChHHHHHHHHHHHHHhCccc
Confidence             579999999999999988764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.5e-07  Score=85.30  Aligned_cols=67  Identities=15%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~  201 (224)
                      +++++|+.+|++|++++|+++.+++++|.++. ..|++.+|+.+|.|||.++|.++.++.+++.++-.
T Consensus       166 ~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~-~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999999999999887 69999999999999999999999999999876643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=7e-07  Score=68.60  Aligned_cols=69  Identities=14%  Similarity=-0.028  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          154 ALVLANYAKFLKE--IRGDFVKAEEYCGRAILAKPGDG-NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       154 a~~l~nlA~~l~e--~~Gd~eeAe~~~erAL~ldP~da-~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      ..+.++||+++..  ...+..+|+.+|+.+++.+|.+. +.|+++|..++. .|+|++|..+++++|+++|++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCc
Confidence            6788888888762  12355689999999998888764 688888888776 468999999999999999876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=4.8e-07  Score=72.63  Aligned_cols=86  Identities=15%  Similarity=0.091  Sum_probs=72.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHc
Q 027404          134 KESESMDVYYQEMIKAYPED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILA------KPGDGNVLSMYGDLIWINH  203 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~n----a~~l~nlA~~l~e~~Gd~eeAe~~~erAL~l------dP~da~al~~lG~ll~~~~  203 (224)
                      +++++|..+|+++++..|.+    ...+.++|.++. ..|++++|+.+|++++..      .|....++..+|.+++. .
T Consensus       227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~  304 (366)
T d1hz4a_         227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI-LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ-A  304 (366)
T ss_dssp             TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-H
T ss_pred             ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH-C
Confidence            68999999999999988776    356778898887 699999999999999854      45566788889998876 5


Q ss_pred             CChHHHHHHHHHHHHhCC
Q 027404          204 KDAPRAKSYFDRAVHSAP  221 (224)
Q Consensus       204 gd~eeA~~~ferAL~l~P  221 (224)
                      |++++|+.+|++|+++.+
T Consensus       305 g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         305 GRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhh
Confidence            799999999999998743

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.31  E-value=5.1e-06  Score=62.05  Aligned_cols=84  Identities=15%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCh
Q 027404          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDA  206 (224)
Q Consensus       133 ~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e---~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~  206 (224)
                      ..+.++|..+|++|.+.  +++.+.+++|.++..   ...|+++|+++|++|.+.  .++.+..+||.++..-   ..++
T Consensus        36 ~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~  111 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE  111 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             ccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCH
Confidence            35889999999999875  789999999987752   135789999999999876  6888999999877541   3589


Q ss_pred             HHHHHHHHHHHHhC
Q 027404          207 PRAKSYFDRAVHSA  220 (224)
Q Consensus       207 eeA~~~ferAL~l~  220 (224)
                      ++|+.||++|.++.
T Consensus       112 ~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         112 KQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
Confidence            99999999998764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=2e-06  Score=65.97  Aligned_cols=62  Identities=10%  Similarity=0.024  Sum_probs=56.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na-~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG  196 (224)
                      .+..+|+.+++.+++.+|.+. ++++++|..++ ..|++++|+++++++|+++|++..++...-
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            578899999999999999875 89999999998 699999999999999999999999976543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.10  E-value=2.6e-06  Score=71.96  Aligned_cols=56  Identities=27%  Similarity=0.325  Sum_probs=52.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 027404          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (224)
Q Consensus       167 ~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~~gd~eeA~~~ferAL~l~P~d  223 (224)
                      .+|++++|+++|+++|+.+|+|+.++..|+.+++. .|++++|+..|+++++++|++
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~   63 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEY   63 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGG
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCc
Confidence            47999999999999999999999999999999876 589999999999999999974

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.09  E-value=5e-06  Score=63.40  Aligned_cols=65  Identities=15%  Similarity=0.083  Sum_probs=53.0

Q ss_pred             HHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 027404          155 LVLANY--AKFLKEIRGDFVKAEEYCGRAILAKPGD------------GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA  220 (224)
Q Consensus       155 ~~l~nl--A~~l~e~~Gd~eeAe~~~erAL~ldP~d------------a~al~~lG~ll~~~~gd~eeA~~~ferAL~l~  220 (224)
                      .++..+  |..++ ..|+|++|+++|++||+++|+.            +.+|.++|.+++. .|++++|+..+++|+++.
T Consensus         8 ~a~~~l~~g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           8 GAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhcc
Confidence            444444  66665 5799999999999999998875            3578899998876 578999999999999875


Q ss_pred             C
Q 027404          221 P  221 (224)
Q Consensus       221 P  221 (224)
                      |
T Consensus        86 ~   86 (156)
T d2hr2a1          86 N   86 (156)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.00  E-value=2.2e-05  Score=63.18  Aligned_cols=86  Identities=13%  Similarity=0.135  Sum_probs=70.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCC
Q 027404          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKD  205 (224)
Q Consensus       132 ~~~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e---~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd  205 (224)
                      ...+...+..+++++.+  +.++.+++++|.++..   ...|+++|+.+|++|.+.  +++.++++||.++..-   .++
T Consensus       158 ~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n  233 (265)
T d1ouva_         158 TPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRN  233 (265)
T ss_dssp             SCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCC
T ss_pred             cccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccC
Confidence            34688899999999875  5789999999988762   146899999999999887  5899999999876531   237


