Citrus Sinensis ID: 027408

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Secondary Structure (PSIPRED)
ccHHHHHHccHHHHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEccccccHHHHHHcccEEcccHHHHHccccEEEEcccccHHHcccccHHHHHccccccEEEEccccccccHHHHHHHHHHcccEEEEEcccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHccHHHHHHHHHcccccHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHccEEEEEccccccHHHHHHcccEEcccHHHHHHHccEEEEcccccccccccEcccHHHHccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccccHHHccccEccccccHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccEEcHHcc
Coil and Loop (DISEMBL)
MRILILVRnflpghhqviSGEWNVAGVAYRaydlegktvgtvgcgrIGKLLLQRlkpfncnllyhdrvkmdpqleketgakfeedldtmlpkcdivvvntpltektrgmfdKDRIAKMKKGVLIVNNARGAIMDTQAVVDACssghiagysgdvwnpqpapkdhpwrympnqamtphvsgttiDAQLRYAAGVKDMLDryfkgedfpvqnYIVKAgelapqyr
Flexible Loop (DISEMBL)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFeedldtmlpkcdivvvntpltektrgmfdkdriakMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKgedfpvqnYIVKAgelapqyr
Low Complexity Region (SEG)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Disordered region (IsUnstruct)
**ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM***********FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP*******PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG*******
Disordered Region (DISOPRED)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG*******
Disordered Region (DISEMBL)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Disordered Region (DISPRO)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP*YR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q07511	381	Formate dehydrogenase, mi	N/A	no	1.0	0.585	0.887	1e-120
Q9SXP2	376	Formate dehydrogenase 1,	yes	no	1.0	0.593	0.860	1e-118
Q67U69	378	Formate dehydrogenase 2,	no	no	1.0	0.589	0.847	1e-117
Q9ZRI8	377	Formate dehydrogenase, mi	N/A	no	1.0	0.591	0.852	1e-116
Q9S7E4	384	Formate dehydrogenase, mi	yes	no	1.0	0.580	0.829	1e-113
Q03134	365	Probable formate dehydrog	yes	no	0.991	0.605	0.535	9e-66
O13437	364	Formate dehydrogenase OS=	N/A	no	0.973	0.596	0.495	6e-59
Q07103	375	Formate dehydrogenase OS=	N/A	no	0.991	0.589	0.517	2e-57
P33160	401	Formate dehydrogenase OS=	N/A	no	0.982	0.546	0.484	1e-56
P33677	362	Formate dehydrogenase OS=	N/A	no	0.973	0.599	0.459	1e-54

>sp|Q07511|FDH_SOLTU Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/223 (88%), Positives = 212/223 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 159 MRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 218

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KK
Sbjct: 219 NLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKK 278

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 279 GVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 338

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAG KDMLDRYFKGEDFP +NYIVK GELAPQYR
Sbjct: 339 TTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381

Involved in formate-dependent oxygen uptake coupled to ATP synthesis.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 2

>sp|Q9SXP2|FDH1_ORYSJ Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 211/223 (94%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+ QV+ GEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 154 MRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 213

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEKE GAK+EEDLD MLPKCD++V+NTPLTEKTRGMF+K+RIAKMKK
Sbjct: 214 NLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKK 273

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV+IVNNARGAIMDTQAV DACSSG +AGY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 274 GVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISG 333

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK G+LA QY+
Sbjct: 334 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q67U69|FDH2_ORYSJ Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1

 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 189/223 (84%), Positives = 209/223 (93%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRIL+L+RNFLPGHHQ+++GEWNVAG+A+R YDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 156 MRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 215

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NL+YHDRVK+DP+LEKE GAK+EEDLD MLPKCD+VV+N PLTEKTRGMF+K+RIAKMKK
Sbjct: 216 NLMYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKK 275

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV IVNNARGAIMDTQAV DAC+SGH+AGY GDVW PQPAPKDHPWRYMPN AMTPH SG
Sbjct: 276 GVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHCSG 335

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTID QLRYAAGVKDMLDRYFKGEDFP QNYIVKAG+LA QY+
Sbjct: 336 TTIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLASQYQ 378

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9ZRI8|FDH_HORVU Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 190/223 (85%), Positives = 211/223 (94%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+ QV+ GEWNVAG+A+RAYDLEGKTVGTVG GR G+LLLQRLKPFNC
Sbjct: 155 MRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNC 214

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++++P+LEKE GAKFEEDLD MLPKCD+VV+NTPLTEKTRGMF+K++IAKMKK
Sbjct: 215 NLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKK 274

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV+IVNNARGAIMDTQAV DACSSGHIAGY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 275 GVIIVNNARGAIMDTQAVADACSSGHIAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISG 334

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAGVKDMLDRYFKGE+FPV+NYIVK GELA QY+
Sbjct: 335 TTIDAQLRYAAGVKDMLDRYFKGEEFPVENYIVKEGELASQYK 377

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9S7E4|FDH_ARATH Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 185/223 (82%), Positives = 206/223 (92%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 162 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 221

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 222 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 281

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 282 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 341

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 342 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q03134|FDH_EMENI Probable formate dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aciA PE=2 SV=3

 Score =  249 bits (637), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 122/228 (53%), Positives = 162/228 (71%), Gaps = 7/228 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL+LVRNF+P H Q+ +G+WNVA VA   +DLE K VGTVG GRIG+ +L+RLKPF+C
Sbjct: 130 MTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDC 189

Query: 61  -NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   + P++EKE GA+  + L+ M+ +CD+V +N PL EKTRG+F+K+ I+KMK
Sbjct: 190 KELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFNKELISKMK 249

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
            G  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAPK+HP RY  +      A 
Sbjct: 250 PGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRYAEHPWGGGNAT 309

Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELAPQ 221
            PH+SGT+IDAQ+RYA G K +LD YF G  D+  Q+ IV  G+ A +
Sbjct: 310 VPHMSGTSIDAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYATK 357

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|O13437|FDH_CANBO Formate dehydrogenase OS=Candida boidinii GN=FDH1 PE=1 SV=1

 Score =  227 bits (578), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 154/224 (68%), Gaps = 7/224 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNP 188

Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +  + E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308

Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 217
           TPH SGTT+DAQ RYA G K++L+ +F G+ D+  Q+ I+  GE
Sbjct: 309 TPHYSGTTLDAQTRYAEGTKNILESFFTGKFDYRPQDIILLNGE 352

NAD(+)-dependent enzyme which catalyzes the final step in the menthanol oxidation pathway. Involved in detoxification of formate.

Candida boidinii (taxid: 5477)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q07103|FDH_NEUCR Formate dehydrogenase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fdh PE=2 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/228 (51%), Positives = 158/228 (69%), Gaps = 7/228 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL+LVRNF+P H Q+  G W+VA  A   +DLEGK VGTVG GRIG+ +L+RLKPF+C
Sbjct: 130 MTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPFDC 189

Query: 61  -NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +  + E E G +   DL+ ML +CD+V +N PL EKT+G+F+K+ I+KMK
Sbjct: 190 KELLYYDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMK 249

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
           KG  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAP+DHP RY  N      AM
Sbjct: 250 KGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPQDHPLRYAKNPFGGGNAM 309

Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELAPQ 221
            PH+SGT++DAQ RYAAG K +++ Y  G+ D+  ++ IV  G+ A +
Sbjct: 310 VPHMSGTSLDAQKRYAAGTKAIIESYLSGKHDYRPEDLIVYGGDYATK 357

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|P33160|FDH_PSESR Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 137/219 (62%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 219
           TT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 337 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375

Pseudomonas sp. (strain 101) (taxid: 33067)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|P33677|FDH_PICAN Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2

 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/224 (45%), Positives = 147/224 (65%), Gaps = 7/224 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+ISG WNVA +A  ++D+EGK + T+G GRIG  +L+RL  FN 
Sbjct: 129 MTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRIGYRVLERLVAFNP 188

Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +  + E++ GA+   D+  ++ + DIV +N PL   ++G+ + + +   K
Sbjct: 189 KELLYYDYQSLSKEAEEKVGARRVHDIKELVAQADIVTINCPLHAGSKGLVNAELLKHFK 248

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAAVKSGQLRGYGGDVWFPQPAPKDHPWRSMANKYGAGNAM 308

Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 217
           TPH SG+ IDAQ+RYA G K++L+ +F  + D+  Q+ I+  G+
Sbjct: 309 TPHYSGSVIDAQVRYAQGTKNILESFFTQKFDYRPQDIILLNGK 352

Pichia angusta (taxid: 870730)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
147810156	383	hypothetical protein VITISV_036417 [Viti	1.0	0.582	0.883	1e-119
225452472	383	PREDICTED: formate dehydrogenase, mitoch	1.0	0.582	0.883	1e-119
224129102	387	formate dehydrogenase [Populus trichocar	0.995	0.573	0.891	1e-119
255552590	386	formate dehydrogenase, putative [Ricinus	1.0	0.577	0.883	1e-119
26454627	381	RecName: Full=Formate dehydrogenase, mit	1.0	0.585	0.887	1e-118
449446660	384	PREDICTED: formate dehydrogenase, mitoch	1.0	0.580	0.865	1e-118
211970690	386	formate dehydrogenase [Lotus japonicus]	1.0	0.577	0.869	1e-118
350538487	381	formate dehydrogenase [Solanum lycopersi	1.0	0.585	0.883	1e-117
449528140	315	PREDICTED: LOW QUALITY PROTEIN: formate	1.0	0.707	0.860	1e-116
218198209	376	hypothetical protein OsI_23019 [Oryza sa	1.0	0.593	0.860	1e-116

>gi|147810156|emb|CAN71454.1| hypothetical protein VITISV_036417 [Vitis vinifera]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 197/223 (88%), Positives = 213/223 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVISGEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 161 MRILILVRNFLPGHHQVISGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 220

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LE + GAKFEED+D MLPKCDI+V+N PLTEKT+GMF+K+RIAK+KK
Sbjct: 221 NLLYHDRIKMDPELENQIGAKFEEDVDVMLPKCDIIVINMPLTEKTKGMFNKERIAKLKK 280

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 281 GVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 340

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAGVKDMLDRYFKGEDFP Q+YIVK G+LA QY+
Sbjct: 341 TTIDAQLRYAAGVKDMLDRYFKGEDFPAQHYIVKEGQLASQYQ 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452472|ref|XP_002278444.1| PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera] gi|296087673|emb|CBI34929.3| unnamed protein product [Vitis vinifera]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 197/223 (88%), Positives = 213/223 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVISGEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 161 MRILILVRNFLPGHHQVISGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 220

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LE + GAKFEED+D MLPKCDI+V+N PLTEKT+GMF+K+RIAK+KK
Sbjct: 221 NLLYHDRIKMDPELENQIGAKFEEDVDVMLPKCDIIVINMPLTEKTKGMFNKERIAKLKK 280

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 281 GVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 340

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAGVKDMLDRYFKGEDFP Q+YIVK G+LA QY+
Sbjct: 341 TTIDAQLRYAAGVKDMLDRYFKGEDFPAQHYIVKEGQLASQYQ 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129102|ref|XP_002320501.1| formate dehydrogenase [Populus trichocarpa] gi|118486031|gb|ABK94859.1| unknown [Populus trichocarpa] gi|222861274|gb|EEE98816.1| formate dehydrogenase [Populus trichocarpa]

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/222 (89%), Positives = 212/222 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQVI+GEWNVA +AYRAYDLEGKTVGTVG GRIGKLLLQRLKPFNC
Sbjct: 165 MRILILVRNFLPGYHQVINGEWNVAAIAYRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNC 224

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LEK+TGAKFEEDLD++L KCD+VV+NTPLTEKTRGMFDK+RIAKMKK
Sbjct: 225 NLLYHDRLKMDPELEKQTGAKFEEDLDSLLSKCDVVVINTPLTEKTRGMFDKERIAKMKK 284

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDACSSG I GYSGDVWNPQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 285 GVLIVNNARGAIMDTQAVVDACSSGQIGGYSGDVWNPQPAPKDHPWRYMPNHAMTPHISG 344

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQY 222
           TTID QLRYAAGVKDMLDRYFKGE+FP QNYIVK G+LA QY
Sbjct: 345 TTIDGQLRYAAGVKDMLDRYFKGEEFPPQNYIVKEGKLASQY 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552590|ref|XP_002517338.1| formate dehydrogenase, putative [Ricinus communis] gi|223543349|gb|EEF44880.1| formate dehydrogenase, putative [Ricinus communis]

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 197/223 (88%), Positives = 214/223 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQVISG+WNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 164 MRILILVRNFLPGYHQVISGDWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 223

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LE +TGAK+EEDLD MLPKCDIVV+NTPLTEKTRG+F+KDRIAK+KK
Sbjct: 224 NLLYHDRIKMDPELENQTGAKYEEDLDAMLPKCDIVVINTPLTEKTRGLFNKDRIAKLKK 283

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHI GYSGDVW PQPA KDHPWRYMPNQAMTPH+SG
Sbjct: 284 GVLIVNNARGAIMDTQAVADACSSGHIGGYSGDVWYPQPASKDHPWRYMPNQAMTPHISG 343

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAGVKDMLDRYFKGE+FP+QNYIVK G+LA QY+
Sbjct: 344 TTIDAQLRYAAGVKDMLDRYFKGEEFPLQNYIVKEGKLASQYQ 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26454627|sp|Q07511.2|FDH_SOLTU RecName: Full=Formate dehydrogenase, mitochondrial; AltName: Full=NAD-dependent formate dehydrogenase; Short=FDH; Flags: Precursor gi|11991527|emb|CAA79702.2| mitochondrial formate dehydrogenase precursor [Solanum tuberosum]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/223 (88%), Positives = 212/223 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 159 MRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 218

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KK
Sbjct: 219 NLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKK 278

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 279 GVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 338

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAG KDMLDRYFKGEDFP +NYIVK GELAPQYR
Sbjct: 339 TTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446660|ref|XP_004141089.1| PREDICTED: formate dehydrogenase, mitochondrial-like [Cucumis sativus]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/223 (86%), Positives = 216/223 (96%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQV++GEWNVAG+A+RAYDLEGKTVGTVG GRIGKLLLQRLKPFNC
Sbjct: 162 MRILILVRNFLPGYHQVVNGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNC 221

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEK+ GA+FEEDLD MLPKCD++V+NTPLT+KTRG+F+K+RIAK KK
Sbjct: 222 NLLYHDRLKIDPELEKQIGAQFEEDLDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKK 281

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGH+ GYSGDVWNPQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 282 GVLIVNNARGAIMDTQAVVDACNSGHVGGYSGDVWNPQPAPKDHPWRYMPNQAMTPHISG 341

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAGVKDML+RYFKGE+FP QNYIVK G+LAPQYR
Sbjct: 342 TTIDAQLRYAAGVKDMLERYFKGEEFPAQNYIVKEGQLAPQYR 384

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211970690|emb|CAR98204.1| formate dehydrogenase [Lotus japonicus]

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/223 (86%), Positives = 213/223 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQ I+GEWNVAG+A+RAYDLEGKT+GTVG GRIGKLLLQRLKPFNC
Sbjct: 164 MRILILVRNFLPGYHQAITGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNC 223

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KM+P+LEKE GAKFEEDLD MLPKCD++V+NTPLT+KTRG+FDK+RIAK+KK
Sbjct: 224 NLLYHDRLKMEPELEKEIGAKFEEDLDAMLPKCDVIVINTPLTDKTRGLFDKNRIAKLKK 283

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 284 GVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISG 343

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAGVKDML+R+FKGEDFP QNYIVK G+LA QYR
Sbjct: 344 TTIDAQLRYAAGVKDMLERHFKGEDFPEQNYIVKEGQLASQYR 386

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538487|ref|NP_001234857.1| formate dehydrogenase [Solanum lycopersicum] gi|56562181|emb|CAH60893.1| formate dehydrogenase [Solanum lycopersicum]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/223 (88%), Positives = 211/223 (94%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 159 MRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 218

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KK
Sbjct: 219 NLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKK 278

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDH WRYMPNQAMTPH+SG
Sbjct: 279 GVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHLWRYMPNQAMTPHISG 338

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAG KDMLDRYFKGEDFP +NYIVK GELAPQYR
Sbjct: 339 TTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528140|ref|XP_004171064.1| PREDICTED: LOW QUALITY PROTEIN: formate dehydrogenase, mitochondrial-like, partial [Cucumis sativus]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 215/223 (96%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQV++GEWNVAG+A+RAYDLEGKTVGTVG GRIGKLLLQRLKPFNC
Sbjct: 93  MRILILVRNFLPGYHQVVNGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNC 152

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEK+ GA+FEEDLD MLPKCD++V+NTPLT+KTRG+F+K+RIAK KK
Sbjct: 153 NLLYHDRLKIDPELEKQIGAQFEEDLDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKK 212

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGH+ GYSGDVWNPQPAPKDHPWRYM NQAMTPH+SG
Sbjct: 213 GVLIVNNARGAIMDTQAVVDACNSGHVGGYSGDVWNPQPAPKDHPWRYMANQAMTPHISG 272

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAGVKDML+RYFKGE+FP QNYIVK G+LAPQYR
Sbjct: 273 TTIDAQLRYAAGVKDMLERYFKGEEFPAQNYIVKEGQLAPQYR 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218198209|gb|EEC80636.1| hypothetical protein OsI_23019 [Oryza sativa Indica Group]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 211/223 (94%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+ QV+ GEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 154 MRILILLRNFLPGYQQVVQGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 213

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEKE GAK+EEDLD MLPKCD++V+NTPLTEKTRGMF+K+RIAKMKK
Sbjct: 214 NLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKK 273

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV+IVNNARGAIMDTQAV DACSSG +AGY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 274 GVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISG 333

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK G+LA QY+
Sbjct: 334 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2185500	384	FDH "formate dehydrogenase" [A	1.0	0.580	0.829	1.8e-103
ASPGD|ASPL0000003895	365	aciA [Emericella nidulans (tax	0.982	0.6	0.539	1.3e-61
UNIPROTKB|O13437	364	FDH1 "Formate dehydrogenase" [	0.973	0.596	0.495	1.8e-55
SGD|S000005915	376	FDH1 "NAD(+)-dependent formate	0.973	0.577	0.470	5.2e-49
CGD|CAL0000982	379	FDH1 [Candida albicans (taxid:	0.977	0.575	0.487	2.9e-48
UNIPROTKB|Q59QN6	379	FDH1 "Potential NAD-formate de	0.977	0.575	0.487	2.9e-48
CGD|CAL0001883	379	orf19.1117 [Candida albicans (	0.977	0.575	0.458	6.2e-46
UNIPROTKB|Q59N71	379	FDH98 "Potential NAD-formate d	0.977	0.575	0.458	6.2e-46
SGD|S000005218	350	GOR1 "Glyoxylate reductase" [S	0.690	0.44	0.440	2.8e-27
TIGR_CMR|GSU_1198	542	GSU_1198 "D-3-phosphoglycerate	0.914	0.376	0.330	6.3e-27

TAIR|locus:2185500 FDH "formate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
 Identities = 185/223 (82%), Positives = 206/223 (92%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct:   162 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 221

Query:    61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
             NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct:   222 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 281

Query:   121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
             GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct:   282 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 341

Query:   181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
             TTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct:   342 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

ASPGD|ASPL0000003895 aciA [Emericella nidulans (taxid:162425)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 122/226 (53%), Positives = 161/226 (71%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M IL+LVRNF+P H Q+ +G+WNVA VA   +DLE K VGTVG GRIG+ +L+RLKPF+C
Sbjct:   130 MTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDC 189

Query:    61 N-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
               LLY+D   + P++EKE GA+  + L+ M+ +CD+V +N PL EKTRG+F+K+ I+KMK
Sbjct:   190 KELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFNKELISKMK 249

Query:   120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
              G  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAPK+HP RY  +      A 
Sbjct:   250 PGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRYAEHPWGGGNAT 309

Query:   175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELA 219
              PH+SGT+IDAQ+RYA G K +LD YF G  D+  Q+ IV  G+ A
Sbjct:   310 VPHMSGTSIDAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYA 355

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IEA;RCA

GO:0033609 "oxalate metabolic process" evidence=RCA

GO:0006083 "acetate metabolic process" evidence=IEP

GO:0005622 "intracellular" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005829 "cytosol" evidence=IEA

GO:0042183 "formate catabolic process" evidence=IEA

UNIPROTKB|O13437 FDH1 "Formate dehydrogenase" [Candida boidinii (taxid:5477)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 111/224 (49%), Positives = 154/224 (68%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct:   129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNP 188

Query:    61 N-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
               LLY+D   +  + E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct:   189 KELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248

Query:   120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
             KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct:   249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308

Query:   175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 217
             TPH SGTT+DAQ RYA G K++L+ +F G+ D+  Q+ I+  GE
Sbjct:   309 TPHYSGTTLDAQTRYAEGTKNILESFFTGKFDYRPQDIILLNGE 352

GO:0005829 "cytosol" evidence=ISS

GO:0006734 "NADH metabolic process" evidence=IMP

GO:0006735 "NADH regeneration" evidence=IDA

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IMP;IDA

GO:0015946 "methanol oxidation" evidence=IMP

GO:0030416 "methylamine metabolic process" evidence=IMP

GO:0042183 "formate catabolic process" evidence=IDA

GO:0042426 "choline catabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0070403 "NAD+ binding" evidence=IDA

SGD|S000005915 FDH1 "NAD(+)-dependent formate dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 111/236 (47%), Positives = 151/236 (63%)

Query:     3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN- 61
             IL+L+RN+  GH Q I+GEW++AGVA   YDLE K + TVG GRIG  +L+RL  FN   
Sbjct:   133 ILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFNPKK 192

Query:    62 LLYHDRVKMDPQ-LEK--ETGAKFE---------EDLDTMLPKCDIVVVNTPLTEKTRGM 109
             LLY+D  ++  + + +  E    F          E L+ M+ + D+V +N PL + +RG+
Sbjct:   193 LLYYDYQELPAEAINRLNEASKLFNGRGDIVQRVEKLEDMVAQSDVVTINCPLHKDSRGL 252

Query:   110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 169
             F+K  I+ MK G  +VN ARGAI   + V +A  SG +AGY GDVW+ QPAPKDHPWR M
Sbjct:   253 FNKKLISHMKDGAYLVNTARGAICVAEDVAEAVKSGKLAGYGGDVWDKQPAPKDHPWRTM 312

Query:   170 PNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 219
              N+     AMT H+SGT++DAQ RYA GVK++L+ YF K  D+  Q+ IV+ G  A
Sbjct:   313 DNKDHVGNAMTVHISGTSLDAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IEA;IGI;ISS;IDA

GO:0042183 "formate catabolic process" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0000982 FDH1 [Candida albicans (taxid:5476)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 117/240 (48%), Positives = 150/240 (62%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W+VA VA   +DLE K + TVG GRIG  +L+RL  FN 
Sbjct:   131 MTMLILIRNYGEGHAQATKGTWDVAAVAKDEFDLEDKVIATVGAGRIGYRILERLVAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK+R
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIVERVEKLEDLVSQADVVTINCPLYEKSR 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             G+F+KD I+KMKKG  +VN ARGAI+D +AV DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GLFNKDLISKMKKGSYLVNTARGAIVDPEAVADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 219
              M N        AMT HVSGT++DAQ RYA GVK +L  YF K  ++  Q+ IV  G+ A
Sbjct:   310 TMHNPYGEAYGNAMTLHVSGTSLDAQARYANGVKQILTEYFNKTYNYRPQDVIVIDGDYA 369

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=ISS

GO:0015942 "formate metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=NAS

GO:0042183 "formate catabolic process" evidence=IEA

UNIPROTKB|Q59QN6 FDH1 "Potential NAD-formate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 117/240 (48%), Positives = 150/240 (62%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W+VA VA   +DLE K + TVG GRIG  +L+RL  FN 
Sbjct:   131 MTMLILIRNYGEGHAQATKGTWDVAAVAKDEFDLEDKVIATVGAGRIGYRILERLVAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK+R
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIVERVEKLEDLVSQADVVTINCPLYEKSR 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             G+F+KD I+KMKKG  +VN ARGAI+D +AV DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GLFNKDLISKMKKGSYLVNTARGAIVDPEAVADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 219
              M N        AMT HVSGT++DAQ RYA GVK +L  YF K  ++  Q+ IV  G+ A
Sbjct:   310 TMHNPYGEAYGNAMTLHVSGTSLDAQARYANGVKQILTEYFNKTYNYRPQDVIVIDGDYA 369

GO:0005829 "cytosol" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=NAS

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=ISS

GO:0015942 "formate metabolic process" evidence=ISS

CGD|CAL0001883 orf19.1117 [Candida albicans (taxid:5476)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 110/240 (45%), Positives = 146/240 (60%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W++A VA   +D+E K   T+G GRIG  +L+RL  FN 
Sbjct:   131 MTMLILLRNYGEGHAQATQGTWDIAAVAKDEFDMEDKVFATIGAGRIGYRILERLIAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK++
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIIERVESLEDLVSQADVVTLNCPLYEKSK 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             GMF+K+ I+KMKKG  ++N ARGA+ D QA+ DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GMFNKELISKMKKGSYVINTARGALTDPQAIADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 219
              M N        AMT HVSGT++DAQ RYA GVK +L  YF K   +  Q+ I+  G  A
Sbjct:   310 TMHNPYGKDYGNAMTVHVSGTSLDAQARYANGVKQILTEYFDKTYKYRPQDVIIIDGHYA 369

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q59N71 FDH98 "Potential NAD-formate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 110/240 (45%), Positives = 146/240 (60%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W++A VA   +D+E K   T+G GRIG  +L+RL  FN 
Sbjct:   131 MTMLILLRNYGEGHAQATQGTWDIAAVAKDEFDMEDKVFATIGAGRIGYRILERLIAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK++
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIIERVESLEDLVSQADVVTLNCPLYEKSK 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             GMF+K+ I+KMKKG  ++N ARGA+ D QA+ DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GMFNKELISKMKKGSYVINTARGALTDPQAIADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 219
              M N        AMT HVSGT++DAQ RYA GVK +L  YF K   +  Q+ I+  G  A
Sbjct:   310 TMHNPYGKDYGNAMTVHVSGTSLDAQARYANGVKQILTEYFDKTYKYRPQDVIIIDGHYA 369

GO:0005575 "cellular_component" evidence=ND

SGD|S000005218 GOR1 "Glyoxylate reductase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 71/161 (44%), Positives = 99/161 (61%)

Query:     3 ILILVRNFLPGHHQVISGEWNVAGVAYRA---YDLEGKTVGTVGCGRIGKLLLQRLKPFN 59
             +L  +RNF  G+ ++I G W  AG A  +   YD EGKTVG +G GRIG+ +L+RLKPF 
Sbjct:   127 LLGALRNFGIGNRRLIEGNWPEAGPACGSPFGYDPEGKTVGILGLGRIGRCILERLKPFG 186

Query:    60 C-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
               N +YH+R ++ P  E+E G ++    +  L + DIV VN PL   T  + + + I KM
Sbjct:   187 FENFIYHNRHQL-PS-EEEHGCEYV-GFEEFLKRSDIVSVNVPLNHNTHHLINAETIEKM 243

Query:   119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159
             K GV+IVN ARGA++D QA+ DA  SG I     DV+  +P
Sbjct:   244 KDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEP 284

GO:0047964 "glyoxylate reductase activity" evidence=IEA;IMP

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0009436 "glyoxylate catabolic process" evidence=IMP

GO:0048037 "cofactor binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0051287 "NAD binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TIGR_CMR|GSU_1198 GSU_1198 "D-3-phosphoglycerate dehydrogenase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 308 (113.5 bits), Expect = 6.3e-27, P = 6.3e-27
 Identities = 70/212 (33%), Positives = 117/212 (55%)

Query:     3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
             +L   RN    +  + SGEW  A   +  Y+L+GKT G +G G++G  +  RLK F C++
Sbjct:   109 LLSFCRNVTRANGSLKSGEWKRA--PFTGYELKGKTAGVIGLGKVGGRVATRLKAFECDV 166

Query:    63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
             L  D   +  +   + G K     D +   CDI+ V+TPLT++TR M  +  +A MK GV
Sbjct:   167 LACDPY-IAVKRAHDLGVKLVSH-DEIYKNCDIITVHTPLTDETRNMIGERELAMMKDGV 224

Query:   123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ--AMTPHVSG 180
             +IVN ARG I++  A++    SG +AG + DV++ +P   ++  + + ++   +TPH+  
Sbjct:   225 IIVNAARGGIIEEAALLKYLESGKVAGAAVDVFSEEPPKSEYLKKLIGHERVVVTPHLGA 284

Query:   181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYI 212
              T +AQ+  A  V   +  Y   +D P++N +
Sbjct:   285 NTFEAQVNVAVDVSREILNYL--DDQPLENAV 314

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7E4	FDH_ARATH	1, ., 2, ., 1, ., 2	0.8295	1.0	0.5807	yes	no
Q9SXP2	FDH1_ORYSJ	1, ., 2, ., 1, ., 2	0.8609	1.0	0.5930	yes	no
Q03134	FDH_EMENI	1, ., 2, ., 1, ., 2	0.5350	0.9910	0.6054	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.2.1.2	0.946
3rd Layer	1.2.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	FDH1	SubName- Full=Putative uncharacterized protein; (387 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_V0589	hypothetical protein (452 aa)	•					•			0.913
	gw1.III.1082.1	formyltetrahydrofolate deformylase (EC-2.1.2.2 3.5.1.10) (299 aa)						•	•		0.904
	gw1.29.504.1	formyltetrahydrofolate deformylase (EC-2.1.2.2 3.5.1.10) (284 aa)						•	•		0.904
	gw1.I.387.1	RecName- Full=Malic enzyme; (595 aa)						•	•		0.893
	eugene3.00061692	hypothetical protein (570 aa)						•	•		0.893
	estExt_fgenesh4_pg.C_LG_XVIII0238	hypothetical protein (570 aa)						•	•		0.893
	estExt_fgenesh4_pg.C_LG_II1218	hypothetical protein (627 aa)						•	•		0.893
	estExt_Genewise1_v1.C_LG_XIV1110	hypothetical protein (608 aa)						•	•		0.893
	estExt_Genewise1_v1.C_LG_III0888	hypothetical protein (596 aa)						•	•		0.893
	estExt_Genewise1_v1.C_LG_XVIII2568	RecName- Full=NADP-dependent malic enzyme; Short=NADP-ME; EC=1.1.1.40; (591 aa)						•	•		0.854

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	0.0
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	1e-146
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	1e-112
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	5e-72
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	1e-71
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-66
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	1e-65
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	2e-60
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	1e-58
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	3e-58
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	8e-56
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	3e-54
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	2e-53
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	1e-52
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	1e-48
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	2e-46
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	9e-46
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	2e-45
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	3e-45
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	1e-44
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	7e-43
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	1e-42
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	1e-42
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-42
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	2e-41
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-41
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	1e-40
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-40
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-38
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	1e-37
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	1e-37
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	2e-37
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	5e-37
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	5e-36
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	4e-34
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	3e-33
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	6e-33
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	3e-32
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	6e-32
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	1e-31
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	9e-31
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	1e-30
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	5e-30
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	4e-29
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	5e-29
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	4e-27
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	6e-27
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	1e-26
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	3e-26
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	4e-26
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	2e-24
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	1e-22
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	7e-21
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	5e-17
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	3e-15
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	3e-13
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	8e-13
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	3e-12
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	5e-12
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	2e-11
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	6e-08
COG1712	255	COG1712, COG1712, Predicted dinucleotide-utilizing	7e-04
PRK13304	265	PRK13304, PRK13304, L-aspartate dehydrogenase; Rev	0.001

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score =  502 bits (1295), Expect = 0.0
 Identities = 199/223 (89%), Positives = 213/223 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+HQV+SGEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 164 MRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 223

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LEKETGAKFEEDLD MLPKCD+VV+NTPLTEKTRGMF+K+RIAKMKK
Sbjct: 224 NLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK 283

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHI GY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 284 GVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISG 343

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAGVKDMLDRYFKGEDFP QNYIVK G+LA QY+
Sbjct: 344 TTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYIVKEGKLASQYQ 386

Length = 386

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  411 bits (1059), Expect = e-146
 Identities = 134/222 (60%), Positives = 171/222 (77%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M ILILVRN++PGH Q I G WNVA V  RAYDLEGKTVGTVG GRIG  +L+RLKPF+ 
Sbjct: 127 MMILILVRNYVPGHEQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDV 186

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +LLY+DR ++  ++EKE G     DL+ M+ KCD+V +N PL  +T G+F+K+ ++KMKK
Sbjct: 187 HLLYYDRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKK 246

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG I D +AV +A  SGH+AGY+GDVW PQPAPKDHPWR MPN AMTPH+SG
Sbjct: 247 GAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMPNNAMTPHISG 306

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQY 222
           TT+DAQ RYAAG K++L+R+F+GE F  +  IV+ G+LA + 
Sbjct: 307 TTLDAQARYAAGTKEILERFFEGEPFRPEYLIVQGGKLAGKG 348

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  326 bits (837), Expect = e-112
 Identities = 111/219 (50%), Positives = 149/219 (68%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+ P H Q + G WN+A    R+YDLEG TVG VG GRIG  +L+RLKPF+ 
Sbjct: 157 MMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDV 216

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            L Y DR ++  ++E+E G  +    D+++  CD+V ++ PL  +T  +FD D +++MK+
Sbjct: 217 KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR 276

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG I+D  AVV A  SGH+AGY+GDVW PQPAP DHPWR MP   MTPH+SG
Sbjct: 277 GSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISG 336

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 219
           TT+ AQ RYAAG +++L+ +F+G     +  IV  G LA
Sbjct: 337 TTLSAQARYAAGTREILECFFEGRPIRDEYLIVDGGRLA 375

Length = 385

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  220 bits (564), Expect = 5e-72
 Identities = 78/200 (39%), Positives = 122/200 (61%), Gaps = 3/200 (1%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             +L L+R        V  G W      +  Y+LEGKTVG VG GRIG+ + +RL+ F  
Sbjct: 106 GLLLALLRRLPRADAAVRRG-WGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGM 164

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +LY+DR +  P+ E++ G +    LD +L + D+VV++ PLT +TR + +++ +A MK 
Sbjct: 165 KVLYYDRTRK-PEPEEDLGFRVV-SLDELLAQSDVVVLHLPLTPETRHLINEEELALMKP 222

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G ++VN ARG ++D  A++ A  SG IAG + DV+ P+P P DHP   +PN  +TPH++G
Sbjct: 223 GAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAG 282

Query: 181 TTIDAQLRYAAGVKDMLDRY 200
            T +A+ R A    + L+R+
Sbjct: 283 YTEEARERMAEIAVENLERF 302

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  220 bits (563), Expect = 1e-71
 Identities = 84/219 (38%), Positives = 127/219 (57%), Gaps = 10/219 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYR--AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           IL L R    G  +V  G W+++G       +DL GKT+G +G GRIG+ + +RLK F  
Sbjct: 111 ILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGM 170

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +LY+DR   +P+ EKE GA++  DLD +L + DI+ ++ PLT +TR + + + +AKMK 
Sbjct: 171 KVLYYDRSP-NPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKP 228

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ---AMTPH 177
           G ++VN ARG ++D QA++DA  SG IAG   DV+  +PA  DHP   + N     +TPH
Sbjct: 229 GAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPH 288

Query: 178 VSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG 216
           ++  T +A+   A    + L+ +F G    V    V   
Sbjct: 289 IASATEEARKAMAELALENLEAFFDGG---VPPNEVNPE 324

Length = 324

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  202 bits (516), Expect = 2e-66
 Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 5/177 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R       QV +G W     A    +L GKTVG +G GRIG+ + +RLK F   +
Sbjct: 4   LLALARRIPEADRQVRAGRWR--PDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMKV 61

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +DR        +  GA++   LD +L + D+V ++ PLT +TR + + +R+A MK G 
Sbjct: 62  IAYDRYPKAE--AEALGARYV-SLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGA 118

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           +++N ARG ++D  A++ A  SG IAG + DV+ P+P P DHP   +PN  +TPH++
Sbjct: 119 ILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  205 bits (523), Expect = 1e-65
 Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 3/202 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R           GEW+    A+R  +L GKTVG +G GRIG+ + +RLK F   +
Sbjct: 111 LLALARRIPDADASQRRGEWD--RKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D      +     G    + LD +L + DI+ ++ PLT +TRG+ + + +AKMK G 
Sbjct: 169 IGYDPYSP-RERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGA 227

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++D  A++ A  SG IAG + DV+  +P P D P   +PN  +TPH+ G+T
Sbjct: 228 ILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGST 287

Query: 183 IDAQLRYAAGVKDMLDRYFKGE 204
            +AQ R A  V + + RY  G 
Sbjct: 288 DEAQERVAEIVAENIVRYLAGG 309

Length = 324

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  191 bits (487), Expect = 2e-60
 Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 4/202 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L RN       + +G+W+     +   +L GKT+G VG GRIG+ + +R + F   +
Sbjct: 107 MLALARNIPQADASLRAGKWDRK--KFMGVELRGKTLGIVGLGRIGREVARRARAFGMKV 164

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D   +  +     G +    LD +L + D + ++TPLT +TRG+ + + +AKMK G 
Sbjct: 165 LAYDPY-ISAERAAAGGVELV-SLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGA 222

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG I+D  A+ DA  SG IAG + DV+  +P P D P   +PN  +TPH+  +T
Sbjct: 223 ILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGAST 282

Query: 183 IDAQLRYAAGVKDMLDRYFKGE 204
            +AQ R A    + +     GE
Sbjct: 283 EEAQERVAVDAAEQVLAVLAGE 304

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  187 bits (476), Expect = 1e-58
 Identities = 72/205 (35%), Positives = 119/205 (58%), Gaps = 2/205 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L L+R       ++ +G W        + +L GKTVG VG G IG+ + +RL+ F  
Sbjct: 108 MLMLALLRRLPEADRELRAGRWG-RPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGV 166

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++Y+DR +     EK+ G ++ E LD +L + D+V ++ PLT +TR +   + +A MK 
Sbjct: 167 EVIYYDRFRDPEAEEKDLGVRYVE-LDELLAESDVVSLHVPLTPETRHLIGAEELAAMKP 225

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G +++N ARG ++D +A++ A  SGH+AG   DV+  +P P D P   + N  +TPH++G
Sbjct: 226 GAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAG 285

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGED 205
            T ++  R AA V + + R  +GE 
Sbjct: 286 VTDESYQRMAAIVAENIARLLRGEP 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  186 bits (474), Expect = 3e-58
 Identities = 72/204 (35%), Positives = 111/204 (54%), Gaps = 8/204 (3%)

Query: 4   LIL--VRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           LIL  +RNF        +G+W        A+D  GKT+G +G G IGK + ++   F   
Sbjct: 120 LILGALRNFSRAERSARAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMK 179

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           ++YH+R ++  +LEK   A +   LD +L + D+V +N PLT  TR + +K   AKMK G
Sbjct: 180 IIYHNRSRLPEELEKAL-ATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDG 238

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN--PQPAPKDHPWRYMPNQAMTPHVS 179
           V+IVN ARGA++D  A+VDA  SG +A    DV+   P+  P       MPN  + PH+ 
Sbjct: 239 VIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPEVNPG---LLKMPNVTLLPHMG 295

Query: 180 GTTIDAQLRYAAGVKDMLDRYFKG 203
             T++ Q +    V + ++ + + 
Sbjct: 296 TLTVETQEKMEELVLENIEAFLET 319

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  179 bits (457), Expect = 8e-56
 Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 6/200 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R       +V +G W+         +L GKT+G +G GRIGK + +RL  F   +
Sbjct: 113 MLALARQIPQADREVRAGGWDRPV----GTELYGKTLGIIGLGRIGKAVARRLSGFGMKV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D    D +  KE G +F   L+ +L + D + ++ PLT +TR + +   +A MK G 
Sbjct: 169 LAYDPYP-DEEFAKEHGVEFV-SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGA 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++D +A+ +A  SG IAG + DV+  +P P D P   +PN  +TPH+  +T
Sbjct: 227 ILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGAST 286

Query: 183 IDAQLRYAAGVKDMLDRYFK 202
            +A LR        +     
Sbjct: 287 KEAVLRMGTMAAQNVIDVLA 306

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  175 bits (447), Expect = 3e-54
 Identities = 73/182 (40%), Positives = 109/182 (59%), Gaps = 6/182 (3%)

Query: 4   LIL--VRNFLPGHHQVISGEW-NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           L+L   R  + G   V +GEW   +       DL GKT+G VG GRIG+ + +R K F  
Sbjct: 109 LLLAAARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGM 168

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +LYH+R +  P+ E+E GA++   LD +L + D V ++ PLT +TR + + +R+A MK 
Sbjct: 169 KILYHNRSRK-PEAEEELGARYV-SLDELLAESDFVSLHCPLTPETRHLINAERLALMKP 226

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV-S 179
             +++N ARG ++D  A+V+A  SG IAG   DV+ P+P P DHP   +PN  + PH+ S
Sbjct: 227 TAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGS 286

Query: 180 GT 181
            T
Sbjct: 287 AT 288

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  173 bits (441), Expect = 2e-53
 Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 4/201 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAY--DLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           +L   RN    H  +  GEW      Y  Y  +L GKTVG VG G IG+ + +RLK F  
Sbjct: 112 MLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGA 171

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +L +D   +DP+  +  G K    L+ +L + D+V ++  LT +TRGM   +  A MK 
Sbjct: 172 EVLVYDPY-VDPEKIEADGVKKV-SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKP 229

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
               +N AR  ++D  A+++A   G I G + DV+  +P P DHP   + N  +TPH++G
Sbjct: 230 TAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEPLPADHPLLKLDNVTLTPHIAG 289

Query: 181 TTIDAQLRYAAGVKDMLDRYF 201
            T D   R    + + L RY 
Sbjct: 290 ATRDVAERSPEIIAEELKRYL 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score =  171 bits (435), Expect = 1e-52
 Identities = 56/202 (27%), Positives = 78/202 (38%), Gaps = 31/202 (15%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             I   +    PG                 A D+ GKTV  VG G +GK   Q L+    
Sbjct: 138 QFIARFLEVQQPGR-------------LGGAPDVAGKTVVVVGAGVVGKEAAQMLRGLGA 184

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-DKDRIAKMK 119
            +L  D      +  +E G K  E+L+  L + D++V  T L  K  G+   ++ + +MK
Sbjct: 185 QVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQMK 244

Query: 120 KGVLIVNNARGAIMDTQAVV-DACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
            G +IVN A GA+   QA+       GH   + GDV  P P                   
Sbjct: 245 PGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGPGC----------------A 288

Query: 179 SGTTIDAQLRYAAGVKDMLDRY 200
            G   DA LR AA     L + 
Sbjct: 289 MGVPWDATLRLAANTLPALVKL 310

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  166 bits (422), Expect = 1e-48
 Identities = 74/216 (34%), Positives = 116/216 (53%), Gaps = 23/216 (10%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L RN    H  + +G+W      +   +L GKT+G +G GRIG  + +R K F   +
Sbjct: 109 MLALARNIPQAHASLKAGKWERK--KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKV 166

Query: 63  L-YHDRVKMDPQLEKETGAKFEE------DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115
           + Y      DP +   +  +  +       LD +L + D + ++TPLT +TRG+   + +
Sbjct: 167 IAY------DPYI---SPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEEL 217

Query: 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175
           AKMK GV I+N ARG I+D  A+ +A  SG +AG + DV+  +P P D P   +PN  +T
Sbjct: 218 AKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEP-PTDSPLFELPNVVVT 276

Query: 176 PHVSGTTIDAQLRYAAGV-KDMLDRYFKGEDFPVQN 210
           PH+  +T +AQ   A  V + ++D   +G   PV N
Sbjct: 277 PHLGASTAEAQENVAIQVAEQVID-ALRGG--PVPN 309

Length = 526

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  155 bits (395), Expect = 2e-46
 Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 7/179 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWN--VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           IL L R        V +G W+  V G   R   L G T+G VG GRIG+ + +R K F  
Sbjct: 110 ILALARKLPFLDRAVRAGGWDWTVGGPIRR---LRGLTLGLVGFGRIGRAVAKRAKAFGF 166

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++ +D       +    G +    LD +L + D+V ++ PLT +TR + D + +A MK 
Sbjct: 167 RVIAYDPYV-PDGVAALGGVRVV-SLDELLARSDVVSLHCPLTPETRHLIDAEALALMKP 224

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           G  +VN ARG ++D  A+  A  SG IAG + DV   +P P D P    PN  +TPH +
Sbjct: 225 GAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAA 283

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  154 bits (390), Expect = 9e-46
 Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 4/205 (1%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP-FN 59
             IL ++R        V  G+W      +  ++L GKTVG +G G IG  + + LK  FN
Sbjct: 113 ALILTVLRKINQASEAVKEGKWTER-ANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFN 171

Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             +L +D      ++ K+ GAK    L+ +L + DI+ ++ PLTE+T  M ++   +KMK
Sbjct: 172 AKVLAYDPYV-SEEVIKKKGAKPV-SLEELLAESDIISLHAPLTEETYHMINEKAFSKMK 229

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           KGV++VN ARG ++D +A+++A  SG IAG   DV   +P   DHP  +  N  +TPH+ 
Sbjct: 230 KGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIG 289

Query: 180 GTTIDAQLRYAAGVKDMLDRYFKGE 204
             T ++       V D ++ +  G+
Sbjct: 290 AYTYESLYGMGEKVVDDIEDFLAGK 314

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  153 bits (389), Expect = 2e-45
 Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 3/202 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL+ +R          +G             L G+TVG VG GRIG+ +++ L+PF   +
Sbjct: 117 ILLALRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRV 176

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D   +        G +    LD +L + D+V ++ PLT +TRGM D   +A M+ G 
Sbjct: 177 LVYDPY-LPAAEAAALGVE-LVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGA 234

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
             +N ARGA++D  A++    SG +     DV +P+P P D P R +PN  +TPH++G+T
Sbjct: 235 TFINTARGALVDEAALLAELRSGRLRAAL-DVTDPEPLPPDSPLRTLPNVLLTPHIAGST 293

Query: 183 IDAQLRYAAGVKDMLDRYFKGE 204
            D + R      D L+R+  GE
Sbjct: 294 GDERRRLGDYALDELERFLAGE 315

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  152 bits (387), Expect = 3e-45
 Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 9/209 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           IL L +  +   + +  G W+  AG    + +L GKTVG +G G IG+ + + LK F   
Sbjct: 103 ILALAKRIVEYDNDLRRGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMR 162

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           ++   R   + +     G     DLD  L + D+VVV  PLT++TRG+     +A MK G
Sbjct: 163 VIGVSRSPKEDEGADFVG--TLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPG 220

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW------NPQPAPKDHPWRYMPNQAMT 175
            ++VN  RG ++D +A+ +A     IAG + DVW          AP  +P+  +PN  M+
Sbjct: 221 AILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMS 280

Query: 176 PHVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
           PH +G T +   R      + + RY +GE
Sbjct: 281 PHNAGWTEETFRRRIDEAAENIRRYLRGE 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  151 bits (384), Expect = 1e-44
 Identities = 74/210 (35%), Positives = 117/210 (55%), Gaps = 8/210 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           +L   R  +   H V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K 
Sbjct: 112 LLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKG 171

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F   +LY+ R +  P+ EKE GA++   L+ +L + D V ++ PLT++T  M +++R+  
Sbjct: 172 FGMRILYYSRTR-KPEAEKELGAEYR-PLEELLRESDFVSLHVPLTKETYHMINEERLKL 229

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 177
           MK   ++VN ARG ++DT+A+V A   G IAG   DV+  +P   +     + N  + PH
Sbjct: 230 MKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPH 288

Query: 178 VSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
           +   T +A+   A  V + L  + +GE  P
Sbjct: 289 IGSATFEAREGMAELVAENLIAFKRGEVPP 318

Length = 333

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  146 bits (370), Expect = 7e-43
 Identities = 64/203 (31%), Positives = 108/203 (53%), Gaps = 3/203 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAY-RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           IL L R    G   +  G +      +   ++L GKT+G +G GRIG+ + +R K F   
Sbjct: 110 ILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMK 169

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           +LY++R ++  + EKE GA +  DLD +L + D V ++ P T +T  + D      MK  
Sbjct: 170 ILYYNRHRLSEETEKELGATYV-DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPT 228

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
             ++N ARG ++D +A+VDA  +G IAG + DV+  +P       + + N  +TPH+   
Sbjct: 229 AYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPE-LKKLDNVILTPHIGNA 287

Query: 182 TIDAQLRYAAGVKDMLDRYFKGE 204
           T++A+   A    D +  + +G+
Sbjct: 288 TVEARDAMAKEAADNIISFLEGK 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  145 bits (369), Expect = 1e-42
 Identities = 67/192 (34%), Positives = 96/192 (50%), Gaps = 2/192 (1%)

Query: 16  QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75
           +  +  W+ A        L G TV  VG G IG+ L+  L PF   ++  +R     +  
Sbjct: 105 RARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLAPFGAKVIAVNRSGRPVEGA 164

Query: 76  KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 135
            ET     + LD + P  D VV+  PLT +TR + D   +A MK    +VN ARG ++DT
Sbjct: 165 DETVPA--DRLDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDT 222

Query: 136 QAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKD 195
            A+VDA  SG IAG + DV +P+P P  HP   +PN  +TPHV+ T    +   A  V +
Sbjct: 223 DALVDALRSGEIAGAALDVTDPEPLPDGHPLWSLPNALITPHVANTPEVIRPLLAERVAE 282

Query: 196 MLDRYFKGEDFP 207
            +  +  GE   
Sbjct: 283 NVRAFAAGEPLL 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  145 bits (369), Expect = 1e-42
 Identities = 70/200 (35%), Positives = 115/200 (57%), Gaps = 7/200 (3%)

Query: 6   LVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH 65
           L+RN +P    V +G    AG      +L GKTVG VG G IG  + +  K F C +L +
Sbjct: 117 LLRNIVPCDAAVRAGG-TKAG--LIGRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAY 173

Query: 66  DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 125
            R +   +  K  G ++   LD +L + DIV ++ PL ++T+G+  K+++A MK+  +++
Sbjct: 174 SRSE--KEEAKALGIEYV-SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILI 230

Query: 126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA-PKDHPWRYMPNQAMTPHVSGTTID 184
           N ARG ++D +A+ DA + G IAG   DV++ +P  P D+P  + PN  +TPHV+  T +
Sbjct: 231 NTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFATEE 290

Query: 185 AQLRYAAGVKDMLDRYFKGE 204
           A  + A  V D ++ +  G+
Sbjct: 291 AMEKRAEIVFDNIEAWLAGK 310

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  149 bits (379), Expect = 2e-42
 Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 12/208 (5%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             +L   RN       +  GEW+    A+   +L GKT+G +G GRIG ++ +R K F  
Sbjct: 105 AMLLAAARNIPQADASLKEGEWDRK--AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGM 162

Query: 61  NLLYHDRVKMDPQLEKET----GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116
            +L +D     P +  E     G +  +DLD +L + D + V+TPLT +TRG+   + +A
Sbjct: 163 KVLAYD-----PYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELA 217

Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTP 176
           KMKKGV+IVN ARG I+D  A+ +A   GH+   + DV+  +P P D+P   + N   TP
Sbjct: 218 KMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-PTDNPLFDLDNVIATP 276

Query: 177 HVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
           H+  +T +AQ   A  V + +    KG 
Sbjct: 277 HLGASTREAQENVATQVAEQVLDALKGL 304

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  141 bits (359), Expect = 2e-41
 Identities = 60/199 (30%), Positives = 108/199 (54%), Gaps = 5/199 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R     + ++  G+WN     Y+  +L GKT+G +G GRIG+ + +  +    N+
Sbjct: 108 MLSLARFIHRANREMKLGKWNKK--KYKGIELRGKTLGIIGFGRIGREVAKIARALGMNV 165

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D    D Q   E G K    L+ +L   D + ++ PLT +T+ M +K  +  MK G 
Sbjct: 166 IAYDPYPKDEQ-AVELGVKTV-SLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGA 223

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +I+N +RG ++D +A+++A  SG +AG + DV+  +P P       +PN ++TPH+  +T
Sbjct: 224 IIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEP-PPGSKLLELPNVSLTPHIGAST 282

Query: 183 IDAQLRYAAGVKDMLDRYF 201
            +AQ R    + + +  + 
Sbjct: 283 KEAQERIGEELANKIIEFL 301

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  141 bits (359), Expect = 3e-41
 Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 3/173 (1%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPK 92
           L GKTV  VG G IG+ + +R K F   ++   R  +  P +  E      ++LD +LP+
Sbjct: 132 LAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVDEVYT--PDELDELLPE 189

Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D VV   PLT +TRG+F+ +R A MK G +++N  RG+++D  A+++A  SG IAG + 
Sbjct: 190 ADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRIAGAAL 249

Query: 153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 205
           DV+  +P P D P   +PN  +TPH+SG +     R      + L RY  GE 
Sbjct: 250 DVFEEEPLPADSPLWDLPNVIITPHISGDSPSYPERVVEIFLENLRRYLAGEP 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  140 bits (356), Expect = 1e-40
 Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 13/199 (6%)

Query: 4   LIL-VRNFLPGHHQVI-SGEWNVAG----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           L+L +   +  H+ V+ +GEW  +       Y   +L GKT+G +G G IG+ + +  + 
Sbjct: 109 LLLALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARIARA 168

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F   +L+ +R    P  E          LD +L + D++ ++ PLT +TR + + + +AK
Sbjct: 169 FGMKVLFAERKGAPPLREGYV------SLDELLAQSDVISLHCPLTPETRNLINAEELAK 222

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTP 176
           MK G +++N ARG ++D QA+ DA +SG IAG   DV + +P   D+P  +  PN  +TP
Sbjct: 223 MKPGAILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEPPRADNPLLKAAPNLIITP 282

Query: 177 HVSGTTIDAQLRYAAGVKD 195
           H++  + +A+ R    + D
Sbjct: 283 HIAWASREARQRLMDILVD 301

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  140 bits (354), Expect = 2e-40
 Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 9/193 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           ++ L R+ L G   V SG++      +    L+GKTVG +G G +G+ + +RL  F   L
Sbjct: 111 LIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATL 170

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           LY+D   +D   E+    +  E LD +L   D +V+  PLT  T  + + + +AKMK G 
Sbjct: 171 LYYDPHPLDQAEEQALNLRRVE-LDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGA 229

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----WNPQPAPKDHPWRYM---PNQAM 174
           L+VN  RG+++D  AV +A  SGH+ GY+ DV     W     P+  P   +        
Sbjct: 230 LLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVF 289

Query: 175 TPHVSGTTIDAQL 187
           TPH+     + +L
Sbjct: 290 TPHIGSAVDEVRL 302

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  135 bits (341), Expect = 2e-38
 Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 23/192 (11%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L+ +R +     +    ++++ G+  +  +L   TVG +G GRIG+ +++ L  F C
Sbjct: 110 MLMLMALRKYKQIMKRAEVNDYSLGGL--QGRELRNLTVGVIGTGRIGQAVIKNLSGFGC 167

Query: 61  NLLYHDRVKMDPQLEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
            +L +D          E   K+ E  DLDT+  + DI+ ++TPLTE+T  + +K+ IAKM
Sbjct: 168 KILAYDP------YPNEEVKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAKM 221

Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW---------NPQPAPKDHPW--- 166
           K GV+I+N ARG ++DT+A+++   SG I G + DV          + +     +     
Sbjct: 222 KDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAI 281

Query: 167 -RYMPNQAMTPH 177
            R  PN  +TPH
Sbjct: 282 LRSFPNVILTPH 293

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  133 bits (336), Expect = 1e-37
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 22/187 (11%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL----------YHDRVKMDPQLEKETGAK 81
            +L GKT+  +G G IG+ + +RLK F   ++          Y D+              
Sbjct: 131 LELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDVEYFDKCYPL---------- 180

Query: 82  FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 141
             E+LD +L + DIVV   PLTE+T  +FD+    +MKKG L +N  RG  +D  A+++A
Sbjct: 181 --EELDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEA 238

Query: 142 CSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 201
             +  I G + DV+  +P PKD P   + N  +TPH+SG +     R      + L  + 
Sbjct: 239 LKNKQIRGAALDVFEEEPLPKDSPLWDLDNVLITPHISGVSEHFNERLFDIFYENLKSFL 298

Query: 202 KGEDFPV 208
           +  +   
Sbjct: 299 EDGELLK 305

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  132 bits (334), Expect = 1e-37
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 20/216 (9%)

Query: 3   ILILVRNFLPGHHQVISG---------EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 53
           +L L RN +     V +G         E       +   +L GKT+G +G G IG+L+  
Sbjct: 95  MLALSRNIIQAIKWVTNGDGDDISKGVEKGKKQ--FVGTELRGKTLGVIGLGNIGRLVAN 152

Query: 54  RLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGMFD 111
                   ++ +D   +  +   +   + +    L+ +L   D + ++ PLT++TRG+ +
Sbjct: 153 AALALGMKVIGYDPY-LSVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLIN 211

Query: 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 171
            + +AKMK G +++N ARG I+D +A+++A   G + GY  D   P+PA   H     PN
Sbjct: 212 AELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDF--PEPALLGHL----PN 265

Query: 172 QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
              TPH+  +T +A+   A      +  + +  +  
Sbjct: 266 VIATPHLGASTEEAEENCAVMAARQIMDFLETGNIT 301

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  131 bits (333), Expect = 2e-37
 Identities = 68/187 (36%), Positives = 95/187 (50%), Gaps = 12/187 (6%)

Query: 19  SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET 78
            G W           L  + V  VG G IG+ + +RL PF   +    RV    +   E 
Sbjct: 119 RGRWEPRRTP----SLADRRVLIVGYGSIGRAIERRLAPFEVRVT---RVARTAR-PGEQ 170

Query: 79  GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV 138
               +E L  +LP+ D+VV+  PLT++TRG+ D + +A+M  G L+VN ARG ++DT A+
Sbjct: 171 VHGIDE-LPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDAL 229

Query: 139 VDACSSGHI-AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDML 197
           V   +SG + A    DV +P+P P  HP    P   +TPHV G T     R  A V+  L
Sbjct: 230 VAELASGRLRAAL--DVTDPEPLPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVRRQL 287

Query: 198 DRYFKGE 204
            RY  GE
Sbjct: 288 RRYAAGE 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  131 bits (332), Expect = 5e-37
 Identities = 51/123 (41%), Positives = 81/123 (65%), Gaps = 3/123 (2%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           +DL GKTVG +G G+IG+   + LK F C +L +D    +P+L K  G ++  DLD +L 
Sbjct: 140 FDLHGKTVGVIGTGKIGQAFARILKGFGCRVLAYD-PYPNPELAKL-GVEYV-DLDELLA 196

Query: 92  KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151
           + DI+ ++ PLT +T  + + + IAKMK GV+++N +RG ++DT+A+++A  SG I G  
Sbjct: 197 ESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGLG 256

Query: 152 GDV 154
            DV
Sbjct: 257 LDV 259

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  128 bits (323), Expect = 5e-36
 Identities = 61/202 (30%), Positives = 105/202 (51%), Gaps = 10/202 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L R     +     G WN    A  ++++ GKT+G +G G IG  L    +     +
Sbjct: 109 IIMLARRLPDRNAAAHRGIWN--KSATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRV 166

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +++D      +L     A+    L+ +L + D V ++ P T  T+ M   + IA+MKKG 
Sbjct: 167 IFYDIA---EKLPLGN-ARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGA 222

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPHV 178
           +++N +RG ++D  A+ +A  SGH+AG + DV+  +PA    P+    + +PN  +TPH+
Sbjct: 223 ILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPHI 282

Query: 179 SGTTIDAQLRYAAGVKDMLDRY 200
            G+T +AQ      V   L +Y
Sbjct: 283 GGSTEEAQENIGLEVAGKLVKY 304

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  124 bits (313), Expect = 4e-34
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 27/196 (13%)

Query: 1   MRILILVRNFLPGHHQVISGE--WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
            + L L+RN      +V  G+  W    +     DL   TVG +G GRIG    +  K F
Sbjct: 111 TQALNLLRNTPEIDRRVAKGDFRWAPGLIGREIRDL---TVGIIGTGRIGSAAAKIFKGF 167

Query: 59  NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
              ++ +D    +P+LEK       + L+ +L + DI+ ++ PLT++   + + +  AKM
Sbjct: 168 GAKVIAYDPYP-NPELEKFLLYY--DSLEDLLKQADIISLHVPLTKENHHLINAEAFAKM 224

Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQPAPKDHPWR 167
           K G ++VN ARG ++DT+A++DA  SG IAG + D            W+ +    +    
Sbjct: 225 KDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDE---V 281

Query: 168 Y-----MPNQAMTPHV 178
                 MPN  +TPH+
Sbjct: 282 LKELIAMPNVLITPHI 297

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  121 bits (305), Expect = 3e-33
 Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 3/171 (1%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L G T+G VG G IG+ L +R       +L    ++   +     G +   DL  +  + 
Sbjct: 133 LAGSTLGIVGFGAIGQALARRALALGMRVL---ALRRSGRPSDVPGVEAAADLAELFARS 189

Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +V+  PLT +TR + + D +A+ K G+ ++N ARG ++D +A+++A  SG I+  S D
Sbjct: 190 DHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLD 249

Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
           V +P+P P+ HP    P   ++PH S    D +   A    + L RY  G+
Sbjct: 250 VTDPEPLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQ 300

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  120 bits (304), Expect = 6e-33
 Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 24/203 (11%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R       +   G+++ AG+  R ++L GKT+G VG GRIG+ + +  + F   +
Sbjct: 108 LLALSRKLREAIERTRRGDFSQAGL--RGFELAGKTLGVVGTGRIGRRVARIARGFGMKV 165

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D V  D +L +  G ++   L+ +L + DI+ ++ P T +T  + +++  A MK G 
Sbjct: 166 LAYDVVP-DEELAERLGFRYV-SLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGA 223

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-------------WNPQPAP-------K 162
           +++N ARGA++DT+A+V A   G +AG   DV             +    +P        
Sbjct: 224 VLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLA 283

Query: 163 DHPWRYMPNQAMTPHVSGTTIDA 185
           DH     PN  +TPHV+  T +A
Sbjct: 284 DHALLRKPNVIITPHVAYNTKEA 306

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  119 bits (301), Expect = 3e-32
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 29/184 (15%)

Query: 20  GEWNVAGVAYRAY----DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75
            E+ ++ +   A      L+GKTVG VG G +G  L +RL+    N+L  D     P+ E
Sbjct: 95  AEYVLSALLVLAQRQGFSLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCD----PPRAE 150

Query: 76  KETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGA 131
            E    F   L+ +L + DI+ ++ PLT      T  + D+D +A +K G +++N +RGA
Sbjct: 151 AEGDPGFV-SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGA 209

Query: 132 IMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM-------TPHVSGTTID 184
           ++D QA++     G       DVW  +P           +  +       TPH++G +++
Sbjct: 210 VIDNQALLALLQRGKDLRVVLDVWENEPE---------IDLELLDKVDIATPHIAGYSLE 260

Query: 185 AQLR 188
            + R
Sbjct: 261 GKAR 264

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  117 bits (296), Expect = 6e-32
 Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 5/201 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL L RN       + +G W           L GKT+G VG GRIG  + +  + F   +
Sbjct: 113 ILALARNLPEEDAALRAGGWQTTL----GTGLAGKTLGIVGLGRIGARVARIGQAFGMRV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +      +  +     G +     + +    D+V ++  L+++TRG+   + +A MK   
Sbjct: 169 IAWSS-NLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTA 227

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           L+VN +RG ++D  A++ A  +G IAG + DV++ +P P DHP R +PN  +TPH+   T
Sbjct: 228 LLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVT 287

Query: 183 IDAQLRYAAGVKDMLDRYFKG 203
            +A   +     + +  +  G
Sbjct: 288 EEAYEGFYGQAVENIAAWLAG 308

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  117 bits (294), Expect = 1e-31
 Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 24/195 (12%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L         +V +G W+  G   R  +L GKTVG +G G +GK   +RL  F C +
Sbjct: 107 LLALFNKLNRADQEVRNGIWDREG--NRGVELMGKTVGIIGYGNMGKAFAKRLSGFGCKV 164

Query: 63  LYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           + +D+        K  G  +  +  L+T+  + DI+ ++ PLT +TRGM +K+ I+  KK
Sbjct: 165 IAYDK-------YKNFGDAYAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKK 217

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW--------NPQPAPKDHPWRYM--- 169
               +N ARG ++ T+ +V A  SG I G   DV         +    P+   + Y+   
Sbjct: 218 PFYFINTARGKVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEA--FEYLIKS 275

Query: 170 PNQAMTPHVSGTTID 184
           P   +TPH++G T +
Sbjct: 276 PKVILTPHIAGWTFE 290

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  115 bits (289), Expect = 9e-31
 Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 18/196 (9%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL L+RN    +        ++        +LE +TVG VG G+IG+ + QR K F   +
Sbjct: 112 ILALLRNR--KYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKV 169

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D  +  P+LE + G K+   L+ +    DI+ ++ PLT +   M +++    MKKGV
Sbjct: 170 IAYDPFRN-PELEDK-GVKYVS-LEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGV 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQ--PAPKDHPWRYM 169
           +I+N ARG+++DT+A+++A  SG I G   DV              +      +      
Sbjct: 227 IIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRR 286

Query: 170 PNQAMTPHVSGTTIDA 185
           PN  +TPH +  T DA
Sbjct: 287 PNVIITPHTAFYTDDA 302

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  114 bits (287), Expect = 1e-30
 Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 4/184 (2%)

Query: 16  QVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQ 73
           +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   +
Sbjct: 124 RVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKE 182

Query: 74  LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 133
            E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++
Sbjct: 183 AEERFNARYC-DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241

Query: 134 DTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGV 193
           D  A++ A   G I     DV+  +P   D P   +PN    PH+   T + +   AA  
Sbjct: 242 DENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACA 301

Query: 194 KDML 197
            D L
Sbjct: 302 VDNL 305

Length = 323

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  112 bits (283), Expect = 5e-30
 Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 16/192 (8%)

Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G W        A +     VG +G G +G  + +RL      +    R   D     E  
Sbjct: 120 GVWK-PLPQRPAAER---RVGVLGLGELGAAVARRLAALGFPVSGWSRSPKDI----EGV 171

Query: 80  AKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 137
             F  EE LD  L + DI+V   PLT +TRG+ + + +A++ +G  ++N  RG  +    
Sbjct: 172 TCFHGEEGLDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVEAD 231

Query: 138 VVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTT-IDAQLRYAAGVKD 195
           ++ A  SGH++G   DV+  +P P DHP WR  P   +TPH++  T  D+     A    
Sbjct: 232 LLAALDSGHLSGAVLDVFEQEPLPADHPLWR-HPRVTVTPHIAAITDPDSAAAQVAEN-- 288

Query: 196 MLDRYFKGEDFP 207
            + R   GE  P
Sbjct: 289 -IRRLEAGEPLP 299

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  109 bits (276), Expect = 4e-29
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 11/201 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYR-AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L ++R        V +G W     A+     + GK VG VG GRIG+ + +RL+ F   
Sbjct: 109 LLAVLRRIPAADRFVRAGRW--PKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGME 166

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KK 120
           + YH R         +   ++   L  +  + D++VV  P    TR + + + +  +   
Sbjct: 167 IAYHGRRPKP-----DVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPD 221

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVL+ N ARG+++D  A++ A   G IAG   DV+  +P         + N  +TPH++ 
Sbjct: 222 GVLV-NVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPA-ALLDLDNVVLTPHIAS 279

Query: 181 TTIDAQLRYAAGVKDMLDRYF 201
            T++ +      V   L+ +F
Sbjct: 280 ATVETRRAMGDLVLANLEAFF 300

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  110 bits (276), Expect = 5e-29
 Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 3/203 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN- 61
           IL L R        V +G+W          +L GKT+G +G G IG +     K      
Sbjct: 105 ILALARRIPEADASVRAGDWK--KGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGV 162

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + Y      +   E        + L   L + D ++   P T    G    +    M K 
Sbjct: 163 VAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKD 222

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            + +NNARG  +  +A +DA     IA  + DV   +P P + P   +PN  +TPH++G 
Sbjct: 223 AVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGA 282

Query: 182 TIDAQLRYAAGVKDMLDRYFKGE 204
           T +AQ   A    + L  + KG 
Sbjct: 283 TEEAQENMAEEAAENLLAFLKGG 305

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  105 bits (264), Expect = 4e-27
 Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 22/223 (9%)

Query: 4   LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
           L+L  +FL          W     AY   D  GK VG +G G IG+   +  +     + 
Sbjct: 101 LVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVY 160

Query: 64  -YHDRVKMDPQLEKETG--------------AKF-----EEDLDTML-PKCDIVVVNTPL 102
            Y    +  P+  K+ G              + +     +  L   L    D++VV+ PL
Sbjct: 161 AYTRSPRPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVSLPL 220

Query: 103 TEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 161
           T  T+ +   +    + K+   + N ARG+++DT A+V A  SG I G + DV +P+P P
Sbjct: 221 TPATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLP 280

Query: 162 KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
            DHP    PN  +TPHVS  T +   R    +++ L+R  KGE
Sbjct: 281 ADHPLWSAPNVIITPHVSWQTQEYFDRALDVLEENLERLRKGE 323

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  105 bits (263), Expect = 6e-27
 Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 11/160 (6%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR---VKMDPQLEKETGAKFE------- 83
           L GKTV  +G G IG  L +RL+PF   LL   R    + +  L    G   +       
Sbjct: 157 LFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGG 216

Query: 84  -EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 142
            ED+     + DIVV+   LT++T G+ + + ++ MKKG L+VN ARG ++D  AV+ A 
Sbjct: 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAAL 276

Query: 143 SSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            SGH+ G + DV   +P   D P    PN  +TPHV+G T
Sbjct: 277 ESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVT 316

Length = 347

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  104 bits (260), Expect = 1e-26
 Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 13/216 (6%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAG----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK 56
             +L L          V +G W  +     + +   +LEGKT+G +G G +G  + +  +
Sbjct: 109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168

Query: 57  PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116
            F   +L         QL           LD +LP+ D + ++ PLTE TR +     +A
Sbjct: 169 AFGMRVLI-------GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELA 221

Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY--MPNQAM 174
            MK G L++N ARG ++D QA+ DA  SGH+ G + DV + +P    +P     +P   +
Sbjct: 222 LMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIV 281

Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQN 210
           TPH +  + +A+ R    + +    +F G+   V +
Sbjct: 282 TPHSAWGSREARQRIVGQLAENARAFFAGKPLRVVS 317

Length = 317

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  103 bits (258), Expect = 3e-26
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 26/175 (14%)

Query: 38  TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 97
           TVG +G GRIG    +  K     ++ +D   + P    +    F   LD +L K DI+ 
Sbjct: 147 TVGIIGTGRIGLTAAKLFKGLGAKVIGYD---IYPSDAAKDVVTFV-SLDELLKKSDIIS 202

Query: 98  VNTP-LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156
           ++ P +  K   + +K+ I+KMK G +++N ARG + D +A+++A  SG +AG+  DV N
Sbjct: 203 LHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVLN 262

Query: 157 PQPAP--KDHPWRYMPNQA------------MTPHVSGTTIDAQLRYAAGVKDML 197
            +     KD     + +              +TPH+   T +A       + +M+
Sbjct: 263 NEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYTDEA-------LSNMI 310

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  102 bits (256), Expect = 4e-26
 Identities = 43/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-DLDTML 90
            +++GK  G +G G IGK + +  + F   ++Y+          K    ++E   L+ +L
Sbjct: 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG------KNKNEEYERVSLEELL 194

Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
              DI+ ++ PL EKT+ +     +  +K G +++N  RG I++ + +  A     I   
Sbjct: 195 KTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI-YA 253

Query: 151 SGDVWNPQPAPKDHPWRYMPNQA---MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
             DV   +P  K+HP   + N+    +TPH++  + +A+      VK+ +  + +G 
Sbjct: 254 GLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310

Length = 311

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 99.1 bits (248), Expect = 2e-24
 Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 12/189 (6%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L+R     + +   G WN    A  ++++ GKT+G VG G IG  L    +     +
Sbjct: 120 IILLLRGIPEKNAKAHRGGWN--KSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRV 177

Query: 63  LYHDRVKMDPQLEKETG-AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
            ++D     P      G A+    L+ +L + D+V ++ P T  T+ M   + +A MK G
Sbjct: 178 YFYDIEDKLP-----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPG 232

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPH 177
            +++N +RG ++D  A+ DA  SGH+AG + DV+  +P     P+    R + N  +TPH
Sbjct: 233 AILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPH 292

Query: 178 VSGTTIDAQ 186
           + G+T +AQ
Sbjct: 293 IGGSTQEAQ 301

Length = 409

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 92.9 bits (231), Expect = 1e-22
 Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 14/197 (7%)

Query: 14  HHQVISGEWNVAG----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK 69
           +   +S  W          Y   D+ G T+G  G G +G  + +  +     +LY +   
Sbjct: 121 YRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEH-- 178

Query: 70  MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129
               + +E    FEE    +L + DIV ++ PLTE T+ + + + +A MK    ++N  R
Sbjct: 179 KGASVCREGYTPFEE----VLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGR 234

Query: 130 GAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPHVSGTTIDA 185
           G ++D QA++DA  +G IAG + DV   +P  KD+P     + +PN  +TPH++  +  A
Sbjct: 235 GPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSA 294

Query: 186 QLRYAAGVKDMLDRYFK 202
                  V   ++ + +
Sbjct: 295 VTTLVNKVAQNIEEFVQ 311

Length = 314

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 89.3 bits (222), Expect = 7e-21
 Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 12/184 (6%)

Query: 30  RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 89
              DL  +T G VG G +G  L++ L+     +L  D     P+ E E    F   L+ +
Sbjct: 110 EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCD----PPRQEAEGDGDFV-SLERI 164

Query: 90  LPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L +CD++ ++TPLT+     TR + D+  +A ++ G  ++N +RGA++D QA+ +A  SG
Sbjct: 165 LEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSG 224

Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 205
                  DVW  +  P+            TPH++G ++D + R  A +   L R+F G  
Sbjct: 225 EDLDAVLDVWEGE--PQIDLELADLCTIATPHIAGYSLDGKARGTAQIYQALCRFF-GIP 281

Query: 206 FPVQ 209
             V 
Sbjct: 282 ARVS 285

Length = 381

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 77.4 bits (191), Expect = 5e-17
 Identities = 35/98 (35%), Positives = 53/98 (54%)

Query: 83  EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 142
           E++L  +LP+ D++V+  P T  T    D + +A + K   +VN  RGA +D  A+V A 
Sbjct: 187 EDELPELLPETDVLVMILPATPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAAL 246

Query: 143 SSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
            SG + G + DV   +P P   P    PN  +TPH +G
Sbjct: 247 ESGRLGGAALDVTATEPLPASSPLWDAPNLILTPHAAG 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 73.0 bits (179), Expect = 3e-15
 Identities = 42/173 (24%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L  K++G +G G IG+ +    K F  N+  + R         +  +    + + ++ K 
Sbjct: 120 LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTR-----SYVNDGISSIYMEPEDIMKKS 174

Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D V+++ PLT++TRGM +   ++  +KG+ I+N AR  ++D   +++   + +   Y  D
Sbjct: 175 DFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSD 234

Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDA--QLRYAAGVKDMLDRYFKGE 204
           VW  +P   +       N  ++PHV+G       Q   A   ++ +  +F+G+
Sbjct: 235 VWWNEPIITETNPD---NVILSPHVAGGMSGEIMQPAVALAFEN-IKNFFEGK 283

Length = 303

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 6/157 (3%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV-KMDPQLEKETGAKFEEDLDTML 90
           Y  E  T+G +G G +G  + Q L+ +   L    R  K  P ++   G    E+L   L
Sbjct: 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGR---EELSAFL 188

Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
            +  +++   P T +T G+ ++  + ++  G  ++N ARG  +    ++ A  SG + G 
Sbjct: 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGA 248

Query: 151 SGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDAQ 186
             DV++ +P P + P W++ P  A+TPHV+  T  A+
Sbjct: 249 MLDVFSREPLPPESPLWQH-PRVAITPHVAAVTRPAE 284

Length = 312

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 66.1 bits (161), Expect = 8e-13
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 25/168 (14%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           + L  +TVG VG G +G+ L  RL+      L  D     P+ ++     F   LD ++ 
Sbjct: 112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCD----PPRADRGDEGDFRS-LDELVQ 166

Query: 92  KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
           + DI+  +TPL +    KT  + D+  I  +K G +++N  RGA++D  A++   + G  
Sbjct: 167 EADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226

Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAM-------TPHVSGTTIDAQLR 188
                DVW  +P           N  +       TPH++G T++ + R
Sbjct: 227 LSVVLDVWEGEPE---------LNVELLKKVDIGTPHIAGYTLEGKAR 265

Length = 378

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 10/122 (8%)

Query: 38  TVGTVGCGRIGKLLLQRL-KPFNCNLLYHD---RVKMDPQLEKETGAKFEEDLDTMLPKC 93
            V  +G GRIG  + +   K +  +++ +D     K    ++      +++ ++  +   
Sbjct: 148 KVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVD------YKDTIEEAVEGA 201

Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           DIV ++ P T+    +F+ D     KKG + VN ARG+++DT+A++DA  +G I G + D
Sbjct: 202 DIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALD 261

Query: 154 VW 155
            +
Sbjct: 262 TY 263

Length = 332

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 18/162 (11%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETGA------------ 80
           L+G+TVG +G GRIG    + + + F  NL+Y+D +    +LEK   A            
Sbjct: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQSTRLEKFVTAYGQFLKANGEQP 221

Query: 81  ---KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 137
              K    ++ +L + D++ ++  L + T  + +K+R+A MKK  ++VN +RG ++D  A
Sbjct: 222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVA 281

Query: 138 VVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           +V+   +  +     DV+  +P  K      M N  + PH++
Sbjct: 282 LVEHLKANPMFRVGLDVFEDEPYMKPG-LADMKNAVVVPHIA 322

Length = 386

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 38  TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKETGAKFEEDLDTMLPKCDI 95
           TV  +G GRIG    +    F   +  +D         L       +++ +   +   DI
Sbjct: 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT------YKDSVKEAIKDADI 201

Query: 96  VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155
           + ++ P  +++  +FDK     +KKG ++VN ARGA+++T  ++ A + G + G + D +
Sbjct: 202 ISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY 261

Length = 330

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 31  AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 90
             +L G  VG +G G  G+++   L  F  ++ Y+ R +  P  E +        L+ +L
Sbjct: 133 PRELTGLKVGIIGLGTTGQMIADALSFFGADVYYYSRTR-KPDAEAKGIRYLP--LNELL 189

Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
              D++    P   K   +  ++    +  G ++ N + G   + +A+     +     +
Sbjct: 190 KTVDVICTCLP---KNVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKASGYNIF 246

Query: 151 SGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 200
             D      A  D      PN   T   +G T  A  R +  V   L+ Y
Sbjct: 247 DCDT---AGALGDEELLRYPNVICTNKSAGWTRQAFERLSQKVLANLEEY 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|224626 COG1712, COG1712, Predicted dinucleotide-utilizing enzyme [General function prediction only]

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 38 TVGTVGCGRIGKLLLQRLK----PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           VG VGCG IGK LL+ ++     F    +Y    +   +LE   G +   D+D ++ + 
Sbjct: 2  KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEV 61

Query: 94 DIVV 97
          D+VV
Sbjct: 62 DLVV 65

Length = 255

>gnl|CDD|237343 PRK13304, PRK13304, L-aspartate dehydrogenase; Reviewed

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 39 VGTVGCGRIGKLLLQRLKP--FNCNLLY-HDR-VKMDPQLEKETGAKFEEDLDTMLPKCD 94
          +G VGCG I  L+ + +     N  L   +DR ++    L  +TGAK    +D ++   D
Sbjct: 4  IGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVD 63

Query: 95 IVV 97
          +VV
Sbjct: 64 LVV 66

Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
PLN03139	386	formate dehydrogenase; Provisional	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PLN02928	347	oxidoreductase family protein	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.91
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.78
PLN02494	477	adenosylhomocysteinase	99.72
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.66
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.64
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.62
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.6
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.54
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.53
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.5
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.49
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.48
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.46
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.45
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.43
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.43
PLN02256	304	arogenate dehydrogenase	99.41
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.38
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.37
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.36
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.36
PLN02712	667	arogenate dehydrogenase	99.34
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.34
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.31
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.3
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.29
PLN02858	1378	fructose-bisphosphate aldolase	99.28
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.27
PRK08655	437	prephenate dehydrogenase; Provisional	99.27
PLN02858	1378	fructose-bisphosphate aldolase	99.26
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.26
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.25
PRK07417	279	arogenate dehydrogenase; Reviewed	99.23
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.22
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.2
PRK05225	487	ketol-acid reductoisomerase; Validated	99.2
PLN02712	667	arogenate dehydrogenase	99.2
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.16
PRK06545	359	prephenate dehydrogenase; Validated	99.16
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.16
PRK08507	275	prephenate dehydrogenase; Validated	99.15
PLN02688	266	pyrroline-5-carboxylate reductase	99.15
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.15
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.14
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.11
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.1
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.06
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.06
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	99.06
PRK08818	370	prephenate dehydrogenase; Provisional	99.06
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.05
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.05
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.04
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.03
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	99.03
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.02
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.02
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.0
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.99
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.99
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.99
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.99
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.98
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.98
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.98
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.97
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.96
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.95
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.93
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.92
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.92
PRK07680	273	late competence protein ComER; Validated	98.92
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.89
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.89
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.88
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.88
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.87
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.86
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.86
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.83
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.82
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.82
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.82
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.81
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.8
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.79
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.79
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.74
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.73
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.72
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.68
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.67
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.63
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.62
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.61
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.61
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.61
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.6
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.59
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.59
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.59
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.58
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.58
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.57
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.57
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.56
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	98.55
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.55
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.54
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.53
PLN00203	519	glutamyl-tRNA reductase	98.53
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.52
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.52
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.51
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.46
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.46
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	98.43
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	98.42
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.42
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.41
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.4
PRK06141	314	ornithine cyclodeaminase; Validated	98.38
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.37
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.37
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.36
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.35
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.35
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.35
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.34
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.33
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.33
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.33
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.33
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.32
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	98.32
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.32
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.29
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.29
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.29
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.29
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.28
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.27
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.27
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.27
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.27
PRK07340	304	ornithine cyclodeaminase; Validated	98.26
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.26
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.26
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.24
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.21
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.21
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	98.19
PRK14982	340	acyl-ACP reductase; Provisional	98.19
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.19
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	98.19
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.18
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	98.17
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.15
PRK08618	325	ornithine cyclodeaminase; Validated	98.14
PRK06046	326	alanine dehydrogenase; Validated	98.14
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.09
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.07
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.03
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.01
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.0
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
PRK06823	315	ornithine cyclodeaminase; Validated	98.0
PTZ00117	319	malate dehydrogenase; Provisional	97.99
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PRK08291	330	ectoine utilization protein EutC; Validated	97.98
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
PRK06444	197	prephenate dehydrogenase; Provisional	97.98
PRK06407	301	ornithine cyclodeaminase; Provisional	97.98
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.97
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.97
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.97
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.96
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.95
PRK14031	444	glutamate dehydrogenase; Provisional	97.94
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.93
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.92
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.92
PRK06199	379	ornithine cyclodeaminase; Validated	97.91
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK14030	445	glutamate dehydrogenase; Provisional	97.9
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.9
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.89
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.88
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.88
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.87
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.86
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.86
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.85
PRK07589	346	ornithine cyclodeaminase; Validated	97.85
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.84
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.81
PLN02477	410	glutamate dehydrogenase	97.81
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	97.79
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.79
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.77
PRK09414	445	glutamate dehydrogenase; Provisional	97.77
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.77
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.77
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.76
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.76
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	97.75
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.75
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.73
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	97.71
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.68
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.63
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.63
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.63
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.63
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.62
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.6
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	97.59
COG0673	342	MviM Predicted dehydrogenases and related proteins	97.58
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.58
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.56
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.56
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.56
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.54
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.54
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.53
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.53
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.53
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	97.51
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	97.5
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.5
PRK10206	344	putative oxidoreductase; Provisional	97.5
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	97.5
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	97.5
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.48
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.48
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.47
PRK06223	307	malate dehydrogenase; Reviewed	97.47
PRK11579	346	putative oxidoreductase; Provisional	97.47
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	97.46
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.45
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.45
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.45
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.44
PRK09496	453	trkA potassium transporter peripheral membrane com	97.44
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.42
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.41
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.4
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.4
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.39
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	97.38
PLN02527	306	aspartate carbamoyltransferase	97.37
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	97.37
PRK06270	341	homoserine dehydrogenase; Provisional	97.35
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	97.35
PRK00779	304	ornithine carbamoyltransferase; Provisional	97.34
PRK02255	338	putrescine carbamoyltransferase; Provisional	97.33
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	97.33
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.32
PRK01713	334	ornithine carbamoyltransferase; Provisional	97.31
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.31
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	97.3
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	97.29
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.29
PRK02102	331	ornithine carbamoyltransferase; Validated	97.27
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.27
PRK04284	332	ornithine carbamoyltransferase; Provisional	97.27
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.27
PRK10669	558	putative cation:proton antiport protein; Provision	97.24
PRK04148	134	hypothetical protein; Provisional	97.24
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.23
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.23
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	97.23
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	97.22
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.22
PLN02342	348	ornithine carbamoyltransferase	97.21
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	97.21
COG5322	351	Predicted dehydrogenase [General function predicti	97.2
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.17
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.16
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.15
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	97.14
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.13
PRK06349	426	homoserine dehydrogenase; Provisional	97.13
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.12
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	97.11
PRK11891	429	aspartate carbamoyltransferase; Provisional	97.09
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.08
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.08
PRK05086	312	malate dehydrogenase; Provisional	97.07
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.06
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.06
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.05
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	97.05
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.05
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.03
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.0
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	97.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.99
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.98
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.96
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.96
COG2910	211	Putative NADH-flavin reductase [General function p	96.95
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.95
PRK10637	457	cysG siroheme synthase; Provisional	96.94
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.93
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.92
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.9
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.88
PRK14804	311	ornithine carbamoyltransferase; Provisional	96.87
PRK06392	326	homoserine dehydrogenase; Provisional	96.87
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.86
PRK09496	453	trkA potassium transporter peripheral membrane com	96.86
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	96.85
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.83
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.83
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.83
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.81
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.8
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.79
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	96.79
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	96.79
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	96.77
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.75
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.74
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.72
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	96.7
PLN02740	381	Alcohol dehydrogenase-like	96.7
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.7
PTZ00325	321	malate dehydrogenase; Provisional	96.69
PRK08192	338	aspartate carbamoyltransferase; Provisional	96.68
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.68
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.68
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.66
PRK06153	393	hypothetical protein; Provisional	96.64
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	96.63
CHL00194	317	ycf39 Ycf39; Provisional	96.62
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	96.61
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.6
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.59
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	96.57
PRK08223	287	hypothetical protein; Validated	96.57
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.57
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.57
PLN02602	350	lactate dehydrogenase	96.55
PLN00106	323	malate dehydrogenase	96.54
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.52
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	96.52
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.52
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.5
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	96.5
PRK08328	231	hypothetical protein; Provisional	96.49
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	96.49
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.49
PLN02383	344	aspartate semialdehyde dehydrogenase	96.46
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	96.44
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.44
PRK08374	336	homoserine dehydrogenase; Provisional	96.42
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	96.42
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.42
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.41
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	96.41
COG2344	211	AT-rich DNA-binding protein [General function pred	96.41
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	96.4
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	96.4
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.39
PRK08265	261	short chain dehydrogenase; Provisional	96.39
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.39
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.38
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.38
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	96.36
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	96.33
PRK05442	326	malate dehydrogenase; Provisional	96.33
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	96.33
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.33
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.32
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	96.32
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.32
PLN02948	577	phosphoribosylaminoimidazole carboxylase	96.3
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.28
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	96.27
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.26
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	96.26
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.26
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.25
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.24
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.23
PLN02514	357	cinnamyl-alcohol dehydrogenase	96.22
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	96.2
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	96.19
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	96.19
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	96.19
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.18
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	96.16
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.15
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	96.13
PLN02827	378	Alcohol dehydrogenase-like	96.13
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.13
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	96.12
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	96.12
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	96.1
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.09
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.07
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.07
PRK07877	722	hypothetical protein; Provisional	96.06
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	96.05
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	96.05
PRK07411	390	hypothetical protein; Validated	96.03
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.03
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	96.02
PRK12862	763	malic enzyme; Reviewed	96.01
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	96.01
PRK12861	764	malic enzyme; Reviewed	95.96
PRK10083	339	putative oxidoreductase; Provisional	95.96
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	95.95
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	95.94
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	95.94
PRK08324	681	short chain dehydrogenase; Validated	95.93
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.92
PRK15076	431	alpha-galactosidase; Provisional	95.91
PLN00112	444	malate dehydrogenase (NADP); Provisional	95.89
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	95.89
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	95.89
PRK14805	302	ornithine carbamoyltransferase; Provisional	95.88
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	95.87
PLN03209	576	translocon at the inner envelope of chloroplast su	95.85
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.84
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.82
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.81
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.79
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	95.78
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.77
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.76
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.76
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.76
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	95.76
PRK07806	248	short chain dehydrogenase; Provisional	95.74
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.74
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.72
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.71
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	95.71
PRK13529	563	malate dehydrogenase; Provisional	95.7
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	95.67
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	95.67
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	95.67
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	95.66
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	95.64
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	95.63
PRK06128	300	oxidoreductase; Provisional	95.63
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.61
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	95.6
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.6
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	95.6
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	95.59
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	95.59
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.58
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	95.57
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.57
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.56
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	95.56
PLN03129	581	NADP-dependent malic enzyme; Provisional	95.55
PRK14851	679	hypothetical protein; Provisional	95.53
PLN02214	342	cinnamoyl-CoA reductase	95.5
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	95.5
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	95.49

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-56  Score=396.12  Aligned_cols=223  Identities=89%  Similarity=1.457  Sum_probs=208.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      |+||++.|++.++++.+++|.|........+++|.|++|||||+|+||+.+|+++++||++|++||++....+.....++
T Consensus       164 ~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~  243 (386)
T PLN03139        164 MRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA  243 (386)
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence            58999999999999999999997532223467999999999999999999999999999999999997655555556677


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ...+++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||++||++||+++|++|+|.||+||||++||+
T Consensus       244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPl  323 (386)
T PLN03139        244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPA  323 (386)
T ss_pred             eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence            76779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCcCCCCC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR  223 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~~~~~~  223 (223)
                      +.++|||.+||+++|||+||.|.+++.++...+++||.+|++|+++++.|.|+..|+|+++|.
T Consensus       324 p~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~~~~i~~~~~~~~~~~  386 (386)
T PLN03139        324 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYIVKEGKLASQYQ  386 (386)
T ss_pred             CCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCCcceeecCCccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999995

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=9.4e-57  Score=390.18  Aligned_cols=203  Identities=36%  Similarity=0.609  Sum_probs=189.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||+++|++..+++++++|.|.+..  ..+.+|.|||+||||+|+||+.+|+++++|||+|++|||... .+.....++
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~W~~~~--~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~-~~~~~~~~~  185 (324)
T COG0111         109 ALLLALARRIPDADASQRRGEWDRKA--FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSP-RERAGVDGV  185 (324)
T ss_pred             HHHHHHhcCchhhHHHHHcCCccccc--cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCc-hhhhccccc
Confidence            47999999999999999999999732  356799999999999999999999999999999999999542 233444456


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|+|++|+++|+++.|++||+|+++||++||++||++||+++|++|+|.||+||||++||+
T Consensus       186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl  265 (324)
T COG0111         186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPL  265 (324)
T ss_pred             eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCC
Confidence            66779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~  206 (223)
                      +.+||||.+|||++|||+|++|.|+++++...+++|+.+|++|.+.
T Consensus       266 ~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~  311 (324)
T COG0111         266 PADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPV  311 (324)
T ss_pred             CCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999975

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=4.3e-55  Score=387.13  Aligned_cols=223  Identities=50%  Similarity=0.935  Sum_probs=206.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      |+||++.|++..+++.+++|.|........+++|.|++|||||+|+||+.+|++|++|||+|++|||+....+.....++
T Consensus       157 ~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~  236 (385)
T PRK07574        157 MMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL  236 (385)
T ss_pred             HHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence            58999999999999999999998543223467899999999999999999999999999999999997644444555677


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++|++||+++|++|+|.||+||||++||+
T Consensus       237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl  316 (385)
T PRK07574        237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA  316 (385)
T ss_pred             eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence            66679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCcCC----CCC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP----QYR  223 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~~~----~~~  223 (223)
                      +.++|||.+|||++|||+||+|.++++++...+++||.+|++|+++...+.|+..|++++    +|.
T Consensus       317 p~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  383 (385)
T PRK07574        317 PADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLIVDGGRLAGTGAHSYT  383 (385)
T ss_pred             CCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCceEecCCcccCccccccc
Confidence            999999999999999999999999999999999999999999999999999999999997    773

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=7.4e-54  Score=372.95  Aligned_cols=210  Identities=31%  Similarity=0.504  Sum_probs=189.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEcccHHHHHHHHHHc-cCCCeEEEEcCCCCChhHHHhh
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKET   78 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~   78 (223)
                      ++||+++|++...++.+++|.|.... ....+.+|.|||+||||+|+||+.+|++++ +|||+|++||+... .+.....
T Consensus       109 ~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~-~~~~~~~  187 (323)
T PRK15409        109 ALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHH-KEAEERF  187 (323)
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCc-hhhHHhc
Confidence            58999999999999999999996421 112467999999999999999999999998 99999999998642 2333445


Q ss_pred             CCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC
Q 027408           79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (223)
Q Consensus        79 g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e  158 (223)
                      ++.. .++++++++||+|++|+|+|++|+++|+++.|+.||+|+++||++||++||++||+++|++|+|.||+||||++|
T Consensus       188 ~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~E  266 (323)
T PRK15409        188 NARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQE  266 (323)
T ss_pred             CcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCC
Confidence            6655 489999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceecc
Q 027408          159 PAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK  214 (223)
Q Consensus       159 p~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~  214 (223)
                      |++.++|||.+|||++|||+|+.|.+++.++...+++||.+|++|+++  .|.||.
T Consensus       267 P~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~vn~  320 (323)
T PRK15409        267 PLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVE--KNCVNP  320 (323)
T ss_pred             CCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCC--CcccCc
Confidence            999999999999999999999999999999999999999999999964  455653