Q ss_pred             hHHHHHHHHHHHHhCC
Q 027404          206 APRAKSYFDRAVHSAP  221 (224)
Q Consensus       206 ~eeA~~~ferAL~l~P  221 (224)
                      +++|+.||++|..+.+
T Consensus       234 ~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         234 EKQAIENFKKGCKLGA  249 (265)
T ss_dssp             STTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCcC
Confidence            9999999999988754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.93  E-value=1.7e-05  Score=59.13  Aligned_cols=80  Identities=19%  Similarity=0.204  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCChHHHH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAPRAK  210 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~eeA~  210 (224)
                      .|+++|+.+|++|.+.  +++.+.++++..   ...++++|+.+|++|.+.  +++.++..+|.++..-   ..|+++|+
T Consensus         7 kd~~~A~~~~~kaa~~--g~~~a~~~l~~~---~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL--NEMFGCLSLVSN---SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHT--TCTTHHHHHHTC---TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHC--CChhhhhhhccc---cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            5899999999999987  477778888753   367999999999999875  6899999999876531   25789999


Q ss_pred             HHHHHHHHhC
Q 027404          211 SYFDRAVHSA  220 (224)
Q Consensus       211 ~~ferAL~l~  220 (224)
                      .+|++|.+..
T Consensus        80 ~~~~~aa~~g   89 (133)
T d1klxa_          80 QYYSKACGLN   89 (133)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHhhhhccC
Confidence            9999998764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.79  E-value=5.7e-05  Score=60.65  Aligned_cols=84  Identities=14%  Similarity=0.247  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCChH
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAP  207 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e---~~Gd~eeAe~~~erAL~ldP~da~al~~lG~ll~~~---~gd~e  207 (224)
                      +++++|+.+|++|.+.  +|+.++++||.++..   ...++..|..+++++...  +++.+...+|.++...   ..+.+
T Consensus        16 ~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~~~~   91 (265)
T d1ouva_          16 KDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTN   91 (265)
T ss_dssp             TCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccccccccccchhhH
Confidence            6899999999999765  689999999998763   256999999999998865  4888888888766431   35789


Q ss_pred             HHHHHHHHHHHhCC
Q 027404          208 RAKSYFDRAVHSAP  221 (224)
Q Consensus       208 eA~~~ferAL~l~P  221 (224)
                      .|..+|++++...+
T Consensus        92 ~a~~~~~~a~~~g~  105 (265)
T d1ouva_          92 KALQYYSKACDLKY  105 (265)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhhhhh
Confidence            99999999988754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.66  E-value=9.2e-05  Score=58.44  Aligned_cols=54  Identities=9%  Similarity=0.038  Sum_probs=49.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCC
Q 027404          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRA-------ILAKPGD  188 (224)
Q Consensus       134 ~d~e~A~~~yerALe~dP~na~~l~nlA~~l~e~~Gd~eeAe~~~erA-------L~ldP~d  188 (224)
                      +++++|+.+++++|+.+|.+..+|.+++.++. ..|++.+|+++|+++       +-+.|..
T Consensus        81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~-~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          81 GRASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             CCchHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            79999999999999999999999999999998 699999999999998       4467753

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.68  E-value=0.21  Score=40.55  Aligned_cols=48  Identities=23%  Similarity=0.205  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIK-----AYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe-----~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|++     +.|.||   .+..||+.|+++..++.++|.+..++|+.
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4579999999885     478888   45568999999999999999999888885

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=90.62  E-value=0.17  Score=41.20  Aligned_cols=48  Identities=23%  Similarity=0.457  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHH-------CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIKA-------YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe~-------dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|+++       .|.||   .+..|++.|+|+..++.++|.+..++|++
T Consensus       123 ~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd  180 (223)
T d3efza1         123 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ  180 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46799999999754       27888   46679999999999999999999888874

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=90.11  E-value=0.37  Score=39.27  Aligned_cols=48  Identities=21%  Similarity=0.163  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027404          136 SESMDVYYQEMIK-----AYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (224)
Q Consensus       136 ~e~A~~~yerALe-----~dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erAL~  183 (224)
                      .+.|..+|++|++     +.|.||   .+..|++.|+++..++.++|.+..++|+.
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5678999999874     478888   45669999999988999999998888875

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=84.30  E-value=1.2  Score=35.80  Aligned_cols=48  Identities=15%  Similarity=0.018  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027404          134 KESESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRA  181 (224)
Q Consensus       134 ~d~e~A~~~yerALe~-----dP~na---~~l~nlA~~l~e~~Gd~eeAe~~~erA  181 (224)
                      +..+.|..+|++|+++     .|.||   .+..|++.|+++..++.++|.+..++|
T Consensus       137 ~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A  192 (220)
T d2o8pa1         137 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSL  192 (220)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3567899999999864     35555   677899999999899999888877666