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=3.4e-53  Score=367.68  Aligned_cols=204  Identities=40%  Similarity=0.677  Sum_probs=189.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc--ccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET   78 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~--~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   78 (223)
                      ++||++.|++.++++.+|+|.|....  ....+.+++|||+||||+|+||+++|+++++|||+|++|||++. ++..+..
T Consensus       109 aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~  187 (324)
T COG1052         109 ALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKEL  187 (324)
T ss_pred             HHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhc
Confidence            58999999999999999999998753  22457799999999999999999999999999999999999876 5556666


Q ss_pred             CCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC
Q 027408           79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (223)
Q Consensus        79 g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e  158 (223)
                      +..+++ +++++++||+|++|||++++|+++|+++.|+.||+|++|||++||++||++||++||++|+|.+|+||||+.|
T Consensus       188 ~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~E  266 (324)
T COG1052         188 GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENE  266 (324)
T ss_pred             Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCC
Confidence            677775 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCCC---eEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408          159 PAPKDHPWRYMPN---QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       159 p~~~~~~l~~~~n---v~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~  206 (223)
                      |...++||+.++|   |++|||+|+.|.|++.+|...+++|+.+|++|++.
T Consensus       267 p~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~  317 (324)
T COG1052         267 PALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVP  317 (324)
T ss_pred             CCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9988899988777   99999999999999999999999999999998864

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=6.6e-53  Score=366.55  Aligned_cols=201  Identities=29%  Similarity=0.502  Sum_probs=182.6

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc----cCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~----~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (223)
                      ++||+++|++..+++.+++|.|.....    ...+.+|.||||||||+|+||+.+|+++++|||+|++||++... .   
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~---  184 (317)
T PRK06487        109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A---  184 (317)
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c---
Confidence            579999999999999999999975321    12346899999999999999999999999999999999986421 1   


Q ss_pred             hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        77 ~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                        ... ..++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.||+||||+
T Consensus       185 --~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~  261 (317)
T PRK06487        185 --RPD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLS  261 (317)
T ss_pred             --ccc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence              122 24899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccC--CCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 027408          157 PQPAPKDHPWRY--MPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPV  208 (223)
Q Consensus       157 ~ep~~~~~~l~~--~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~  208 (223)
                      +||++.++|||.  +|||++|||+|++|.++.+++...+++||.+|++|+|++.
T Consensus       262 ~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~  315 (317)
T PRK06487        262 VEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPLRV  315 (317)
T ss_pred             CCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            999999999995  8999999999999999999999999999999999987643

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-52  Score=363.39  Aligned_cols=199  Identities=23%  Similarity=0.407  Sum_probs=180.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc-c---CcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGV-A---YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~-~---~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (223)
                      +|||+++|++..+++.+++|.|..... .   ..+++|.||||||||+|+||+.+|+++++|||+|++|||+....    
T Consensus       106 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----  181 (311)
T PRK08410        106 AMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----  181 (311)
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----
Confidence            589999999999999999999975321 1   12468999999999999999999999999999999999964321    


Q ss_pred             hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        77 ~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      ..++.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|. |+||||+
T Consensus       182 ~~~~~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~  259 (311)
T PRK08410        182 NEEYER-VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLE  259 (311)
T ss_pred             ccCcee-ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence            223443 48999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             CCCCCCCCCccCC---CCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 027408          157 PQPAPKDHPWRYM---PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       157 ~ep~~~~~~l~~~---~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~  205 (223)
                      +||++.++|||.+   |||++|||+|++|.++..++...+++|+.+|++|++
T Consensus       260 ~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        260 KEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             CCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999986   899999999999999999999999999999999863

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-51  Score=357.52  Aligned_cols=199  Identities=26%  Similarity=0.434  Sum_probs=179.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-c---cCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAG-V---AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~-~---~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (223)
                      ++||+++|++...++.+++|.|.... .   ...+.+|.||||||||+|.||+.+|+++++|||+|++|+++... .   
T Consensus       108 ~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-~---  183 (314)
T PRK06932        108 GMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-V---  183 (314)
T ss_pred             HHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-c---
Confidence            57999999999999999999997432 1   12346899999999999999999999999999999999985321 1   


Q ss_pred             hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        77 ~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                       ... ...++++++++||+|++|+|+|++|+++|+++.|++||+|+++||++||++||++||+++|++|+|.||+||||+
T Consensus       184 -~~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~  261 (314)
T PRK06932        184 -CRE-GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLV  261 (314)
T ss_pred             -ccc-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence             111 135899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcc----CCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 027408          157 PQPAPKDHPWR----YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       157 ~ep~~~~~~l~----~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~  205 (223)
                      +||++.++|||    .+|||++|||+|++|.++.+++...+++||.+|++|++
T Consensus       262 ~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        262 KEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             CCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999998    48999999999999999999999999999999998763

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=5.4e-51  Score=356.74  Aligned_cols=208  Identities=34%  Similarity=0.567  Sum_probs=187.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc-----cCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~-----~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~   75 (223)
                      ++||+++|++..+++.+++|.|.....     ...+.+|.||+|||||+|.||+.+|+++++||++|++|||+... ...
T Consensus       110 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~  188 (333)
T PRK13243        110 ALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP-EAE  188 (333)
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH
Confidence            579999999999999999999974211     12357999999999999999999999999999999999997633 233


Q ss_pred             HhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        76 ~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ...++.. .++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|+++|++|+|.||+||||
T Consensus       189 ~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~  267 (333)
T PRK13243        189 KELGAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVF  267 (333)
T ss_pred             HHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccC
Confidence            3445554 589999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceec
Q 027408          156 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIV  213 (223)
Q Consensus       156 ~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~  213 (223)
                      ++||++ ++|||.+|||++|||+|++|.++..++...+++||.+|++|+++  .|.|+
T Consensus       268 ~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~v~  322 (333)
T PRK13243        268 EEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVP--PTLVN  322 (333)
T ss_pred             CCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCC--CcccC
Confidence            999987 88999999999999999999999999999999999999999864  45554

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=7.8e-51  Score=357.25  Aligned_cols=202  Identities=32%  Similarity=0.395  Sum_probs=182.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH----
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK----   76 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~----   76 (223)
                      ++||+++|++....+.+++|.|...    .+.+|.|++|||||+|.||+.+|+++++|||+|++|||+........    
T Consensus       128 ~l~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~  203 (347)
T PLN02928        128 YLMLGLLRKQNEMQISLKARRLGEP----IGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP  203 (347)
T ss_pred             HHHHHHHhCHHHHHHHHHcCCcccc----cccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc
Confidence            4799999999999999999999642    35689999999999999999999999999999999999742211110    


Q ss_pred             -----h---hCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           77 -----E---TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        77 -----~---~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                           .   ... ...++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||++||++||++||+++|++|+|.
T Consensus       204 ~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~  282 (347)
T PLN02928        204 NGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG  282 (347)
T ss_pred             cccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence                 0   011 3458999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 027408          149 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP  207 (223)
Q Consensus       149 ~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~  207 (223)
                      ||+||||++||+++++|||.+|||++|||+|++|.++++++...+++|+.+|++|+++.
T Consensus       283 gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~  341 (347)
T PLN02928        283 GLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLT  341 (347)
T ss_pred             EEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999764

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=1.4e-50  Score=359.00  Aligned_cols=209  Identities=23%  Similarity=0.300  Sum_probs=182.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEcccHHHHHHHHHHc-cCCCeEEEEcCCCCChhH--HH
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL--EK   76 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~--~~   76 (223)
                      ++||++.|++..+++.+++|.|..+. ....+.+|.|++|||||+|.||+.+|++++ +|||+|++||++......  ..
T Consensus       129 ~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~  208 (386)
T PLN02306        129 SLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT  208 (386)
T ss_pred             HHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh
Confidence            58999999999999999999985322 112467899999999999999999999985 999999999987532111  01


Q ss_pred             hhC------------CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408           77 ETG------------AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus        77 ~~g------------~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      .++            +....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||++||++||++||+++|++
T Consensus       209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s  288 (386)
T PLN02306        209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA  288 (386)
T ss_pred             hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence            111            12245899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcc
Q 027408          145 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQN  210 (223)
Q Consensus       145 g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n  210 (223)
                      |++.||+||||++||++ ++|||.+|||++|||+|++|.++.+++...+++||.+|++|+++ +.+|
T Consensus       289 g~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        289 NPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             CCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence            99999999999999975 46899999999999999999999999999999999999999976 3444

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-50  Score=362.52  Aligned_cols=204  Identities=29%  Similarity=0.502  Sum_probs=185.3

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||+++|++..+++.+++|.|.+..  ..+.+|.||||||||+|+||+.+|+++++|||+|++||++....    ..++
T Consensus       118 ~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~  191 (409)
T PRK11790        118 GEIILLLRGIPEKNAKAHRGGWNKSA--AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNA  191 (409)
T ss_pred             HHHHHHHcChHHHHHHHHcCcccccc--cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCc
Confidence            57999999999999999999998643  34679999999999999999999999999999999999864211    1234


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.||+||||++||+
T Consensus       192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~  271 (409)
T PRK11790        192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK  271 (409)
T ss_pred             eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence            45568999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC----CCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcc
Q 027408          161 PK----DHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQN  210 (223)
Q Consensus       161 ~~----~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n  210 (223)
                      +.    ++|||.+|||++|||+||+|.++++++...+++|+.+|++|+++ ..+|
T Consensus       272 ~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn  326 (409)
T PRK11790        272 SNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAVN  326 (409)
T ss_pred             CccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCccee
Confidence            76    46999999999999999999999999999999999999999875 3444

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=1.7e-50  Score=350.28  Aligned_cols=208  Identities=24%  Similarity=0.354  Sum_probs=185.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+.+.+++|.|...    ...++.|+||||||+|.||+.+|+++++|||+|++||++.........  +
T Consensus       105 ~~~L~~~r~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~  178 (312)
T PRK15469        105 SQVLHWFRRFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--F  178 (312)
T ss_pred             HHHHHHHcChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--e
Confidence            4799999999999999999999742    245799999999999999999999999999999999986533211111  1


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|+|++|+++++++.|+.||+|+++||++||++||++||+++|++|++.||+||||++||+
T Consensus       179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl  258 (312)
T PRK15469        179 AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPL  258 (312)
T ss_pred             cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCC
Confidence            12358999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCc
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGEL  218 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~  218 (223)
                      +.++|||.+|||++|||+|++|.+.  ++...+.+|+++|.+|++  +.|.|+++.+|
T Consensus       259 ~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~--~~~~V~~~~gY  312 (312)
T PRK15469        259 PPESPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGER--VCGQVDRARGY  312 (312)
T ss_pred             CCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCC--CcccCCcccCC
Confidence            9999999999999999999999875  567888999999999997  58888887664

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=5.8e-51  Score=327.64  Aligned_cols=177  Identities=39%  Similarity=0.673  Sum_probs=154.8

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ||||++.|++..+++.++++.|.. .....+++|.|++|||||+|+||+.+|+++++|||+|++|||+..........++
T Consensus         2 ~l~L~~~R~~~~~~~~~~~~~W~~-~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    2 ALMLALLRRLPEYHEAQRNGEWAS-RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTBHHH-HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             hHHHHHHhCHHHHHHHHHcCCCCC-CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            589999999999999999999921 1124578999999999999999999999999999999999998744333445566


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      .. .++++++++||+|++|+|+|++|+++|+++.|+.||+|+++||++||++||++||+++|++|++.+|+||||++||+
T Consensus        81 ~~-~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~  159 (178)
T PF02826_consen   81 EY-VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL  159 (178)
T ss_dssp             EE-SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred             ee-eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence            44 59999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCC
Q 027408          161 PKDHPWRYMPNQAMTPHVS  179 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a  179 (223)
                      +.++|||++||+++|||+|
T Consensus       160 ~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  160 PADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             STTHHHHTSTTEEEESS-T
T ss_pred             CCCChHHcCCCEEEeCccC
Confidence            9999999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=1.2e-49  Score=366.64  Aligned_cols=209  Identities=34%  Similarity=0.560  Sum_probs=190.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      +|||+++|++..+++.+++|.|.+..  ..+.+|.||+|||||+|+||+.+|+++++|||+|++|||+. ..+.....++
T Consensus       105 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~  181 (525)
T TIGR01327       105 AMLLAAARNIPQADASLKEGEWDRKA--FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPERAEQLGV  181 (525)
T ss_pred             HHHHHHhcCHHHHHHHHHcCCccccc--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence            58999999999999999999998542  34679999999999999999999999999999999999863 3344455677


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ...+++++++++||+|++|+|++++|+++++++.|+.||+|+++||++||++||++||+++|++|+|.||+||||++||+
T Consensus       182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~  261 (525)
T TIGR01327       182 ELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP  261 (525)
T ss_pred             EEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence            66678999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcceec
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIV  213 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n~~~  213 (223)
                       .++|||.+|||++|||+|++|.++++++...+++|+.+|++|+++ +.+|...
T Consensus       262 -~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~  314 (525)
T TIGR01327       262 -TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPG  314 (525)
T ss_pred             -CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCC
Confidence             578999999999999999999999999999999999999999975 4444444

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-50  Score=340.57  Aligned_cols=207  Identities=34%  Similarity=0.546  Sum_probs=192.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++|++++|++.++...+++|+|.+..  +.|.+|.|||+||+|+|+||+.+|++++.+||+|++||+-. +.+.++.+|+
T Consensus       113 gli~SLaR~i~~A~~s~k~g~wnr~~--~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gv  189 (406)
T KOG0068|consen  113 GLILSLARQIGQASASMKEGKWNRVK--YLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGV  189 (406)
T ss_pred             HHHHHHhhhcchhheeeecCceeecc--eeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccc
Confidence            37899999999999999999999764  56899999999999999999999999999999999999854 5567778898


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      +.+ +++|+++.||||.+|+|++|+|+++++.+.|+.||+|..|||++||++||+.||+++|++|++.||++|||+.||+
T Consensus       190 q~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp  268 (406)
T KOG0068|consen  190 QLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPP  268 (406)
T ss_pred             eee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCC
Confidence            876 8999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC--CCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcce
Q 027408          161 PK--DHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNY  211 (223)
Q Consensus       161 ~~--~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~  211 (223)
                      ..  ++.|..+|||++|||+|++|.|++.+++..+.+++..|.+|.....+|.
T Consensus       269 ~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~~~~g~Vna  321 (406)
T KOG0068|consen  269 KNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYINGNSAGSVNA  321 (406)
T ss_pred             ccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhccCccceech
Confidence            76  7889999999999999999999999999999999999999954444443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.6e-49  Score=362.85  Aligned_cols=208  Identities=34%  Similarity=0.567  Sum_probs=189.6

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||+++|++..+++.+++|.|.+..  ..+.+|.||+|||||+|+||+.+|+++++|||+|++|||+. ..+.....++
T Consensus       107 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~  183 (526)
T PRK13581        107 ALMLALARNIPQAHASLKAGKWERKK--FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPERAAQLGV  183 (526)
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCCccC--ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence            58999999999999999999997542  34678999999999999999999999999999999999864 3334455677


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ... ++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++||++||+++|++|+|.||+||||++||+
T Consensus       184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~  262 (526)
T PRK13581        184 ELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPP  262 (526)
T ss_pred             EEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence            766 8999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcceec
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIV  213 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n~~~  213 (223)
                      + ++|||.+|||++|||+|++|.++++++...+++|+.+|++|+++ +.+|...
T Consensus       263 ~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~  315 (526)
T PRK13581        263 T-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPS  315 (526)
T ss_pred             C-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCC
Confidence            6 88999999999999999999999999999999999999999975 3444443

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=2.9e-48  Score=334.28  Aligned_cols=207  Identities=43%  Similarity=0.727  Sum_probs=193.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      +++|.+.|++..+++++++|.|.+......+..+.||||||+|+|+||+.+|++|++||+.+.+++|++...+.+.+.+.
T Consensus       127 ~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~  206 (336)
T KOG0069|consen  127 SLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA  206 (336)
T ss_pred             HHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc
Confidence            46899999999999999999995554456678999999999999999999999999999889999998877777777776


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      +. .++++++.++|+|++|||+|++|++++|++.+..||+|++|||++||.++|++++.++|++|+|.+++||||++|| 
T Consensus       207 ~~-~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-  284 (336)
T KOG0069|consen  207 EF-VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-  284 (336)
T ss_pred             cc-cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-
Confidence            64 5899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCc
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQ  209 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~  209 (223)
                      +.++||+.++|+++|||+|+.|.+++.+|+..++.|+.+++.|++. +++
T Consensus       285 ~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~  334 (336)
T KOG0069|consen  285 PVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV  334 (336)
T ss_pred             CCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence            8889999999999999999999999999999999999999999987 443

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=8.7e-48  Score=331.86  Aligned_cols=200  Identities=24%  Similarity=0.409  Sum_probs=180.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||+++|++...++.+++|.|...    .+.+|+|++|||||+|+||+.+|+++++||++|++|||+....      ++
T Consensus        91 ~l~L~l~R~i~~~~~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~  160 (303)
T PRK06436         91 ALLLAWAKNICENNYNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GI  160 (303)
T ss_pred             HHHHHHHcChHHHHHHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------Cc
Confidence            5899999999999999999999853    3568999999999999999999999999999999999975321      22


Q ss_pred             e-ecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           81 K-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        81 ~-~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      . ...++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|+++|++|++.+|+||||++||
T Consensus       161 ~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP  240 (303)
T PRK06436        161 SSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP  240 (303)
T ss_pred             ccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCC
Confidence            2 145899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCCCeEEccCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCC
Q 027408          160 APKDHPWRYMPNQAMTPHVS-GTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG  216 (223)
Q Consensus       160 ~~~~~~l~~~~nv~~tPH~a-~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~  216 (223)
                      ++.++   .+|||++|||++ ++|.++.+++...+++|+.+|++|++   .|.|+.++
T Consensus       241 ~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~---~~~V~~~~  292 (303)
T PRK06436        241 IITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP---KNIVRKEE  292 (303)
T ss_pred             CCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC---CceEchHH
Confidence            87765   579999999976 58999999999999999999999975   47776653

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-47  Score=334.41  Aligned_cols=201  Identities=20%  Similarity=0.276  Sum_probs=179.3

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|.+.. ...+++|.|++|||||+|.||+.+|++++++|++|++||+++.....    ..
T Consensus       112 ~l~L~~~R~~~~~~~~~~~~~~~w~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~  186 (330)
T PRK12480        112 SIALQLVRRFPDIERRVQAHDFTWQA-EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FL  186 (330)
T ss_pred             HHHHHHHHhHHHHHHHHHhCCccccc-ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hh
Confidence            58999999999999999999765322 12467899999999999999999999999999999999997532211    12


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|++++|.++++++.++.||+|+++||++||.+||++||+++|++|++.||+||||++||+
T Consensus       187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~  266 (330)
T PRK12480        187 TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAA  266 (330)
T ss_pred             hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCc
Confidence            34458999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C-------------CCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408          161 P-------------KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       161 ~-------------~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~  206 (223)
                      .             ..+|||.+|||++|||+|++|.++.+++...+.+|+.+|++|++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~  325 (330)
T PRK12480        267 YFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTC  325 (330)
T ss_pred             cccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            2             124799999999999999999999999999999999999999875

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=1.2e-45  Score=322.97  Aligned_cols=202  Identities=23%  Similarity=0.331  Sum_probs=179.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHH-ccCCCeEEEEcCCCCChhHHHhhC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETG   79 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~g   79 (223)
                      ++||++.|++...++.+++|.|.+.. ...+++|.|++|||||+|.||+++|+++ +++|++|++||++....  .. ..
T Consensus       112 ~~~l~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~~-~~  187 (332)
T PRK08605        112 TQAINLVRHFNQIQTKVREHDFRWEP-PILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--AA-TY  187 (332)
T ss_pred             HHHHHHhcChHHHHHHHHhCCccccc-ccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--HH-hh
Confidence            47999999999999999999885322 1246799999999999999999999999 78999999999875322  11 13


Q ss_pred             CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      +....++++++++||+|++|+|.++.|.++++++.++.||+|+++||++||.++|+++|+++|++|+|.||+||||+.||
T Consensus       188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep  267 (332)
T PRK08605        188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFER  267 (332)
T ss_pred             ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence            44456899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             --CCCCC-----------CccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408          160 --APKDH-----------PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       160 --~~~~~-----------~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~  206 (223)
                        ++.++           +||.+|||++|||+|++|.++.+++...+++|+.+|++|++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~  327 (332)
T PRK08605        268 PLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTT  327 (332)
T ss_pred             CccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence              35554           499999999999999999999999999999999999999875

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=2.2e-42  Score=305.03  Aligned_cols=167  Identities=27%  Similarity=0.483  Sum_probs=149.6

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh----h
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----T  106 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~----t  106 (223)
                      +.+|.|+||||||+|+||+.+|+++++|||+|++|||.....    .... .+.++++++++||+|++|+|+|++    |
T Consensus       111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T  185 (378)
T PRK15438        111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDEG-DFRSLDELVQEADILTFHTPLFKDGPYKT  185 (378)
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----cccc-ccCCHHHHHhhCCEEEEeCCCCCCccccc
Confidence            347999999999999999999999999999999999853211    1111 245899999999999999999996    9


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~  186 (223)
                      .++++++.|+.||+|+++||+|||++||++||+++|++|++.+|+||||++||. .+++|+..++ ++|||+||+|.|+.
T Consensus       186 ~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~  263 (378)
T PRK15438        186 LHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGK  263 (378)
T ss_pred             ccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHH
Confidence            999999999999999999999999999999999999999999999999999996 4567876654 99999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCC
Q 027408          187 LRYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       187 ~~~~~~~~~~i~~~~~g~~  205 (223)
                      .++..++.+|+.+|+ |.+
T Consensus       264 ~~~~~~~~~~l~~~~-~~~  281 (378)
T PRK15438        264 ARGTTQVFEAYSKFI-GHE  281 (378)
T ss_pred             HHHHHHHHHHHHHHH-cCc
Confidence            999999999999998 544

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=4.3e-42  Score=303.92  Aligned_cols=168  Identities=31%  Similarity=0.520  Sum_probs=152.7

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCCh----hh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KT  106 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~----~t  106 (223)
                      +.+|.|+||||||+|+||+.+|++++++|++|++||+.....    . +...+.++++++++||+|++|+|+|+    .|
T Consensus       111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T  185 (381)
T PRK00257        111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA----E-GDGDFVSLERILEECDVISLHTPLTKEGEHPT  185 (381)
T ss_pred             CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc----c-cCccccCHHHHHhhCCEEEEeCcCCCCccccc
Confidence            457999999999999999999999999999999999854211    1 11234589999999999999999999    59


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~  186 (223)
                      .++++++.|+.||+|+++||+|||++||++||+++|++|++.+|+||||++||. .+++|+.. |+++|||+||+|.++.
T Consensus       186 ~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~  263 (381)
T PRK00257        186 RHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGK  263 (381)
T ss_pred             cccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHH
Confidence            999999999999999999999999999999999999999999999999999996 46788875 9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCC
Q 027408          187 LRYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       187 ~~~~~~~~~~i~~~~~g~~  205 (223)
                      .++..++.+|+.+|+.+.+
T Consensus       264 ~r~~~~~~~nl~~~~~~~~  282 (381)
T PRK00257        264 ARGTAQIYQALCRFFGIPA  282 (381)
T ss_pred             HHHHHHHHHHHHHHHcCCC
Confidence            9999999999999998864

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.91  E-value=7.1e-25  Score=188.39  Aligned_cols=206  Identities=26%  Similarity=0.351  Sum_probs=177.6

Q ss_pred             cHHHHHhCchHHHHHHHcCCCccCcc-----cCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027408            2 RILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (223)
Q Consensus         2 ~~l~~~R~~~~~~~~~~~~~w~~~~~-----~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (223)
                      ++|.+.|+-.+..+..++|.|.....     ......+.|.+.|++|+|++|++++.++++||+.|+.||+.- ..-..+
T Consensus       139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~-~~g~~~  217 (435)
T KOG0067|consen  139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYL-IDGIDK  217 (435)
T ss_pred             HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchh-hhhhhh
Confidence            47889999999999999999964321     123356899999999999999999999999999999999854 334556


Q ss_pred             hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        77 ~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      .+|...+.++++++.++|.+++|+.+++.++++++.-.+++|++|+.++|++||.++|+.+|.++|++|++++++     
T Consensus       218 ~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-----  292 (435)
T KOG0067|consen  218 SLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-----  292 (435)
T ss_pred             hcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-----
Confidence            678877778999999999999999999999999999999999999999999999999999999999999999887     


Q ss_pred             CCCCC-CCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcceeccC
Q 027408          157 PQPAP-KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIVKA  215 (223)
Q Consensus       157 ~ep~~-~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n~~~~~  215 (223)
                        |.. ...|+.+.||.++|||.++++..+..++.+.+...+.+-+.|+.. +..|-|+.|
T Consensus       293 --~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE  351 (435)
T KOG0067|consen  293 --PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNKE  351 (435)
T ss_pred             --CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhh
Confidence              221 345788899999999999999999999999888889888888755 556666654

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.78  E-value=1.7e-18  Score=156.20  Aligned_cols=124  Identities=19%  Similarity=0.254  Sum_probs=103.6

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      +..|.|++++|+|+|.||+.+|++++++|++|+++++++.....+...|+.. .+++++++++|+|++|+.    +.++|
T Consensus       249 ~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atG----t~~iI  323 (476)
T PTZ00075        249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATG----NKDII  323 (476)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCC----ccccc
Confidence            3479999999999999999999999999999999987664333344456654 479999999999999864    67899


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCc
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW  166 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l  166 (223)
                      +.+.|+.||+|++++|++|+   |++.+.++|+++.    ++|+++.+|......+
T Consensus       324 ~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~~~~  372 (476)
T PTZ00075        324 TLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDRYTF  372 (476)
T ss_pred             CHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCCeEEe
Confidence            99999999999999999999   7888888888754    7899999987654333

>PLN02494 adenosylhomocysteinase

Probab=99.72  E-value=3.7e-17  Score=147.23  Aligned_cols=121  Identities=18%  Similarity=0.232  Sum_probs=105.0

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ..+.|++++|+|+|.||+.+|++++++|++|+++++++.....+...|+... +++++++.+|+|+.+..    +.++++
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI~  324 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDIIM  324 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----CccchH
Confidence            3479999999999999999999999999999999987644344555566544 78999999999987544    678889


Q ss_pred             HHHHhcCCCCcEEEEcCC-CCccCHHHHHHH--HHhCCccEEEeeCCCCC
Q 027408          112 KDRIAKMKKGVLIVNNAR-GAIMDTQAVVDA--CSSGHIAGYSGDVWNPQ  158 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~sr-g~~vd~~al~~~--L~~g~i~~a~lDv~~~e  158 (223)
                      .+.|+.||+|++++|++| +..||..+|.++  ++.+.++ +.+|+|+.+
T Consensus       325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~  373 (477)
T PLN02494        325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP  373 (477)
T ss_pred             HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence            999999999999999999 679999999998  9999998 999999874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.66  E-value=7.3e-16  Score=137.57  Aligned_cols=120  Identities=17%  Similarity=0.226  Sum_probs=103.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      .+.|++|+|+|+|.||+.+|+.++.+|++|+++++++.....+...|+... +++++++.+|+|+.++.    +.++++.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG----~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATG----NKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCC----CHHHHHH
Confidence            589999999999999999999999999999999887644444555566544 78899999999988765    5778889


Q ss_pred             HHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCccEEEeeCCCC
Q 027408          113 DRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWNP  157 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g~i~~a~lDv~~~  157 (223)
                      +.+..||+|++++|++|+.+ ||.++|.+++.+....+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            99999999999999999998 9999999998887777789998763

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.64  E-value=9.8e-16  Score=132.12  Aligned_cols=93  Identities=18%  Similarity=0.289  Sum_probs=81.2

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ..|.||+|||||+|+||+++|++|+++|++|+++++...+.+.+...|+... ++++++++||+|++++|+ +.+.++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            4699999999999999999999999999999999876555455666677654 899999999999999996 67789999


Q ss_pred             HHHHhcCCCCcEEEE
Q 027408          112 KDRIAKMKKGVLIVN  126 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn  126 (223)
                      ++.++.||+|++++-
T Consensus        90 ~eil~~MK~GaiL~f  104 (335)
T PRK13403         90 AEVEENLREGQMLLF  104 (335)
T ss_pred             HHHHhcCCCCCEEEE
Confidence            999999999998764

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.62  E-value=9e-16  Score=121.49  Aligned_cols=120  Identities=14%  Similarity=0.255  Sum_probs=95.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc-HHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-KDRI  115 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~-~~~~  115 (223)
                      ++|||||+|.||+.+|+.|.+.|++|.+|||++...+.+...++...+++.|+++++|+|++++|..++++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            589999999999999999999999999999987555555666888889999999999999999998777766642 1278


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      +.+++|.++||++....-+...+.+.+.+..+.+...-|+.
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G  122 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSG  122 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeec
Confidence            88999999999999999999999999998887744444444

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.60  E-value=6e-15  Score=125.88  Aligned_cols=125  Identities=14%  Similarity=0.197  Sum_probs=110.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KD  113 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~  113 (223)
                      ++||+||+|.||..+|++|.+.|+.|.+|||++.. .+.....|.....+..|+++++|+|++|+|..++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            48999999999999999999999999999999755 5666677888888999999999999999999999888875  57


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC
Q 027408          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP  161 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~  161 (223)
                      .++.+|+|+++||+|.-+......+.+.+++..+....-.|....+..
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A  128 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGA  128 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhh
Confidence            889999999999999999999999999999999986666666666543

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.54  E-value=3.9e-14  Score=122.10  Aligned_cols=123  Identities=19%  Similarity=0.261  Sum_probs=101.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~  114 (223)
                      ++|||||+|.||..+|+.+...|++|.+||+++...+.....++....++++++++||+|++|+|.+..++.++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            589999999999999999999999999999986444445556776677899999999999999998777776653  346


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      ++.+++++++||+++.......++.+.+.+..+.+....|+..+|
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            778899999999999998888899999988777755555565544

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.53  E-value=2.8e-14  Score=122.79  Aligned_cols=118  Identities=16%  Similarity=0.145  Sum_probs=97.3

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc-c-HHHH
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-D-KDRI  115 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i-~-~~~~  115 (223)
                      +|||||+|.||..+|+.+...|++|.+||+++...+.+...|....++.++++++||+|++|+|.++.++.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            5899999999999999999999999999998754555556677666789999999999999999877776664 2 3467


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      +.+++++++||+++....+..++.+.+++..+......|+
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~  120 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS  120 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCC
Confidence            7889999999999999988899999999877664433333

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.50  E-value=1.7e-13  Score=118.48  Aligned_cols=114  Identities=18%  Similarity=0.260  Sum_probs=97.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhccc---CCEEEEcCCCChhhhhcccHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~---aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      ++|||||+|.||..+|+.+...|++|.+||+++...+.....|.....++++++++   +|+|++|+|..+.++.++ ..
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence            47999999999999999999999999999998644444555677777789998876   699999999877777776 46


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEee
Q 027408          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lD  153 (223)
                      .+..+++|.++||+++....+..++.+.+++..+.  .+|
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            77889999999999999999999999999888776  355

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.49  E-value=1.7e-13  Score=118.39  Aligned_cols=121  Identities=12%  Similarity=0.131  Sum_probs=100.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~  114 (223)
                      ++|||||+|.||..+|+.+...|++|.+||+++...+.....+.....++.+++++||+|++|+|....++.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            479999999999999999999999999999987555555555776677899999999999999997766666653  346


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~  157 (223)
                      ++.++++.++||++++.+.....+.+.+.+..+.+...-|...
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~  124 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRT  124 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCC
Confidence            7778999999999999999999999999998888544444443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.48  E-value=1.8e-13  Score=107.35  Aligned_cols=104  Identities=21%  Similarity=0.355  Sum_probs=75.6

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ..|.||++.|+|||.+|+.+|+.|+++|++|++++..|...-.+...|++.. +++++++++|+++.++.    ...++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG----~~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATG----NKDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCC----CccccC
Confidence            4689999999999999999999999999999999997744444555677654 89999999999988876    356788


Q ss_pred             HHHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 027408          112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~-vd~~al~~  140 (223)
                      .+.|.+||+|+++.|++.-.. +|.+.|.+
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            999999999999999987554 55555443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.46  E-value=3e-13  Score=116.38  Aligned_cols=96  Identities=21%  Similarity=0.339  Sum_probs=79.1

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      +.++.|++++|+|+|.||+.+|+.|+++|++|.+++|++...+.+...+...  .++++++++++|+|+.|+|.     .
T Consensus       146 ~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-----~  220 (287)
T TIGR02853       146 DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-----L  220 (287)
T ss_pred             CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-----H
Confidence            3579999999999999999999999999999999999764333333445432  24677889999999999993     4


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +++++.++.|++++++||++..+
T Consensus       221 ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       221 VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             HhCHHHHhcCCCCeEEEEeCcCC
Confidence            67889999999999999999744

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.45  E-value=7.1e-13  Score=114.73  Aligned_cols=113  Identities=19%  Similarity=0.226  Sum_probs=96.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhccc---CCEEEEcCCCChhhhhcccHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~---aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      ++|||||+|.||+.+|+.|...|.+|.+||+++...+...+.|+....+++++++.   +|+|++++|..+.+..++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            47999999999999999999999999999998754445556677777789998875   699999999776766665 46


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEE
Q 027408          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a  150 (223)
                      ....++++.++||++++.......+.+.+++..+.+.
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~  116 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV  116 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE
Confidence            7788999999999999999999999999999888744

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.43  E-value=6.1e-13  Score=121.77  Aligned_cols=124  Identities=12%  Similarity=0.080  Sum_probs=104.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----CCe---ecCCHHhhccc---CCEEEEcCCCChhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK---FEEDLDTMLPK---CDIVVVNTPLTEKT  106 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~---~~~~l~e~l~~---aDvVv~~~p~~~~t  106 (223)
                      .+||+||+|.||+.+|+.|...|++|.+|||++...+.+.+.    |..   ...+++|+++.   +|+|++++|..+.+
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            369999999999999999999999999999986443333221    432   45789998875   99999999999988


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP  161 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~  161 (223)
                      ..++ ...++.+++|.++||++....-+...+.+.+++..+.+...-|...++..
T Consensus        87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA  140 (493)
T PLN02350         87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGA  140 (493)
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHh
Confidence            8887 57888999999999999999999999999999999998888888776643

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.43  E-value=1.4e-12  Score=117.31  Aligned_cols=104  Identities=20%  Similarity=0.290  Sum_probs=87.7

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++.....+...|+.. .+++++++.+|+|+.++.    +.++++
T Consensus       208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG----~~~vI~  282 (425)
T PRK05476        208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATG----NKDVIT  282 (425)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCC----CHHHHH
Confidence            357999999999999999999999999999999998775444444556654 478999999999988764    456788


Q ss_pred             HHHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 027408          112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~-vd~~al~~  140 (223)
                      .+.+..||+|++++|+++... +|.++|.+
T Consensus       283 ~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        283 AEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            999999999999999999876 77777754

>PLN02256 arogenate dehydrogenase

Probab=99.41  E-value=5.7e-12  Score=109.25  Aligned_cols=109  Identities=18%  Similarity=0.317  Sum_probs=84.8

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc-ccCCEEEEcCCCChhhhhccc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l-~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      +-.+++|+|||+|.||+++|+.++..|.+|++|+++. ..+.+...|+....+.++++ .++|+|++|+|.. .+..++ 
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~-~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl-  109 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD-YSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVL-  109 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc-HHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHH-
Confidence            4467899999999999999999999999999999875 33455567776667888886 4799999999943 344444 


Q ss_pred             HHH-HhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          112 KDR-IAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       112 ~~~-~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ++. ...++++++|+|++..+-+..+++.+.+..
T Consensus       110 ~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256        110 RSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             HhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            334 566899999999999776666666666644

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.38  E-value=2.5e-12  Score=110.95  Aligned_cols=119  Identities=16%  Similarity=0.098  Sum_probs=96.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~  114 (223)
                      ++|||||+|.||..+|+.|...|++|.+||+++. .+.....|.....+..+++++||+|++|+|..+..+.++.  ...
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~   79 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC   79 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence            3799999999999999999999999999998763 3444456777777899999999999999998777666552  235


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      ++.+++|.++|+++....-+...+.+.+.+..+.+...-|..
T Consensus        80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG  121 (292)
T PRK15059         80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG  121 (292)
T ss_pred             hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence            677899999999999999889999999988877744433443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.37  E-value=5.6e-12  Score=109.07  Aligned_cols=118  Identities=16%  Similarity=0.187  Sum_probs=94.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhh---cccCCEEEEcCCCChhhhhcccHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~---l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      ++|||||+|.||..+|+.+...|++|.+|||++...+...+.+.....+++++   +.++|+|++++|.. .+..++ ++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            47999999999999999999999999999998754444555555545566665   45689999999976 666665 56


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      ....+++|.++||++.+...+...+.+.+++..+.+...-|..
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG  121 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG  121 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence            7788999999999999998999999999988877744444443

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.36  E-value=2.9e-12  Score=111.74  Aligned_cols=96  Identities=16%  Similarity=0.240  Sum_probs=79.1

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      ..|.|++|||||+|+||+++|+.|+.+|++|+++++.. ...+.+...|+... +.++++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            36899999999999999999999999999998887653 34455556677655 899999999999999996655 5666


Q ss_pred             cHHHHhcCCCCcEEEEcCCC
Q 027408          111 DKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg  130 (223)
                      +++.+..|++|++| ..+.|
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCC
Confidence            67888899999988 56666

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.36  E-value=7e-12  Score=112.45  Aligned_cols=105  Identities=17%  Similarity=0.287  Sum_probs=89.3

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      +..+.|++|+|+|+|.||+.+|+.++.+|++|+++|+++...+.+...|+... ++++.+..+|+|+.++.    +..++
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG----~~~~i  271 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTG----NKDII  271 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCC----CHHHH
Confidence            34579999999999999999999999999999999998766677778887654 67888899999998765    35567


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 027408          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~-vd~~al~~  140 (223)
                      +...+..||+|++++|++++.+ +|..+|..
T Consensus       272 ~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         272 TGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            7888999999999999999876 77777654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02712 arogenate dehydrogenase

Probab=99.34  E-value=7.3e-12  Score=118.82  Aligned_cols=115  Identities=14%  Similarity=0.209  Sum_probs=89.7

Q ss_pred             CcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcc-cCCEEEEcCCCChhhh
Q 027408           29 YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTR  107 (223)
Q Consensus        29 ~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~-~aDvVv~~~p~~~~t~  107 (223)
                      ..+.++.+++|||||+|.||+.+|+.++.+|++|.+||++.. .+.+.+.|+....++++++. ++|+|++|+|. ..+.
T Consensus       362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~-~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~  439 (667)
T PLN02712        362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY-SDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTE  439 (667)
T ss_pred             hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH-HHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHH
Confidence            346788999999999999999999999999999999999753 24455677766678888875 59999999994 4566


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      .++.+-....||++++++|++.++-...+++.+.+..+
T Consensus       440 ~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~  477 (667)
T PLN02712        440 KVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD  477 (667)
T ss_pred             HHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence            66654444478999999999998855555555555443

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.34  E-value=5.3e-12  Score=115.27  Aligned_cols=122  Identities=14%  Similarity=0.176  Sum_probs=101.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----C--CeecCCHHhhcc---cCCEEEEcCCCChhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR  107 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g--~~~~~~l~e~l~---~aDvVv~~~p~~~~t~  107 (223)
                      .+|||||+|.||..+|+.|...|++|.+|||++...+...+.    |  +....+++++++   ++|+|++++|..+.+.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            479999999999999999999999999999987443333221    3  335678999886   5899999999888888


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      .++ ++....+++|.+|||++.+...|...+.+.+.+..+.+...-|...++
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            877 568888999999999999999999999999999999977666776654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.31  E-value=1.1e-11  Score=107.06  Aligned_cols=95  Identities=25%  Similarity=0.320  Sum_probs=80.0

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--CCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      .++.|++++|+|+|.+|+.+++.|+.+|++|.++||++...+.++..|....  .++.+.++++|+|+.++|     ..+
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p-----~~~  222 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIP-----ALV  222 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCC-----hhh
Confidence            4688999999999999999999999999999999998644455556666533  467788899999999998     356


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++++.++.|++++++||++...
T Consensus       223 i~~~~l~~~~~g~vIIDla~~p  244 (296)
T PRK08306        223 LTKEVLSKMPPEALIIDLASKP  244 (296)
T ss_pred             hhHHHHHcCCCCcEEEEEccCC
Confidence            7899999999999999998643

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.30  E-value=8.5e-12  Score=107.35  Aligned_cols=116  Identities=13%  Similarity=0.140  Sum_probs=93.1

Q ss_pred             EEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHHHhcC
Q 027408           41 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDRIAKM  118 (223)
Q Consensus        41 IiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~~~~m  118 (223)
                      |||+|.||..+|+.|...|++|.+|||++...+...+.|+....++.++++++|+|++|+|..+.+..++.  ......+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999987555555566776677899999999999999997666666652  4667788


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408          119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus       119 k~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      +++.++||++....-....+.+.+.+..+.+...-|+.
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~G  118 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSG  118 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCC
Confidence            99999999998777777888888887777643333443

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.29  E-value=5.3e-11  Score=103.25  Aligned_cols=149  Identities=15%  Similarity=0.158  Sum_probs=93.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCC--eecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      ..++|+|||+|.||..+|+.++..|.  +|.+||+++...+.+...|+  ....++++.++++|+|++|+|... ... +
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~-v   82 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGA-V   82 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHH-H
Confidence            44789999999999999999998885  89999997644444555554  234577888999999999999432 222 3


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEe-eCCCCC---CCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG-DVWNPQ---PAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~l-Dv~~~e---p~~~~~~l~~~~nv~~tPH~a~~t~~~~  186 (223)
                      .++....++++.++++++..+.--.+++.+.+.. .+..... .++..|   |.....+++...++++||+-+ .+.+..
T Consensus        83 ~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~-~~~~~~  160 (307)
T PRK07502         83 AAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEG-TDPAAV  160 (307)
T ss_pred             HHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCC-CCHHHH
Confidence            3556677899999999876542222223222222 2221211 222211   111223566667789999654 344443


Q ss_pred             H
Q 027408          187 L  187 (223)
Q Consensus       187 ~  187 (223)
                      +
T Consensus       161 ~  161 (307)
T PRK07502        161 A  161 (307)
T ss_pred             H
Confidence            3

>PLN02858 fructose-bisphosphate aldolase

Probab=99.28  E-value=1.4e-11  Score=124.62  Aligned_cols=123  Identities=15%  Similarity=0.075  Sum_probs=104.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc--cH
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DK  112 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i--~~  112 (223)
                      +.++||+||+|.||..+|+.|...|++|.+|||++...+.+...|....+++.|+.++||+|++|+|..+.++.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            4678999999999999999999999999999998765556666788888899999999999999999888888776  35


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC--ccEEEeeCCCC
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH--IAGYSGDVWNP  157 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~--i~~a~lDv~~~  157 (223)
                      ..++.+++|.++|++|....-....+.+.+++..  +.+...-|+..
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg  129 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKG  129 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCC
Confidence            6788899999999999999999999999998877  65444444543

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.27  E-value=2e-11  Score=111.48  Aligned_cols=121  Identities=10%  Similarity=0.109  Sum_probs=98.1

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-----CCeecCCHHhhc---ccCCEEEEcCCCChhhhhc
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTML---PKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~e~l---~~aDvVv~~~p~~~~t~~~  109 (223)
                      .|||||+|.||..+|+.|...|++|.+|||++...+...+.     ++....++++++   +++|+|++++|..+.+..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            38999999999999999999999999999987444433332     244556777776   4689999999987777777


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      + .+....+++|.+|||++....-|...+.+.+++..+.+...-|...++
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~  129 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE  129 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence            6 567788999999999999999999999999999888866666666543

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.27  E-value=1.1e-10  Score=106.04  Aligned_cols=134  Identities=19%  Similarity=0.293  Sum_probs=96.3

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      ++|+||| +|.||+++|+.++..|.+|.+|++++.. .+.+...|+....+.++.+.++|+|++|+|.. .+..++ ++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence            4799997 8999999999999999999999987633 24455667766668888999999999999953 333333 566


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC-CCCCccCCCCeEEccCC
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHV  178 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~-~~~~l~~~~nv~~tPH~  178 (223)
                      ...+++++++++++..+....+++.+.+..+ ..  .+.   ..|.. +..+++....+++||+-
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~---~HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILP---THPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEE---cCCCCCCCCcccCCCEEEEecCC
Confidence            7788999999999986655555666555432 22  222   22331 12356667788999964

>PLN02858 fructose-bisphosphate aldolase

Probab=99.26  E-value=3.3e-11  Score=121.91  Aligned_cols=123  Identities=15%  Similarity=0.089  Sum_probs=101.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc--cH
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DK  112 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i--~~  112 (223)
                      ..++|||||+|.||..+|+.|...|++|.+||+++...+.....|.....++.+++++||+|++|+|..+.++.++  ..
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            3588999999999999999999999999999998644444555566667789999999999999999888887776  34


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh--CCccEEEeeCCCC
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS--GHIAGYSGDVWNP  157 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~--g~i~~a~lDv~~~  157 (223)
                      ..++.+++|.++||+|....-....+.+.+.+  ..+.+....|...
T Consensus       403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg  449 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGG  449 (1378)
T ss_pred             hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCC
Confidence            57888999999999999998888999999988  5666444444443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.26  E-value=1e-11  Score=89.34  Aligned_cols=90  Identities=21%  Similarity=0.358  Sum_probs=67.8

Q ss_pred             EEEEEcccHHHHHHHHHHccCC---CeEE-EEcCCCCC-hhHHHhhCCeecC-CHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFN---CNLL-YHDRVKMD-PQLEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G---~~V~-~~d~~~~~-~~~~~~~g~~~~~-~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ||||||+|+||+++++.+...|   .+|. +++|++.. .+.++++++.... +..++++++|+|++|+|  |....-+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~--p~~~~~v~   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK--PQQLPEVL   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S---GGGHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC--HHHHHHHH
Confidence            7999999999999999999999   8888 55887633 3344566665555 79999999999999999  44333344


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q 027408          112 KDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg  130 (223)
                      .+. ....++.++|+++.|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            445 667789999998765

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.25  E-value=2.5e-11  Score=103.04  Aligned_cols=127  Identities=15%  Similarity=0.163  Sum_probs=104.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc-
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-  111 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~-  111 (223)
                      ..+.++||+||+|.||..++..|-+.|++|++|||+....+.+++.|.....++.|+.+.||+|+.++|.....+.++. 
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g  111 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG  111 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence            3468899999999999999999999999999999987666777788998889999999999999999998887777653 


Q ss_pred             -HHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408          112 -KDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus       112 -~~~~~~mk~ga~i-vn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                       ...++.++++... |+.+.-...-...|.+++.....++.--.|...-+
T Consensus       112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~  161 (327)
T KOG0409|consen  112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVK  161 (327)
T ss_pred             CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCch
Confidence             3466777787777 89998888888889999998877744444444433

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.23  E-value=1.8e-10  Score=98.66  Aligned_cols=143  Identities=16%  Similarity=0.157  Sum_probs=88.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-ecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      ++|+|||+|.||.++|..|+..|.+|.+||+++...+.+...|.. ...+..+.++++|+|++|+|..... . +.++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~-~-~~~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLL-P-PSEQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHH-H-HHHHHH
Confidence            479999999999999999999999999999976444444444532 2222335678999999999943322 2 235667


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEe-eCCCCCCC---CCCCCccCCCCeEEccCCCCCcHHHH
Q 027408          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG-DVWNPQPA---PKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~l-Dv~~~ep~---~~~~~l~~~~nv~~tPH~a~~t~~~~  186 (223)
                      ..+++++++++++.-+.    .+.+++........+. -++..|..   .....++....+++||+-.. +.+..
T Consensus        79 ~~l~~~~ii~d~~Svk~----~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~-~~~~~  148 (279)
T PRK07417         79 PALPPEAIVTDVGSVKA----PIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT-DLNAL  148 (279)
T ss_pred             HhCCCCcEEEeCcchHH----HHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC-CHHHH
Confidence            77899999999887442    2333333222222221 11222211   01122566778899996543 34443

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.22  E-value=4.2e-11  Score=93.67  Aligned_cols=89  Identities=21%  Similarity=0.376  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC-ChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh-ccc
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG-MFD  111 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~-~i~  111 (223)
                      |++|+|+|||+|..|++.|..|+..|.+|++-.+... +.+.+++.|++.. +.+|+++++|+|++.+|  ++... +..
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~P--D~~q~~vy~   78 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLP--DEVQPEVYE   78 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S---HHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCC--hHHHHHHHH
Confidence            6899999999999999999999999999998887654 5667778888765 89999999999999999  33333 345


Q ss_pred             HHHHhcCCCCcEEE
Q 027408          112 KDRIAKMKKGVLIV  125 (223)
Q Consensus       112 ~~~~~~mk~ga~iv  125 (223)
                      ++....||+|+.++
T Consensus        79 ~~I~p~l~~G~~L~   92 (165)
T PF07991_consen   79 EEIAPNLKPGATLV   92 (165)
T ss_dssp             HHHHHHS-TT-EEE
T ss_pred             HHHHhhCCCCCEEE
Confidence            77888999999876

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.20  E-value=9e-11  Score=102.14  Aligned_cols=97  Identities=21%  Similarity=0.323  Sum_probs=73.7

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      |+|++|||||+|+||+++|+.|+.+|++|+++++.. ...+.+.+.|+... +..+++++||+|++++|.... ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            579999999999999999999999999987665433 33344445677654 688899999999999994423 334456


Q ss_pred             HHHhcCCCCcEEEEcCCCCcc
Q 027408          113 DRIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~v  133 (223)
                      +....++++. +|.++.|--+
T Consensus        79 ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCccH
Confidence            6777888885 7888877644

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=99.20  E-value=2.6e-11  Score=108.73  Aligned_cols=102  Identities=23%  Similarity=0.272  Sum_probs=80.0

Q ss_pred             CCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCC------CCChhHHHhhCCeecCCHHhhcccCC
Q 027408           21 EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV------KMDPQLEKETGAKFEEDLDTMLPKCD   94 (223)
Q Consensus        21 ~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~------~~~~~~~~~~g~~~~~~l~e~l~~aD   94 (223)
                      -|.+..+......|.||+|+|||+|++|++.|..++..|.+|++--|.      ..+.+.+...|+.. .+++|++++||
T Consensus        21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~AD   99 (487)
T PRK05225         21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQAD   99 (487)
T ss_pred             ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCC
Confidence            477665544446799999999999999999999999999998733332      33344444456654 58999999999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEE
Q 027408           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      +|++++|++.  .+.++++.++.||+|+.+.
T Consensus       100 vVviLlPDt~--q~~v~~~i~p~LK~Ga~L~  128 (487)
T PRK05225        100 LVINLTPDKQ--HSDVVRAVQPLMKQGAALG  128 (487)
T ss_pred             EEEEcCChHH--HHHHHHHHHhhCCCCCEEE
Confidence            9999999883  6777799999999999874

>PLN02712 arogenate dehydrogenase

Probab=99.20  E-value=2.6e-10  Score=108.27  Aligned_cols=109  Identities=17%  Similarity=0.272  Sum_probs=80.7

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc-ccCCEEEEcCCCChhhhhcccH
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      -+.++|||||+|.||+.+|+.++.+|++|.+||++. ..+.+...|+....++++++ .++|+|++|+|. ..+..++..
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~-~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~  127 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD-HSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS  127 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence            345789999999999999999999999999999974 33456667877777888866 569999999994 345555544


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      -.+..++++++|+|++.-+..-.+++.+.+..
T Consensus       128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~  159 (667)
T PLN02712        128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE  159 (667)
T ss_pred             hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence            33467899999999975442222334444433

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.16  E-value=1.6e-09  Score=93.11  Aligned_cols=140  Identities=14%  Similarity=0.125  Sum_probs=94.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------------------------hCCeecCCHHhhcc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------------TGAKFEEDLDTMLP   91 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~l~e~l~   91 (223)
                      ++|+|||.|.||..+|..+...|.+|.+||+++...+....                         .++...+++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            58999999999999999999899999999987532221110                         12334578888899


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCC
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  171 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~n  171 (223)
                      +||+|+.|+|...+.+..+-++..+.++++++|++.+.+  +....+.+.+... -+..++-.  .      .|.+..+.
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~-~r~vg~Hf--~------~p~~~~~l  152 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRP-EKFLALHF--A------NEIWKNNT  152 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCc-ccEEEEcC--C------CCCCcCCe
Confidence            999999999976666665556777788889988554433  3445666665432 23344432  1      23445677


Q ss_pred             eEEccCCCCCcHHHHHH
Q 027408          172 QAMTPHVSGTTIDAQLR  188 (223)
Q Consensus       172 v~~tPH~a~~t~~~~~~  188 (223)
                      +.++|+-. .+.+..++
T Consensus       153 vevv~~~~-t~~~~~~~  168 (287)
T PRK08293        153 AEIMGHPG-TDPEVFDT  168 (287)
T ss_pred             EEEeCCCC-CCHHHHHH
Confidence            88888644 34554443

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.16  E-value=5.4e-10  Score=99.09  Aligned_cols=142  Identities=20%  Similarity=0.191  Sum_probs=90.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--CCe--ecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~--~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ++|+|||+|.||.++|+.++..|.+|.+|++++.........  ++.  ..+++++++++||+|++|+|.. .+..++ +
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl-~   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALL-A   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHH-H
Confidence            479999999999999999999999988888776444333333  221  2356788899999999999953 344443 4


Q ss_pred             HHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC---------CCCCccCCCCeEEccCCCCCc
Q 027408          113 DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---------KDHPWRYMPNQAMTPHVSGTT  182 (223)
Q Consensus       113 ~~~~-~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~---------~~~~l~~~~nv~~tPH~a~~t  182 (223)
                      +... .++++++|++++.-+.-..+++.+.+. ....  .++.+   |.+         ....++.....++||+-. .+
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~-~~  151 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDH-TD  151 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCC-CC
Confidence            4444 478999999988766433333333322 2222  23322   332         123466666788999643 33


Q ss_pred             HHHHH
Q 027408          183 IDAQL  187 (223)
Q Consensus       183 ~~~~~  187 (223)
                      .+..+
T Consensus       152 ~~~~~  156 (359)
T PRK06545        152 PDAVA  156 (359)
T ss_pred             HHHHH
Confidence            44433

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.16  E-value=8.2e-10  Score=96.37  Aligned_cols=114  Identities=13%  Similarity=0.158  Sum_probs=86.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------h---------CCeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------T---------GAKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~---------g~~~~~~l~e~l~~aDvV   96 (223)
                      ++|||||.|.||..+|..+...|++|.+||+++...+....           .         .+...+++++.+++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            68999999999999999999999999999997632221100           1         124567899999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEee
Q 027408           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (223)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lD  153 (223)
                      +.++|.+.+.+..+.++.-+.++++++|-..+.  -+...++.+.++ +.-+..++-
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS--~l~~s~la~~~~-~p~R~~g~H  141 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAIIASSTS--GLLPTDFYARAT-HPERCVVGH  141 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCC--ccCHHHHHHhcC-CcccEEEEe
Confidence            999999999998888899999999996644444  346677777764 333444554

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.15  E-value=7.7e-10  Score=94.56  Aligned_cols=100  Identities=16%  Similarity=0.291  Sum_probs=71.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCCe-ecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~-~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      ++|+|||+|.||+++|..|+..|.  +|++||+++...+.+...|+. ...+.+++. ++|+|++|+|..... .++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~-~~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAII-EIL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHH-HHH-HH
Confidence            479999999999999999988775  799999976444444555653 345677765 599999999944332 222 45


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ... ++++++|++++.-    ...+.+.+..
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            556 8899999997552    3445555544

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.15  E-value=2.5e-10  Score=96.86  Aligned_cols=104  Identities=13%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC----eEEEE-cCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYH-DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ++|||||+|.||.++++.|...|+    +|++| +|++...+.+.+.|+....+..++++++|+|++|+| .+....++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            579999999999999999988887    88888 887644445556788777788899999999999997 33444444 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      .+....++++.++|++..|  +..+.+.+.+..
T Consensus        79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence            4555667889999988765  466666665543

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.15  E-value=1.1e-09  Score=93.68  Aligned_cols=135  Identities=20%  Similarity=0.174  Sum_probs=91.5

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCC--CCChhHHHhhCCeec--CCH-HhhcccCCEEEEcCCCChhhhhcc
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--KMDPQLEKETGAKFE--EDL-DTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~--~~~~~~~~~~g~~~~--~~l-~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      -++|+|+|+|.||+++|+.++..|..+.++++.  ....+.+..+|+...  .+. .+...++|+|++++|-. .|..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence            468999999999999999999999987555544  333344445666431  233 67778899999999933 223332


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC---CCCCccCCCCeEEccCC
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---KDHPWRYMPNQAMTPHV  178 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~---~~~~l~~~~nv~~tPH~  178 (223)
                       ++....+|+|++|++++.-+---.+++.+.+.+.. ...     ...|..   ...+++....+++||.-
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~v-----g~HPM~G~~~~~~lf~~~~~vltp~~  145 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFV-----GGHPMFGPEADAGLFENAVVVLTPSE  145 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeE-----ecCCCCCCcccccccCCCEEEEcCCC
Confidence             56666899999999999877555555555554432 222     233543   24577777889999953

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.14  E-value=1.5e-09  Score=93.40  Aligned_cols=115  Identities=11%  Similarity=0.103  Sum_probs=83.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------h-----------------CCeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------T-----------------GAKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------~-----------------g~~~~~~l~e~l~~   92 (223)
                      ++|+|||+|.||..+|..+...|++|++||+++...+...+       .                 ++....++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            57999999999999999999999999999997633322110       0                 12345678889999


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~i-vn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ||+|+.|+|...+.+..+..+..+.+++++++ +|+|.-.   ...+.+.++ ..-+..++..+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~-~~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTK-RPERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcC-CcccEEEEecC
Confidence            99999999987776666656677788999877 6777644   455665553 23334566655

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.11  E-value=2e-09  Score=92.87  Aligned_cols=104  Identities=16%  Similarity=0.185  Sum_probs=77.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhh------------C-CeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKET------------G-AKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~------------g-~~~~~~l~e~l~~   92 (223)
                      ++|+|||+|.||..+|..+...|++|++||+++...+.           ..+.            + ....++. +.+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD   83 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence            58999999999999999999999999999997633221           1111            1 2233344 56799


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHh
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSS  144 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv-n~srg~~vd~~al~~~L~~  144 (223)
                      ||+|+.|+|.+++.+..+..+..+.++++++|+ |+|.-   ....+.+.+..
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~  133 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR  133 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence            999999999999988888788888899999887 55544   44556666543

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.10  E-value=3.1e-10  Score=97.05  Aligned_cols=103  Identities=16%  Similarity=0.313  Sum_probs=78.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC----eEEEEcCCCCChhHHH-hhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~-~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ++|||||+|+||.++++.|...|.    +|+++||++...+... ++|+....+..+++++||+|++|+|. .....++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence            589999999999999999987664    6999999764433333 46776667888899999999999993 3344433 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                      ++....++++.++|++..|-  +.+.|.+.|.
T Consensus        81 ~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~  110 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAGK--SIKSTENEFD  110 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCCC--cHHHHHHhcC
Confidence            45556678889999998875  5566666664

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.06  E-value=1.5e-09  Score=98.03  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=77.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-ecCCHHhh---------------cccCCEEEEcC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTM---------------LPKCDIVVVNT  100 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~e~---------------l~~aDvVv~~~  100 (223)
                      ++|+|||+|.||..+|..|+..|++|++||+++...+........ ....++++               +++||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            689999999999999999999999999999976433332211111 11233333               34799999999


Q ss_pred             CCC------hhhhhc--ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          101 PLT------EKTRGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       101 p~~------~~t~~~--i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      |..      ++...+  ..+.....+++|+++|+.|.-.+-..+.+...+.+.
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            953      111222  235667888999999999998888888888777653

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.06  E-value=7.8e-10  Score=96.08  Aligned_cols=83  Identities=19%  Similarity=0.263  Sum_probs=67.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      ++++|+|||+|.||+.+|+.|...|++|.+|+|+..             .+++++++++|+|++++|. +....++ +..
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~-~~l   67 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA-EQV   67 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH-HHH
Confidence            568999999999999999999999999999999642             3678888999999999996 4555555 333


Q ss_pred             Hh-cCCCCcEEEEcCCCCc
Q 027408          115 IA-KMKKGVLIVNNARGAI  132 (223)
Q Consensus       115 ~~-~mk~ga~ivn~srg~~  132 (223)
                      .. .+++++++|++++|-.
T Consensus        68 ~~~~~~~~~ivi~~s~gi~   86 (308)
T PRK14619         68 QALNLPPETIIVTATKGLD   86 (308)
T ss_pred             HHhcCCCCcEEEEeCCccc
Confidence            33 4788999999987543

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=99.06  E-value=2.4e-09  Score=87.58  Aligned_cols=109  Identities=22%  Similarity=0.267  Sum_probs=84.7

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhhCCeecCCHHhhcc-cCCEEEEcCCCChhhhhc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~e~l~-~aDvVv~~~p~~~~t~~~  109 (223)
                      .++.||+|+|+|+|+||+.+|+.|..+|++|+++|+++...+ ....++...+ +.++++. +||+++.|..     .++
T Consensus        24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~   97 (200)
T cd01075          24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGV   97 (200)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----ccc
Confidence            468999999999999999999999999999999998753222 2233466555 3466664 7999987776     468


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      ++++.++.|+ ..+|+..+.+.+-| ..-.+.|++..+.
T Consensus        98 I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          98 INDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             cCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            8999999997 45788888887766 5666778887776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.06  E-value=7.1e-09  Score=92.04  Aligned_cols=122  Identities=20%  Similarity=0.271  Sum_probs=82.6

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      +...+|+|||+ |.||+++|+.|+. ++.+|++||+...           ...++++.+++||+|++|+|.... ..++ 
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~-~~~l-   68 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRHT-AALI-   68 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHH-HHHH-
Confidence            45679999999 9999999999985 5889999998421           124678889999999999993222 2222 


Q ss_pred             HHHHh---cCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC--CCCCccCCCCeEEccC
Q 027408          112 KDRIA---KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP--KDHPWRYMPNQAMTPH  177 (223)
Q Consensus       112 ~~~~~---~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~--~~~~l~~~~nv~~tPH  177 (223)
                      ++...   .++++++|+|++.-+.    .+.+++......     +....|..  ..+.++...++++||.
T Consensus        69 ~~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~~-----fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         69 EEYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQAE-----VVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             HHHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCCC-----EEeeCCCCCCCCCcccCCCeEEEeCC
Confidence            34433   3799999999987552    222222222222     22334543  2345777778999986

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.05  E-value=1.5e-09  Score=89.53  Aligned_cols=118  Identities=20%  Similarity=0.248  Sum_probs=102.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc---ccCCEEEEcCCCChhhhhcccHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---PKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l---~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      ++||.||+|+||..+++++...|.+|++||+++...+.....++....++++++   ...-+|-+.+|....|..++ ++
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence            579999999999999999999999999999998777777777887778888876   45689999999876666665 67


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~  157 (223)
                      +-..|.+|-++|+-+...--|.....+.|++..|.  .+||-..
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GTS  121 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGTS  121 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccCC
Confidence            77889999999999999999999999999999998  7887443

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.05  E-value=2.3e-09  Score=97.01  Aligned_cols=137  Identities=10%  Similarity=0.091  Sum_probs=90.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe----------------ecCCHHhhcccCCEEEE
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK----------------FEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~----------------~~~~l~e~l~~aDvVv~   98 (223)
                      ..++|||||+|.||..+|..+.. |++|++||+++...+... .|..                .+++..+.+++||++++
T Consensus         5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii   82 (425)
T PRK15182          5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII   82 (425)
T ss_pred             CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence            34789999999999999999877 699999999874444333 1211                22333456889999999


Q ss_pred             cCCCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHH-HHh-CCcc-E-EEeeCCCCCCCCCCCC-
Q 027408           99 NTPLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDA-CSS-GHIA-G-YSGDVWNPQPAPKDHP-  165 (223)
Q Consensus        99 ~~p~~------~~t~~~i--~~~~~~~mk~ga~ivn~srg~~vd~~al~~~-L~~-g~i~-~-a~lDv~~~ep~~~~~~-  165 (223)
                      |+|..      ++...+.  .+...+.+++|+++|+.|.-.+-..+.+.+. +++ ..+. + ...=+|.+||...... 
T Consensus        83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~  162 (425)
T PRK15182         83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKK  162 (425)
T ss_pred             EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccc
Confidence            99944      2223333  3466788999999999999998888876554 443 1222 1 1111366787765443 


Q ss_pred             --ccCCCCeE
Q 027408          166 --WRYMPNQA  173 (223)
Q Consensus       166 --l~~~~nv~  173 (223)
                        +...+.++
T Consensus       163 ~~~~~~~riv  172 (425)
T PRK15182        163 HRLTNIKKIT  172 (425)
T ss_pred             ccccCCCeEE
Confidence              34444443

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.04  E-value=1.2e-09  Score=93.64  Aligned_cols=106  Identities=14%  Similarity=0.212  Sum_probs=77.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCC----CeEEEEcCCCC-C-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM-D-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G----~~V~~~d~~~~-~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      ++++|+|||+|+||.++++.|...|    .+|.+++|+.. . ......+++....+..+++++||+|++++|.... ..
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~-~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDV-AE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHH-HH
Confidence            4579999999999999999998777    67999998652 2 2233445776667888899999999999993332 22


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ++ .+....++++.+||++..|-  +.+.+.+.+..
T Consensus        81 vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~~  113 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQK  113 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCC
Confidence            22 45556678899999987654  55666666543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.03  E-value=9.2e-09  Score=88.62  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=79.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------hC-------------CeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~e~l~~   92 (223)
                      ++|+|||.|.||..+|..+...|++|.+||+++...+....           .+             +...++++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            68999999999999999999999999999997533222110           12             23445665 4789


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv-n~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      ||+|+.++|..++.+..+-.+..+.++++++|+ |+|.-   +...+.+.+.. .-+..++..+.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~s~la~~~~~-~~r~~g~h~~~  144 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSI---SITRLASATDR-PERFIGIHFMN  144 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC---CHHHHHhhcCC-cccEEEeeccC
Confidence            999999999877766665567778889999998 44443   33466666532 22333444443

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=99.03  E-value=1.3e-09  Score=94.66  Aligned_cols=111  Identities=19%  Similarity=0.325  Sum_probs=90.0

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      -+.||++.|.|||..|+.+|.++++.|++|+++...|...-.+.-.|++.. .++++...+|+++.++-    ++++|..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCccCH
Confidence            479999999999999999999999999999999887744434444566654 79999999999998886    6788999


Q ss_pred             HHHhcCCCCcEEEEcCCCCc-cCHHHHHHH-HHhCCcc
Q 027408          113 DRIAKMKKGVLIVNNARGAI-MDTQAVVDA-CSSGHIA  148 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~-vd~~al~~~-L~~g~i~  148 (223)
                      +.+..||+|+++.|.+.=.+ ||...|.+. .+...++
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr  318 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR  318 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence            99999999999999997655 666666543 3444444

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.02  E-value=1.3e-09  Score=93.08  Aligned_cols=109  Identities=19%  Similarity=0.143  Sum_probs=81.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc--CCCeEE-EEcCCCCC-hhHHHhhCC-eecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLL-YHDRVKMD-PQLEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~--~G~~V~-~~d~~~~~-~~~~~~~g~-~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      ..++|||||+|.||+.+++.+..  .++++. ++|+++.. .+.+..++. ..++++++++.++|+|++|+|...  .. 
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~-   81 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LR-   81 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HH-
Confidence            35799999999999999999975  478865 78886532 233445553 456789999999999999999432  22 


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                        +-....++.|..++..+.+.+.+.++|.++.++++..
T Consensus        82 --e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         82 --AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             --HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence              2234445677778888889888889999988886654

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.02  E-value=2.2e-09  Score=93.95  Aligned_cols=103  Identities=18%  Similarity=0.191  Sum_probs=77.7

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--------C------CeecCCHHhhcccCCEEEEcCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------G------AKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------g------~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .++|+|||+|.||..+|..|...|++|.+|+|++...+.....        +      +...++++++++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            4689999999999999999999999999999975332222221        2      3345688888899999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCC-CccC--HHHHHHHHHh
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARG-AIMD--TQAVVDACSS  144 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg-~~vd--~~al~~~L~~  144 (223)
                      ...    +  ++.++.++++.++|+++.| ..-+  ...+.+.+.+
T Consensus        84 ~~~----~--~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SKA----L--RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hHH----H--HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            441    2  6677889999999999997 3332  4556666654

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.00  E-value=1.2e-08  Score=92.16  Aligned_cols=108  Identities=16%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------------------hC-CeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~l~e~l~~aDvV   96 (223)
                      ++|+|||+|.||..+|..|...|++|++||+++...+....                   .| +...+++++++++||+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            47999999999999999999999999999997532221111                   13 44456788889999999


Q ss_pred             EEcCCCChh------hhhc--ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHH-HHh
Q 027408           97 VVNTPLTEK------TRGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA-CSS  144 (223)
Q Consensus        97 v~~~p~~~~------t~~~--i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~-L~~  144 (223)
                      ++|+|....      ...+  ......+.+++++++|+.|.-.+-..+.+.+. +++
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            999995432      1111  12456677899999999987666666667644 444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.00  E-value=6.4e-09  Score=100.18  Aligned_cols=137  Identities=16%  Similarity=0.160  Sum_probs=93.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChhHHHhhCCe--ecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~--~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ++|+|||+|.||.++++.++..|  .+|++||+++...+.+.+.|+.  ...+++++++++|+|++|+|.. ....++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999888  4799999987555555566653  3456888899999999999943 222222 4


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC---------CCCCccCCCCeEEccCCCC
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---------KDHPWRYMPNQAMTPHVSG  180 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~---------~~~~l~~~~nv~~tPH~a~  180 (223)
                      +..+.++++.+|++++.-+....+.+.+.+....++     +..+-|..         .+..|+...+++++|+-..
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~  153 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET  153 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence            455667889999999875533345555555432222     22333431         2335677778899996543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.99  E-value=1.6e-08  Score=87.13  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=80.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------hC-------------CeecCCHHhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TG-------------AKFEEDLDTM   89 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g-------------~~~~~~l~e~   89 (223)
                      ++|+|||+|.||..+|..+...|++|++||+++...+...+              .+             +...+++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            58999999999999999999999999999997633221100              01             1223345 56


Q ss_pred             cccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      +++||+|+.++|...+.+..+-++.-+.++++++|++.+.|  +....+.+.+.. .-+..++.-+
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~  145 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWF  145 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecC
Confidence            78999999999976655555556666778899999887776  455667777643 2233454433

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.99  E-value=6.5e-09  Score=92.58  Aligned_cols=151  Identities=15%  Similarity=0.225  Sum_probs=100.1

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhhCCe---e---cCCHHhhcccCCEEEEcCCCC-h
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAK---F---EEDLDTMLPKCDIVVVNTPLT-E  104 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~---~---~~~l~e~l~~aDvVv~~~p~~-~  104 (223)
                      .+.+.+|.|+|+|.+|+..++.++.+|++|.++|+++...+.. ..++..   .   ..++.+.++++|+|+.+++.. .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            3678899999999999999999999999999999875322222 233321   1   134667789999999998532 2


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCC--eEEccCCCCC-
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN--QAMTPHVSGT-  181 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~n--v~~tPH~a~~-  181 (223)
                      .+..+++++.++.||++.+|||++-..            .|.+.       ...|...+.|.+...+  .++-||+-+. 
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva~d~------------GG~~e-------~~~~t~~d~p~~~~~Gv~~~~v~nlP~~~  304 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVAIDQ------------GGCVE-------TSRPTTHDQPTYAVHDVVHYCVANMPGAV  304 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEecCC------------CCCcc-------CCcCCCCCCCEEEECCeEEEEeCCccccc
Confidence            345578999999999999999987321            11111       1123333344444333  4666777765 


Q ss_pred             cHHHHHHHHHHHHHHHHHHHc
Q 027408          182 TIDAQLRYAAGVKDMLDRYFK  202 (223)
Q Consensus       182 t~~~~~~~~~~~~~~i~~~~~  202 (223)
                      ..++.+.++..+..-|..+.+
T Consensus       305 p~~aS~~~~~~l~~~l~~~~~  325 (370)
T TIGR00518       305 PKTSTYALTNATMPYVLELAN  325 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            455666666666666666665

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.99  E-value=6.7e-09  Score=80.77  Aligned_cols=111  Identities=17%  Similarity=0.280  Sum_probs=79.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCCh-hHHHhhCC----eecCCHHhhcccCCEEEEcCCCChh-
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKETGA----KFEEDLDTMLPKCDIVVVNTPLTEK-  105 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~-~~~~~~g~----~~~~~l~e~l~~aDvVv~~~p~~~~-  105 (223)
                      ++.+++|+|+|+|.||+.+++.+...| .+|.++|++.... +..+..+.    ....+.+++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            467899999999999999999998885 7899999975332 23334343    1345777888999999999996553 


Q ss_pred             hhh-cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          106 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       106 t~~-~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      ... .+..   ..++++.+++|++..+...  .+.+.+++..+.
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~  134 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK  134 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence            111 2222   2368999999998765443  777777776553

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.99  E-value=1.9e-08  Score=86.88  Aligned_cols=93  Identities=13%  Similarity=0.149  Sum_probs=76.7

Q ss_pred             HHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCc
Q 027408           48 GKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (223)
Q Consensus        48 G~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga  122 (223)
                      |+.+|+.|...|++|++||+++...     +.....|+...++..++++++|+|++|+|..+.+..++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            8899999999999999999875321     23556688888899999999999999999888787776 56889999999


Q ss_pred             EEEEcCCCCccCHHHHHHHHHh
Q 027408          123 LIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       123 ~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ++||+|.   ++.+.+++.|+.
T Consensus       111 IVID~ST---IsP~t~~~~~e~  129 (341)
T TIGR01724       111 VICNTCT---VSPVVLYYSLEK  129 (341)
T ss_pred             EEEECCC---CCHHHHHHHHHH
Confidence            9999975   556677777666

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.98  E-value=9.6e-09  Score=91.63  Aligned_cols=91  Identities=16%  Similarity=0.269  Sum_probs=69.3

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      ..++|+||| +|.||+++|+.|+..|+.|.+||++..             .+.++++++||+|++|+|.... ..++ ++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~~-~~~~-~~  161 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHLT-EEVI-AR  161 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHHH-HHHH-HH
Confidence            558999999 999999999999999999999998531             2567788899999999995543 3333 44


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHH
Q 027408          114 RIAKMKKGVLIVNNARGAIMDTQAVVDA  141 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~vd~~al~~~  141 (223)
                      ... ++++++|++++.-+..-..++.+.
T Consensus       162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        162 LPP-LPEDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             HhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence            445 899999999977553333344443

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.98  E-value=1.2e-08  Score=94.10  Aligned_cols=106  Identities=14%  Similarity=0.125  Sum_probs=78.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-------------------hhC-CeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-------------------ETG-AKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-------------------~~g-~~~~~~l~e~l~~aDvV   96 (223)
                      ++|||||+|.||..+|..+...|++|.+||+++...+...                   ..+ +...+++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            5899999999999999999999999999999763322111                   112 45667899999999999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      +.++|...+.+..+-.+.-+.++++++|.+.+.|-  +...+.+.+..
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi--~~s~l~~~~~~  130 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSGF--LPSDLQEGMTH  130 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCC
Confidence            99999877666655556666678887665554443  35567776644

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.98  E-value=2.4e-08  Score=85.60  Aligned_cols=105  Identities=15%  Similarity=0.194  Sum_probs=77.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhhC-------------CeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~e~l~~   92 (223)
                      ++|+|||.|.||..+|..+...|++|+++|+++...+.           ..+.+             +...++.++ +++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence            57999999999999999999999999999987633211           11112             233455554 789


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ||+|++|+|.+...+..+-++..+.++++++|+..+.|  +....+.+.+..
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            99999999977776666667777888999988555555  566678777743

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.97  E-value=2.4e-08  Score=86.77  Aligned_cols=106  Identities=11%  Similarity=0.128  Sum_probs=73.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhhC-------------CeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~e~l~~   92 (223)
                      ++|+|||.|.||..+|..+...|++|++||+++...+..           ...|             +....++++++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999975322211           1223             2455788899999


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ||+|+.++|...+.+..+-.+.-+..++..++.+.+.  ......+.+.+..
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts--~~~~~~la~~~~~  132 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS--ALLASAFTEHLAG  132 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC--CCCHHHHHHhcCC
Confidence            9999999997655544444444344555555543333  3446667777754

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.96  E-value=8.5e-09  Score=88.78  Aligned_cols=116  Identities=14%  Similarity=0.166  Sum_probs=82.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhhC-------------CeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~e~l~~   92 (223)
                      ++|||||.|.||..+|..+...|++|++||+++...+.           ..+.|             +...+++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999999999998643322           11112             2245677 45799


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~m-k~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      ||+|+-|+|.+.+.+..+..+.-+.+ ++++++++.+.+-.+  .++..++.. .-+..++..|.
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~-~~r~~g~hf~~  146 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKR-PGRVLGLHFFN  146 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CccEEEEecCC
Confidence            99999999999998888776666666 889999877765544  444444432 22334555444

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.95  E-value=2.2e-08  Score=86.89  Aligned_cols=105  Identities=13%  Similarity=0.215  Sum_probs=73.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----hC--------------CeecCCHHhhcccCCEEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TG--------------AKFEEDLDTMLPKCDIVV   97 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g--------------~~~~~~l~e~l~~aDvVv   97 (223)
                      ++|+|||+|.||..+|..+...|++|++||++....+...+     .+              +...+++++.+++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            58999999999999999999999999999987533222211     11              234457888899999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus        98 ~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                      +|+|...+....+..+.-..++++++|+..+.|  +....+.+.+.
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            999966543333334444556777777655544  34567777664

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.93  E-value=3.7e-09  Score=91.93  Aligned_cols=95  Identities=18%  Similarity=0.219  Sum_probs=71.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--------------CCeecCCHHhhcccCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ++|+|||+|.||..+|..|...|.+|.+|++++...+.....              ++....+++++++++|+|++|+|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            479999999999999999999999999999975333323222              244456788888999999999995


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCCcc
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v  133 (223)
                       ..+..++ .+..+.+++++++|+++.|--.
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence             3444443 4566677889999999866443

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.92  E-value=3e-09  Score=83.66  Aligned_cols=92  Identities=22%  Similarity=0.326  Sum_probs=65.4

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--------------CCeecCCHHhhcccCCEEEEcCCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ||+|+|.|++|.++|..+...|.+|..|.|++...+...+.              .+...++++++++++|+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            69999999999999999999999999999975222211111              1234578999999999999999932


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                        ...-+-++...+++++..+|+++.|=
T Consensus        81 --~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 --AHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             --GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             --HHHHHHHHHhhccCCCCEEEEecCCc
Confidence              22233466777778899999998764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.92  E-value=4.8e-10  Score=85.09  Aligned_cols=92  Identities=20%  Similarity=0.302  Sum_probs=57.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEE-EcCCCCChhHHH-hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~-~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      .-.+|+|||.|++|..+++.|...|+.|.. |+|+..+.+.+. ..+...+.+++++++++|++++++|++.-.  -+.+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~--~va~   86 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIA--EVAE   86 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHH--HHHH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHH--HHHH
Confidence            457899999999999999999999999875 567653333332 233344557889999999999999965332  2334


Q ss_pred             HHHhc--CCCCcEEEEcC
Q 027408          113 DRIAK--MKKGVLIVNNA  128 (223)
Q Consensus       113 ~~~~~--mk~ga~ivn~s  128 (223)
                      ++...  .++|.+++.+|
T Consensus        87 ~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HHHCC--S-TT-EEEES-
T ss_pred             HHHHhccCCCCcEEEECC
Confidence            55444  68999999996

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK07680 late competence protein ComER; Validated

Probab=98.92  E-value=7.1e-09  Score=88.50  Aligned_cols=103  Identities=10%  Similarity=0.250  Sum_probs=74.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC----eEEEEcCCCCChhHH-Hhh-CCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLE-KET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~-~~~-g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      ++|+|||+|.||+.+++.|...|.    +|.+++|++...+.. ..+ ++....+..+++.++|+|++++|.. ....++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HHHHHH
Confidence            479999999999999999987773    799999976332222 223 5665668888899999999999822 233333


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                       ++....++++.+||+++.|  ++.+.|.+.+.
T Consensus        80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence             4555667788999999855  36777766654

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.89  E-value=5.2e-09  Score=89.15  Aligned_cols=95  Identities=20%  Similarity=0.293  Sum_probs=80.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      -+.||.+.|.|+|.+|+..|+.|++||.+|++....+-..-.+.-.|++. ..++|++++.|+++.++-    .+.+|..
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V-~tm~ea~~e~difVTtTG----c~dii~~  285 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEV-TTLEEAIREVDIFVTTTG----CKDIITG  285 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEe-eeHHHhhhcCCEEEEccC----CcchhhH
Confidence            36899999999999999999999999999999988764444444456664 589999999999988876    6778999


Q ss_pred             HHHhcCCCCcEEEEcCCCCc
Q 027408          113 DRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~  132 (223)
                      +.|.+||+++++.|++.-.+
T Consensus       286 ~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  286 EHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHHhCcCCcEEeccccccc
Confidence            99999999999999986553

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.89  E-value=2.7e-08  Score=89.14  Aligned_cols=119  Identities=14%  Similarity=0.166  Sum_probs=81.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----------------hCCe--ecCCHHhhcccCCEEEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----------------TGAK--FEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----------------~g~~--~~~~l~e~l~~aDvVv~   98 (223)
                      ++|+|||+|.||..+|..++. |++|++||+++...+....                .+..  ...+..+++++||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            479999999999999977764 9999999997643332221                1121  22346677899999999


Q ss_pred             cCCCChh----------hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCC
Q 027408           99 NTPLTEK----------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH  164 (223)
Q Consensus        99 ~~p~~~~----------t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~  164 (223)
                      |+|...+          ....+ +...+ +++|.++|+.|.-.+-..+.+.+.+.+..+.      |.+|...+..
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~  147 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGK  147 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCc
Confidence            9995411          11111 33444 7999999999999988888898887664332      3556554433

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.88  E-value=8.9e-09  Score=88.67  Aligned_cols=82  Identities=23%  Similarity=0.351  Sum_probs=68.5

Q ss_pred             cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||+|+|||.| .||+.+|..|...|+.|++|++..              .++.++.++||+|+++++..    .
T Consensus       153 ~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~  214 (301)
T PRK14194        153 TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----R  214 (301)
T ss_pred             hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----h
Confidence            3568999999999996 999999999999999999998753              16889999999999999843    3


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCc
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      .+....   +|+|+++||++...+
T Consensus       215 ~v~~~~---ik~GaiVIDvgin~~  235 (301)
T PRK14194        215 LIDADW---LKPGAVVIDVGINRI  235 (301)
T ss_pred             cccHhh---ccCCcEEEEeccccc
Confidence            444443   899999999986553

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.88  E-value=1.2e-08  Score=88.14  Aligned_cols=142  Identities=15%  Similarity=0.232  Sum_probs=103.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcc-cCCEEEEcCCCChhhhhcccHH
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~-~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      .-.+|||||+|++|+-+|+.+...|..++.+||+. -.+.++++|...++.+.++++ +.|+|++|+.. ..+..++-.-
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilaty  128 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATY  128 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhc
Confidence            45689999999999999999999999999999976 567778889888889999885 59999999862 2222333222


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCC
Q 027408          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT  181 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~  181 (223)
                      =++++|.|++++++..-+....+++.+.|-+.-..-..-..|.  |....+.+..+|=|+. -|-.++
T Consensus       129 pfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfG--Pksvnh~wqglpfVyd-kvRig~  193 (480)
T KOG2380|consen  129 PFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFG--PKSVNHEWQGLPFVYD-KVRIGY  193 (480)
T ss_pred             CchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcC--CCcCCCccccCceEEE-Eeeccc
Confidence            3456889999999999998888999998866533322333333  3334556666664444 454444

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.87  E-value=4.9e-08  Score=90.30  Aligned_cols=116  Identities=21%  Similarity=0.208  Sum_probs=85.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhhC-------------CeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~e~l~~   92 (223)
                      ++|||||+|.||..||..+...|++|++||+++...+..           .+.|             +....++++ +.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            689999999999999999999999999999986433221           1223             345567766 569


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~i-vn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~  157 (223)
                      ||+|+.++|.+.+.+..+..+.-+.+++++++ .|+|.-.+   ..+..++.. .-+..++..|.+
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~P  148 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNP  148 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCC
Confidence            99999999999888888777766677899999 48876554   456666543 223356665553

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.86  E-value=5.3e-09  Score=80.25  Aligned_cols=96  Identities=26%  Similarity=0.375  Sum_probs=71.1

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCC-ChhHHHhhC---C--eecCCHHhhcccCCEEEEcCCCChh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKM-DPQLEKETG---A--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~-~~~~~~~~g---~--~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ++.++++.|+|.|.+|+.++..|...|++ |++++|+.. ..+.++.++   +  ...+++.+.+.++|+|+.++|....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999999999997 999999852 333444442   2  2345666778999999999984433


Q ss_pred             hhhcccHHHHhcCCCCc-EEEEcCCCC
Q 027408          106 TRGMFDKDRIAKMKKGV-LIVNNARGA  131 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga-~ivn~srg~  131 (223)
                         .+.++.++..++.. +++|.+...
T Consensus        89 ---~i~~~~~~~~~~~~~~v~Dla~Pr  112 (135)
T PF01488_consen   89 ---IITEEMLKKASKKLRLVIDLAVPR  112 (135)
T ss_dssp             ---SSTHHHHTTTCHHCSEEEES-SS-
T ss_pred             ---ccCHHHHHHHHhhhhceeccccCC
Confidence               67788887766543 788886544

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.86  E-value=1.4e-08  Score=86.03  Aligned_cols=103  Identities=12%  Similarity=0.257  Sum_probs=73.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCe---EEEEcCCCCChhH-HHhh-CCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQL-EKET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~---V~~~d~~~~~~~~-~~~~-g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ++|||||+|+||+++++.+...|..   +.+++|+....+. ...+ ++....+.+++++++|+|++++|. .....++ 
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   78 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIAEEVL-   78 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            4799999999999999999877753   5788886533322 2333 455667888999999999999992 2333333 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      ++ + .++++.++|+++-  -+..+.|.+.+..+
T Consensus        79 ~~-l-~~~~~~~vis~~a--g~~~~~l~~~~~~~  108 (258)
T PRK06476         79 RA-L-RFRPGQTVISVIA--ATDRAALLEWIGHD  108 (258)
T ss_pred             HH-h-ccCCCCEEEEECC--CCCHHHHHHHhCCC
Confidence            22 2 2568899999873  47778888877654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.83  E-value=2.5e-08  Score=85.51  Aligned_cols=104  Identities=14%  Similarity=0.260  Sum_probs=73.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC----CeEEEEcCCCCC-hh-HHHhh-CCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMD-PQ-LEKET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~-~~-~~~~~-g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      ++|+|||+|.||.++++.+...|    .+|.+|+++... .+ ..... ++....+..++++++|+|++|+|  +....-
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp--p~~~~~   79 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP--PLAVLP   79 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC--HHHHHH
Confidence            47999999999999999998777    679999986421 11 12223 23334678888999999999999  332222


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      +-.+....++++..||++..|  ++.+.|.+.+..
T Consensus        80 vl~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~  112 (277)
T PRK06928         80 LLKDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG  112 (277)
T ss_pred             HHHHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            224444556788899999888  666778777643

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.82  E-value=2.1e-08  Score=79.81  Aligned_cols=82  Identities=28%  Similarity=0.380  Sum_probs=69.8

Q ss_pred             cCCCCCEEEEEcccHH-HHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           32 YDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        32 ~~l~g~~igIiG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      ..|.|++|.|||.|.+ |..+|+.|...|.+|.+++|+.              .++.+.+.++|+||.+++..    +++
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii  101 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLV  101 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----cee
Confidence            4699999999999996 8889999999999999999852              36778899999999999832    267


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccC
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMD  134 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd  134 (223)
                      .++.   ++++.++||++...-+|
T Consensus       102 ~~~~---~~~~~viIDla~prdvd  122 (168)
T cd01080         102 KGDM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             cHHH---ccCCeEEEEccCCCccc
Confidence            7765   57899999999998877

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.82  E-value=3.4e-08  Score=91.22  Aligned_cols=120  Identities=16%  Similarity=0.119  Sum_probs=86.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhhC-------------CeecCCHHhhc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTML   90 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~e~l   90 (223)
                      +=++|||||.|.||..||..+...|++|.+||+++...+..           .+.|             +...+++++ +
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l   82 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-L   82 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence            34679999999999999999999999999999986433211           1112             334567766 4


Q ss_pred             ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv-n~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      .+||+|+.++|.+.+.+..+..+.-+.++++++|. |+|.-.   ...+.+.+.. ..+..++..|.+-|
T Consensus        83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~---i~~iA~~~~~-p~r~~G~HFf~Pap  148 (503)
T TIGR02279        83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS---ITAIAAGLAR-PERVAGLHFFNPAP  148 (503)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC---HHHHHHhcCc-ccceEEEeccCccc
Confidence            69999999999888888877777767788888876 565433   3566666643 33456777655433

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.82  E-value=1.7e-08  Score=85.74  Aligned_cols=101  Identities=16%  Similarity=0.208  Sum_probs=71.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC---CeEEEEcCCCCChhHHHh-hCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~-~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ++|+|||+|.||+.++..+...|   .+|.+++|++...+.... +++....+.++++.++|+|++|+|.. ....+ .+
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v-~~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEV-LS   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHH-HH
Confidence            58999999999999999998878   689999997643333333 46666678888889999999999822 12222 23


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                      +....+  +.+||++..|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            333333  46788887654  5666666654

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.81  E-value=3.4e-08  Score=82.72  Aligned_cols=106  Identities=15%  Similarity=0.240  Sum_probs=72.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCC---Ce-EEEEcCC-CC-ChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFN---CN-LLYHDRV-KM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G---~~-V~~~d~~-~~-~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      ..++|+|||+|+||++++..+...|   .+ +++++++ +. .......+++....+++++++++|+|++++|  +....
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp--~~~~~   80 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMP--PSAHE   80 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecC--HHHHH
Confidence            3578999999999999999987665   33 7778764 22 2233344566666788899999999999999  33222


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      -+-++.-..++ +.+||+++-|  ++.+.|.+.+..+
T Consensus        81 ~v~~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         81 ELLAELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HHHHHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            22233333344 6789999877  4555676666544

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.80  E-value=1.8e-08  Score=91.94  Aligned_cols=112  Identities=11%  Similarity=0.070  Sum_probs=95.1

Q ss_pred             HHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-----CCeecCCHHhhccc---CCEEEEcCCCChhhhhcccHHHHhcC
Q 027408           47 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKDRIAKM  118 (223)
Q Consensus        47 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~e~l~~---aDvVv~~~p~~~~t~~~i~~~~~~~m  118 (223)
                      ||+.+|+.|...|++|.+|||++...+...+.     ++....+++++++.   +|+|++++|..+.+..++ ...+..+
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            79999999999999999999987444444332     46677899999874   899999999998888887 5788999


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408          119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus       119 k~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      .+|.++||.+....-|...+.+.+++..+.+...-|...++
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            99999999999999999999999999999877777777654

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.79  E-value=2.8e-08  Score=84.67  Aligned_cols=107  Identities=21%  Similarity=0.324  Sum_probs=73.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--CCe-EEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--G~~-V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ++|||||+|.||+.+++.+...  +++ +.++|+++... +..+.++...+.++++++.++|+|++|+|.  ....   +
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~--~~~~---~   76 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV--NAVE---E   76 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh--HHHH---H
Confidence            4899999999999999998765  466 55788875322 233445666677999999999999999982  2221   2


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCcc
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~---~al~~~L~~g~i~  148 (223)
                      -....++.|..++..+.|.+.|.   +.|.++.++++..
T Consensus        77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence            22334456667777888877764   3566666665543

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.79  E-value=2e-08  Score=85.18  Aligned_cols=99  Identities=19%  Similarity=0.334  Sum_probs=78.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC----CeEEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ++|||||+|+||++++..+...|    .+|++.+|+.... ....++++...++.+++..++|+|++++.  |..    -
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~----~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQD----L   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHh----H
Confidence            58999999999999999998888    5799999987444 36667877656677889999999999997  432    2


Q ss_pred             HHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH
Q 027408          112 KDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus       112 ~~~~~~mk---~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                      ++.++.++   ++.+||+++.|-  ..+.|.+.|.
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~  108 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAGV--SIETLERLLG  108 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcC
Confidence            55666665   689999998875  5566777765

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.74  E-value=3.4e-08  Score=79.41  Aligned_cols=114  Identities=13%  Similarity=0.163  Sum_probs=78.5

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH------------------------hhCCeecCCHHhhcccC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK------------------------ETGAKFEEDLDTMLPKC   93 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~------------------------~~g~~~~~~l~e~l~~a   93 (223)
                      +|+|||.|.||+.+|..+...|++|..||+++...+...                        ...+...++++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            699999999999999999999999999999763221110                        01234567899888 99


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      |+|+-++|.+.+.+.-+.++.-+.++++++|...+.  -+....|...+. ..-+..++-.|
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS--sl~i~~la~~~~-~p~R~ig~Hf~  138 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTS--SLSISELAAALS-RPERFIGMHFF  138 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S--SS-HHHHHTTSS-TGGGEEEEEE-
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCC--CCCHHHHHhccC-cCceEEEEecc
Confidence            999999998888888787888888999999866544  345566666654 34445565544

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.73  E-value=4.5e-08  Score=83.44  Aligned_cols=90  Identities=22%  Similarity=0.355  Sum_probs=72.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      -|.||+|+|||||+-|.+-|..|+..|.+|++=-|.. .+.+.+.+.|++.. +.+|+.+++|+|.+.+|+..+ ..+..
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~q-~~vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQQ-KEVYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence            4899999999999999999999999999977655544 34567777788755 899999999999999995443 33445


Q ss_pred             HHHHhcCCCCcEE
Q 027408          112 KDRIAKMKKGVLI  124 (223)
Q Consensus       112 ~~~~~~mk~ga~i  124 (223)
                      ++.-..|++|+.+
T Consensus        93 ~~I~p~Lk~G~aL  105 (338)
T COG0059          93 KEIAPNLKEGAAL  105 (338)
T ss_pred             HHhhhhhcCCceE
Confidence            5777889988854

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.72  E-value=5.9e-08  Score=83.07  Aligned_cols=81  Identities=20%  Similarity=0.252  Sum_probs=69.0

Q ss_pred             ccCCCCCEEEEEcccHH-HHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.|+++.|||.|.+ |+.+|..|...|+.|+++...              ..++.+.+++||+|+.+++    +.++
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG----~~~~  214 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVG----KRNV  214 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCC----CcCc
Confidence            56799999999999988 999999999999999987642              1368889999999999999    4567


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      ++.   +.+|+|+++||++...+
T Consensus       215 i~~---~~ik~gavVIDVGin~~  234 (285)
T PRK14189        215 LTA---DMVKPGATVIDVGMNRD  234 (285)
T ss_pred             cCH---HHcCCCCEEEEcccccc
Confidence            776   56899999999997653

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.68  E-value=9.3e-08  Score=82.45  Aligned_cols=80  Identities=26%  Similarity=0.369  Sum_probs=66.3

Q ss_pred             ccCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEc-CCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD-RVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        31 ~~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      +.++.||+|+||| .|.||+.+|.+|...|+.|.+|+ ++.               ++++++++||+|+++++...    
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~----  213 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE----  213 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----
Confidence            4579999999999 99999999999999999999996 432               47888999999999999433    


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCc
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      .+....   +++|+++||++--.+
T Consensus       214 ~v~~~~---lk~GavVIDvGin~~  234 (296)
T PRK14188        214 MVKGDW---IKPGATVIDVGINRI  234 (296)
T ss_pred             hcchhe---ecCCCEEEEcCCccc
Confidence            344333   899999999986553

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.67  E-value=8.9e-07  Score=78.07  Aligned_cols=158  Identities=13%  Similarity=0.156  Sum_probs=119.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhh----CCeecCCHHhhc---ccCCEEEEcCCCChhhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET----GAKFEEDLDTML---PKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~----g~~~~~~l~e~l---~~aDvVv~~~p~~~~t~~  108 (223)
                      ..||+||+|-||+.+|......|++|.+|||+.... +..++.    .+....+++|++   +.---|++.+........
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            469999999999999999999999999999987333 333332    244556788775   456777777764322222


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHH
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  188 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~  188 (223)
                      .| ++++..|.+|-++||-+...--|...-.+.|.+..|.+.+.-|...|--+-..|-       +   +-|-+++++++
T Consensus        84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-------i---MpGG~~eay~~  152 (473)
T COG0362          84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-------I---MPGGQKEAYEL  152 (473)
T ss_pred             HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-------c---CCCCCHHHHHH
Confidence            33 7888999999999999999999999999999999999999999988854322221       1   34678999988


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 027408          189 YAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       189 ~~~~~~~~i~~~~~g~~~  206 (223)
                      +.- +.+.|.+-..|+|.
T Consensus       153 v~p-il~~IaAk~~g~pC  169 (473)
T COG0362         153 VAP-ILTKIAAKVDGEPC  169 (473)
T ss_pred             HHH-HHHHHHhhcCCCCc
Confidence            765 44557777778775

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.63  E-value=1.4e-07  Score=78.04  Aligned_cols=94  Identities=17%  Similarity=0.236  Sum_probs=63.6

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------hCC--e-ecCCHHhhcccCCEEEEcCCCCh
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------TGA--K-FEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------~g~--~-~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ++|+||| .|.||+.++..|...|.+|.+++|++...+....        .++  . ...+..+.++++|+|++++|...
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            5799997 8999999999999999999999987533222111        111  1 12366788899999999999332


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCCcc
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~v  133 (223)
                       ...++ ++....++ +.++|+++.|--.
T Consensus        81 -~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        81 -VLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             -HHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence             22222 33323343 5899999887544

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.62  E-value=5e-07  Score=77.77  Aligned_cols=108  Identities=12%  Similarity=0.140  Sum_probs=74.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-----------ecCCHHhhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------FEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....+...+.|..           ...+.+++ +.+|+|++++|.. .
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence            479999999999999999999999999999865333333333431           13445555 8899999999943 2


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +..+ -+...+.+.+++.||....| +-..+.+.+.+....+.
T Consensus        79 ~~~~-~~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         79 LPAA-LPSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             HHHH-HHHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            3332 24455566777888888776 33455666666555554

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.61  E-value=1.2e-06  Score=72.96  Aligned_cols=154  Identities=16%  Similarity=0.131  Sum_probs=101.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCe---EEEEcCCC----CC--------hhHHHhhCCeec-CCHHhhcccCCE
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVK----MD--------PQLEKETGAKFE-EDLDTMLPKCDI   95 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~---V~~~d~~~----~~--------~~~~~~~g~~~~-~~l~e~l~~aDv   95 (223)
                      ..+.+++|.|+|.|.+|+.+|..|...|+.   |+++||+.    ..        .+.++..+.... .++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            468999999999999999999999988974   99999983    21        112333321111 267788889999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC-ccEEEeeCCCCCCCCCCCCccCCCCeEE
Q 027408           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH-IAGYSGDVWNPQPAPKDHPWRYMPNQAM  174 (223)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~-i~~a~lDv~~~ep~~~~~~l~~~~nv~~  174 (223)
                      |+.++|     .++++++.++.|.++.++...+...  .+.-+.++.+.|. +..-+.     +     ....+..|+++
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~ga~i~a~G~-----~-----~~~~Q~nn~~~  163 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAGADIVATGR-----S-----DFPNQVNNVLG  163 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcCCcEEEeCC-----C-----CCccccceeee
Confidence            999987     5678889999999999999888443  3443444444433 232221     1     12235678999


Q ss_pred             ccCCCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 027408          175 TPHVSGT-----TIDAQLRYAAGVKDMLDRYFK  202 (223)
Q Consensus       175 tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~  202 (223)
                      -|=++-.     ...-.+.|...+.+.|..+..
T Consensus       164 fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~  196 (226)
T cd05311         164 FPGIFRGALDVRATKITEEMKLAAAEAIADLAE  196 (226)
T ss_pred             cchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence            9976632     222234455556666666554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.61  E-value=2.6e-07  Score=81.45  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=73.3

Q ss_pred             HHHHHHHHccCCCeEEEEcCCCC-----ChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCc
Q 027408           48 GKLLLQRLKPFNCNLLYHDRVKM-----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (223)
Q Consensus        48 G~~iA~~l~~~G~~V~~~d~~~~-----~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga  122 (223)
                      |..+|..|...|++|++||+++.     ..+.....|+....+..+++++||+|++++|....+..++ ......+++++
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            78899999888999999999763     1123445677767788899999999999999655456655 56778889999


Q ss_pred             EEEEcCCCCccCH-HHHHHHHH
Q 027408          123 LIVNNARGAIMDT-QAVVDACS  143 (223)
Q Consensus       123 ~ivn~srg~~vd~-~al~~~L~  143 (223)
                      +|||++.+..... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999876655 55556664

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.61  E-value=1.8e-07  Score=80.13  Aligned_cols=81  Identities=23%  Similarity=0.315  Sum_probs=66.7

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||+|+|||. |.+|+.+|..|...|+.|++|....              .++.+.+++||+|+.+++.    .+
T Consensus       152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVI~avg~----~~  213 (284)
T PRK14179        152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------RNLAEVARKADILVVAIGR----GH  213 (284)
T ss_pred             hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEecCc----cc
Confidence            356899999999999 9999999999999999999984321              2688899999999999983    23


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++....   +|+|+++||++-..
T Consensus       214 ~v~~~~---ik~GavVIDvgin~  233 (284)
T PRK14179        214 FVTKEF---VKEGAVVIDVGMNR  233 (284)
T ss_pred             cCCHHH---ccCCcEEEEeccee
Confidence            454443   89999999998655

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.60  E-value=1.2e-07  Score=85.82  Aligned_cols=96  Identities=26%  Similarity=0.407  Sum_probs=71.4

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCC-hhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMD-PQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~-~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.|++|+|+|+|.||+.+++.|...| .+|++++|+... .+.+..++...  ..++.+.+.++|+|+.|++.   +..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence            488999999999999999999999999 679999997633 33445555322  24667788899999999873   345


Q ss_pred             cccHHHHhcCC----CCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMK----KGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk----~ga~ivn~srg~  131 (223)
                      +++.+.++.+.    ...+++|.+...
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Pr  280 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPR  280 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            67777776642    235788887544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.59  E-value=2.2e-07  Score=80.95  Aligned_cols=96  Identities=26%  Similarity=0.334  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCC-ChhHHHhhCCeec--CCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKM-DPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~-~~~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.+++|+|||.|.||+.+++.++..| .+|++++|++. ..+.+.+++....  +++.+.+.++|+|+.++|.... . .
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~-~  253 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-A-K  253 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-H-H
Confidence            78999999999999999999998866 57999999863 3355666665432  3466778899999999984433 1 2


Q ss_pred             ccHHHHhcC-CCCcEEEEcCCCC
Q 027408          110 FDKDRIAKM-KKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~m-k~ga~ivn~srg~  131 (223)
                      +.+..++.. +++.++||++...
T Consensus       254 ~~~~~~~~~~~~~~~viDlavPr  276 (311)
T cd05213         254 IVERAMKKRSGKPRLIVDLAVPR  276 (311)
T ss_pred             HHHHHHhhCCCCCeEEEEeCCCC
Confidence            223333333 3567888887543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.59  E-value=2.5e-07  Score=75.44  Aligned_cols=91  Identities=14%  Similarity=0.212  Sum_probs=65.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhH-HHhhCCe-ecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQL-EKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~-~~~~g~~-~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      ++++|+|.|+||..+|+++.+.|++|++-+++. ++.+. ++.++.. ...+.++..+.+|+|++++|..... . +.++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~-~-v~~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIP-D-VLAE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHH-h-HHHH
Confidence            689999999999999999999999998886654 22222 2222221 2347888999999999999943322 1 2355


Q ss_pred             HHhcCCCCcEEEEcCCC
Q 027408          114 RIAKMKKGVLIVNNARG  130 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg  130 (223)
                      ....++ |.++|+++-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            555555 8999999875

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.59  E-value=2.1e-06  Score=78.87  Aligned_cols=137  Identities=12%  Similarity=0.106  Sum_probs=88.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--CCeEEEEcCCCCChhHHH----------------h-h--CCeecCCHHhhcccCCE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK----------------E-T--GAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~----------------~-~--g~~~~~~l~e~l~~aDv   95 (223)
                      ++|+|||+|.+|..+|..|+..  |++|+++|.++...+...                + .  .....++.++.+++||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            6899999999999999999866  588999998653222111                0 0  13344567788899999


Q ss_pred             EEEcCC--CC---------hhhhhc--ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEee-CCCCCCCC
Q 027408           96 VVVNTP--LT---------EKTRGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPAP  161 (223)
Q Consensus        96 Vv~~~p--~~---------~~t~~~--i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lD-v~~~ep~~  161 (223)
                      +++|+|  ..         ++...+  ..++.-+.++++.+||.-|.-.+=..+.+.+.|.+.. .|.-.. +|.+|-+.
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~  160 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA  160 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence            999986  21         111122  2345667789999999999888877788888877631 111111 14556444


Q ss_pred             CCC---CccCCCCeEE
Q 027408          162 KDH---PWRYMPNQAM  174 (223)
Q Consensus       162 ~~~---~l~~~~nv~~  174 (223)
                      +..   .+...|+|++
T Consensus       161 ~G~a~~d~~~p~riVi  176 (473)
T PLN02353        161 EGTAIEDLFKPDRVLI  176 (473)
T ss_pred             CCCcccccCCCCEEEE
Confidence            433   3444555553

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.58  E-value=2.2e-07  Score=85.49  Aligned_cols=96  Identities=18%  Similarity=0.251  Sum_probs=75.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--CC-------------------------
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED-------------------------   85 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~-------------------------   85 (223)
                      .+.+.++.|+|+|.+|...++.++.+|.+|+++|++....+.++.+|...+  +.                         
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            456789999999999999999999999999999998755566666665431  10                         


Q ss_pred             HHhhcccCCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           86 LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        86 l~e~l~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +.+.++++|+|+.++  |..+ ...++.++.++.||+|++|||++-
T Consensus       241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence            445578899998887  2211 235788999999999999999975

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.58  E-value=4.1e-07  Score=79.79  Aligned_cols=107  Identities=19%  Similarity=0.301  Sum_probs=75.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-----------------ecCCHHhhcccCCEEEEc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------------FEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------------~~~~l~e~l~~aDvVv~~   99 (223)
                      ++|+|||.|.||..+|..|...|++|.+++|++. .+...+.+..                 ...+. +.+..+|+|+++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            5799999999999999999999999999998542 2222333321                 12334 567889999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +|... ...++ ++..+.++++.+|+++..| +...+.+.+.+...++.
T Consensus        81 vk~~~-~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         81 VKSAA-TADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL  126 (341)
T ss_pred             ecCcc-hHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence            98543 33333 5566677889999888654 44556677777665543

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.57  E-value=6.8e-07  Score=78.93  Aligned_cols=157  Identities=18%  Similarity=0.298  Sum_probs=103.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-------------------HhhC-CeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-------------------KETG-AKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-------------------~~~g-~~~~~~l~e~l~~aDvV   96 (223)
                      .+|||||+|-||-.+|..+...|++|+++|.++...+..                   ...| +...++.++ ++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence            799999999999999999999999999999876422211                   1122 334445544 4599999


Q ss_pred             EEcCCCChhhh-------hcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC--CccEEEeeC---CCCCCCCC
Q 027408           97 VVNTPLTEKTR-------GMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDV---WNPQPAPK  162 (223)
Q Consensus        97 v~~~p~~~~t~-------~~i--~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g--~i~~a~lDv---~~~ep~~~  162 (223)
                      ++|+| ||-+.       .+.  .+...+.|++|.++|--|.-..=..+.+...|.+.  .+. ..-|.   |.+|-..+
T Consensus        89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            99998 33222       111  24567889999999999998888888888887664  333 33454   45554444


Q ss_pred             CCCccCCCCeEEccC-CCCCcHHHHHHHHHHHHHHHHHHHcC
Q 027408          163 DHPWRYMPNQAMTPH-VSGTTIDAQLRYAAGVKDMLDRYFKG  203 (223)
Q Consensus       163 ~~~l~~~~nv~~tPH-~a~~t~~~~~~~~~~~~~~i~~~~~g  203 (223)
                      .+.+...-|   .|. +||.|..+.+..    ..-.+.+++|
T Consensus       167 G~~~~el~~---~~kVIgG~tp~~~e~a----~~lY~~iv~~  201 (436)
T COG0677         167 GNVLKELVN---NPKVIGGVTPKCAELA----AALYKTIVEG  201 (436)
T ss_pred             Cchhhhhhc---CCceeecCCHHHHHHH----HHHHHHheEE
Confidence            445443322   343 577887776543    2333445555

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.57  E-value=2.8e-07  Score=79.02  Aligned_cols=80  Identities=24%  Similarity=0.393  Sum_probs=67.6

Q ss_pred             ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.+|.|+++.|||.|. +|+.+|..|...|+.|++++++.              .++.+.+++||+|+.+++.    .++
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~----p~~  214 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGK----PGL  214 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCC----Ccc
Confidence            4579999999999988 99999999999999999988632              2678889999999999982    335


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +.++.   +|+|+++||++-..
T Consensus       215 i~~~~---vk~gavVIDvGi~~  233 (286)
T PRK14175        215 VTKDV---VKEGAVIIDVGNTP  233 (286)
T ss_pred             cCHHH---cCCCcEEEEcCCCc
Confidence            66654   68999999998755

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.56  E-value=7.4e-07  Score=76.86  Aligned_cols=108  Identities=15%  Similarity=0.193  Sum_probs=74.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-------------ecCCHHhhcccCCEEEEcCCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------------~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ++|+|+|.|.||..+|..|...|.+|.+++| ....+...+.+..             ..++.++....+|+|++++|..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            4799999999999999999998999999998 4322322332321             1335566678899999999943


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                       .+..++ ++....++++.+||.+.-| +-..+.+.+.+.+.++.
T Consensus        80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence             222322 4445556778888887665 44466777777665544

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=98.55  E-value=4.9e-07  Score=76.73  Aligned_cols=126  Identities=13%  Similarity=0.071  Sum_probs=77.9

Q ss_pred             HHHHHccCC--CeEEEEcCCCCChhHHHhhCCee-cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 027408           51 LLQRLKPFN--CNLLYHDRVKMDPQLEKETGAKF-EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus        51 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~~-~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      +|+.|+..|  .+|++||+++...+.+.+.|+.. ..+..+.++++|+|++|+|.  ....-+-++....++++++|+++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~--~~~~~~l~~~~~~~~~~~iv~Dv   78 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV--SAIEDVLEEIAPYLKPGAIVTDV   78 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H--HHHHHHHHHHHCGS-TTSEEEE-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH--HHHHHHHHHhhhhcCCCcEEEEe
Confidence            577787777  78999999876666666777642 22225788999999999993  33223346777789999999999


Q ss_pred             CCCCccCHHHHHHHHHhCCccEEE-eeCCCCC---CCCCCCCccCCCCeEEccCCC
Q 027408          128 ARGAIMDTQAVVDACSSGHIAGYS-GDVWNPQ---PAPKDHPWRYMPNQAMTPHVS  179 (223)
Q Consensus       128 srg~~vd~~al~~~L~~g~i~~a~-lDv~~~e---p~~~~~~l~~~~nv~~tPH~a  179 (223)
                      +.-+.--.+++.+.+. ....+.+ -..|.+|   |...+..++...++++||+-.
T Consensus        79 ~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   79 GSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             -S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             CCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            8866544555555555 2233233 3334443   223355788888999999765

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.55  E-value=1.2e-07  Score=76.64  Aligned_cols=109  Identities=14%  Similarity=0.169  Sum_probs=70.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH--------------------hhCCeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------------------ETGAKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~--------------------~~g~~~~~~l~e~l~~aDvV   96 (223)
                      |+|+|||+|.+|..+|..+...|++|+++|.++...+...                    ..++...++.++.++++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            6899999999999999999999999999998753211111                    01234456788889999999


Q ss_pred             EEcCCCChhhhhc--------ccHHHHhcCCCCcEEEEcCCCCccCHHHHH-HHHHhC
Q 027408           97 VVNTPLTEKTRGM--------FDKDRIAKMKKGVLIVNNARGAIMDTQAVV-DACSSG  145 (223)
Q Consensus        97 v~~~p~~~~t~~~--------i~~~~~~~mk~ga~ivn~srg~~vd~~al~-~~L~~g  145 (223)
                      ++|+|......+.        .-+...+.++++.++|.-|.-.+=..+.+. ..|++.
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~  138 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKR  138 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhh
Confidence            9999822111111        134666778999999999998887777544 445543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.54  E-value=6.8e-07  Score=63.09  Aligned_cols=67  Identities=31%  Similarity=0.456  Sum_probs=56.2

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      ..+.+++++|+|.|.+|+.++..+... +.+|.++|+                          |+++.+++.    ...+
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~----~~~~   68 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPA----GVPV   68 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCC----CCCc
Confidence            358899999999999999999999988 568999987                          999999983    3345


Q ss_pred             cHHHHhcCCCCcEEEEcC
Q 027408          111 DKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~s  128 (223)
                      .++....++++.++++++
T Consensus        69 ~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          69 LEEATAKINEGAVVIDLA   86 (86)
T ss_pred             hHHHHHhcCCCCEEEecC
Confidence            555688899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.53  E-value=2.3e-07  Score=84.16  Aligned_cols=96  Identities=25%  Similarity=0.402  Sum_probs=69.8

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.|++|+|+|.|.||+.+++.+...|. +|++++|++.. ...+..++...  ..++.+.+.++|+|+.|+|..   ..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence            4789999999999999999999999998 79999997633 33555555332  245667788999999998733   34


Q ss_pred             cccHHHHhcC-----CCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKM-----KKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~m-----k~ga~ivn~srg~  131 (223)
                      ++..+.++.+     +.+.+++|++-..
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~Pr  283 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAVPR  283 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence            5666666543     2456778876433

>PLN00203 glutamyl-tRNA reductase

Probab=98.53  E-value=2.3e-07  Score=85.87  Aligned_cols=96  Identities=21%  Similarity=0.340  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-hHHHhh-CC----eecCCHHhhcccCCEEEEcCCCChh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKET-GA----KFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~~~~~-g~----~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .+.+++|+|||.|.||+.+++.|...|. +|++++|+.... ..+..+ +.    ...+++.+.+.++|+|+.++|   .
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence            4889999999999999999999999997 699999986333 333333 22    123466778899999999987   3


Q ss_pred             hhhcccHHHHhcCCC-------CcEEEEcCCCC
Q 027408          106 TRGMFDKDRIAKMKK-------GVLIVNNARGA  131 (223)
Q Consensus       106 t~~~i~~~~~~~mk~-------ga~ivn~srg~  131 (223)
                      ...++.++.++.+++       ..++||++-..
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            455788888887643       24788887654

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.52  E-value=3.3e-07  Score=79.56  Aligned_cols=99  Identities=20%  Similarity=0.217  Sum_probs=70.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------hCCeecCCHHhhcccCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ++|+|+|.|.+|.++|+.+...|.+|..|.|++...+....              .++...++++++++.||+|++.+|.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            68999999999999999999999999999986421111110              1234457899999999999999992


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHH
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA  137 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~a  137 (223)
                        +...-+-++....+++++.+|+++.|=-.+.-.
T Consensus        82 --~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~  114 (329)
T COG0240          82 --QALREVLRQLKPLLLKDAIIVSATKGLEPETGR  114 (329)
T ss_pred             --HHHHHHHHHHhhhccCCCeEEEEeccccCCCcc
Confidence              111112233334567899999999876554333

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.52  E-value=4.6e-07  Score=76.92  Aligned_cols=98  Identities=20%  Similarity=0.343  Sum_probs=65.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCC----CeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      +.++|+|||+|+||.++++.+...+    .++++++++...      .+.....+..+++.++|+|++|+|  |....-+
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~D~Vilavk--p~~~~~v   73 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN------TPFVYLQSNEELAKTCDIIVLAVK--PDLAGKV   73 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc------CCeEEeCChHHHHHhCCEEEEEeC--HHHHHHH
Confidence            3478999999999999999998665    248899886522      233445577788889999999998  3332222


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                      -.+....+++ ..+|++..|-  +.+.+.+.+.
T Consensus        74 l~~i~~~l~~-~~iIS~~aGi--~~~~l~~~~~  103 (260)
T PTZ00431         74 LLEIKPYLGS-KLLISICGGL--NLKTLEEMVG  103 (260)
T ss_pred             HHHHHhhccC-CEEEEEeCCc--cHHHHHHHcC
Confidence            2344444554 4566665554  3555555553

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.51  E-value=2.5e-07  Score=73.45  Aligned_cols=98  Identities=19%  Similarity=0.269  Sum_probs=68.7

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe---e-----------------------cCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK---F-----------------------EED   85 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~---~-----------------------~~~   85 (223)
                      ..+...+|.|+|.|++|+..++.++++|++|..+|......+..+..+..   .                       ...
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            35778999999999999999999999999999999865322222222221   1                       124


Q ss_pred             HHhhcccCCEEEEcCC-CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           86 LDTMLPKCDIVVVNTP-LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        86 l~e~l~~aDvVv~~~p-~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +.+.++.+|+|+.++- .......++.++.++.||++.+|+|+|-
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence            6677889999986432 3455667899999999999999999963

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.46  E-value=8.7e-07  Score=78.75  Aligned_cols=99  Identities=12%  Similarity=0.149  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCC-------CeEEEEcCCCCC-----hhHHHh--------------hCCeecCCHH
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKMD-----PQLEKE--------------TGAKFEEDLD   87 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~~-----~~~~~~--------------~g~~~~~~l~   87 (223)
                      ..-++|+|||.|.+|.++|..+...|       .+|..|.+++..     .+....              .++...++++
T Consensus         9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~   88 (365)
T PTZ00345          9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK   88 (365)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence            34579999999999999999998665       789999886531     111111              1233457888


Q ss_pred             hhcccCCEEEEcCCCChhhhhcccHHHHh--cCCCCcEEEEcCCCCccC
Q 027408           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIA--KMKKGVLIVNNARGAIMD  134 (223)
Q Consensus        88 e~l~~aDvVv~~~p~~~~t~~~i~~~~~~--~mk~ga~ivn~srg~~vd  134 (223)
                      ++++++|+|++++|  ++...-+-++.-.  .+++++++|+++.|=-.+
T Consensus        89 eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         89 EAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             HHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccC
Confidence            99999999999999  3332222233333  456677999998875443

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.46  E-value=5.9e-07  Score=79.18  Aligned_cols=95  Identities=16%  Similarity=0.107  Sum_probs=67.5

Q ss_pred             EEEEEcccHHHHHHHHHHccCC--------CeEEEEcCCCC--ChhHHHh-----------------hCCeecCCHHhhc
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKM--DPQLEKE-----------------TGAKFEEDLDTML   90 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G--------~~V~~~d~~~~--~~~~~~~-----------------~g~~~~~~l~e~l   90 (223)
                      +|+|||.|++|.++|..+...|        .+|..|.+...  ..+..+.                 .++...+++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998777        89999987320  1111110                 0123446899999


Q ss_pred             ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccC
Q 027408           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD  134 (223)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd  134 (223)
                      ++||+|++++|  +....-+-.+.-..++++..+|+++.|=-.+
T Consensus        81 ~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        81 KGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             hcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence            99999999999  3222223355556778899999999885443

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=98.43  E-value=4.7e-07  Score=79.21  Aligned_cols=136  Identities=17%  Similarity=0.233  Sum_probs=91.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-C-----CHHhhcccCCEEEEcCCCChhhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-E-----DLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~-----~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .|++|+|+|+|..|....+.++++|++|+++|++..+.+.++++|...+ .     ..+++-+.+|+|+.+++ ....  
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~--  242 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL--  242 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH--
Confidence            4999999999999999999999999999999999888888889887532 1     12222233999999998 3322  


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCC-CCccCCCCeEEccCCCCCcHHHHH
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD-HPWRYMPNQAMTPHVSGTTIDAQL  187 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~-~~l~~~~nv~~tPH~a~~t~~~~~  187 (223)
                         ...++.++++..++-++-..                         .+|.+.. ....-+.++-+..++.+.-.|.++
T Consensus       243 ---~~~l~~l~~~G~~v~vG~~~-------------------------~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e  294 (339)
T COG1064         243 ---EPSLKALRRGGTLVLVGLPG-------------------------GGPIPLLPAFLLILKEISIVGSLVGTRADLEE  294 (339)
T ss_pred             ---HHHHHHHhcCCEEEEECCCC-------------------------CcccCCCCHHHhhhcCeEEEEEecCCHHHHHH
Confidence               56778888888887774321                         0111111 112334566667766766666666


Q ss_pred             HHHHHHHHHHHHHH
Q 027408          188 RYAAGVKDMLDRYF  201 (223)
Q Consensus       188 ~~~~~~~~~i~~~~  201 (223)
                      .+.......|+..+
T Consensus       295 ~l~f~~~g~Ikp~i  308 (339)
T COG1064         295 ALDFAAEGKIKPEI  308 (339)
T ss_pred             HHHHHHhCCceeeE
Confidence            55444444444444

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.42  E-value=5e-07  Score=77.75  Aligned_cols=143  Identities=14%  Similarity=0.146  Sum_probs=95.9

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhhCCeec-CC------HHhhcccCCEEEEcCCCChhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFE-ED------LDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~-~~------l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      .|+.+||+|+|.+|..-.+.++++|++|+++|++. +.++..+.+|.+.+ .+      .+++...-|.++-+++.- . 
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~-a-  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL-A-  258 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec-c-
Confidence            89999999999999999999999999999999986 55556666887532 22      224445567777666522 1 


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~  186 (223)
                      .+.+ +..++.||++..+|-++-.+                          .|...+-..+.+..+.+.-.+-|+..|.+
T Consensus       259 ~~~~-~~~~~~lk~~Gt~V~vg~p~--------------------------~~~~~~~~~lil~~~~I~GS~vG~~ket~  311 (360)
T KOG0023|consen  259 EHAL-EPLLGLLKVNGTLVLVGLPE--------------------------KPLKLDTFPLILGRKSIKGSIVGSRKETQ  311 (360)
T ss_pred             ccch-HHHHHHhhcCCEEEEEeCcC--------------------------CcccccchhhhcccEEEEeeccccHHHHH
Confidence            2222 67788888888887775322                          13333333344556666666667778887


Q ss_pred             HHHHHHHHHHHHHHHcCCCC
Q 027408          187 LRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       187 ~~~~~~~~~~i~~~~~g~~~  206 (223)
                      +.+......+|..+++--++
T Consensus       312 E~Ldf~a~~~ik~~IE~v~~  331 (360)
T KOG0023|consen  312 EALDFVARGLIKSPIELVKL  331 (360)
T ss_pred             HHHHHHHcCCCcCceEEEeh
Confidence            77666555666555554444

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.42  E-value=1e-06  Score=72.37  Aligned_cols=98  Identities=27%  Similarity=0.418  Sum_probs=70.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--CCe-EEEEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--G~~-V~~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ++|||||||.||+.+.+.++.-  +++ +.+||++... .+.....+....++++|++++.|+|+-|..  ++   .+-+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS--~~---Av~e   75 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS--PE---AVRE   75 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC--HH---HHHH
Confidence            4799999999999999999753  455 7899997632 233444455455899999999999999987  22   2223


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHH
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDTQAVV  139 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~~al~  139 (223)
                      -..+.++.|.-+|-+|-|.+.|+.-+.
T Consensus        76 ~~~~~L~~g~d~iV~SVGALad~~l~e  102 (255)
T COG1712          76 YVPKILKAGIDVIVMSVGALADEGLRE  102 (255)
T ss_pred             HhHHHHhcCCCEEEEechhccChHHHH
Confidence            344556777777778888888765543

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.41  E-value=1.9e-06  Score=73.79  Aligned_cols=80  Identities=19%  Similarity=0.325  Sum_probs=66.2

Q ss_pred             ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.||++.|||.|. +|+.+|..|...|+.|+++....              .++++.+++||+|+.+++-    .++
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~----p~~  215 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGK----PGF  215 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCC----ccc
Confidence            4689999999999998 99999999999999999987632              3688999999999999951    134


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +..   +.+|+|+++||++-..
T Consensus       216 v~~---~~vk~gavVIDvGin~  234 (285)
T PRK10792        216 IPG---EWIKPGAIVIDVGINR  234 (285)
T ss_pred             ccH---HHcCCCcEEEEccccc
Confidence            554   5578999999998544

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.40  E-value=1e-06  Score=81.24  Aligned_cols=97  Identities=18%  Similarity=0.232  Sum_probs=74.7

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--CC-------------------------
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED-------------------------   85 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~-------------------------   85 (223)
                      ...+.+|.|+|.|.+|...++.++.+|.+|+++|+++...+.++++|....  +.                         
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            357999999999999999999999999999999998766777778887532  11                         


Q ss_pred             HHhhcccCCEEEEcCCCCh-hhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           86 LDTMLPKCDIVVVNTPLTE-KTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        86 l~e~l~~aDvVv~~~p~~~-~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +.+.++++|+|+.|+.... ....++.++.++.||+|..|++++-
T Consensus       242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0112357999998875311 1223456899999999999999974

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.38  E-value=2.1e-06  Score=74.94  Aligned_cols=90  Identities=21%  Similarity=0.231  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHcc-CC-CeEEEEcCCCCChh-HHHhh---C--CeecCCHHhhcccCCEEEEcCCCChh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQ-LEKET---G--AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~-~~~~~---g--~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ...++|+|||+|.+|+.+++.+.. ++ .+|.+|+|++...+ .++++   +  +..+.+.++++++||+|+.++|..  
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--  200 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--  200 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence            467899999999999999986643 45 57999999864333 33332   3  445678999999999998888744  


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       ..++..   +.+++|+++.-++.
T Consensus       201 -~pvl~~---~~l~~g~~i~~ig~  220 (314)
T PRK06141        201 -EPLVRG---EWLKPGTHLDLVGN  220 (314)
T ss_pred             -CCEecH---HHcCCCCEEEeeCC
Confidence             445554   45689996555543

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.37  E-value=9.9e-07  Score=79.04  Aligned_cols=98  Identities=26%  Similarity=0.386  Sum_probs=73.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC-CChhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK-MDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~-~~~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .|.++++.|||+|.||..+|+.|...|. +|++.+|+. +..+++++++..+  ++++.+.+.++|+|+.++.   ....
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence            4899999999999999999999999995 699999986 4455677888543  4566778899999999975   2345


Q ss_pred             cccHHHHhcC-C--CCcEEEEcCCCCcc
Q 027408          109 MFDKDRIAKM-K--KGVLIVNNARGAIM  133 (223)
Q Consensus       109 ~i~~~~~~~m-k--~ga~ivn~srg~~v  133 (223)
                      ++..+.+... +  +.-++||.+-+.-+
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavPRdi  279 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVPRDV  279 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCCCCC
Confidence            6666555443 1  22578888765533

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.37  E-value=1.5e-06  Score=76.14  Aligned_cols=91  Identities=21%  Similarity=0.265  Sum_probs=67.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-C-CCeEEEEcCCCCChhHH-H---hhC--CeecCCHHhhcccCCEEEEcCCCChhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-F-NCNLLYHDRVKMDPQLE-K---ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~-~---~~g--~~~~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      .-+++||||+|.+|+..++.+.. + ..+|.+|||+....+.+ .   +++  +..+.+.++++++||+|++|+|..   
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---  203 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---  203 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---
Confidence            46889999999999998877753 2 34699999986433322 2   335  345689999999999999999843   


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ..++..+   .+|+|+.|..++...
T Consensus       204 ~P~~~~~---~l~~g~~v~~vGs~~  225 (325)
T TIGR02371       204 KPVVKAD---WVSEGTHINAIGADA  225 (325)
T ss_pred             CcEecHH---HcCCCCEEEecCCCC
Confidence            4556554   459999999998543

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.36  E-value=2.6e-07  Score=76.17  Aligned_cols=110  Identities=11%  Similarity=0.132  Sum_probs=72.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHH--ccCCCeEE-EEcCCCCChh-HHHhhCCeecCCHHhhccc--CCEEEEcCCCChhhh-
Q 027408           35 EGKTVGTVGCGRIGKLLLQRL--KPFNCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKTR-  107 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l--~~~G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~e~l~~--aDvVv~~~p~~~~t~-  107 (223)
                      ...+|+|||+|.+|+.+++.+  ...|+++. ++|+++.... ......+...+++++++++  .|.|++|+|...... 
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i  162 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV  162 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence            456899999999999999863  45688866 6776542111 1111112233567787754  999999999655421 


Q ss_pred             --hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          108 --GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       108 --~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                        .+.......-+....+.+|+.+|.+|+.++|..+|..
T Consensus       163 ~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~  201 (213)
T PRK05472        163 ADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT  201 (213)
T ss_pred             HHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence              1111112233445678889999999999999998865

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.35  E-value=5.7e-06  Score=79.71  Aligned_cols=115  Identities=13%  Similarity=0.141  Sum_probs=84.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------h-------------hCCeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~e~l~~   92 (223)
                      ++|+|||.|.||..||..+...|++|..||+++...+...           +             ..+...++++ .+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence            5899999999999999999999999999999763322100           0             0133345664 4689


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ||+|+-++|.+.+.+.-+..+.-+.++++++|.+.+.  -+....|.+.+. ..-+..++--|
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~-~p~r~~g~Hff  452 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTS--TISISLLAKALK-RPENFCGMHFF  452 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcC-CCccEEEEecC
Confidence            9999999999888888888888899999999855443  355666777764 33445566644

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.35  E-value=2.1e-06  Score=73.57  Aligned_cols=72  Identities=22%  Similarity=0.365  Sum_probs=53.5

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCCh-hHHHhhCC----eecCCHHhhcccCCEEEEcCCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKETGA----KFEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~-~~~~~~g~----~~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ..+.++++.|+|.|.+|++++..|...| .+|.+++|+.... +.++.++.    ....+..+.+.++|+||.++|..
T Consensus       119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g  196 (278)
T PRK00258        119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG  196 (278)
T ss_pred             CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence            4688999999999999999999999999 6899999975322 23333221    11113456778899999999954

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.35  E-value=6.5e-06  Score=71.30  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=84.2

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------hhC-------------CeecCCHHhhcc
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ETG-------------AKFEEDLDTMLP   91 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~e~l~   91 (223)
                      -++|||||.|.||+.+|..+..-|++|..+|+++...+...           +.|             +....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            47899999999999999999887799999999843211100           001             12223333 678


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      +||+|+-++|-+.+.+.-+.++.-...+++++|-.-++  -+.-.++.+++ +..-++.++--|.
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTS--sl~it~ia~~~-~rper~iG~HFfN  143 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTS--SLSITELAEAL-KRPERFIGLHFFN  143 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccC--CCCHHHHHHHh-CCchhEEEEeccC
Confidence            99999999999888888888888888999999843333  35567778877 4454566766554

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.34  E-value=1.7e-06  Score=76.34  Aligned_cols=94  Identities=17%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh---------------CCeecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---------------GAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~---------------g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ++|+|||.|.+|..+|..|...| .+..|.+++...+...+.               ++...+++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            68999999999999999999888 677777654222111110               12234677888899999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCCcc
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v  133 (223)
                      . ..+.. +-++....++++..+|++..|=-.
T Consensus        87 s-~~~~~-vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         87 S-HGFRG-VLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             H-HHHHH-HHHHHHhhcCCCCEEEEEEeCCcC
Confidence            2 22222 234555667888889999886433

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.33  E-value=2.2e-06  Score=74.91  Aligned_cols=93  Identities=14%  Similarity=0.242  Sum_probs=63.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------h-------CCeecCCHHhhc-ccCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------T-------GAKFEEDLDTML-PKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------~-------g~~~~~~l~e~l-~~aDvVv~~~p  101 (223)
                      ++|+|||.|.||..+|..|...|.+|.+|+|++...+...+       .       ++....++++.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            47999999999999999999999999999986422111111       0       122335666766 58999999999


Q ss_pred             CChhhhhcccHHHHh-cCCCCcEEEEcCCCC
Q 027408          102 LTEKTRGMFDKDRIA-KMKKGVLIVNNARGA  131 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~-~mk~ga~ivn~srg~  131 (223)
                      .. .+..++ ++... .++++..++....|-
T Consensus        81 s~-~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 TQ-QLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             HH-HHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            32 222222 34444 667777777777664

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.33  E-value=1.6e-06  Score=78.34  Aligned_cols=94  Identities=15%  Similarity=0.320  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC-ChhHHHhhC-Ce--ecCCHHhhcccCCEEEEcCCCChhhh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM-DPQLEKETG-AK--FEEDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~-~~~~~~~~g-~~--~~~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .+.|++|.|||.|.||+.+++.|...|. +|++++|+.. ...++..++ ..  .++++.+.+.++|+|+.|++..   .
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence            5889999999999999999999999996 6999999853 334445544 32  2356677889999999999732   3


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      .++..+...  .+..++||.+-..
T Consensus       255 ~vi~~~~~~--~~~~~~iDLavPR  276 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDISIPQ  276 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeCCCC
Confidence            456655542  2335667776543

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.33  E-value=2.2e-06  Score=67.62  Aligned_cols=81  Identities=23%  Similarity=0.320  Sum_probs=57.8

Q ss_pred             ccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.||++.|||-+ .+|+.++..|...|+.|..++...              .++++.+++||+|+.++.    ..++
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G----~~~~   92 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVG----KPNL   92 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SS----STT-
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeec----cccc
Confidence            457999999999997 599999999999999999888642              378888999999999997    2344


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      +..   ..+|+|+++||++.-..
T Consensus        93 i~~---~~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   93 IKA---DWIKPGAVVIDVGINYV  112 (160)
T ss_dssp             B-G---GGS-TTEEEEE--CEEE
T ss_pred             ccc---ccccCCcEEEecCCccc
Confidence            543   35799999999987654

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.33  E-value=3e-06  Score=72.82  Aligned_cols=80  Identities=23%  Similarity=0.343  Sum_probs=65.3

Q ss_pred             ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.|+++.|+|.|. +|+.+|..|...|+.|+++++..              .++.+.++++|+|+.+++ .+   ..
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG-~~---~~  215 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVG-KP---EL  215 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccC-CC---Cc
Confidence            4679999999999998 99999999999999999998721              256677789999999996 22   25


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +..+.   +++|++++|++-..
T Consensus       216 v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        216 IKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             CCHHH---cCCCCEEEEEEEee
Confidence            66544   79999999997544

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.32  E-value=2.1e-06  Score=73.58  Aligned_cols=80  Identities=21%  Similarity=0.315  Sum_probs=66.7

Q ss_pred             ccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.||+|.|||-| .+|+.+|..|...|+.|.++....              .++.+.+++||+|+.+++    ..++
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG----~p~~  213 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVG----KPDL  213 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecC----CCCc
Confidence            568999999999999 999999999999999999886422              246788999999999997    3456


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +..+.+   |+|+++||++...
T Consensus       214 i~~~~v---k~GavVIDvGi~~  232 (285)
T PRK14191        214 IKASMV---KKGAVVVDIGINR  232 (285)
T ss_pred             CCHHHc---CCCcEEEEeeccc
Confidence            666654   8999999998655

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.32  E-value=1.6e-05  Score=69.47  Aligned_cols=158  Identities=13%  Similarity=0.169  Sum_probs=118.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-H-HHhh---CCeecCCHHhhc---ccCCEEEEcCCCChhhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-L-EKET---GAKFEEDLDTML---PKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~-~~~~---g~~~~~~l~e~l---~~aDvVv~~~p~~~~t~~  108 (223)
                      ..||+||++-||+.++......|+.|.+|+|+....+ . +.+.   .+....++++++   +.-.+|++.+........
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            4699999999999999999999999999999863332 2 1111   233456888886   456778887765555444


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHH
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR  188 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~  188 (223)
                      +| +++..+|.+|-+||+-+...--|...-.+.|.+..|.+.+.-|...|.-+...|-+          +-|.+.+++.+
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl----------MpGg~~~Awp~  155 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL----------MPGGSKEAWPH  155 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc----------CCCCChHHHHH
Confidence            44 78889999999999999999999999999999999999999999888544333321          34677899988


Q ss_pred             HHHHHHHHHHHHH-cCCCC
Q 027408          189 YAAGVKDMLDRYF-KGEDF  206 (223)
Q Consensus       189 ~~~~~~~~i~~~~-~g~~~  206 (223)
                      +...+.. |..-. .|+|.
T Consensus       156 ik~ifq~-iaakv~~~epC  173 (487)
T KOG2653|consen  156 IKDIFQK-IAAKVSDGEPC  173 (487)
T ss_pred             HHHHHHH-HHHHhcCCCCC
Confidence            7765544 44443 55554

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.32  E-value=8.4e-06  Score=62.93  Aligned_cols=80  Identities=25%  Similarity=0.332  Sum_probs=66.3

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.|++|.|+|- ..+|+.+|..|...|+.|..++.+.              .++++.+++||+|+.+++..    ++
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~   84 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EK   84 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----Cc
Confidence            45799999999996 6789999999999999999998642              26788899999999999843    45


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++.+.   +|+|++++|++...
T Consensus        85 i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          85 VPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             cCHHH---cCCCCEEEEcCCCc
Confidence            66554   78999999998655

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.29  E-value=2.7e-06  Score=68.91  Aligned_cols=98  Identities=15%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhh----CC--ee--c---CCHHhhcccCCEEEE
Q 027408           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKET----GA--KF--E---EDLDTMLPKCDIVVV   98 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~----g~--~~--~---~~l~e~l~~aDvVv~   98 (223)
                      ..+.++++.|+|. |.+|+.+++.+...|.+|.+++|+....+ .....    +.  ..  .   +++.+.++++|+|+.
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            4688999999995 99999999999988999999998752211 11111    11  11  1   233467889999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc
Q 027408           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v  133 (223)
                      ++|....+  .  ...-...+++.+++|+.+...+
T Consensus       104 at~~g~~~--~--~~~~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078         104 AGAAGVEL--L--EKLAWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             CCCCCcee--c--hhhhcccCceeEEEEccCCCCC
Confidence            98844431  1  1111234457788888776644

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.29  E-value=3.1e-06  Score=72.52  Aligned_cols=80  Identities=26%  Similarity=0.354  Sum_probs=65.8

Q ss_pred             cccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.|+++.|||.|. +|+.+|..|...|+.|.+++...              .++.+.+++||+|+.++.    ..+
T Consensus       158 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG----~p~  219 (287)
T PRK14176        158 YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATG----VKH  219 (287)
T ss_pred             cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccC----Ccc
Confidence            35679999999999998 99999999999999999988532              367888999999999876    124


Q ss_pred             cccHHHHhcCCCCcEEEEcCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      ++..+   .+|+|+++||++..
T Consensus       220 ~i~~~---~vk~gavVIDvGin  238 (287)
T PRK14176        220 LIKAD---MVKEGAVIFDVGIT  238 (287)
T ss_pred             ccCHH---HcCCCcEEEEeccc
Confidence            56555   57899999999864

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.29  E-value=5.1e-06  Score=70.33  Aligned_cols=102  Identities=16%  Similarity=0.202  Sum_probs=68.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccC---CCeE-EEEcCCCCChhHHHhhCCeecCCHHhh-cccCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF---NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~---G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~e~-l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ++|||||||.||+.+++.+..-   ++++ .++++.+...+.... .+..+.+++++ ....|+|+-|.+     ...+-
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~-----~~av~   76 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAG-----QQAIA   76 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCC-----HHHHH
Confidence            6899999999999999998653   3554 456665422221211 25567889997 478999999998     22333


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHh
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDT---QAVVDACSS  144 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~---~al~~~L~~  144 (223)
                      +-..+.++.|.-++-.|-|.+-|.   +.|.++.++
T Consensus        77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            333444567788888888998873   445554444

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.29  E-value=9.6e-06  Score=77.96  Aligned_cols=115  Identities=14%  Similarity=0.039  Sum_probs=83.5

Q ss_pred             CEEEEEcccHHHHHHHHHHc-cCCCeEEEEcCCCCChhHHH-----------h-------------hCCeecCCHHhhcc
Q 027408           37 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLP   91 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~e~l~   91 (223)
                      ++|+|||.|.||..+|..+. ..|++|..||+++...+...           +             ..+...++++ .++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence            58999999999999999887 57999999999753211100           0             1233445664 578


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      +||+|+-++|.+.+.+.-+..+.-+.++++++|...+.  -+....|.+.+. ..-+..++.-|
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS--~l~i~~la~~~~-~p~r~~g~Hff  444 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTS--SLPIGQIAAAAS-RPENVIGLHYF  444 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCC--CCCHHHHHHhcC-CcccEEEEecC
Confidence            99999999999888888888888889999998854443  345566777764 33345666644

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.28  E-value=2.6e-06  Score=72.82  Aligned_cols=80  Identities=20%  Similarity=0.314  Sum_probs=67.8

Q ss_pred             ccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.|+++.|+|.+ ..|+.+|..+...|+.|..+..+.              .++.+.+++||+|+.+++.    .++
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk----~~l  208 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGK----AGF  208 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCc----ccc
Confidence            468999999999998 999999999999999999887532              3688899999999999972    256


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +.++.+   |+|+++||++-..
T Consensus       209 v~~~~v---k~GavVIDVgi~~  227 (279)
T PRK14178        209 ITPDMV---KPGATVIDVGINQ  227 (279)
T ss_pred             cCHHHc---CCCcEEEEeeccc
Confidence            777774   9999999998654

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.27  E-value=4e-06  Score=73.46  Aligned_cols=88  Identities=26%  Similarity=0.287  Sum_probs=62.5

Q ss_pred             EEEEcccHHHHHHHHHHcc-CCCeEEEEcC-CCCCh-hHHHhhCC------------------eecCCHHhhcccCCEEE
Q 027408           39 VGTVGCGRIGKLLLQRLKP-FNCNLLYHDR-VKMDP-QLEKETGA------------------KFEEDLDTMLPKCDIVV   97 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~-~G~~V~~~d~-~~~~~-~~~~~~g~------------------~~~~~l~e~l~~aDvVv   97 (223)
                      |||+|||+||+.+++.+.. -++++.+++. .+... ..+..+++                  ....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999999864 4688765543 22111 22332332                  12346899999999999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        98 ~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .|+|   .+.+..+.+.+..++.+++|+..-.
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~  109 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK  109 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence            9987   4566788899999998888876543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.27  E-value=1e-05  Score=77.96  Aligned_cols=116  Identities=9%  Similarity=0.005  Sum_probs=85.0

Q ss_pred             CCEEEEEcccHHHHHHHHHHc-cCCCeEEEEcCCCCChhHHH-----------h-------------hCCeecCCHHhhc
Q 027408           36 GKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTML   90 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~e~l   90 (223)
                      =++|+|||.|.||..+|..+. ..|++|..+|+++...+...           +             ..+...+++ +.+
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~  387 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGF  387 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence            368999999999999999988 77999999998753221110           0             013334566 457


Q ss_pred             ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ++||+|+-++|.+.+.+.-+..+.-+.++++++|.+.+.  -++...|.+.+.. .-+.+++.-|
T Consensus       388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS--~l~i~~la~~~~~-p~r~ig~Hff  449 (708)
T PRK11154        388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTS--SLPIGQIAAAAAR-PEQVIGLHYF  449 (708)
T ss_pred             ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHHhcCc-ccceEEEecC
Confidence            899999999999888888888888899999999965444  4566667777643 3345666655

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.27  E-value=1.1e-05  Score=77.60  Aligned_cols=115  Identities=13%  Similarity=0.128  Sum_probs=83.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------h-------------hCCeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~e~l~~   92 (223)
                      ++|+|||.|.||..||..+...|++|..+|+++...+...           +             ..+....+++ .+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence            5899999999999999999999999999998763222110           0             1233345554 4689


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ||+|+-++|.+.+.+.-+..+.-+.++++++|...+.  -++...|...++. .-+..++--|
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS--~l~i~~ia~~~~~-p~r~ig~Hff  452 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTS--TISISLLAKALKR-PENFCGMHFF  452 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHhhcCC-cccEEEEecC
Confidence            9999999998888888888888899999999854443  4556667776643 3344555544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.27  E-value=9.1e-06  Score=69.28  Aligned_cols=107  Identities=17%  Similarity=0.219  Sum_probs=67.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhh--CCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~--g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ++|||||+|.||+.+++.+... ++++. ++++...........  ++..+++++++-.+.|+|+.|+|...     .-+
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~-----~~e   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAA-----LKE   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHH-----HHH
Confidence            4899999999999999999765 56643 444432222222222  45566788888456999999999322     123


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCcc
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~---~al~~~L~~g~i~  148 (223)
                      -....++.|..++..+-+.+.|.   +.|.++.+++...
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            34445566777776666655554   3455665555443

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.26  E-value=2.9e-06  Score=73.75  Aligned_cols=92  Identities=14%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCCh-hHHHhh---CCee-cCCHHhhcccCCEEEEcCCCChhh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDP-QLEKET---GAKF-EEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~-~~~~~~---g~~~-~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      ...++++|||+|.+|+..++.+.. ++. +|.+|+|++... ..+.++   ++.. +.+.++++.++|+|+.++|..   
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---  199 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---  199 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence            467899999999999999999864 665 599999986332 233333   2222 468899999999999999944   


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      ..++..    .+|||+.|..++.-..
T Consensus       200 ~Pl~~~----~~~~g~hi~~iGs~~p  221 (304)
T PRK07340        200 TPVYPE----AARAGRLVVAVGAFTP  221 (304)
T ss_pred             CceeCc----cCCCCCEEEecCCCCC
Confidence            355643    3699999999986443

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.26  E-value=8.3e-06  Score=78.76  Aligned_cols=116  Identities=13%  Similarity=0.092  Sum_probs=85.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------h-------------hCCeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~e~l~~   92 (223)
                      ++|+|||.|.||..||..+...|++|..+|+++...+...           +             ..+...++++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5899999999999999999999999999998763221100           0             1233345665 4689


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      ||+|+-++|.+.+.+.-+..+.-+.++++++|...+  +-++...|.+.+.. .-+..++.-|.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~ig~Hff~  475 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNT--SALPIKDIAAVSSR-PEKVIGMHYFS  475 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-ccceEEEeccC
Confidence            999999999988888888888889999999885433  34566777777644 34456777553

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.26  E-value=3.6e-05  Score=67.00  Aligned_cols=110  Identities=16%  Similarity=0.189  Sum_probs=74.5

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe--------------ecCCHHhhcccCCEEEEcCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .++|+|||.|.||..+|..|...|.+|.++.|+.  .+.....|+.              ...+. +....+|+|++|++
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK   81 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK   81 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec
Confidence            3689999999999999999999999999999864  2222222221              11122 34567999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~  151 (223)
                      ... +... -+.....++++..++...-| +-.++.+.+.+...++.++.
T Consensus        82 ~~~-~~~~-~~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~  128 (313)
T PRK06249         82 TTA-NALL-APLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL  128 (313)
T ss_pred             CCC-hHhH-HHHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence            443 2222 23445556778888877555 45667777787776766553

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.24  E-value=2.5e-06  Score=63.35  Aligned_cols=65  Identities=26%  Similarity=0.420  Sum_probs=52.2

Q ss_pred             EEEEEcccHHHHHHHHHHccC--CCeE-EEEcCCCCCh-hHHHhhCCeecCCHHhhcc--cCCEEEEcCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPF--NCNL-LYHDRVKMDP-QLEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~--G~~V-~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      +|||||+|.+|+.....+...  +.++ .++|+++... ...+.+++..+++++++++  +.|+|++++|.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~   72 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP   72 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence            799999999999999888765  5565 4788875333 3356678888899999997  78999999993

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.21  E-value=2.4e-06  Score=73.33  Aligned_cols=96  Identities=18%  Similarity=0.233  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhhCCe------ecCCHHhhcccCCEEEEcCC-CCh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAK------FEEDLDTMLPKCDIVVVNTP-LTE  104 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~------~~~~l~e~l~~aDvVv~~~p-~~~  104 (223)
                      .+...+|.|||.|-+|..-|+.+..+|.+|.+.|.+..... ....++.+      ...++++.+.++|+||-++- ...
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            46777899999999999999999999999999998742221 22222322      12467888999999987642 123


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ....++.++.+++||||++|||++
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEE
Confidence            345678899999999999999996

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.21  E-value=1.1e-05  Score=68.74  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=70.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhh---CCeecCCHHhh-cccCCEEEEcCCCCh--h
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET---GAKFEEDLDTM-LPKCDIVVVNTPLTE--K  105 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~---g~~~~~~l~e~-l~~aDvVv~~~p~~~--~  105 (223)
                      ...+++++|+|.|.+|++++..+...|++|.+++|+.... +..+..   +.....++++. ..++|+|+.++|...  .
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~  193 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN  193 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence            3568999999999999999999999999999999975322 222222   21112234443 357999999999642  1


Q ss_pred             hhh-cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 027408          106 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (223)
Q Consensus       106 t~~-~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i  147 (223)
                      ... .+.   .+.++++.+++|+.-.+...  .|.+..++..+
T Consensus       194 ~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~  231 (270)
T TIGR00507       194 IDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGT  231 (270)
T ss_pred             CCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCC
Confidence            111 122   34567888888887655433  35555544433

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.19  E-value=2.2e-05  Score=64.96  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=69.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCCC----------CChhHHHhh-CCeecC-----CHHhhc-ccCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK----------MDPQLEKET-GAKFEE-----DLDTML-PKCD   94 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~-g~~~~~-----~l~e~l-~~aD   94 (223)
                      +|.|++|+|.|+|++|+.+|+.|...|.+++ +.|.+.          ...+..+.. ++..+.     +.++++ .+||
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D   99 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD   99 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence            6899999999999999999999999998754 566544          111111111 222111     223443 4799


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +++-|.+     .+.++.+....++ =.+|+-.+.+++- . .-.+.|.+..+.
T Consensus       100 VlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t-~-~a~~~L~~~Gi~  145 (217)
T cd05211         100 IFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTT-D-EALRILHERGIV  145 (217)
T ss_pred             EEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCC-H-HHHHHHHHCCcE
Confidence            9999998     4577888888776 3345555555554 4 445666666655

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.19  E-value=7.1e-06  Score=72.14  Aligned_cols=99  Identities=30%  Similarity=0.438  Sum_probs=71.3

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHcc-CC-CeEEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhh
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKP-FN-CNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      +..+.+++|.|+|. |.||+.+++.|.. .| .+++.++|+.... +...+++.....++++.+.++|+|+.++...   
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---  226 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---  226 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---
Confidence            34789999999998 8999999999964 56 4799999875322 2233333222346889999999998776522   


Q ss_pred             hh-cccHHHHhcCCCCcEEEEcCCCCccCH
Q 027408          107 RG-MFDKDRIAKMKKGVLIVNNARGAIMDT  135 (223)
Q Consensus       107 ~~-~i~~~~~~~mk~ga~ivn~srg~~vd~  135 (223)
                      .. .++.+.+   +++.++||+++..=||.
T Consensus       227 ~~~~I~~~~l---~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        227 KGVEIDPETL---KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             cCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence            23 3666544   78999999999876653

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.19  E-value=1.5e-05  Score=64.51  Aligned_cols=91  Identities=19%  Similarity=0.215  Sum_probs=65.1

Q ss_pred             ccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHh---hCCeec--CC----HHhhcccCCEEEEcC
Q 027408           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---TGAKFE--ED----LDTMLPKCDIVVVNT  100 (223)
Q Consensus        31 ~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~---~g~~~~--~~----l~e~l~~aDvVv~~~  100 (223)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+|.+.-..  +..   ..-...  .+    +.+.+++||+|+.++
T Consensus        57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv  134 (197)
T cd01079          57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV  134 (197)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence            458999999999975 679999999999999999997543100  000   000000  12    778999999999999


Q ss_pred             CCChhhhhc-ccHHHHhcCCCCcEEEEcCCC
Q 027408          101 PLTEKTRGM-FDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       101 p~~~~t~~~-i~~~~~~~mk~ga~ivn~srg  130 (223)
                      +    ..++ +..+.   +|+|+++||++--
T Consensus       135 G----~~~~~i~~d~---ik~GavVIDVGi~  158 (197)
T cd01079         135 P----SPNYKVPTEL---LKDGAICINFASI  158 (197)
T ss_pred             C----CCCCccCHHH---cCCCcEEEEcCCC
Confidence            8    2344 55554   5799999999843

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=98.19  E-value=3e-06  Score=61.89  Aligned_cols=88  Identities=19%  Similarity=0.146  Sum_probs=59.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      .|+|++|.|||.|.+|..-++.|...|++|+++++..  ........+. ...+++.+..+|+|+.+++.     ..+++
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~~~~~~i~~~-~~~~~~~l~~~~lV~~at~d-----~~~n~   75 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--EFSEGLIQLI-RREFEEDLDGADLVFAATDD-----PELNE   75 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--HHHHTSCEEE-ESS-GGGCTTESEEEE-SS------HHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--hhhhhHHHHH-hhhHHHHHhhheEEEecCCC-----HHHHH
Confidence            6899999999999999999999999999999999864  1111111122 23456778899999988872     22445


Q ss_pred             HHHhcCCCCcEEEEcC
Q 027408          113 DRIAKMKKGVLIVNNA  128 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~s  128 (223)
                      +.....+.-.+++|++
T Consensus        76 ~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   76 AIYADARARGILVNVV   91 (103)
T ss_dssp             HHHHHHHHTTSEEEET
T ss_pred             HHHHHHhhCCEEEEEC
Confidence            5555556556777774

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.18  E-value=1.1e-05  Score=69.21  Aligned_cols=82  Identities=23%  Similarity=0.363  Sum_probs=67.8

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||- ..+|+.+|..|...|+.|+.++...              .++.+.+++||+|+.++.    ..+
T Consensus       152 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG----~p~  213 (284)
T PRK14190        152 YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVG----KPK  213 (284)
T ss_pred             cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecC----CCC
Confidence            356899999999996 6789999999999999999886421              368889999999999997    344


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCc
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      ++..+.+   |+|+++||++...+
T Consensus       214 ~i~~~~i---k~gavVIDvGi~~~  234 (284)
T PRK14190        214 LITADMV---KEGAVVIDVGVNRL  234 (284)
T ss_pred             cCCHHHc---CCCCEEEEeecccc
Confidence            6777765   89999999997663

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=98.17  E-value=2e-05  Score=65.67  Aligned_cols=108  Identities=19%  Similarity=0.277  Sum_probs=72.1

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhH----HHhhC-------CeecCCHHhhc-c
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQL----EKETG-------AKFEEDLDTML-P   91 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~----~~~~g-------~~~~~~l~e~l-~   91 (223)
                      .++.|++|+|.|+|++|+.+|+.|..+|++|+ +.|.+       ....+.    ..+.+       .... +.++++ .
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~  105 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLEL  105 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceee
Confidence            36899999999999999999999999999988 44432       111111    11122       1112 334444 4


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +||+++-|.+     .+.++.+....++  +.+|--+....+. ....+.|.+..+.
T Consensus       106 ~~Dvlip~a~-----~~~i~~~~~~~l~--a~~I~egAN~~~t-~~a~~~L~~rGi~  154 (227)
T cd01076         106 DCDILIPAAL-----ENQITADNADRIK--AKIIVEAANGPTT-PEADEILHERGVL  154 (227)
T ss_pred             cccEEEecCc-----cCccCHHHHhhce--eeEEEeCCCCCCC-HHHHHHHHHCCCE
Confidence            7999999987     5567788888886  4444444444445 5566888888777

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.15  E-value=1.2e-05  Score=70.49  Aligned_cols=89  Identities=18%  Similarity=0.265  Sum_probs=66.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHc-cCCC-eEEEEcCCCCCh-hHHHhh----CC--eecCCHHhhcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDP-QLEKET----GA--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~-~~~~~~----g~--~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|++... +.++++    ++  ...+++++.+++||+|+.++|..  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--  205 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--  205 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence            5679999999999999999996 4675 599999986333 233322    44  33578999999999999999853  


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       ..++..+.   +|+|+.+..++.
T Consensus       206 -~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       206 -TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             -CcEecHHH---cCCCcEEEeeCC
Confidence             34565554   689998887763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.14  E-value=9e-06  Score=71.28  Aligned_cols=89  Identities=21%  Similarity=0.219  Sum_probs=66.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHc-cCCC-eEEEEcCCCCChh-HHH----hhCC--eecCCHHhhcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQ-LEK----ETGA--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~-~~~----~~g~--~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ..++++|||+|.+|+..+..+. ..+. +|.+|+|++...+ ..+    .+++  ..+.+++++++++|+|+.|+|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            5789999999999999988764 4565 5899999863332 222    2243  34678899999999999999944  


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                       +.++.    +.+|+|+.|+.++..
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCCC
Confidence             34443    567999999988753

>PRK06046 alanine dehydrogenase; Validated

Probab=98.14  E-value=1.2e-05  Score=70.53  Aligned_cols=88  Identities=26%  Similarity=0.465  Sum_probs=64.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-CCCe-EEEEcCCCCChh-HHHh----hC--CeecCCHHhhcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-FNCN-LLYHDRVKMDPQ-LEKE----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~G~~-V~~~d~~~~~~~-~~~~----~g--~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .-+++||||+|.+|+..++.+.. .+.+ |.+|||++...+ ..++    .+  +..+++.+++++ +|+|++|+|..  
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--  204 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--  204 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC--
Confidence            45789999999999999998864 4554 889999863332 2222    24  344678999997 99999999953  


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       ..++..+.   +|+|+.|..++.
T Consensus       205 -~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        205 -KPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             -CcEecHHH---cCCCCEEEecCC
Confidence             35666554   589999988874

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=1.4e-05  Score=68.37  Aligned_cols=81  Identities=25%  Similarity=0.362  Sum_probs=66.0

Q ss_pred             cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||-+ .+|+.+|..|...|+.|..+....              .++.+.+++||+|+.++.    ..+
T Consensus       151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvG----kp~  212 (281)
T PRK14183        151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVG----KPN  212 (281)
T ss_pred             cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecC----ccc
Confidence            3568999999999998 899999999998999998876421              357888999999999997    334


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+.   +|+|+++||++-..
T Consensus       213 ~i~~~~---vk~gavvIDvGin~  232 (281)
T PRK14183        213 LITEDM---VKEGAIVIDIGINR  232 (281)
T ss_pred             ccCHHH---cCCCcEEEEeeccc
Confidence            566555   57999999998544

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.09  E-value=2e-05  Score=66.85  Aligned_cols=92  Identities=20%  Similarity=0.290  Sum_probs=61.1

Q ss_pred             CEEEEEcc-cHHHHHHHHHHcc-CCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      .+|+|+|+ |.||+.+++.+.. -++++. ++|+...........++..+.+++++++.+|+|+.++|  |...   .+-
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~--p~~~---~~~   76 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT--PEAT---LEN   76 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC--HHHH---HHH
Confidence            58999998 9999999999875 478855 57876532222234455566799999989999998887  3332   233


Q ss_pred             HHhcCCCCcEEEEcCCCCcc
Q 027408          114 RIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~v  133 (223)
                      ....++.|..+|-...|--.
T Consensus        77 ~~~al~~G~~vvigttG~s~   96 (257)
T PRK00048         77 LEFALEHGKPLVIGTTGFTE   96 (257)
T ss_pred             HHHHHHcCCCEEEECCCCCH
Confidence            34445556666644444333

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=3.1e-05  Score=66.32  Aligned_cols=81  Identities=25%  Similarity=0.337  Sum_probs=66.2

Q ss_pred             cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||-+ .+|+.+|..|...|+.|+.+....              .++.+.+++||+|+.+++    ..+
T Consensus       151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG----~~~  212 (284)
T PRK14170        151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATG----LAK  212 (284)
T ss_pred             hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcC
Confidence            3568999999999974 679999999999999999887532              368888999999999998    234


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+.   +|+|+++||++...
T Consensus       213 ~i~~~~---vk~GavVIDvGin~  232 (284)
T PRK14170        213 FVKKDY---IKPGAIVIDVGMDR  232 (284)
T ss_pred             ccCHHH---cCCCCEEEEccCcc
Confidence            566555   57999999998665

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.07  E-value=1.7e-05  Score=68.21  Aligned_cols=70  Identities=26%  Similarity=0.271  Sum_probs=52.7

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhhC-----C--eecCCHHhhcccCCEEEEcCCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETG-----A--KFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~g-----~--~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      .+.++++.|+|.|.+|++++..|...|+ +|.++||+... ...++.++     .  ....++.+.++++|+||.++|.
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~  202 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT  202 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence            5788999999999999999999999998 69999998532 22333221     1  1223455677889999999984

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=3.9e-05  Score=65.63  Aligned_cols=80  Identities=25%  Similarity=0.387  Sum_probs=65.9

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.+....              .++.+..++||+|+.+++    ..++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvG----kp~~  214 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIG----RPKF  214 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence            46899999999997 5689999999999999999887532              368888999999999998    3345


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +..+.   +|+|+++||++-..
T Consensus       215 i~~~~---ik~gavVIDvGin~  233 (278)
T PRK14172        215 IDEEY---VKEGAIVIDVGTSS  233 (278)
T ss_pred             cCHHH---cCCCcEEEEeeccc
Confidence            66665   68999999997544

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=4.4e-05  Score=65.87  Aligned_cols=81  Identities=22%  Similarity=0.309  Sum_probs=66.2

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.+....              .++++.+++||+|+.+++    ..++
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvG----kp~~  214 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAG----RPNL  214 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence            56899999999997 5679999999999999999886532              268888999999999998    2345


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      +..+.   +|+|+++||++-..+
T Consensus       215 i~~~~---ik~gavVIDvGin~~  234 (297)
T PRK14186        215 IGAEM---VKPGAVVVDVGIHRL  234 (297)
T ss_pred             cCHHH---cCCCCEEEEeccccc
Confidence            66554   579999999986664

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.03  E-value=2.2e-05  Score=68.56  Aligned_cols=87  Identities=15%  Similarity=0.189  Sum_probs=62.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      .+|||+|+|+||+.+++.+... ++++. ++++++. .......++....+.++++.+.|+|++|+|....     -+..
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~   77 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQ   77 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHH
Confidence            5899999999999999999765 78866 5788641 1222334444445777888899999999994322     2555


Q ss_pred             HhcCCCCcEEEEcCC
Q 027408          115 IAKMKKGVLIVNNAR  129 (223)
Q Consensus       115 ~~~mk~ga~ivn~sr  129 (223)
                      ...++.|.-+|+..-
T Consensus        78 ~~~L~aG~NVV~s~~   92 (324)
T TIGR01921        78 APYFAQFANTVDSFD   92 (324)
T ss_pred             HHHHHcCCCEEECCC
Confidence            566777878888753

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=2.7e-05  Score=66.81  Aligned_cols=82  Identities=21%  Similarity=0.308  Sum_probs=67.2

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||- ..+|+.+|..|...|+.|+.+....              .++++.+++||+|+.++.    ..+
T Consensus       149 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvG----kp~  210 (287)
T PRK14173        149 YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVG----RPH  210 (287)
T ss_pred             cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcC
Confidence            356899999999997 5789999999999999999887532              267888999999999997    235


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCc
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      ++..+.   +|+|+++||++...+
T Consensus       211 ~i~~~~---vk~GavVIDVGin~~  231 (287)
T PRK14173        211 LITPEM---VRPGAVVVDVGINRV  231 (287)
T ss_pred             ccCHHH---cCCCCEEEEccCccc
Confidence            666655   589999999997664

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.01  E-value=2.4e-05  Score=68.03  Aligned_cols=115  Identities=22%  Similarity=0.253  Sum_probs=72.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHh---------h--CCeecCCHHhhcccCCEEEEcCCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE---------T--GAKFEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~---------~--g~~~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ++|+|||.|.||..+|..+...|. +|..+|....... .+.+         .  .+....++++ +++||+|+++++..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999988765 8999998653221 1100         0  1223357776 78999999998731


Q ss_pred             hh-----------hhhcccHH---HHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCccEEE--ee
Q 027408          104 EK-----------TRGMFDKD---RIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS--GD  153 (223)
Q Consensus       104 ~~-----------t~~~i~~~---~~~~mk~ga~ivn~srg~~vd~~al~~~--L~~g~i~~a~--lD  153 (223)
                      ..           +..++ ++   .+....+++++|+++..-=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv-~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIV-REVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            11           11111 22   2223347889999987554445555555  5555666665  56

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.00  E-value=4.1e-05  Score=67.25  Aligned_cols=93  Identities=6%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .+.+++|.|||.|.||+.+|+.|...|. +|++.+|+....+.. ..   .. ..-++..++|+|+.|+..|......+.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~-~~---~~-~~~~~~~~~DvVIs~t~~Tas~~p~i~  245 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYR-TV---VR-EELSFQDPYDVIFFGSSESAYAFPHLS  245 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchh-hh---hh-hhhhcccCCCEEEEcCCcCCCCCceee
Confidence            5899999999999999999999999996 599999986321111 00   00 111445789999987543334445666


Q ss_pred             HHHHhcCCCCcEEEEcCCCC
Q 027408          112 KDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~  131 (223)
                      .+.++..++ .+++|.+-..
T Consensus       246 ~~~~~~~~~-r~~iDLAvPR  264 (338)
T PRK00676        246 WESLADIPD-RIVFDFNVPR  264 (338)
T ss_pred             HHHHhhccC-cEEEEecCCC
Confidence            666655432 3788887554

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=5.3e-05  Score=65.06  Aligned_cols=80  Identities=21%  Similarity=0.294  Sum_probs=65.3

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.+....              .++.+.+++||+|+.++.    -.++
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvG----kp~~  215 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIG----SPLK  215 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CCCc
Confidence            45799999999997 5679999999999999999887432              368889999999999998    2346


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +..+.   +|+|+++||++-..
T Consensus       216 i~~~~---vk~GavVIDvGin~  234 (288)
T PRK14171        216 LTAEY---FNPESIVIDVGINR  234 (288)
T ss_pred             cCHHH---cCCCCEEEEeeccc
Confidence            66655   57999999998544

>PRK06823 ornithine cyclodeaminase; Validated

Probab=98.00  E-value=2.5e-05  Score=68.21  Aligned_cols=90  Identities=19%  Similarity=0.315  Sum_probs=66.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChhH-HH---hhCC--eecCCHHhhcccCCEEEEcCCCChhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQL-EK---ETGA--KFEEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~-~~---~~g~--~~~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      .-++++|||.|..|+..++.+.. +.. +|.+|+|++...+. .+   ..++  ..+++.++++++||+|+.+++.+   
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---  203 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---  203 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---
Confidence            46799999999999999988854 344 69999998744332 21   1233  34678999999999999998733   


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      ..++..+   .+|+|+.|+.++..
T Consensus       204 ~P~~~~~---~l~~G~hi~~iGs~  224 (315)
T PRK06823        204 EPLLQAE---DIQPGTHITAVGAD  224 (315)
T ss_pred             CceeCHH---HcCCCcEEEecCCC
Confidence            4666655   46899999999853

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.99  E-value=4.6e-05  Score=66.68  Aligned_cols=117  Identities=19%  Similarity=0.265  Sum_probs=70.3

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhH-HH--h-----hC----CeecCCHHhhcccCCEEEEcC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EK--E-----TG----AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~-~~--~-----~g----~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      +..++|+|||.|.+|..+|..+...| .++..+|++....+. +.  .     .+    +....+++ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            45679999999999999999988777 689999987532211 11  0     11    12224666 679999999998


Q ss_pred             --CCChh-hhh-------cccH---HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH--hCCccEEE
Q 027408          101 --PLTEK-TRG-------MFDK---DRIAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS  151 (223)
Q Consensus       101 --p~~~~-t~~-------~i~~---~~~~~mk~ga~ivn~srg~~vd~~al~~~L~--~g~i~~a~  151 (223)
                        |..+. ++.       -+-.   +.+....|.+++++++...=+-...+.+.-.  ..++.|.+
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence              43331 000       0112   2233345788888887654333444444321  34566555

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=3.7e-05  Score=65.86  Aligned_cols=81  Identities=19%  Similarity=0.324  Sum_probs=66.3

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||- ..+|+.+|..|...|+.|+.++...              .++.+.+++||+|+.++.    ..+
T Consensus       153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvG----k~~  214 (284)
T PRK14177        153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVG----KPE  214 (284)
T ss_pred             hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCC----CcC
Confidence            356899999999997 5789999999999999999988532              367888999999999998    344


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+.   +|+|+++||++-..
T Consensus       215 ~i~~~~---ik~gavVIDvGin~  234 (284)
T PRK14177        215 FIKADW---ISEGAVLLDAGYNP  234 (284)
T ss_pred             ccCHHH---cCCCCEEEEecCcc
Confidence            566554   57999999998644

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.98  E-value=2.2e-05  Score=68.91  Aligned_cols=88  Identities=16%  Similarity=0.307  Sum_probs=62.9

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChh-HHHh----hCCe--ecCCHHhhcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQ-LEKE----TGAK--FEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~-~~~~----~g~~--~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ..++++|||.|.+|+..+..+.. .+. +|.+|+|++...+ ..++    +++.  .+.++++++.++|+|+.++|..  
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--  208 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--  208 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence            46799999999999999888874 554 6999999863332 2222    2443  3578899999999999999843  


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                       ..++..+.   +++|+.+..++
T Consensus       209 -~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        209 -EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             -CcEecHHH---cCCCceEEeeC
Confidence             34555543   57787776643

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=3.6e-05  Score=65.90  Aligned_cols=81  Identities=20%  Similarity=0.311  Sum_probs=66.1

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||- ..+|+.+|..|...|+.|+.+....              .++.+.+++||+|+.+++    ..+
T Consensus       150 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG----~p~  211 (282)
T PRK14169        150 YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVG----VPH  211 (282)
T ss_pred             hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccC----CcC
Confidence            356899999999997 5679999999999999999886432              268888999999999998    344


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+.   +|+|+++||++--.
T Consensus       212 ~i~~~~---vk~GavVIDvGin~  231 (282)
T PRK14169        212 FIGADA---VKPGAVVIDVGISR  231 (282)
T ss_pred             ccCHHH---cCCCcEEEEeeccc
Confidence            566654   68999999998655

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.98  E-value=4.4e-05  Score=62.29  Aligned_cols=61  Identities=18%  Similarity=0.246  Sum_probs=46.5

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      ++|+|||. |.||+.++..++..|+.|.                          +++||+|++|+|-.. +     .+.+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~-~-----~~~i   48 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA-A-----LNYI   48 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH-H-----HHHH
Confidence            48999998 9999999999999999885                          368999999999221 1     3334


Q ss_pred             hcCCCCcEEEEcCCCC
Q 027408          116 AKMKKGVLIVNNARGA  131 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~  131 (223)
                      +.+.  .+++|++.-+
T Consensus        49 ~~~~--~~v~Dv~SvK   62 (197)
T PRK06444         49 ESYD--NNFVEISSVK   62 (197)
T ss_pred             HHhC--CeEEeccccC
Confidence            4443  3788988644

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.98  E-value=3e-05  Score=67.27  Aligned_cols=91  Identities=11%  Similarity=0.151  Sum_probs=67.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChh-HHHh----hC--CeecCCHHhhcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQ-LEKE----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~-~~~~----~g--~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .-+++||||.|..|+..++.+.. +.. +|.+|+|++...+ .+++    .+  +..+++.++++.+||+|+.++|.+  
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--  193 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--  193 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence            46899999999999999988864 455 5999999864332 2222    24  345679999999999999999843  


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                       ..++..+   .+|||+.|.-++...
T Consensus       194 -~P~~~~~---~l~pg~hV~aiGs~~  215 (301)
T PRK06407        194 -TPIFNRK---YLGDEYHVNLAGSNY  215 (301)
T ss_pred             -CcEecHH---HcCCCceEEecCCCC
Confidence             4666655   457898887776533

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.97  E-value=6.9e-05  Score=69.04  Aligned_cols=72  Identities=25%  Similarity=0.364  Sum_probs=52.4

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhhCCeecCCHHhh--cccCCEEEEcCCCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTM--LPKCDIVVVNTPLT  103 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~--l~~aDvVv~~~p~~  103 (223)
                      +..+.+++++|+|.|.+|++++..+...|++|.+++|+.... +..+..+.... +++++  +.++|+|+.|+|..
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g  401 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPS  401 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCC
Confidence            456789999999999999999999999999999999875322 22233322211 22322  56899999999954

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.97  E-value=3.1e-05  Score=69.09  Aligned_cols=90  Identities=21%  Similarity=0.238  Sum_probs=63.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhh----------CCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKET----------GAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~----------g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ++|.|||+|.||+.+|..|.+.| .+|++.||+..........          .+...+.+.+++++.|+|+.++|..  
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~--   79 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF--   79 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence            68999999999999999999888 8999999985333322222          1222356778899999999999832  


Q ss_pred             hhhcccHHHH-hcCCCCcEEEEcCCCCc
Q 027408          106 TRGMFDKDRI-AKMKKGVLIVNNARGAI  132 (223)
Q Consensus       106 t~~~i~~~~~-~~mk~ga~ivn~srg~~  132 (223)
                          ++...+ +.++.|...++++-.+-
T Consensus        80 ----~~~~i~ka~i~~gv~yvDts~~~~  103 (389)
T COG1748          80 ----VDLTILKACIKTGVDYVDTSYYEE  103 (389)
T ss_pred             ----hhHHHHHHHHHhCCCEEEcccCCc
Confidence                222333 44566777777775543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.97  E-value=1.2e-05  Score=70.22  Aligned_cols=93  Identities=20%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             CCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChh-HHHh---hC--CeecCCHHhhcccCCEEEEcCCCChhhh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQ-LEKE---TG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~-~~~~---~g--~~~~~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      -++++|||.|..|+..++.+.. ++. +|.+|+|++...+ +++.   ++  +..+++.++++++||+|+.++|.+..+ 
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-  206 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-  206 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence            4689999999999999998854 565 5999999863222 2221   23  345689999999999999999855422 


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCc
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      .++..+   .+++|+.|+.++....
T Consensus       207 P~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  207 PVFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             ESB-GG---GS-TT-EEEE-S-SST
T ss_pred             ccccHH---HcCCCcEEEEecCCCC
Confidence            455543   6789999999987544

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=4.1e-05  Score=65.57  Aligned_cols=81  Identities=21%  Similarity=0.335  Sum_probs=66.3

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||- ..+|+.+|..|...++.|+.+....              .++++..++||+|+.++.    -.+
T Consensus       151 y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvG----kp~  212 (282)
T PRK14166        151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAG----CVN  212 (282)
T ss_pred             hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcC
Confidence            356899999999997 4679999999998999999887532              368889999999999998    344


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+.   +|+|+++||++-..
T Consensus       213 ~i~~~~---vk~GavVIDvGin~  232 (282)
T PRK14166        213 LLRSDM---VKEGVIVVDVGINR  232 (282)
T ss_pred             ccCHHH---cCCCCEEEEecccc
Confidence            566654   57999999998544

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.96  E-value=3.6e-05  Score=62.94  Aligned_cols=96  Identities=25%  Similarity=0.302  Sum_probs=69.3

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC---CCCh--------h--------HHH---hhC----Cee--
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV---KMDP--------Q--------LEK---ETG----AKF--   82 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~---~~~~--------~--------~~~---~~g----~~~--   82 (223)
                      ..|..++|+|+|+|.+|..+|+.|...|. +++++|+.   ....        +        ..+   +.+    +..  
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            36899999999999999999999999998 59999987   1100        0        000   111    111  


Q ss_pred             ----cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           83 ----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        83 ----~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                          .++++++++++|+|+.| ..++.++..+..+....++...++...+
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g  145 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG  145 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence                12455678899999988 6788899888888888888766666433

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.95  E-value=5.1e-05  Score=65.00  Aligned_cols=81  Identities=22%  Similarity=0.309  Sum_probs=65.6

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||- ..+|+.+|..|...|+.|+.+....              .++.+..++||+|+.+++    ..+
T Consensus       152 y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvG----kp~  213 (282)
T PRK14180        152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVG----KPN  213 (282)
T ss_pred             hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccC----CcC
Confidence            356899999999997 5689999999999999999887532              367788999999999998    234


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+.   +|+|+++||++-..
T Consensus       214 ~i~~~~---vk~gavVIDvGin~  233 (282)
T PRK14180        214 FITADM---VKEGAVVIDVGINH  233 (282)
T ss_pred             cCCHHH---cCCCcEEEEecccc
Confidence            566554   57999999998543

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.94  E-value=9.8e-05  Score=67.08  Aligned_cols=111  Identities=17%  Similarity=0.299  Sum_probs=73.2

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC--------CChh-HH-----------------HhhCCeecC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--------MDPQ-LE-----------------KETGAKFEE   84 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~--------~~~~-~~-----------------~~~g~~~~~   84 (223)
                      +.+|.|++|.|.|+|++|...|+.|..+|++|++++.+.        ...+ ..                 ...+.... 
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-  301 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-  301 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-
Confidence            457999999999999999999999999999988744311        1110 00                 01123333 


Q ss_pred             CHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCCC-CcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        85 ~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~-ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +.++++ ..||+++-|.-     .+.|+.+....++. +..+|--+.......++.. .|.+..|.
T Consensus       302 ~~d~~~~~~cDIliPaAl-----~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~-~L~~rgI~  361 (444)
T PRK14031        302 EGARPWGEKGDIALPSAT-----QNELNGDDARQLVANGVIAVSEGANMPSTPEAIK-VFQDAKIL  361 (444)
T ss_pred             CCcccccCCCcEEeeccc-----ccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHH-HHHHCCcE
Confidence            344554 46999988764     67788888888864 5555555555567766654 44444444

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.93  E-value=0.00033  Score=59.25  Aligned_cols=110  Identities=15%  Similarity=0.229  Sum_probs=73.4

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEc-------CCCCChh-H------HHhh------------CCeec
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHD-------RVKMDPQ-L------EKET------------GAKFE   83 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d-------~~~~~~~-~------~~~~------------g~~~~   83 (223)
                      +.++.|+||.|.|+|++|+.+|+.|...|++|+ +.|       +.....+ +      ....            +.+..
T Consensus        33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~  112 (254)
T cd05313          33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF  112 (254)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence            357899999999999999999999999999988 444       2211111 1      0011            12333


Q ss_pred             CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK--KGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        84 ~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk--~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                       +.++++ .+||+++-|.-     .+.|+.+..+.++  +=.+|+-.+.+++ .. +-.+.|.+..|.
T Consensus       113 -~~~~~~~~~~DIliPcAl-----~~~I~~~na~~i~~~~ak~I~EgAN~p~-t~-~a~~~L~~rGI~  172 (254)
T cd05313         113 -EGKKPWEVPCDIAFPCAT-----QNEVDAEDAKLLVKNGCKYVAEGANMPC-TA-EAIEVFRQAGVL  172 (254)
T ss_pred             -CCcchhcCCCcEEEeccc-----cccCCHHHHHHHHHcCCEEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence             444554 46999988864     6788888888874  2345566666665 44 455777777776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=5.8e-05  Score=65.03  Aligned_cols=80  Identities=21%  Similarity=0.320  Sum_probs=66.0

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.+....              .++.+.+++||+|+.++.    ..++
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvG----kp~~  216 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVG----IPNF  216 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence            56899999999997 5679999999999999999887532              367888999999999998    3345


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +..+.   +|+|+++||++-..
T Consensus       217 i~~~~---ik~gaiVIDVGin~  235 (294)
T PRK14187        217 VKYSW---IKKGAIVIDVGINS  235 (294)
T ss_pred             cCHHH---cCCCCEEEEecccc
Confidence            66655   57999999998654

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.92  E-value=5.9e-05  Score=65.12  Aligned_cols=81  Identities=19%  Similarity=0.256  Sum_probs=66.2

Q ss_pred             cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||-+ .+|+.+|..|...|+.|+.+....              .++++.+++||+|+.++.-    .+
T Consensus       161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------~nl~~~~~~ADIvv~AvGk----~~  222 (299)
T PLN02516        161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------PDPESIVREADIVIAAAGQ----AM  222 (299)
T ss_pred             hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cC
Confidence            3568999999999974 679999999999999999987532              3688899999999999972    35


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+.   +|+|+++||++--.
T Consensus       223 ~i~~~~---vk~gavVIDvGin~  242 (299)
T PLN02516        223 MIKGDW---IKPGAAVIDVGTNA  242 (299)
T ss_pred             ccCHHH---cCCCCEEEEeeccc
Confidence            666555   57999999998655

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.92  E-value=2.3e-05  Score=60.55  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=70.3

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--------------CCHHhhcccCCEEEEcCCCCh
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--------------EDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--------------~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      |+|+|.|.||..+|..|+..|.+|.++.+.. ..+..++.|+...              ....+....+|+|++|+...+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence            7899999999999999988999999999865 3333333343211              111234567999999998433


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~  151 (223)
                      . ...+ +.....+.+++.++..-.| +-.++.+.+.+...++.++.
T Consensus        80 ~-~~~l-~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   80 L-EQAL-QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             H-HHHH-HHHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             h-HHHH-HHHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence            2 2332 3355555667677766554 55566676676555665443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.91  E-value=4e-05  Score=68.59  Aligned_cols=94  Identities=17%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-CC-C-eEEEEcCCCCChh-HHH----hh-C---CeecCCHHhhcccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-C-NLLYHDRVKMDPQ-LEK----ET-G---AKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~G-~-~V~~~d~~~~~~~-~~~----~~-g---~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      .-++++|||.|..++..++.+.. +. . +|.+|+|++...+ ..+    .+ +   +..+++.++++++||+|+.|++.
T Consensus       154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s  233 (379)
T PRK06199        154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG  233 (379)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence            45789999999999999998865 43 4 6999999864332 222    22 2   44568999999999999999975


Q ss_pred             Ch---hhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          103 TE---KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       103 ~~---~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++   .+..++..+   .+|+|+.|+.++.-+
T Consensus       234 ~~~~~s~~Pv~~~~---~lkpG~hv~~ig~~e  262 (379)
T PRK06199        234 ETGDPSTYPYVKRE---WVKPGAFLLMPAACR  262 (379)
T ss_pred             CCCCCCcCcEecHH---HcCCCcEEecCCccc
Confidence            43   334666655   457999888776543

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=7.4e-05  Score=64.15  Aligned_cols=81  Identities=21%  Similarity=0.232  Sum_probs=66.0

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHcc----CCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCCh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      .+.++.||++.|||- ..+|+.+|..|..    .++.|..+....              .++.+.+++||+|+.+++   
T Consensus       151 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG---  213 (286)
T PRK14184        151 YGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIG---  213 (286)
T ss_pred             hCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecC---
Confidence            356899999999997 5679999999987    788988887532              368899999999999996   


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                       ..+++..+.+   |+|+++||++--.
T Consensus       214 -~p~li~~~~v---k~GavVIDVGi~~  236 (286)
T PRK14184        214 -RPRFVTADMV---KPGAVVVDVGINR  236 (286)
T ss_pred             -CCCcCCHHHc---CCCCEEEEeeeec
Confidence             3456777665   8999999998543

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.90  E-value=0.00052  Score=62.43  Aligned_cols=157  Identities=13%  Similarity=0.139  Sum_probs=94.2

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEE--------EcCCCCChhHH---H---------------hh-CCeec
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY--------HDRVKMDPQLE---K---------------ET-GAKFE   83 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~--------~d~~~~~~~~~---~---------------~~-g~~~~   83 (223)
                      +.+|.|+||+|-|+|++|+..|+.|...|++|++        ||++....+..   .               .+ +.+.+
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            4579999999999999999999999999999998        78664333220   0               11 33333


Q ss_pred             CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCC-CCc-EEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        84 ~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga-~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                       +.++++ .+||+++-|.-     .+.|+.+....+. .++ +|+-.+.+ .++.+|- +.|.+..|. .+=|..-+---
T Consensus       303 -~~~~~~~~~cDVliPcAl-----~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGG  373 (445)
T PRK14030        303 -AGKKPWEQKVDIALPCAT-----QNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGG  373 (445)
T ss_pred             -CCccceeccccEEeeccc-----cccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCC
Confidence             344554 46999888764     6778888777773 234 45555556 6666544 667777666 33333222100


Q ss_pred             C--CCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 027408          161 P--KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF  201 (223)
Q Consensus       161 ~--~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~  201 (223)
                      -  .-.++.  .|   .-|.-|...+..+++...+.+...+.+
T Consensus       374 Vivs~~E~~--qn---~~~~~w~~eeV~~~L~~~m~~~~~~v~  411 (445)
T PRK14030        374 VATSGLEMS--QN---AMHLSWSAEEVDEKLHQIMSGIHEQCV  411 (445)
T ss_pred             eeeehhhhh--cc---ccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            0  000111  11   245556666666666665555444443

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=6.2e-05  Score=64.55  Aligned_cols=82  Identities=18%  Similarity=0.234  Sum_probs=66.2

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHcc--CCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      .+.++.||++.|||- +.+|+.+|..|..  .++.|.++....              .++.+.+++||+|+.++.    .
T Consensus       152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T--------------~~l~~~~k~ADIvV~AvG----k  213 (284)
T PRK14193        152 YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT--------------RDLAAHTRRADIIVAAAG----V  213 (284)
T ss_pred             hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC--------------CCHHHHHHhCCEEEEecC----C
Confidence            356899999999996 5789999999987  789999887532              368889999999999998    2


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      .+++..+.   +|+|+++||++...+
T Consensus       214 p~~i~~~~---ik~GavVIDvGin~~  236 (284)
T PRK14193        214 AHLVTADM---VKPGAAVLDVGVSRA  236 (284)
T ss_pred             cCccCHHH---cCCCCEEEEcccccc
Confidence            34566555   579999999997653

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.90  E-value=5.7e-06  Score=68.17  Aligned_cols=124  Identities=16%  Similarity=0.155  Sum_probs=83.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------h------------------CCeec
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------T------------------GAKFE   83 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~------------------g~~~~   83 (223)
                      ...-+.|+|||.|.||+.+|+.....|+.|..+|++......+.+           .                  .+...
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~   87 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS   87 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence            345578999999999999999999999999999998643221110           0                  01223


Q ss_pred             CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           84 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        84 ~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv-n~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ++..++++++|+|+-+.-.+.+.+.-+.++.-+..|+.+++. |+|   -+...++..+++... ++++|-.|.+-|.
T Consensus        88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTS---Sl~lt~ia~~~~~~s-rf~GlHFfNPvPv  161 (298)
T KOG2304|consen   88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTS---SLSLTDIASATQRPS-RFAGLHFFNPVPV  161 (298)
T ss_pred             CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccc---ceeHHHHHhhccChh-hhceeeccCCchh
Confidence            567778888998888876555544444455555567777763 444   345666777766544 4478887776553

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=7.2e-05  Score=64.06  Aligned_cols=80  Identities=19%  Similarity=0.247  Sum_probs=65.7

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.||++.|||- ..+|+.+|..|...++.|+.+....              .++++.+++||+|+.+++    ..++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvG----k~~~  213 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIG----KAEL  213 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcCc
Confidence            56899999999997 5679999999998899999887532              367888999999999998    2446


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +..+.   +|+|+++||++-..
T Consensus       214 i~~~~---ik~gaiVIDvGin~  232 (282)
T PRK14182        214 VKGAW---VKEGAVVIDVGMNR  232 (282)
T ss_pred             cCHHH---cCCCCEEEEeecee
Confidence            66655   57999999998655

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.89  E-value=6.3e-05  Score=66.25  Aligned_cols=81  Identities=12%  Similarity=0.216  Sum_probs=66.5

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||- ..+|+.+|..|...++.|..+....              .++++.+++||+||.++.    ..+
T Consensus       225 y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvG----kp~  286 (364)
T PLN02616        225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVG----QPN  286 (364)
T ss_pred             hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcC
Confidence            356899999999996 5679999999999999999887532              368888999999999997    344


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+.   +|+|+++||++-..
T Consensus       287 ~i~~d~---vK~GAvVIDVGIn~  306 (364)
T PLN02616        287 MVRGSW---IKPGAVVIDVGINP  306 (364)
T ss_pred             cCCHHH---cCCCCEEEeccccc
Confidence            566655   57999999998655

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.88  E-value=5e-05  Score=62.33  Aligned_cols=92  Identities=18%  Similarity=0.130  Sum_probs=61.8

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhhCCeec--CCHHhhcccCCEEEEcCCCChhhh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .+|+|++|.|||.|.+|..-++.|...|++|+++++.....  +......+...  .--.+.+..+|+|+.++.. ++  
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d-~~--   81 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDD-EE--   81 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCC-HH--
Confidence            46899999999999999999999999999999999865321  11222233221  1113457789998877663 22  


Q ss_pred             hcccHHHHhcCCCCcEEEEcC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~s  128 (223)
                        ++.......++-.++||+.
T Consensus        82 --ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        82 --LNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             --HHHHHHHHHHHcCCEEEEC
Confidence              3445555555556777763

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.88  E-value=0.00011  Score=65.18  Aligned_cols=128  Identities=16%  Similarity=0.206  Sum_probs=88.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------------h--C-CeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------------T--G-AKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------------~--g-~~~~~~l~e~l~~aDvV   96 (223)
                      |+|.|+|.|-+|-..+..+..+|++|+.+|..+...+....                 .  | +...++.++.++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            68999999999999999999999999999987532221111                 1  1 34557888899999999


Q ss_pred             EEcCCCChhhhhccc--------HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeC-CCCCCCCCCCC
Q 027408           97 VVNTPLTEKTRGMFD--------KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-WNPQPAPKDHP  165 (223)
Q Consensus        97 v~~~p~~~~t~~~i~--------~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv-~~~ep~~~~~~  165 (223)
                      ++|+|..+...+.+|        ++..+.++..+++|+-|.-.+=..+.+.+.+.+..-.. -.+| +.+|-+...+.
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~A  157 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSA  157 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcch
Confidence            999985443334333        45667777779999999888877777777665544322 2232 44454444333

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=8.2e-05  Score=63.88  Aligned_cols=81  Identities=21%  Similarity=0.318  Sum_probs=65.2

Q ss_pred             ccCCCCCEEEEEccc-HHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        31 ~~~l~g~~igIiG~G-~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.|+.+....              .++++.+++||+|+.+++    
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG----  209 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIG----  209 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----
Confidence            568999999999974 6799999999877    78888876532              368888999999999997    


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      ..+++..+.   +|+|+++||++-..+
T Consensus       210 ~p~~i~~~~---ik~GavVIDvGin~~  233 (287)
T PRK14181        210 VPLFIKEEM---IAEKAVIVDVGTSRV  233 (287)
T ss_pred             CcCccCHHH---cCCCCEEEEeccccc
Confidence            234566655   579999999986553

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.87  E-value=4.9e-05  Score=57.37  Aligned_cols=103  Identities=20%  Similarity=0.258  Sum_probs=62.5

Q ss_pred             CEEEEEcc-cHHHHHHHHHHcc-CCCe-EEEEcCCCCCh---hHH-----HhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKP-FNCN-LLYHDRVKMDP---QLE-----KETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~-~G~~-V~~~d~~~~~~---~~~-----~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .+|+|+|+ |+||+.+++.+.. -+++ +.+++++....   +..     ...++...+++++++.++|+|+-..  +|+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~   78 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD   78 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence            37999999 9999999999987 6888 45777765111   111     1345666789999999999998777  243


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ...-.-+..   ++.+..+|-.+.|---++.+.++.+.+
T Consensus        79 ~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~  114 (124)
T PF01113_consen   79 AVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK  114 (124)
T ss_dssp             HHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred             HhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence            322211222   344677777777774444444444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.86  E-value=7.4e-05  Score=55.89  Aligned_cols=90  Identities=18%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             EEEEEc-ccHHHHHHHHHHccC-CCeEEEE-cCCC-CChhHHHhhC-Ce--ecCCH--Hhh-cccCCEEEEcCCCChhhh
Q 027408           38 TVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVK-MDPQLEKETG-AK--FEEDL--DTM-LPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        38 ~igIiG-~G~iG~~iA~~l~~~-G~~V~~~-d~~~-~~~~~~~~~g-~~--~~~~l--~e~-l~~aDvVv~~~p~~~~t~  107 (223)
                      +++|+| .|.+|+.+++.+... ++++.++ +++. .........+ +.  .....  +++ ..++|+|++|+|......
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            589999 599999999999874 7776655 5432 1111121211 11  01111  122 148999999999553332


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .+  ......+++|.++|+++.
T Consensus        81 ~~--~~~~~~~~~g~~viD~s~  100 (122)
T smart00859       81 IA--PLLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             HH--HHHHhhhcCCCEEEECCc
Confidence            22  234556789999999974

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=6.6e-05  Score=64.78  Aligned_cols=80  Identities=18%  Similarity=0.321  Sum_probs=64.9

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHcc----CCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      +.++.||++.|||- ..+|+.+|..|..    .+..|..+..+.              .++++.+++||+|+.+++.   
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~---  216 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGK---  216 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCc---
Confidence            56899999999997 5679999999876    578888777532              2578889999999999972   


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                       .+++..+.+   |+|+++||++-..
T Consensus       217 -~~li~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        217 -ARFITADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             -cCccCHHHc---CCCCEEEEeeccc
Confidence             256777776   8999999998554

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.86  E-value=7.5e-05  Score=65.47  Aligned_cols=81  Identities=15%  Similarity=0.274  Sum_probs=65.9

Q ss_pred             cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||-+ .+|+.+|..|...|+.|..+....              .++++.+++||+||.++.    ..+
T Consensus       208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvG----kp~  269 (345)
T PLN02897        208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAG----IPN  269 (345)
T ss_pred             hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccC----CcC
Confidence            3568999999999974 679999999999999998887532              267888999999999998    344


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+.   +|+|+++||++--.
T Consensus       270 ~v~~d~---vk~GavVIDVGin~  289 (345)
T PLN02897        270 LVRGSW---LKPGAVVIDVGTTP  289 (345)
T ss_pred             ccCHHH---cCCCCEEEEccccc
Confidence            566655   57999999998655

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.85  E-value=8.7e-05  Score=60.78  Aligned_cols=91  Identities=15%  Similarity=0.167  Sum_probs=58.5

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhhCCeec--CCHHhhcccCCEEEEcCCCChhhh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .+|.|++|.|||.|.+|...++.|...|++|+++++.....  +......+...  .-.++.+..+|+|+.++...+.+ 
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN-   84 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN-   84 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH-
Confidence            47999999999999999999999999999999999854221  11221112211  11234577899998887743333 


Q ss_pred             hcccHHHHhcCCCCcEEEEcC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~s  128 (223)
                          .......+.+ .++|++
T Consensus        85 ----~~i~~~a~~~-~lvn~~  100 (202)
T PRK06718         85 ----EQVKEDLPEN-ALFNVI  100 (202)
T ss_pred             ----HHHHHHHHhC-CcEEEC
Confidence                3333333334 466763

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.85  E-value=6.3e-05  Score=66.48  Aligned_cols=91  Identities=14%  Similarity=0.189  Sum_probs=64.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHc-cCCC-eEEEEcCCCCChh-HHHhh---C--CeecCCHHhhcccCCEEEEcCCCChhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQ-LEKET---G--AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~-~~~~~---g--~~~~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      .-++++|||.|..++..++.+. -+.. +|.+|+|++...+ ..++.   +  +..+++.++++++||+|+.++|.++ .
T Consensus       128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~  206 (346)
T PRK07589        128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-N  206 (346)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-C
Confidence            4578999999999999988764 4455 5999999864332 22222   3  3446799999999999999997332 1


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ..++..+   .+|+|+.|.-++.
T Consensus       207 ~Pvl~~~---~lkpG~hV~aIGs  226 (346)
T PRK07589        207 ATILTDD---MVEPGMHINAVGG  226 (346)
T ss_pred             CceecHH---HcCCCcEEEecCC
Confidence            2455554   4589999887764

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.84  E-value=4.5e-05  Score=64.76  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=73.1

Q ss_pred             EEEEcc-cHHHHHHHHHHccCC----CeEEEEcCCCCChhH-HHh----------hCCeecCCHHhhcccCCEEEEcCCC
Q 027408           39 VGTVGC-GRIGKLLLQRLKPFN----CNLLYHDRVKMDPQL-EKE----------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        39 igIiG~-G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~~-~~~----------~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      |+|||. |.+|..+|..+...|    .+|..+|.++...+. ..+          ..+...+++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            689999 999999999998777    689999987632221 110          1223345667889999999996521


Q ss_pred             --Ch---------hhhhcccHH---HHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCccEEE-eeCC
Q 027408          103 --TE---------KTRGMFDKD---RIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS-GDVW  155 (223)
Q Consensus       103 --~~---------~t~~~i~~~---~~~~mk~ga~ivn~srg~~vd~~al~~~--L~~g~i~~a~-lDv~  155 (223)
                        .+         .+..+ -++   .+....|.++++|++..-=+-...+.+.  +...++.|.+ +|..
T Consensus        81 ~~~~g~~r~~~~~~n~~i-~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~  149 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPI-VKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI  149 (263)
T ss_pred             CCCcCCCHHHHHHHHHHH-HHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence              11         01111 122   2333458899999964332333344444  4567888888 7753

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.81  E-value=9.1e-05  Score=64.92  Aligned_cols=89  Identities=21%  Similarity=0.283  Sum_probs=68.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHHH-----hhC--CeecCCHHhhcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK-----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~-----~~g--~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .-++++|||.|..++..++.++. ++. +|.+|+|++...+.+.     +.+  +....+.+++++.||+|+.++|.++ 
T Consensus       129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-  207 (330)
T COG2423         129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-  207 (330)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC-
Confidence            45689999999999999999964 565 5999999874433222     223  3567899999999999999999654 


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        .++..+.   ++||+.|..++.
T Consensus       208 --Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 --PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             --CeecHhh---cCCCcEEEecCC
Confidence              5666655   569999999985

>PLN02477 glutamate dehydrogenase

Probab=97.81  E-value=0.0012  Score=59.68  Aligned_cols=109  Identities=22%  Similarity=0.334  Sum_probs=74.1

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHH-H---hh-------CCeecCCHHhhc-
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE-K---ET-------GAKFEEDLDTML-   90 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~-~---~~-------g~~~~~~l~e~l-   90 (223)
                      +.+|.|++|+|.|+|++|+.+|+.|...|.+|+ +.|.+       ....+.. +   +.       +.+.. +.++++ 
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~  279 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILV  279 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCcccee
Confidence            457999999999999999999999999999988 44543       1111111 1   00       11222 334443 


Q ss_pred             ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      .+||+++-|.-     .+.|+++....++ =.+|+-.+.+.+ ..+ -.+.|.+..|.
T Consensus       280 ~~~DvliP~Al-----~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~  329 (410)
T PLN02477        280 EPCDVLIPAAL-----GGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV  329 (410)
T ss_pred             ccccEEeeccc-----cccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence            57999988864     5678888888875 346667777776 444 45778887776

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=97.79  E-value=0.00019  Score=56.48  Aligned_cols=94  Identities=17%  Similarity=0.335  Sum_probs=68.0

Q ss_pred             CCCEEEEEc--ccHHHHHHHHHHccCCCeEEEEcCCCC--Ch--hHH-------HhhC--CeecCCHHhhcccCCEEEEc
Q 027408           35 EGKTVGTVG--CGRIGKLLLQRLKPFNCNLLYHDRVKM--DP--QLE-------KETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        35 ~g~~igIiG--~G~iG~~iA~~l~~~G~~V~~~d~~~~--~~--~~~-------~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .|+||++||  .+++.++++..+..||+++.++.|...  ..  +..       .+.|  +...+++++.++++|+|+..
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            488999999  389999999999999999999998651  22  111       1223  35568999999999999876


Q ss_pred             CCC----Chh-------hhhcccHHHHhcCCCCcEEEEcC
Q 027408          100 TPL----TEK-------TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       100 ~p~----~~~-------t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .--    .+.       ....++++.++.+|+++++..+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            553    111       11457888888888888888764

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.79  E-value=0.00014  Score=62.65  Aligned_cols=80  Identities=16%  Similarity=0.294  Sum_probs=64.2

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      +.++.||++.|||- ..+|+.+|..|...    ++.|+++....              .++.+.+++||+|+.+++    
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvG----  213 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALG----  213 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccC----
Confidence            56899999999997 56799999999876    68888886432              368888999999999998    


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ..+++..+.   +|+|+++||++-..
T Consensus       214 kp~~i~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        214 QPEFVKADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             CcCccCHHH---cCCCCEEEEecCcc
Confidence            234566544   68999999998654

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.77  E-value=0.00031  Score=52.42  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=66.4

Q ss_pred             CEEEEEc----ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVG----CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG----~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      |+|+|||    -+..|..+.+.++..|++|+.+++....     -.|...+.+++|.-...|++++++|  ++...-+-+
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~-----i~G~~~y~sl~e~p~~iDlavv~~~--~~~~~~~v~   73 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE-----ILGIKCYPSLAEIPEPIDLAVVCVP--PDKVPEIVD   73 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE-----ETTEE-BSSGGGCSST-SEEEE-S---HHHHHHHHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE-----ECcEEeeccccCCCCCCCEEEEEcC--HHHHHHHHH
Confidence            6899999    7899999999999999999999986521     2366667899985478999999999  333222223


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccE
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~  149 (223)
                      +. ..+..+.+++..+    ..++++.+.+++..+.-
T Consensus        74 ~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~v  105 (116)
T PF13380_consen   74 EA-AALGVKAVWLQPG----AESEELIEAAREAGIRV  105 (116)
T ss_dssp             HH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-EE
T ss_pred             HH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCEE
Confidence            33 3335667888777    67788888888877763

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.77  E-value=0.00017  Score=65.59  Aligned_cols=110  Identities=17%  Similarity=0.313  Sum_probs=72.2

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEE-cCC-------CCChhHHHh-----------h----CCeecCCHH
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRV-------KMDPQLEKE-----------T----GAKFEEDLD   87 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~-d~~-------~~~~~~~~~-----------~----g~~~~~~l~   87 (223)
                      +.+|.|++|+|.|+|++|+.+|+.|..+|++|+++ |.+       ....+...+           +    +.... +.+
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~  305 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGG  305 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCc
Confidence            45789999999999999999999999999998876 521       111111000           0    11222 344


Q ss_pred             hhcc-cCCEEEEcCCCChhhhhcccHHHHhcCC-CCc-EEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           88 TMLP-KCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        88 e~l~-~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga-~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +++. +||+++-|..     .+.|+.+....++ +++ +|+-.+.+++ +.+ -.+.|.+..|.
T Consensus       306 ~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~  362 (445)
T PRK09414        306 SPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL  362 (445)
T ss_pred             cccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence            5543 6999999987     5567777666663 233 5566666666 444 55677777766

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.77  E-value=0.00018  Score=62.55  Aligned_cols=112  Identities=12%  Similarity=0.072  Sum_probs=72.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hhCCeec-----------CCHHhhcccCCEEEEcCCCCh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE-----------EDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~-----------~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ++|+|+|.|.||..+|-.|...|.+|.+++|.....+..+ +.|+...           ....+.....|+|++|+...+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~   82 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD   82 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence            5799999999999999999999999999998642222121 1122110           011122457899999997432


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~  151 (223)
                       +...+ +.....+.+++.+|-. ..++-.++.+.+.+.+.++.++.
T Consensus        83 -~~~al-~~l~~~l~~~t~vv~l-QNGv~~~e~l~~~~~~~~v~~g~  126 (305)
T PRK05708         83 -AEPAV-ASLAHRLAPGAELLLL-QNGLGSQDAVAARVPHARCIFAS  126 (305)
T ss_pred             -HHHHH-HHHHhhCCCCCEEEEE-eCCCCCHHHHHHhCCCCcEEEEE
Confidence             22222 4555667788877766 44455667777777666665443

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.77  E-value=0.00014  Score=62.80  Aligned_cols=81  Identities=16%  Similarity=0.271  Sum_probs=64.8

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCCh
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      .+.++.||++.|||- ..+|+.+|..|...    ++.|..+....              .++++.+++||+|+.++.   
T Consensus       155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvG---  217 (297)
T PRK14168        155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAG---  217 (297)
T ss_pred             hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecC---
Confidence            356899999999996 67899999999876    68888876432              368888999999999986   


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                       ..+++..+.   +|+|+++||++...
T Consensus       218 -kp~~i~~~~---ik~gavVIDvGin~  240 (297)
T PRK14168        218 -VPNLVKPEW---IKPGATVIDVGVNR  240 (297)
T ss_pred             -CcCccCHHH---cCCCCEEEecCCCc
Confidence             234566555   57999999998655

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.76  E-value=0.00016  Score=61.02  Aligned_cols=110  Identities=22%  Similarity=0.296  Sum_probs=75.0

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEE--------cCCCCChhH-H---HhhCC--eecC----------CHH-
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQL-E---KETGA--KFEE----------DLD-   87 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~--------d~~~~~~~~-~---~~~g~--~~~~----------~l~-   87 (223)
                      ++.|+++.|-|+|.+|+.+|+.|...|++|+++        |+.....+. .   .+.+.  ..+.          +-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            589999999999999999999999999997665        554322221 1   12222  1111          222 


Q ss_pred             hhc-ccCCEEEEcCCCChhhhhcccHHHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           88 TML-PKCDIVVVNTPLTEKTRGMFDKDRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        88 e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~-~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +++ .+||+++-|.-     .+.|+.+... .+++++.+|--+....+..++.. .|.+..|.
T Consensus       109 ~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  109 EILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL  165 (244)
T ss_dssp             HGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E
T ss_pred             ccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE
Confidence            555 57999999965     5678888888 88877766666665556666665 88887776

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.76  E-value=0.00011  Score=62.55  Aligned_cols=114  Identities=26%  Similarity=0.307  Sum_probs=82.1

Q ss_pred             ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.+|+|+++.|||-++ +|+.++..|...++.|.++....              .++.+.+++||+|+.++-    -.++
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG----~p~~  212 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVG----KPHF  212 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecC----Cccc
Confidence            4589999999999876 59999999999999999998642              367888999999999986    2345


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~  186 (223)
                      +..   ..+|+|+++|+++--.+-+          ++   ..=||-.++.        ....-.+||--||.-.=+.
T Consensus       213 i~~---d~vk~gavVIDVGinrv~~----------~k---l~GDVdf~~v--------~~~a~~iTPVPGGVGPmTv  265 (283)
T COG0190         213 IKA---DMVKPGAVVIDVGINRVND----------GK---LVGDVDFDSV--------KEKASAITPVPGGVGPMTV  265 (283)
T ss_pred             ccc---ccccCCCEEEecCCccccC----------Cc---eEeeccHHHH--------HHhhcccCCCCCccCHHHH
Confidence            543   3468999999998766443          33   3446644331        1122357887777654443

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.75  E-value=0.00011  Score=53.83  Aligned_cols=81  Identities=20%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHccCCCeEEEEcCCCCChhHHH---hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCc
Q 027408           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (223)
Q Consensus        46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga  122 (223)
                      .-+..+++.|+..|++|.+|||.-.......   ..++...+++++.++.+|+|+++++- ++...+-..+....|+++.
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~~~~~~~~~~~~   95 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRELDWEEIAKLMRKPP   95 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSE
T ss_pred             CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhccCHHHHHHhcCCCC
Confidence            4567899999999999999999753333322   24677778999999999999999983 3333333455667788889


Q ss_pred             EEEEc
Q 027408          123 LIVNN  127 (223)
Q Consensus       123 ~ivn~  127 (223)
                      +|+++
T Consensus        96 ~iiD~  100 (106)
T PF03720_consen   96 VIIDG  100 (106)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99987

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.75  E-value=0.0001  Score=55.18  Aligned_cols=88  Identities=18%  Similarity=0.275  Sum_probs=51.9

Q ss_pred             EEEEEc-ccHHHHHHHHHHccC-CCe-EEEEcCCC-CChhHHHhhC----C---eecCCHHhhcccCCEEEEcCCCChhh
Q 027408           38 TVGTVG-CGRIGKLLLQRLKPF-NCN-LLYHDRVK-MDPQLEKETG----A---KFEEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        38 ~igIiG-~G~iG~~iA~~l~~~-G~~-V~~~d~~~-~~~~~~~~~g----~---~~~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      ||+||| .|.+|+.+.+.|... .++ +.+++++. .........+    .   ...+...+.+.++|+|++|+|.....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            699999 999999999999764 456 44556544 2122222211    1   11111223458999999999922211


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                        -+..   +.+++|..+|+.|..
T Consensus        81 --~~~~---~~~~~g~~ViD~s~~   99 (121)
T PF01118_consen   81 --ELAP---KLLKAGIKVIDLSGD   99 (121)
T ss_dssp             --HHHH---HHHHTTSEEEESSST
T ss_pred             --HHHH---HHhhCCcEEEeCCHH
Confidence              1112   225788899998753

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.73  E-value=6.1e-05  Score=64.78  Aligned_cols=71  Identities=14%  Similarity=0.099  Sum_probs=51.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC-ChhHHHhhC----CeecC---CHHhhcccCCEEEEcCCCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM-DPQLEKETG----AKFEE---DLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~-~~~~~~~~g----~~~~~---~l~e~l~~aDvVv~~~p~~  103 (223)
                      .+.++++.|||.|.+|++++..|...|+ +|.+++|+.. ..++++.++    +....   ++.+.+.++|+||.|+|..
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            4689999999999999999999999998 5999999853 223333322    11121   2335567899999999843

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=97.71  E-value=0.00024  Score=62.71  Aligned_cols=111  Identities=14%  Similarity=0.145  Sum_probs=76.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--CCeEE-EEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCC-hhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT-EKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--G~~V~-~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~-~~t~~~i~  111 (223)
                      .+|||||+ .+|+..++.++..  ++++. ++|++. +..+.++++|+..++++++++.+.|++++++|.+ |...|.  
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~--   80 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS--   80 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence            58999999 6899999988765  46754 778865 3445677788877889999999899999998732 222222  


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEE
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a  150 (223)
                      +-..+.++.|..++.=--=..-+.++|+++.++..+...
T Consensus        81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            444555667765544322224456667787777766644

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00022  Score=61.60  Aligned_cols=80  Identities=23%  Similarity=0.302  Sum_probs=63.7

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      +.++.||++.|||- ..+|+.+|..|...    ++.|..+....              .++++.+++||+|+.++.    
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvG----  213 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAG----  213 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----
Confidence            45799999999997 56799999999765    78898876432              367888999999999886    


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      -.+++..+.   +|+|+++||++-..
T Consensus       214 kp~~i~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        214 VPELIDGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             CcCccCHHH---cCCCCEEEEccccc
Confidence            234666544   68999999998655

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.68  E-value=0.00012  Score=63.26  Aligned_cols=38  Identities=13%  Similarity=0.222  Sum_probs=34.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~   69 (223)
                      ..+.++++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus       122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            357899999999999999999999999996 99999975

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.63  E-value=0.00019  Score=64.89  Aligned_cols=109  Identities=13%  Similarity=0.113  Sum_probs=64.9

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhh--------
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR--------  107 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~--------  107 (223)
                      .++|.|||+|.+|.++|+.|+..|.+|.++|++..........+-......+.+.+++|+|+.+.+..+...        
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            468999999999999999999999999999986532211110100111233444578999888765433211        


Q ss_pred             --hcccHHHH--hc--CCCC-cEEEEcCCCCccCHHHHHHHHHh
Q 027408          108 --GMFDKDRI--AK--MKKG-VLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       108 --~~i~~~~~--~~--mk~g-a~ivn~srg~~vd~~al~~~L~~  144 (223)
                        .++.+..+  ..  +.+. .+-|--+.|+.-..+-|...|+.
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~  126 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR  126 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence              12222222  11  1122 34455566777666667777765

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.63  E-value=0.00036  Score=60.46  Aligned_cols=89  Identities=17%  Similarity=0.174  Sum_probs=60.8

Q ss_pred             CCEEEEEcccHHHHHHHHHHcc-CCCeEE-EEcCCCCCh--hHHHhhCCee-cCCHHhhcc-----cCCEEEEcCCCChh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP--QLEKETGAKF-EEDLDTMLP-----KCDIVVVNTPLTEK  105 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~--~~~~~~g~~~-~~~l~e~l~-----~aDvVv~~~p~~~~  105 (223)
                      ..+|||||.|.||+.++..+.. -++++. ++|+++...  ..++++|+.. +++.+++++     +.|+|+.++|..  
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~--   81 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG--   81 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence            4689999999999997777754 466754 677765322  4566778764 468999984     589999999832  


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .+   -+-.....+.|..+|+-+.
T Consensus        82 ~H---~e~a~~a~eaGk~VID~sP  102 (302)
T PRK08300         82 AH---VRHAAKLREAGIRAIDLTP  102 (302)
T ss_pred             HH---HHHHHHHHHcCCeEEECCc
Confidence            21   1223334566778877763

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.63  E-value=0.00016  Score=56.85  Aligned_cols=70  Identities=13%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC-Cee-cCCH-HhhcccCCEEEEcCCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-AKF-EEDL-DTMLPKCDIVVVNTPL  102 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g-~~~-~~~l-~e~l~~aDvVv~~~p~  102 (223)
                      ..+|+|++|.|||.|.+|...++.|...|++|.++++.. ..+... ++ +.. ...+ ++-+.++|+|+.++..
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~-~~~l~~-l~~i~~~~~~~~~~dl~~a~lViaaT~d   80 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI-CKEMKE-LPYITWKQKTFSNDDIKDAHLIYAATNQ   80 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc-CHHHHh-ccCcEEEecccChhcCCCceEEEECCCC
Confidence            357999999999999999999999999999999998643 233222 22 111 0111 2236789999888763

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.63  E-value=0.00023  Score=62.83  Aligned_cols=66  Identities=27%  Similarity=0.337  Sum_probs=44.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEEE-EcCCCCChh-HHHhh------------------CCeecCCHHhhcccCCE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQ-LEKET------------------GAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~~-~d~~~~~~~-~~~~~------------------g~~~~~~l~e~l~~aDv   95 (223)
                      .+|||+|+|+||+.+++.+... ++++.+ +|+++.... .++..                  ++....++++++.++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            4799999999999999988754 788664 443321111 11111                  22333567888888999


Q ss_pred             EEEcCCC
Q 027408           96 VVVNTPL  102 (223)
Q Consensus        96 Vv~~~p~  102 (223)
                      |+.|+|.
T Consensus        82 VIdaT~~   88 (341)
T PRK04207         82 VVDATPG   88 (341)
T ss_pred             EEECCCc
Confidence            9999983

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.62  E-value=0.00047  Score=63.17  Aligned_cols=112  Identities=18%  Similarity=0.191  Sum_probs=70.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhhCCeec--CCHHhhcccCCEEEEcCCCChh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      -+.+++|+|+|+|..|.++|+.|+..|++|.++|.++...     +..+..|+...  ....+.+.++|+|+.. |.-+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~   89 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI   89 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence            3678999999999999999999999999999999764211     12334465432  2234556789999887 43322


Q ss_pred             hhhc-----------ccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          106 TRGM-----------FDK-DRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       106 t~~~-----------i~~-~~~-~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      +...           +.+ +.+ ...+...+-|--+.|+.-..+-+...|+..
T Consensus        90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~  142 (458)
T PRK01710         90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE  142 (458)
T ss_pred             CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence            2211           111 122 222223344656678777777677777653

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.60  E-value=0.00028  Score=61.80  Aligned_cols=116  Identities=16%  Similarity=0.257  Sum_probs=69.0

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh---h----CCeecCCHHhhcccCCEEEEcC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---T----GAKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~----g~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      +..+||+|||.|.+|..+|..+...|. +|..+|+++....     ....   .    .+....+. +.+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            455799999999999999999887784 8999998764221     1111   1    12223566 4678999999976


Q ss_pred             CCC--h--------------hhhhcccHHH---HhcCCCCcEEEEcCCCCccCHHHHHHHHH--hCCccEEE
Q 027408          101 PLT--E--------------KTRGMFDKDR---IAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS  151 (223)
Q Consensus       101 p~~--~--------------~t~~~i~~~~---~~~mk~ga~ivn~srg~~vd~~al~~~L~--~g~i~~a~  151 (223)
                      -..  +              .+..++ .+.   +....|.+.+++++...=+-...+.+...  ..++.|.+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            321  1              111111 222   22334677899988544333444444322  24566655

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=97.59  E-value=0.00034  Score=60.89  Aligned_cols=98  Identities=16%  Similarity=0.150  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHcc-------CCCeEEEEcCCCC--C--hhHHHh-----------------hCCeecC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKP-------FNCNLLYHDRVKM--D--PQLEKE-----------------TGAKFEE   84 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~-------~G~~V~~~d~~~~--~--~~~~~~-----------------~g~~~~~   84 (223)
                      +-.-++|+|||.|++|+++|+.+..       |..+|.-|-+...  .  ..+.+-                 .++..++
T Consensus        18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~   97 (372)
T KOG2711|consen   18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP   97 (372)
T ss_pred             hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence            3455789999999999999998853       2234554443221  1  111111                 1244568


Q ss_pred             CHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408           85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus        85 ~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      ++.+.+.+||+++..+|  .+...-+.+++..+.|+++..|+...|--
T Consensus        98 dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e  143 (372)
T KOG2711|consen   98 DLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVE  143 (372)
T ss_pred             hHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence            99999999999999999  33333356888899999999999987743

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=97.58  E-value=0.0002  Score=62.52  Aligned_cols=68  Identities=26%  Similarity=0.340  Sum_probs=51.3

Q ss_pred             CEEEEEcccHHHH-HHHHHHccCC--Ce-EEEEcCCCC-ChhHHHhhCCe-ecCCHHhhccc--CCEEEEcCCCCh
Q 027408           37 KTVGTVGCGRIGK-LLLQRLKPFN--CN-LLYHDRVKM-DPQLEKETGAK-FEEDLDTMLPK--CDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~G~iG~-~iA~~l~~~G--~~-V~~~d~~~~-~~~~~~~~g~~-~~~~l~e~l~~--aDvVv~~~p~~~  104 (223)
                      .+|||||+|.++. ..+..++..+  +. +.++|+++. ....++++++. .+++++++++.  .|+|++++|..-
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~   79 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNAL   79 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChh
Confidence            5899999997764 5788887765  35 567788763 34566777874 67899999975  699999999443

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.58  E-value=0.00054  Score=58.89  Aligned_cols=93  Identities=18%  Similarity=0.269  Sum_probs=60.5

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC-ChhHHHhhCCe----ecCCHHhh--cccCCEEEEcCCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM-DPQLEKETGAK----FEEDLDTM--LPKCDIVVVNTPLT  103 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~-~~~~~~~~g~~----~~~~l~e~--l~~aDvVv~~~p~~  103 (223)
                      ....|+++.|+|.|..+++++..|+..|. +|.+++|+.. ..++++.++-.    ....+.++  ..++|+||.++|..
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            45679999999999999999999999995 7999999763 33333333310    11122222  22699999999954


Q ss_pred             hhhh---hcccHHHHhcCCCCcEEEEc
Q 027408          104 EKTR---GMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       104 ~~t~---~~i~~~~~~~mk~ga~ivn~  127 (223)
                      -.-.   ..++   ...++++.++.++
T Consensus       202 m~~~~~~~~~~---~~~l~~~~~v~D~  225 (283)
T COG0169         202 MAGPEGDSPVP---AELLPKGAIVYDV  225 (283)
T ss_pred             CCCCCCCCCCc---HHhcCcCCEEEEe
Confidence            3322   1222   4556666666655

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.56  E-value=0.0014  Score=57.20  Aligned_cols=95  Identities=8%  Similarity=-0.002  Sum_probs=69.9

Q ss_pred             HHHHHHHHHccCCCeEEEEcCCCCCh-------hHH-----------Hhh-------------CCeecCC--HHhhcccC
Q 027408           47 IGKLLLQRLKPFNCNLLYHDRVKMDP-------QLE-----------KET-------------GAKFEED--LDTMLPKC   93 (223)
Q Consensus        47 iG~~iA~~l~~~G~~V~~~d~~~~~~-------~~~-----------~~~-------------g~~~~~~--l~e~l~~a   93 (223)
                      ||..||..+...|++|..||+++...       +..           ...             .+....+  +.+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            68899999999999999999987321       000           001             1222322  55788999


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                      |+|+.++|.+.+.+..+..+..+.++++++|.+  .-+.+....|.+.+.
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS--ntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAS--TTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE--ccccCCHHHHHhhcC
Confidence            999999999999998888888899999999944  445566677777664

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.56  E-value=0.00014  Score=60.47  Aligned_cols=69  Identities=23%  Similarity=0.313  Sum_probs=49.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhhCCee-------cCCHHhh-cccCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKF-------EEDLDTM-LPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~-------~~~l~e~-l~~aDvVv~~~p~~~~  105 (223)
                      |++.|+|+|.+|..+|+.|...|++|+.+|+++...+.  ..+.....       .+.|+++ +.++|+++.++..+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~   79 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV   79 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence            58999999999999999999999999999987643332  11233221       1234444 5789999998885544

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.56  E-value=0.00073  Score=57.65  Aligned_cols=105  Identities=18%  Similarity=0.231  Sum_probs=63.3

Q ss_pred             CEEEEEc-ccHHHHHHHHHHcc-CCCeEE-EEcCCCC-C--hhHHHh-----hCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVKM-D--PQLEKE-----TGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~-~G~~V~-~~d~~~~-~--~~~~~~-----~g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .+|+|+| +|+||+.+++.+.. -++++. ++|+... .  ......     .++..+++++++...+|+|+.++|  |.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~--p~   79 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT--PE   79 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC--hH
Confidence            4899999 69999999999875 578854 6775321 1  111111     345556789888667999999997  33


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCCccC-HHHHHHHHHhCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMD-TQAVVDACSSGH  146 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~~vd-~~al~~~L~~g~  146 (223)
                      ..   .+.....++.|.-+|....|--.+ .+.|.++.++..
T Consensus        80 ~~---~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g  118 (266)
T TIGR00036        80 GV---LNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAG  118 (266)
T ss_pred             HH---HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCC
Confidence            32   233444455665566544453222 233444444433

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.54  E-value=0.0015  Score=59.51  Aligned_cols=111  Identities=19%  Similarity=0.257  Sum_probs=72.9

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHH--------------Hhh-----CCeec
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE--------------KET-----GAKFE   83 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~--------------~~~-----g~~~~   83 (223)
                      +.+|.|+||.|-|+|++|+..|+.|...|.+|+ +.|.+       ....+..              ..+     +.++.
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            457999999999999999999999999999988 55544       1111111              000     22333


Q ss_pred             CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        84 ~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~m-k~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                       +.++++ -.||+.+-|.-     .+.|+.+..+.+ +.++.+|--+.......+ -.+.|.+..|.
T Consensus       312 -~~~~~~~~~cDI~iPcA~-----~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~e-A~~~L~~~GI~  371 (454)
T PTZ00079        312 -PGKKPWEVPCDIAFPCAT-----QNEINLEDAKLLIKNGCKLVAEGANMPTTIE-ATHLFKKNGVI  371 (454)
T ss_pred             -CCcCcccCCccEEEeccc-----cccCCHHHHHHHHHcCCeEEEecCCCCCCHH-HHHHHHHCCcE
Confidence             233333 46999888764     677888877766 556666665555555554 44667776665

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.54  E-value=0.00053  Score=59.59  Aligned_cols=65  Identities=20%  Similarity=0.211  Sum_probs=46.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHhh-------C--Ce-ecCCHHhhcccCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-------G--AK-FEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~~-------g--~~-~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ++|+|||.|.+|+.+|..|...|  .+|.++|++....+ .+.++       +  .. ...+.+ .+++||+|++++..
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~   78 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS-DCKDADIVVITAGA   78 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCC
Confidence            48999999999999999998888  47999999763222 22211       1  11 123344 47899999999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.53  E-value=0.0016  Score=56.69  Aligned_cols=141  Identities=12%  Similarity=0.106  Sum_probs=83.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee------------cCCHHhhcccCCEEEEcCCCCh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF------------EEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~------------~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ++|.|+|.|.||.-++.+|...|..|..+.|.+. .+..++.|...            .....+.+..+|+|++++....
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence            5899999999999999999999988888888654 33333334321            1122345568999999997433


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCC-ccCCCCeEEccCCCCCc
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTT  182 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~-l~~~~nv~~tPH~a~~t  182 (223)
                      ... . -+.....+++.+.|+-. .-++=.++.+.+.....++. .++..+...-..+.+- ......+.+.+..++.+
T Consensus        80 ~~~-a-l~~l~~~~~~~t~vl~l-qNG~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          80 LEE-A-LPSLAPLLGPNTVVLFL-QNGLGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             HHH-H-HHHhhhcCCCCcEEEEE-eCCCcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            322 2 25666667777776654 33444555666666666554 3333332221111111 12234566666655544

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.53  E-value=0.00024  Score=58.13  Aligned_cols=87  Identities=20%  Similarity=0.203  Sum_probs=58.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h-HHH---hhC--C--e--
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q-LEK---ETG--A--K--   81 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~-~~~---~~g--~--~--   81 (223)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++.++|+.....                   + .++   +.+  +  .  
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 699999762100                   0 001   111  1  0  


Q ss_pred             --ec--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCC
Q 027408           82 --FE--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK  119 (223)
Q Consensus        82 --~~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk  119 (223)
                        ..  .+++++++++|+|+.|+. +..++..+++...+.-+
T Consensus        97 ~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i  137 (202)
T TIGR02356        97 KERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT  137 (202)
T ss_pred             hhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence              11  234567888999887764 55666666665555433

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.53  E-value=0.00052  Score=59.10  Aligned_cols=87  Identities=21%  Similarity=0.273  Sum_probs=58.0

Q ss_pred             CEEEEEcccHHHHHHHHHHc-cCCCeEE-EEcCCCCC--hhHHHhhCCe-ecCCHHhhcc--cCCEEEEcCCCChhhhhc
Q 027408           37 KTVGTVGCGRIGKLLLQRLK-PFNCNLL-YHDRVKMD--PQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~-~~G~~V~-~~d~~~~~--~~~~~~~g~~-~~~~l~e~l~--~aDvVv~~~p~~~~t~~~  109 (223)
                      .+|||||.|.||+.++..+. .-++++. ++|+++.+  .+.++++|+. .+.+.++++.  +.|+|++++|.....   
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~---   78 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA---   78 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH---
Confidence            47999999999998876665 3467755 67776643  2456667875 3457888885  589999999933221   


Q ss_pred             ccHHHHhcCCCCcEEEEcC
Q 027408          110 FDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~s  128 (223)
                        +-....++.|..+++-+
T Consensus        79 --e~a~~al~aGk~VIdek   95 (285)
T TIGR03215        79 --RHARLLAELGKIVIDLT   95 (285)
T ss_pred             --HHHHHHHHcCCEEEECC
Confidence              23334455666665544

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=97.51  E-value=0.00098  Score=58.00  Aligned_cols=66  Identities=23%  Similarity=0.312  Sum_probs=52.1

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|++|++||-   +++.++++..+..+|+++.++.|..-.++...  .....++++++++++|+|....
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~  221 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLR  221 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECC
Confidence            489999999996   69999999999999999999998642221111  2355689999999999998754

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=97.50  E-value=0.00024  Score=64.48  Aligned_cols=107  Identities=14%  Similarity=0.054  Sum_probs=67.4

Q ss_pred             CEEEEEcccHHHHHHHH---HH---ccCCCeEEEEcCCCCChhHHH--------hh----CCeecCCHHhhcccCCEEEE
Q 027408           37 KTVGTVGCGRIGKLLLQ---RL---KPFNCNLLYHDRVKMDPQLEK--------ET----GAKFEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~---~l---~~~G~~V~~~d~~~~~~~~~~--------~~----g~~~~~~l~e~l~~aDvVv~   98 (223)
                      .+|+|||.|.+|.+.+.   .+   ...|.+|..||+++...+...        ..    .+...+++++.+++||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            47999999999998655   22   334679999999763222111        11    12345688899999999999


Q ss_pred             cCCCCh--h-hh--------h-------------c--------ccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH
Q 027408           99 NTPLTE--K-TR--------G-------------M--------FDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus        99 ~~p~~~--~-t~--------~-------------~--------i~~~~~~~mk---~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                      ++|...  . .+        +             +        +-.+..+.++   |.++++|.+..--+-..++.+...
T Consensus        81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~  160 (423)
T cd05297          81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP  160 (423)
T ss_pred             eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence            998310  0 00        0             0        1123333333   689999998877666666665544

linked to 3D####ucture

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.50  E-value=0.0003  Score=69.95  Aligned_cols=68  Identities=16%  Similarity=0.288  Sum_probs=47.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccC-CCe-------------EEEEcCCCCChh-HHHhh-CC---ee-cCCHHhh---cc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPF-NCN-------------LLYHDRVKMDPQ-LEKET-GA---KF-EEDLDTM---LP   91 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~-G~~-------------V~~~d~~~~~~~-~~~~~-g~---~~-~~~l~e~---l~   91 (223)
                      ..++|+|||+|.||+.+|+.|... +.+             |.+.|++....+ .++.+ ++   .. +.+.+++   ++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            578999999999999999999754 333             888998753222 22223 32   22 3455555   46


Q ss_pred             cCCEEEEcCCC
Q 027408           92 KCDIVVVNTPL  102 (223)
Q Consensus        92 ~aDvVv~~~p~  102 (223)
                      ++|+|++|+|.
T Consensus       648 ~~DaVIsalP~  658 (1042)
T PLN02819        648 QVDVVISLLPA  658 (1042)
T ss_pred             CCCEEEECCCc
Confidence            89999999994

>PRK10206 putative oxidoreductase; Provisional

Probab=97.50  E-value=0.00025  Score=62.61  Aligned_cols=66  Identities=20%  Similarity=0.215  Sum_probs=46.3

Q ss_pred             EEEEEcccHHHHH-HHHHH-cc-CCCeEE-EEcCCCCChhHHHhhC-CeecCCHHhhcc--cCCEEEEcCCCC
Q 027408           38 TVGTVGCGRIGKL-LLQRL-KP-FNCNLL-YHDRVKMDPQLEKETG-AKFEEDLDTMLP--KCDIVVVNTPLT  103 (223)
Q Consensus        38 ~igIiG~G~iG~~-iA~~l-~~-~G~~V~-~~d~~~~~~~~~~~~g-~~~~~~l~e~l~--~aDvVv~~~p~~  103 (223)
                      +|||||+|.+++. .+..+ .. -++++. ++|+++...+.+++++ +..+++++++++  +.|+|++++|..
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~   75 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD   75 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence            7999999998753 34544 32 357765 7888754344445554 456679999995  579999999943

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=97.50  E-value=0.0025  Score=53.69  Aligned_cols=91  Identities=14%  Similarity=0.210  Sum_probs=73.4

Q ss_pred             HHHHHHHHccCCCeEEEEcCCCC--Chh---HHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCc
Q 027408           48 GKLLLQRLKPFNCNLLYHDRVKM--DPQ---LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (223)
Q Consensus        48 G~~iA~~l~~~G~~V~~~d~~~~--~~~---~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga  122 (223)
                      |..+|-.+...|++|+..+|+..  .++   ..++.|++.+++-.+..+.+.+.++-+|....|.++. ++.++.++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            66788888889999999999863  222   2345688888888899999999999999998887764 88999999999


Q ss_pred             EEEEcCCCCccCHHHHHHHH
Q 027408          123 LIVNNARGAIMDTQAVVDAC  142 (223)
Q Consensus       123 ~ivn~srg~~vd~~al~~~L  142 (223)
                      +|.|+..-+.   -.|+..|
T Consensus       112 VicnTCT~sp---~vLy~~L  128 (340)
T COG4007         112 VICNTCTVSP---VVLYYSL  128 (340)
T ss_pred             EecccccCch---hHHHHHh
Confidence            9999987554   4566666

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=97.50  E-value=0.0012  Score=57.23  Aligned_cols=95  Identities=23%  Similarity=0.367  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCCC--ChhH---HHhhCC--eecCCHHhhcccCCEEEEcCCC
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM--DPQL---EKETGA--KFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~---~~~~g~--~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      .+.|.+|+++|-   +++.++++..++.+|++|.+..|...  +.+.   +++.|.  ...+++++.++++|+|....-.
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~  226 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ  226 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence            489999999998   49999999999999999999998642  2222   223343  3468999999999999774211


Q ss_pred             C------hh-----hhhcccHHHHhcCCCCcEEEEc
Q 027408          103 T------EK-----TRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       103 ~------~~-----t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      .      ++     ...-++++.++..++++++..+
T Consensus       227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHc  262 (301)
T TIGR00670       227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHP  262 (301)
T ss_pred             ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECC
Confidence            0      00     0123455666666666666544

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.48  E-value=0.00075  Score=60.36  Aligned_cols=107  Identities=21%  Similarity=0.385  Sum_probs=74.2

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC------------------Ch-hHHHhhCCeecCCHHhhc-c
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM------------------DP-QLEKETGAKFEEDLDTML-P   91 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~------------------~~-~~~~~~g~~~~~~l~e~l-~   91 (223)
                      ..|.|+||+|-|+|++|+..|+.+...|.+|++++-+..                  .. ......+.+..++ ++++ .
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~  281 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV  281 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc
Confidence            359999999999999999999999888999988876543                  00 1122234455533 5655 4


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~  146 (223)
                      +||+.+-|.-     .+.|+.+...+++.. +|+-.+.+++- .+|--..++.|-
T Consensus       282 ~cDIl~PcA~-----~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGI  329 (411)
T COG0334         282 DCDILIPCAL-----ENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGI  329 (411)
T ss_pred             cCcEEccccc-----ccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCC
Confidence            6998877764     678888888888865 66666666654 444444444443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.48  E-value=0.00083  Score=58.86  Aligned_cols=91  Identities=22%  Similarity=0.259  Sum_probs=67.8

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhcc---cCCEEEEcCCCCh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP---KCDIVVVNTPLTE  104 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l~---~aDvVv~~~p~~~  104 (223)
                      ..|++|.|+|.|.+|...++.++..|. +|++.++++...+.++++|+..+     .+++++..   ..|+|+-++.. +
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~-~  246 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH-P  246 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-H
Confidence            368999999999999999999999998 58889987766677777886432     13334332   27999888762 1


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .    .....++.++++..++.++.
T Consensus       247 ~----~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        247 S----SINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H----HHHHHHHHhhcCCEEEEEcc
Confidence            1    12567788899999988875

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.47  E-value=0.00075  Score=59.74  Aligned_cols=93  Identities=16%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccC-CCeEE-EEcCCC-CChhHHHhhC----C--eecC--CHHhhcccCCEEEEcCCCCh
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVK-MDPQLEKETG----A--KFEE--DLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~-G~~V~-~~d~~~-~~~~~~~~~g----~--~~~~--~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ++|+|+|. |.+|+.+++.|... +.++. ++++.. ........++    .  ..+.  +.++++.++|+|++|+|...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            47999998 99999999999877 66777 445433 1111211111    0  0122  45666678999999999332


Q ss_pred             hhhhcccHHHHhc-CCCCcEEEEcCCCCccCH
Q 027408          105 KTRGMFDKDRIAK-MKKGVLIVNNARGAIMDT  135 (223)
Q Consensus       105 ~t~~~i~~~~~~~-mk~ga~ivn~srg~~vd~  135 (223)
                      .      .+.... .+.|..+|+.|..--.+.
T Consensus        81 s------~~~~~~~~~~G~~VIDlS~~fR~~~  106 (346)
T TIGR01850        81 S------AELAPELLAAGVKVIDLSADFRLKD  106 (346)
T ss_pred             H------HHHHHHHHhCCCEEEeCChhhhcCC
Confidence            1      233332 357899999986655553

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.47  E-value=0.00058  Score=59.20  Aligned_cols=63  Identities=24%  Similarity=0.375  Sum_probs=44.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHh---h----C----CeecCCHHhhcccCCEEEEcC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE---T----G----AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~---~----g----~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      ++|+|||.|.+|..+|..+...|. +|..+|+++...+. ..+   .    +    +....+.+ .+++||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence            689999999999999999987664 99999986532211 111   0    1    11224554 478999999986

>PRK11579 putative oxidoreductase; Provisional

Probab=97.47  E-value=0.00049  Score=60.68  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=45.8

Q ss_pred             CEEEEEcccHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHHHhh-CCeecCCHHhhcc--cCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      .+|||||+|.||+. .+..++.. ++++. ++|++..  .....+ +...+++++++++  +.|+|++|+|.
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~--~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~   74 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDAT--KVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPN   74 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHH--HHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence            48999999999984 56666543 78865 6777542  222233 3455689999995  57999999994

>cd08230 glucose_DH Glucose dehydrogenase

Probab=97.46  E-value=0.0005  Score=60.48  Aligned_cols=90  Identities=13%  Similarity=0.234  Sum_probs=64.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCC---CCChhHHHhhCCeecCC----HHh--hcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV---KMDPQLEKETGAKFEED----LDT--MLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~---~~~~~~~~~~g~~~~~~----l~e--~l~~aDvVv~~~p~~~~  105 (223)
                      .|.+|.|+|.|.+|...++.++..|++|++++++   +...+.++++|+..+..    ..+  .....|+|+-++.... 
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP-  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence            6899999999999999999999999999999873   33445566777654321    111  1235799988886211 


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                          ...+.++.++++..++.++.
T Consensus       251 ----~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ----LAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             ----HHHHHHHHccCCcEEEEEec
Confidence                22567788898888877764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.45  E-value=0.00033  Score=61.75  Aligned_cols=63  Identities=22%  Similarity=0.364  Sum_probs=47.5

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-hCC-eec---CCHHhhcccCCEEEE
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGA-KFE---EDLDTMLPKCDIVVV   98 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~-~~~---~~l~e~l~~aDvVv~   98 (223)
                      +++|||||-|..|+.++...+.+|+++++.|+++..+...-. .-+ ..+   ..+.++.+.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            479999999999999999999999999999988744432111 111 112   257788899999976

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.45  E-value=0.00065  Score=60.03  Aligned_cols=94  Identities=21%  Similarity=0.283  Sum_probs=57.8

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhhC-Ce-----ecCCHHh-hcccCCEEEEcCCCChhh
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETG-AK-----FEEDLDT-MLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g-~~-----~~~~l~e-~l~~aDvVv~~~p~~~~t  106 (223)
                      ++|+|+|. |.+|+.+++.+... ++++. ++++...........+ +.     .+.++++ ...++|+|++|+|.....
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~   82 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM   82 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence            68999997 99999999999876 67764 4554332211221111 11     1223333 456799999999943221


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCCccCH
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDT  135 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~  135 (223)
                           +-....++.|..+||.|..--.+.
T Consensus        83 -----~~v~~a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         83 -----DLAPQLLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             -----HHHHHHHhCCCEEEECCcccCCCC
Confidence                 122222357899999997666654

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.45  E-value=0.0027  Score=54.34  Aligned_cols=170  Identities=12%  Similarity=0.077  Sum_probs=105.8

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccC----CC-------eEEEEcCCCC----C---hh----HHHhhCCeecCCHHh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM----D---PQ----LEKETGAKFEEDLDT   88 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~----G~-------~V~~~d~~~~----~---~~----~~~~~g~~~~~~l~e   88 (223)
                      +..|...+|.|+|.|.-|..+|+.+...    |.       +++.+|+...    .   .+    .++...-....+|.|
T Consensus        20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e   99 (279)
T cd05312          20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE   99 (279)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHH
Confidence            4578899999999999999999998765    76       6889998631    0   11    111111012358999


Q ss_pred             hcc--cCCEEEEcCCCChhhhhcccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH--hCC-ccEEEeeCCCCCCC
Q 027408           89 MLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGH-IAGYSGDVWNPQPA  160 (223)
Q Consensus        89 ~l~--~aDvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~ivn~srg~~vd~~al~~~L~--~g~-i~~a~lDv~~~ep~  160 (223)
                      +++  ++|+++=+.-    ..++++++.++.|.   +..+|.=.|.....-|..=.++.+  +|+ |.+.+...-.-+..
T Consensus       100 ~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~  175 (279)
T cd05312         100 VVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYN  175 (279)
T ss_pred             HHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeC
Confidence            999  8898876542    24789999999998   789999999887644433334443  355 44333221111110


Q ss_pred             CCCCCccCCCCeEEccCCCCC-----cHHHHHHHHHHHHHHHHHHHcCC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGT-----TIDAQLRYAAGVKDMLDRYFKGE  204 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~g~  204 (223)
                      ......-+..|+++-|=++-.     .....+.|...+++.|.++..-+
T Consensus       176 Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~  224 (279)
T cd05312         176 GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDE  224 (279)
T ss_pred             CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCcc
Confidence            011112346788998876632     22234556666777777766544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.44  E-value=0.00055  Score=50.33  Aligned_cols=85  Identities=24%  Similarity=0.319  Sum_probs=56.0

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----CCHHhh----cccCCEEEEcCCCChhhhhcc
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e~----l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      |.|+|+|.+|+.+++.|+..+.+|.++++++...+.....++..+    .+.+.+    ++++|.|+++++....+  +.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~   78 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL   78 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence            579999999999999999977799999987644455555554321    223222    46899999999854443  32


Q ss_pred             cHHHHhcCCCCcEEE
Q 027408          111 DKDRIAKMKKGVLIV  125 (223)
Q Consensus       111 ~~~~~~~mk~ga~iv  125 (223)
                      -...++.+-+...++
T Consensus        79 ~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   79 IALLARELNPDIRII   93 (116)
T ss_dssp             HHHHHHHHTTTSEEE
T ss_pred             HHHHHHHHCCCCeEE
Confidence            244555555555554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.44  E-value=0.00051  Score=62.45  Aligned_cols=69  Identities=17%  Similarity=0.195  Sum_probs=50.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-hCCee-------cCCHHhh-cccCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKF-------EEDLDTM-LPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~-------~~~l~e~-l~~aDvVv~~~p~~~~  105 (223)
                      ++|.|+|+|.+|+.+++.|...|.+|.++++++...+..+. .++..       ...++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            57999999999999999999999999999987643333322 33321       1234455 7789999999985443

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.42  E-value=0.0012  Score=56.92  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=49.8

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC----ChhHHHhhCC-----eecCCH------HhhcccCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM----DPQLEKETGA-----KFEEDL------DTMLPKCD   94 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~----~~~~~~~~g~-----~~~~~l------~e~l~~aD   94 (223)
                      +..+.++++.|+|.|..+++++..+...|. +|.+++|+..    ...+++.++.     ....++      .+.+.++|
T Consensus       119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aD  198 (288)
T PRK12749        119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD  198 (288)
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCC
Confidence            346789999999999999999999988887 6999999742    2222222211     011222      23456789


Q ss_pred             EEEEcCCC
Q 027408           95 IVVVNTPL  102 (223)
Q Consensus        95 vVv~~~p~  102 (223)
                      +||.++|.
T Consensus       199 ivINaTp~  206 (288)
T PRK12749        199 ILTNGTKV  206 (288)
T ss_pred             EEEECCCC
Confidence            99998884

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.41  E-value=0.00047  Score=56.79  Aligned_cols=91  Identities=23%  Similarity=0.266  Sum_probs=65.7

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH---hhCCee---cCCHHhhcccCCEEEEcCCCCh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKF---EEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~~g~~~---~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ..+|.|++|.|||.|.+|..=++.+...|++|+++.+.. .++...   ..++..   .-..++ +..+++|+.+++   
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~---   81 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATD---   81 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCC---
Confidence            357999999999999999999999999999999999876 333222   222111   113333 345999999998   


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                        ..-+|++.+...++-.++||+.
T Consensus        82 --d~~ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          82 --DEELNERIAKAARERRILVNVV  103 (210)
T ss_pred             --CHHHHHHHHHHHHHhCCceecc
Confidence              3345677777777777888884

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.40  E-value=0.00065  Score=62.79  Aligned_cols=111  Identities=18%  Similarity=0.229  Sum_probs=69.6

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--CCHHhhcccCCEEEEcCCCChhhh----
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR----  107 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~----  107 (223)
                      +.|++|.|+|+|.+|.+.++.|+..|++|+++|..+...+..++.|+...  ....+.++++|+|+.+..-.+...    
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~   89 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA   89 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence            57899999999999999999999999999999975432233344566443  123455678998887643222111    


Q ss_pred             ------hcccHHHHh-cC-------CC-CcEEEEcCCCCccCHHHHHHHHHh
Q 027408          108 ------GMFDKDRIA-KM-------KK-GVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       108 ------~~i~~~~~~-~m-------k~-ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                            .++.+-.+. .+       ++ ..+-|--+.|+.-...-+...|+.
T Consensus        90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence                  122222221 11       12 233455567887777767777765

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.40  E-value=0.00048  Score=60.75  Aligned_cols=84  Identities=19%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC--------------------h-hH----HHhh--CC--e
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD--------------------P-QL----EKET--GA--K   81 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~--------------------~-~~----~~~~--g~--~   81 (223)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|+....                    . +.    ..+.  ++  .
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            46999999999999999999999999998 68889885310                    0 00    0111  11  1


Q ss_pred             e------cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHh
Q 027408           82 F------EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (223)
Q Consensus        82 ~------~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (223)
                      .      ..+++++++++|+|+.++ .+.+++.+++.-..+
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~  139 (338)
T PRK12475        100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK  139 (338)
T ss_pred             EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence            1      134677888999998887 466777776655444

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.39  E-value=0.0012  Score=60.46  Aligned_cols=113  Identities=14%  Similarity=0.168  Sum_probs=70.0

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcC--CCC-h----h
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT--PLT-E----K  105 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~--p~~-~----~  105 (223)
                      ++.|++|.|+|+|..|.++|+.|+..|++|.++|............|+.....-.+-+.++|+||..-  |.+ |    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            47889999999999999999999999999999997542222233446543221123356799887643  211 2    1


Q ss_pred             hhh-------cccH-HHHhc-C-----CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          106 TRG-------MFDK-DRIAK-M-----KKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       106 t~~-------~i~~-~~~~~-m-----k~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      ...       ++.+ +.+.. +     +...+-|.-+.|+.-...-|...|+..
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~  139 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA  139 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            111       1221 22222 2     223445666788887777777778763

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=97.38  E-value=0.00061  Score=59.00  Aligned_cols=62  Identities=23%  Similarity=0.345  Sum_probs=42.8

Q ss_pred             EEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh---h----CCeecCCHHhhcccCCEEEEcCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---T----GAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~----g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      |+|||.|.||..+|..+...|. +|+.+|+++....     ....   .    .+....+.+ .+++||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence            6899999999999999886665 9999999753211     1110   0    112224554 4789999999773

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN02527 aspartate carbamoyltransferase

Probab=97.37  E-value=0.0027  Score=55.29  Aligned_cols=95  Identities=20%  Similarity=0.303  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEccc---HHHHHHHHHHccC-CCeEEEEcCCCC--ChhH---HHhhCC--eecCCHHhhcccCCEEEEcCC
Q 027408           33 DLEGKTVGTVGCG---RIGKLLLQRLKPF-NCNLLYHDRVKM--DPQL---EKETGA--KFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        33 ~l~g~~igIiG~G---~iG~~iA~~l~~~-G~~V~~~d~~~~--~~~~---~~~~g~--~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ++.|.||+++|-+   ++.++++..+..+ |++|.+..|..-  ..+.   +++.|.  ...+++++.++++|+|....-
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~  227 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI  227 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence            4899999999965   7899999998887 999999888542  2222   222233  446799999999999988432


Q ss_pred             CCh------h-h-----hhcccHHHHhcCCCCcEEEEc
Q 027408          102 LTE------K-T-----RGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       102 ~~~------~-t-----~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      ..+      . .     ...++++.++..++++++..+
T Consensus       228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc  265 (306)
T PLN02527        228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP  265 (306)
T ss_pred             chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence            100      0 0     133455555556666555544

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=97.37  E-value=0.00018  Score=53.42  Aligned_cols=86  Identities=23%  Similarity=0.358  Sum_probs=55.2

Q ss_pred             cccHHHHHHHHHHccC----CCeEE-EEcCC--CCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhcccHH
Q 027408           43 GCGRIGKLLLQRLKPF----NCNLL-YHDRV--KMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        43 G~G~iG~~iA~~l~~~----G~~V~-~~d~~--~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      |+|.||+.+++.+...    +++|. +++++  ..........+.....++++++.  ..|+|+-|++..+..     +-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence            8999999999999765    57754 66776  11111112223445679999998  899999997633222     33


Q ss_pred             HHhcCCCCcEEEEcCCCCcc
Q 027408          114 RIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~v  133 (223)
                      ..+.++.|..+|..+.+.+.
T Consensus        76 ~~~~L~~G~~VVt~nk~ala   95 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALA   95 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHH
T ss_pred             HHHHHHCCCeEEEECHHHhh
Confidence            45666789999999988877

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK06270 homoserine dehydrogenase; Provisional

Probab=97.35  E-value=0.0018  Score=57.19  Aligned_cols=112  Identities=18%  Similarity=0.262  Sum_probs=68.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccC----------CCeEE-EEcCCC-------CChhH----HHhhCC-e------ecCCHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVK-------MDPQL----EKETGA-K------FEEDLD   87 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~----------G~~V~-~~d~~~-------~~~~~----~~~~g~-~------~~~~l~   87 (223)
                      .+|+|+|+|.||+.+++.+...          +++|. ++|++.       ...+.    ....+. .      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            3799999999999999998644          46644 556532       11111    111221 1      123788


Q ss_pred             hhc--ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCcc
Q 027408           88 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  148 (223)
Q Consensus        88 e~l--~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g~i~  148 (223)
                      +++  .+.|+|+.++|....+......-....++.|..+|....+.+ ...+.|.+..++....
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            888  468999999996544322222333566778888877654443 3456777777666554

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=97.35  E-value=0.00075  Score=57.47  Aligned_cols=90  Identities=17%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeecCCH---Hh----hc--ccCCEEEEcCCCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL---DT----ML--PKCDIVVVNTPLT  103 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l---~e----~l--~~aDvVv~~~p~~  103 (223)
                      ..|.+|.|+|.|.+|...++.++.+|.+ |++.++++...+.++++|+..+-+.   .+    +.  ...|+++-++...
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~  198 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT  198 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence            3689999999999999999999999997 8888877655666777776432111   11    11  2468888776521


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      +     .....++.++++..++.++
T Consensus       199 ~-----~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       199 A-----AVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             H-----HHHHHHHHhcCCCEEEEec
Confidence            1     1245667778888777775

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=97.34  E-value=0.0015  Score=56.83  Aligned_cols=67  Identities=22%  Similarity=0.285  Sum_probs=53.4

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH----HHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL----EKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~----~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|.+|+++|- +++.++++..+..+|++|.++.|... .. +.    ++..|  +....+++++++++|+|..-
T Consensus       149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  224 (304)
T PRK00779        149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD  224 (304)
T ss_pred             CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            489999999997 89999999999999999999998642 21 22    23344  34567999999999999875

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=97.33  E-value=0.0019  Score=56.99  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-C-hhHH-------HhhC--CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQLE-------KETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~~-------~~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|.+|++||- .++.++++..+..+|++|.++.|... . .+..       +..|  +...++++++++++|+|..-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            589999999996 78999999999999999999998642 1 1221       1224  445689999999999998833


Q ss_pred             -----CC-C--hh------hhhcccHHHHhcCCCCcEEEEc
Q 027408          101 -----PL-T--EK------TRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       101 -----p~-~--~~------t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                           .. .  ++      ....++++.++.+|++++|..+
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp  271 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC  271 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC
Confidence                 11 0  00      0134556666666666665544

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=97.33  E-value=0.0017  Score=54.84  Aligned_cols=89  Identities=18%  Similarity=0.340  Sum_probs=58.9

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      -.++-|+|.|.+++.+++.++..|++|+++|+.+.   ...          +.....++.+....|          .+.+
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~---~~~----------~~~~~~~~~~~~~~~----------~~~~  156 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA---EFP----------EDLPDGVATLVTDEP----------EAEV  156 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc---ccc----------ccCCCCceEEecCCH----------HHHH
Confidence            35899999999999999999999999999997542   110          011123443332222          2222


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 027408          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i  147 (223)
                      ..+.+...+|-++++.-.|.+.|..+|.+...
T Consensus       157 ~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~  188 (246)
T TIGR02964       157 AEAPPGSYFLVLTHDHALDLELCHAALRRGDF  188 (246)
T ss_pred             hcCCCCcEEEEEeCChHHHHHHHHHHHhCCCC
Confidence            23456677777778888888888888854443

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.32  E-value=0.00079  Score=63.81  Aligned_cols=92  Identities=21%  Similarity=0.240  Sum_probs=64.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee----cCCHHhh----cccCCEEEEcCCCChhhh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EEDLDTM----LPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~l~e~----l~~aDvVv~~~p~~~~t~  107 (223)
                      ..+|.|+|+|++|+.+++.|...|.++++.|.++...+..++.|...    .++.+-+    +++||.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            45799999999999999999999999999998875555556666432    1233222    468999999999766554


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .+  -...+.+.|...++--++
T Consensus       480 ~i--~~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        480 KI--VELCQQHFPHLHILARAR  499 (601)
T ss_pred             HH--HHHHHHHCCCCeEEEEeC
Confidence            43  344455556666655444

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=97.31  E-value=0.0018  Score=57.01  Aligned_cols=96  Identities=15%  Similarity=0.164  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCC-Chh--------HHHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~~--------~~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|++|++||-+  ++.++++..+..+|++|.++.|... ..+        .++..|  +...+++++.++++|+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            5899999999975  6899999999999999999998642 211        122234  44568999999999999874


Q ss_pred             C----CC-Ch---h-----hhhcccHHHHhcC-CCCcEEEEcC
Q 027408          100 T----PL-TE---K-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (223)
Q Consensus       100 ~----p~-~~---~-----t~~~i~~~~~~~m-k~ga~ivn~s  128 (223)
                      .    .. .+   +     ....++++.++.. |++++|..+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            2    10 00   0     0223567777775 6777777664

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.31  E-value=0.0022  Score=59.14  Aligned_cols=104  Identities=13%  Similarity=0.149  Sum_probs=70.6

Q ss_pred             CCCCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----------------------CC
Q 027408           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------------GA   80 (223)
Q Consensus        33 ~l~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g~   80 (223)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+|||.-...+..+.+                      ++
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            589999999996          4578899999999999999999964222221112                      12


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHH
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  139 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~  139 (223)
                      ....++++.++++|+|++++.-.+ .+.+-.++..+.|++..+|+|. |+ ++|.+.+.
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWDE-FKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCChH-hcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            445567789999999999998332 3333223445667766678885 43 45655553

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=97.30  E-value=0.0014  Score=57.21  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEE
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~   98 (223)
                      .+.|.+|+++|-   +++.++++..+..+|+ +|.+..|....++......+...++++++++++|+|..
T Consensus       154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence            488999999997   6999999999999999 89999886422221111235556899999999999977

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=97.29  E-value=0.0013  Score=56.77  Aligned_cols=67  Identities=19%  Similarity=0.339  Sum_probs=52.3

Q ss_pred             CCCCCEEEEEc---ccHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhhC-C-eecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETG-A-KFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG---~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g-~-~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|++|+|+|   +|++.++.++.|+.||.+|.++.|.....     +.....+ . ...+..+|.++++|++.+.
T Consensus       155 ~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l  231 (316)
T COG0540         155 RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML  231 (316)
T ss_pred             CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence            48999999999   89999999999999999999999875333     2223322 2 3455666699999999764

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.29  E-value=0.00034  Score=58.95  Aligned_cols=93  Identities=22%  Similarity=0.219  Sum_probs=60.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-hH-------------------H---HhhC--C--ee-
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QL-------------------E---KETG--A--KF-   82 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~-------------------~---~~~g--~--~~-   82 (223)
                      ..|..++|+|||+|.+|..+|+.|...|. ++.++|...... ..                   .   .+.+  +  .. 
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            46999999999999999999999999887 588887643111 00                   0   0111  1  11 


Q ss_pred             ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                         .  .+.+++++++|+|+.|+- +.+++..+++...+.-   ..+|..+
T Consensus       108 ~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~---ip~v~~~  154 (245)
T PRK05690        108 NARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAK---KPLVSGA  154 (245)
T ss_pred             eccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhC---CEEEEee
Confidence               1  134567888998887774 5666666666555543   3455544

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=97.27  E-value=0.0023  Score=56.28  Aligned_cols=68  Identities=19%  Similarity=0.325  Sum_probs=52.9

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-h-------HHHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-Q-------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~-------~~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|++|++||-+  ++.++++..+..+|++|.++.|... .. +       .++..|  +...++++++++++|+|..-
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  231 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD  231 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4899999999986  8999999999999999999987642 21 1       122234  34568999999999999885


Q ss_pred             C
Q 027408          100 T  100 (223)
Q Consensus       100 ~  100 (223)
                      +
T Consensus       232 ~  232 (331)
T PRK02102        232 V  232 (331)
T ss_pred             C
Confidence            3

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.27  E-value=0.001  Score=58.10  Aligned_cols=66  Identities=21%  Similarity=0.204  Sum_probs=46.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhh--------CCee-cCCHHhhcccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--------GAKF-EEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~--------g~~~-~~~l~e~l~~aDvVv~~~p  101 (223)
                      .++||+|||.|.+|..+|..+...|.  ++..+|++....+ .+.++        .... ..+. +.+++||+|+++.-
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag   82 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAG   82 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecC
Confidence            57799999999999999999988777  7999998653221 11111        1111 1234 45789999999764

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=97.27  E-value=0.0014  Score=57.61  Aligned_cols=96  Identities=16%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCC-CCh-hH-------HHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVK-MDP-QL-------EKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~-~~~-~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|++|++||-+  ++.++++..+..+|++|.+..|.. ... +.       ++..|  +...+++++.++++|+|..-
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            4889999999974  899999999999999999998863 111 11       12334  44568999999999999885


Q ss_pred             CCCC--h------h-----hhhcccHHHHhcCC-CCcEEEEcC
Q 027408          100 TPLT--E------K-----TRGMFDKDRIAKMK-KGVLIVNNA  128 (223)
Q Consensus       100 ~p~~--~------~-----t~~~i~~~~~~~mk-~ga~ivn~s  128 (223)
                      .=..  .      +     ....++++.++.++ ++++|..+.
T Consensus       232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence            2100  0      0     12235566666664 366665553

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.27  E-value=0.0016  Score=56.89  Aligned_cols=113  Identities=15%  Similarity=0.213  Sum_probs=65.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHh----h------CCeecCCHHhhcccCCEEEEcCCC-
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE----T------GAKFEEDLDTMLPKCDIVVVNTPL-  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~----~------g~~~~~~l~e~l~~aDvVv~~~p~-  102 (223)
                      .||+|||.|.+|..+|..+...|.  ++..+|++....+ .+.+    .      .+....+.++ +++||+|+++.-. 
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence            589999999999999998876654  6999998653221 1111    1      1222245665 7899999996542 


Q ss_pred             -Ch-hhhh-cc--c----H---HHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCccEE
Q 027408          103 -TE-KTRG-MF--D----K---DRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  150 (223)
Q Consensus       103 -~~-~t~~-~i--~----~---~~~~~mk~ga~ivn~srg~~vd~~al~~~--L~~g~i~~a  150 (223)
                       .+ .++. ++  |    +   +.+....+.+++++++..-=+-...+.+.  +...++.|.
T Consensus        83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~  144 (312)
T cd05293          83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS  144 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence             11 1221 11  1    1   22333467889999984332222233333  444555555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.24  E-value=0.001  Score=62.46  Aligned_cols=88  Identities=17%  Similarity=0.240  Sum_probs=59.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----CCHHhh----cccCCEEEEcCCCChhhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e~----l~~aDvVv~~~p~~~~t~~  108 (223)
                      .++-|+|+|++|+.+|+.|+..|.+++++|.++...+..++.+....    .+.+-+    ++++|.++++++.+.++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            46889999999999999999999999999987654555555554321    222211    4689999999997666554


Q ss_pred             cccHHHHhcCCCCcEEEE
Q 027408          109 MFDKDRIAKMKKGVLIVN  126 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn  126 (223)
                      ++. .. ..+.+...++-
T Consensus       498 iv~-~~-~~~~~~~~iia  513 (558)
T PRK10669        498 IVA-SA-REKRPDIEIIA  513 (558)
T ss_pred             HHH-HH-HHHCCCCeEEE
Confidence            432 22 23344555543

>PRK04148 hypothetical protein; Provisional

Probab=97.24  E-value=0.0016  Score=49.84  Aligned_cols=70  Identities=13%  Similarity=0.124  Sum_probs=53.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-----cCCHHhhcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-----EEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-----~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      +++++.+||+| -|..+|..|+..|++|++.|.++...+.++..+...     ++.--++-+.+|+|...-|..+-
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el   90 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDL   90 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHH
Confidence            56899999999 999999999999999999999876555555555432     23334667889999888774333

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.23  E-value=0.00096  Score=58.06  Aligned_cols=65  Identities=18%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHhh-CCe--------ecCCHHhhcccCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-GAK--------FEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~~-g~~--------~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ++|+|||.|.+|..+|..+...|  .+|.++|++....+ .+.++ ...        ...+. +.+++||+|+++++.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence            47999999999999999998888  57999998753222 11111 111        11344 457899999999884

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.23  E-value=0.0016  Score=56.15  Aligned_cols=70  Identities=21%  Similarity=0.263  Sum_probs=49.3

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhh----CC---eecC--CHHhhcccCCEEEEcCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKET----GA---KFEE--DLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~----g~---~~~~--~l~e~l~~aDvVv~~~p  101 (223)
                      .+.++++.|+|.|..|++++..|...|+ +|.++||+... .+.++.+    +.   ...+  +.++.+..+|+|+.++|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence            5778999999999999999999998997 59999997522 2233322    11   1111  12345567899999988


Q ss_pred             C
Q 027408          102 L  102 (223)
Q Consensus       102 ~  102 (223)
                      .
T Consensus       204 ~  204 (283)
T PRK14027        204 M  204 (283)
T ss_pred             C
Confidence            3

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=97.23  E-value=0.0015  Score=57.11  Aligned_cols=90  Identities=14%  Similarity=0.120  Sum_probs=67.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHh-hcccCCEEEEcCCCChhhhhcccHH
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      .|.+|.|.|.|.+|...++.++..|.+|++.++++...+.++++|+..+-+..+ .-...|+++.+.... .    .-..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~----~~~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G----LVPP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H----HHHH
Confidence            588999999999999999999999999999988776677888888754322211 123468777766532 1    2356


Q ss_pred             HHhcCCCCcEEEEcCC
Q 027408          114 RIAKMKKGVLIVNNAR  129 (223)
Q Consensus       114 ~~~~mk~ga~ivn~sr  129 (223)
                      .++.++++..++.++.
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            7888999998888764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=97.22  E-value=0.01  Score=50.15  Aligned_cols=169  Identities=12%  Similarity=0.040  Sum_probs=103.4

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-----------eEEEEcCCCC----C---hhHHHh---h-C-CeecCCHH
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-----------NLLYHDRVKM----D---PQLEKE---T-G-AKFEEDLD   87 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-----------~V~~~d~~~~----~---~~~~~~---~-g-~~~~~~l~   87 (223)
                      +..|...+|.|+|.|..|..+|+.+...+.           +++.+|+...    .   ....+.   + . -....+|.
T Consensus        20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~   99 (254)
T cd00762          20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLE   99 (254)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHH
Confidence            457899999999999999999999976554           6888887631    0   011111   1 1 12235899


Q ss_pred             hhcc--cCCEEEEcCCCChhhhhcccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHHh--C-CccEEEeeCCCCCC
Q 027408           88 TMLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACSS--G-HIAGYSGDVWNPQP  159 (223)
Q Consensus        88 e~l~--~aDvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~ivn~srg~~vd~~al~~~L~~--g-~i~~a~lDv~~~ep  159 (223)
                      |+++  +.|+++=..-    ..+++.++.++.|.   +..+|.=.|.....-|..=.++.+-  | .|.+-+.-.+..+-
T Consensus       100 eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~  175 (254)
T cd00762         100 DAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL  175 (254)
T ss_pred             HHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc
Confidence            9999  8998875432    24789999999998   8899999998776444333333333  3 34433332221111


Q ss_pred             CCCCCCccCCCCeEEccCCCCCc-----HHHHHHHHHHHHHHHHHHHcC
Q 027408          160 APKDHPWRYMPNQAMTPHVSGTT-----IDAQLRYAAGVKDMLDRYFKG  203 (223)
Q Consensus       160 ~~~~~~l~~~~nv~~tPH~a~~t-----~~~~~~~~~~~~~~i~~~~~g  203 (223)
                      .......-+..|+++-|=++-..     ....+.|...+.+.|.++..-
T Consensus       176 ~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~  224 (254)
T cd00762         176 NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTE  224 (254)
T ss_pred             CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCCh
Confidence            11111122567899999766322     222345555666666665543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.22  E-value=0.00084  Score=61.80  Aligned_cols=113  Identities=17%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhhCCeecC--CHHhhcccCCEEEEcC--C-CChhh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEE--DLDTMLPKCDIVVVNT--P-LTEKT  106 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~--~l~e~l~~aDvVv~~~--p-~~~~t  106 (223)
                      .+.+++|.|+|+|..|+++|+.|...|.+|.++|++.... +.....|+....  ...+.+.++|+||..-  | .+|..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            5789999999999999999999999999999999754222 122445665432  2234567899988763  2 23322


Q ss_pred             h-------hcccHHHHhc-------C-CCC-cEEEEcCCCCccCHHHHHHHHHhC
Q 027408          107 R-------GMFDKDRIAK-------M-KKG-VLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       107 ~-------~~i~~~~~~~-------m-k~g-a~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      .       .++.+-.+..       + .+. .+-|--+.|+.-...-|...|+..
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            1       1122222221       1 122 334555567777777777777653

>PLN02342 ornithine carbamoyltransferase

Probab=97.21  E-value=0.0033  Score=55.64  Aligned_cols=95  Identities=14%  Similarity=0.115  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-C-hhH---HHhhC---CeecCCHHhhcccCCEEEEcC---
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQL---EKETG---AKFEEDLDTMLPKCDIVVVNT---  100 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~---~~~~g---~~~~~~l~e~l~~aDvVv~~~---  100 (223)
                      .+.|+||+++|- .++.++++..+..+|++|.++.|... . .+.   ++..+   +...+++++.++++|+|....   
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s  270 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS  270 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence            589999999996 57999999999999999999998642 2 111   22233   455689999999999998763   


Q ss_pred             -CCChh--------hhhcccHHHHhcCCCCcEEEEc
Q 027408          101 -PLTEK--------TRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       101 -p~~~~--------t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                       -..+.        ....++++.++.+|++++|..+
T Consensus       271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp  306 (348)
T PLN02342        271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC  306 (348)
T ss_pred             cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence             11111        1134566666666666665544

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=97.21  E-value=0.0025  Score=55.50  Aligned_cols=95  Identities=15%  Similarity=0.224  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-C-hhH-------HHhhC--CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQL-------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|.+|+++|- +++.++++..+..+|++|.++.|... . .+.       +++.|  +...+++++.++++|+|..-.
T Consensus       145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~  224 (304)
T TIGR00658       145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDV  224 (304)
T ss_pred             CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            489999999996 89999999999999999999987642 2 111       22334  345689999999999998743


Q ss_pred             --CCC-----hh-----hhhcccHHHHhcCCCCcEEEEc
Q 027408          101 --PLT-----EK-----TRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       101 --p~~-----~~-----t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                        ...     ++     ....++++.++.+|+++++..+
T Consensus       225 w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp  263 (304)
T TIGR00658       225 WVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC  263 (304)
T ss_pred             cccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence              100     00     1223566666666666666544

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=97.20  E-value=0.00085  Score=56.85  Aligned_cols=101  Identities=28%  Similarity=0.230  Sum_probs=66.0

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCCh------hHHHhhCCeecCCHHhhcccCCEEEEcCCC
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP------QLEKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~------~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      .|.+|+..+++|+|+ |.||..+|+-+...++.....-|.....      ...+..+-....+++..+.+.|+++.... 
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs-  239 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS-  239 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence            467999999999996 9999999999999988766665432111      11122333334456655555555544332 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCCccCH
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT  135 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~  135 (223)
                       ..+-..|+.+.   +|||+.|+|-++..=+|+
T Consensus       240 -~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~  268 (351)
T COG5322         240 -MPKGVEIFPQH---LKPGCLIVDGGYPKDVDT  268 (351)
T ss_pred             -cCCCceechhh---ccCCeEEEcCCcCccccc
Confidence             12234455554   689999999998775544

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.17  E-value=0.001  Score=59.62  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccC-CCeEEEEcCCCCChhH-HHhh------CCeecCCHHh-hcccCCEEEEcCCCC
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQL-EKET------GAKFEEDLDT-MLPKCDIVVVNTPLT  103 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~-~~~~------g~~~~~~l~e-~l~~aDvVv~~~p~~  103 (223)
                      -..++|+|+|. |.+|+.+.+.|... +++|..+.+.....+. ....      ....+.+++. .++++|+|++++|..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            45669999996 99999999999877 6788776654321111 1111      1111122222 247899999999932


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHH
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al  138 (223)
                            ...+....|+.|..+|+.|.....+.++.
T Consensus       116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~  144 (381)
T PLN02968        116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAE  144 (381)
T ss_pred             ------HHHHHHHHHhCCCEEEEcCchhccCCccc
Confidence                  23455555667899999997666655433

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.16  E-value=0.0011  Score=55.25  Aligned_cols=93  Identities=19%  Similarity=0.220  Sum_probs=60.8

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-------------------H-H---Hhh----CCee-
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-------------------L-E---KET----GAKF-   82 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-------------------~-~---~~~----g~~~-   82 (223)
                      ..|..++|.|+|+|.+|..+|+.|...|. ++.++|.......                   . .   ++.    .+.. 
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 5778875421000                   0 0   001    1111 


Q ss_pred             -----cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           83 -----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        83 -----~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                           ..+++++++++|+|+.|+. ++.++..+++...+.   +..+|+++
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g  143 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA  143 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence                 1234567888999888876 566666666555543   34566654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.15  E-value=0.0027  Score=59.37  Aligned_cols=70  Identities=23%  Similarity=0.278  Sum_probs=47.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCe--ecCCHHhhc-ccCCEEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAK--FEEDLDTML-PKCDIVVVNTP  101 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~--~~~~l~e~l-~~aDvVv~~~p  101 (223)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+... .+.+..++..  ...++.+.. ..+|+|+.++|
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~  448 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTS  448 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEeccc
Confidence            3578999999999999999999999999999999987422 2222233221  112222222 34677777776

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=97.14  E-value=0.002  Score=56.84  Aligned_cols=67  Identities=16%  Similarity=0.233  Sum_probs=52.5

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-h-------HHHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-Q-------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~-------~~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|.+|++||-+  ++.++++..+..+|+++.++.|..- .. +       .++..|  +...+++++.++++|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            5899999999975  7899999999999999999988642 21 1       122234  45568999999999999885

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.13  E-value=0.0063  Score=52.71  Aligned_cols=107  Identities=13%  Similarity=0.181  Sum_probs=75.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhh-------
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR-------  107 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~-------  107 (223)
                      .|++++|||-=.--..+++.|.+.|++|.++.-...  + ....|+...++.+++++++|+|+.-+|.+.+..       
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~--~-~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~   77 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL--D-HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS   77 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc--c-cccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence            478999999999999999999999999987664321  1 122366666678899999999998888543211       


Q ss_pred             ---hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccE
Q 027408          108 ---GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (223)
Q Consensus       108 ---~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~  149 (223)
                         --++.+.++.|++++.++ ++.+.   .. +-+.+.+.++..
T Consensus        78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~  117 (296)
T PRK08306         78 NEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL  117 (296)
T ss_pred             ccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence               113678999999998554 33322   22 345566777763

>PRK06349 homoserine dehydrogenase; Provisional

Probab=97.13  E-value=0.0016  Score=59.17  Aligned_cols=108  Identities=16%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccC----------CCeE-EEEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF----------NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~----------G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~  103 (223)
                      .+|||+|+|.||+.+++.+...          +.+| .+++++..........+....+++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            4799999999999998877432          3454 46677542211111122345578999985  579999998743


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCcc
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~  148 (223)
                      ...    ..-..+.++.|..+|....+... .-+.|.++.++....
T Consensus        84 ~~~----~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         84 EPA----RELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hHH----HHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            211    12233566778777755443222 235566666666554

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.12  E-value=0.0017  Score=61.84  Aligned_cols=89  Identities=13%  Similarity=0.178  Sum_probs=62.1

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee----cCCHHhh----cccCCEEEEcCCCChhhh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EEDLDTM----LPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~l~e~----l~~aDvVv~~~p~~~~t~  107 (223)
                      ..+|-|+|+|++|+.+++.|.+.|.++++.|.++...+..++.|...    .++.+-+    ++++|.+++++++.+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            46799999999999999999999999999998775555555556532    1233322    458999999998666554


Q ss_pred             hcccHHHHhcCCCCcEEEE
Q 027408          108 GMFDKDRIAKMKKGVLIVN  126 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn  126 (223)
                      .+  ....+.+.|+..++-
T Consensus       480 ~i--~~~ar~~~p~~~iia  496 (621)
T PRK03562        480 QL--VELVKEHFPHLQIIA  496 (621)
T ss_pred             HH--HHHHHHhCCCCeEEE
Confidence            43  334444555555544

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.11  E-value=0.0011  Score=50.28  Aligned_cols=128  Identities=19%  Similarity=0.240  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE
Q 027408           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus        46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      .+.....+.|+. |++|.+++..  ..           ..+.+.++++|+++.....      -++++.++.+++=..|.
T Consensus         6 ~~~~~~~~~l~~-~~~v~~~~~~--~~-----------~~~~~~l~~~d~ii~~~~~------~~~~~~l~~~~~Lk~I~   65 (133)
T PF00389_consen    6 PLPDEEIERLEE-GFEVEFCDSP--SE-----------EELAERLKDADAIIVGSGT------PLTAEVLEAAPNLKLIS   65 (133)
T ss_dssp             S-SHHHHHHHHH-TSEEEEESSS--SH-----------HHHHHHHTTESEEEESTTS------TBSHHHHHHHTT-SEEE
T ss_pred             cCCHHHHHHHHC-CceEEEeCCC--CH-----------HHHHHHhCCCeEEEEcCCC------CcCHHHHhccceeEEEE
Confidence            334455566666 6677777721  11           1355677889999876541      36778888775444554


Q ss_pred             EcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 027408          126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       126 n~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~  205 (223)
                      ..+.|-  |.-++..+ .+..|.-+  -    -|.....+.-++         +++|.++.+++...+++||.+|++|++
T Consensus        66 ~~~~G~--d~id~~~a-~~~gI~V~--n----~~g~~~~aVAE~---------a~~T~e~~~~~~~~~~~ni~~~l~g~~  127 (133)
T PF00389_consen   66 TAGAGV--DNIDLEAA-KERGIPVT--N----VPGYNAEAVAEH---------AGYTDEARERMAEIAAENIERFLNGEP  127 (133)
T ss_dssp             ESSSSC--TTB-HHHH-HHTTSEEE--E-----TTTTHHHHHHH---------HTGBHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             Eccccc--CcccHHHH-hhCeEEEE--E----eCCcCCcchhcc---------chhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            444433  55444444 44444311  1    121100000000         189999999999999999999999987


Q ss_pred             CCCcceec
Q 027408          206 FPVQNYIV  213 (223)
Q Consensus       206 ~~~~n~~~  213 (223)
                      +  .|.||
T Consensus       128 ~--~n~VN  133 (133)
T PF00389_consen  128 P--ENVVN  133 (133)
T ss_dssp             ---TTBSS
T ss_pred             C--CCCCC
Confidence            5  55543

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=97.09  E-value=0.0043  Score=56.27  Aligned_cols=68  Identities=19%  Similarity=0.268  Sum_probs=52.3

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccC-CCeEEEEcCCCC-C-hhH---HHhhC--CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM-D-PQL---EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~-G~~V~~~d~~~~-~-~~~---~~~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|+||++||-   +++..+++..+..+ |++|.++.|..- . .+.   ++..|  +...+++++.++++|+|....
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~  316 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR  316 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            488999999997   59999999998876 999999988642 2 222   12224  445689999999999998744

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.08  E-value=0.0022  Score=54.91  Aligned_cols=64  Identities=20%  Similarity=0.222  Sum_probs=45.7

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-hHHHhhCCeecCCHHhh-cccCCEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKFEEDLDTM-LPKCDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~-l~~aDvVv~~~p~  102 (223)
                      ++++.|+|.|..+++++..|...|+ +|.+++|+.... +.++.++....   +++ ...+|+||.|+|.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~---~~~~~~~~dlvINaTp~  188 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR---PDLGGIEADILVNVTPI  188 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch---hhcccccCCEEEECCcc
Confidence            5789999999999999999999998 499999986322 23333332211   111 2458999999983

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.08  E-value=0.00075  Score=52.06  Aligned_cols=65  Identities=18%  Similarity=0.220  Sum_probs=45.1

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHh-------h--CCeecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------T--GAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~-------~--g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      +||+|||. |.+|..+|..+...+  -++..+|++....+ .+.+       .  .........+.+++||+|+++.-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            58999999 999999999997544  57999998742111 1111       1  11222355677889999999874

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK05086 malate dehydrogenase; Provisional

Probab=97.07  E-value=0.0035  Score=54.72  Aligned_cols=95  Identities=25%  Similarity=0.310  Sum_probs=57.8

Q ss_pred             CEEEEEcc-cHHHHHHHHHHc---cCCCeEEEEcCCCCCh----hHHH-h--hCCee--cCCHHhhcccCCEEEEcCCCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDP----QLEK-E--TGAKF--EEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~---~~G~~V~~~d~~~~~~----~~~~-~--~g~~~--~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ++|+|||. |.+|++++..+.   ..+.++..+|+++...    +... .  ..+..  .+++.+.++++|+|++|.-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            68999999 999999998773   3455789999865321    1111 1  01111  245567788999999987531


Q ss_pred             hh---hh-hc------ccHHHHhcC---CCCcEEEEcCCCC
Q 027408          104 EK---TR-GM------FDKDRIAKM---KKGVLIVNNARGA  131 (223)
Q Consensus       104 ~~---t~-~~------i~~~~~~~m---k~ga~ivn~srg~  131 (223)
                      ..   ++ .+      +-.+..+.|   .+.+++++++..-
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~  121 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV  121 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence            11   00 01      123333333   4678888887654

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.06  E-value=0.0045  Score=56.45  Aligned_cols=124  Identities=17%  Similarity=0.236  Sum_probs=76.9

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH----HHhhCCeec--CCHHhhcccCCEEEEcCCCChhhh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL----EKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~----~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      +.+++|.|+|+|.-|.++|+.|...|.+|+++|.++.....    ....++...  ....+...++|+|+..-- -+-+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG-i~~~~   83 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG-IPPTH   83 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC-CCCCC
Confidence            45999999999999999999999999999999976644211    112333321  112256778999987632 22222


Q ss_pred             h-----------cccH-HHHhcC-CCCcEE-EEcCCCCccCHHHHHHHHHh--------CCccEEEeeCCCCC
Q 027408          108 G-----------MFDK-DRIAKM-KKGVLI-VNNARGAIMDTQAVVDACSS--------GHIAGYSGDVWNPQ  158 (223)
Q Consensus       108 ~-----------~i~~-~~~~~m-k~ga~i-vn~srg~~vd~~al~~~L~~--------g~i~~a~lDv~~~e  158 (223)
                      .           ++.+ +++-+. ++-.+| |.-+.|+--...-+...|++        |.|...++|+..++
T Consensus        84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~  156 (448)
T COG0771          84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA  156 (448)
T ss_pred             HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence            2           1222 233332 122344 55556776666666666665        66777888888763

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.06  E-value=0.0019  Score=59.43  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=70.3

Q ss_pred             cccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhhCCeecC-CHHhhcccCCEEEEcCC--
Q 027408           30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEE-DLDTMLPKCDIVVVNTP--  101 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~~-~l~e~l~~aDvVv~~~p--  101 (223)
                      .+..+.+++|.|+|.|.+|.++|+.|+..|++|.++|+.....     +..++.|+.... .-.+....+|+|+++.-  
T Consensus        10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         10 WHSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWR   89 (480)
T ss_pred             cccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcC
Confidence            4456889999999999999999999999999999999654211     123344665431 11123456999998763  


Q ss_pred             -CChhhh-----h--cccH-HHH-hcCCC----CcEEEEcCCCCccCHHHHHHHHHh
Q 027408          102 -LTEKTR-----G--MFDK-DRI-AKMKK----GVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       102 -~~~~t~-----~--~i~~-~~~-~~mk~----ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                       .++...     +  ++.+ +.+ ..+.+    ..+-|--+.|+.-...-+...|+.
T Consensus        90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence             333211     1  1222 222 23322    134455556776666666666765

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.05  E-value=0.0066  Score=55.23  Aligned_cols=112  Identities=21%  Similarity=0.288  Sum_probs=69.4

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-h-h---HHHhhCCee--cCCHHhhcccCCEEEEcCCCChh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-P-Q---LEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~-~---~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .+.+|++.|+|.|.+|..+|+.|...|++|+++|++... . +   .....++..  ....++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            468999999999999999999999999999999986421 1 1   112234432  23344566789999887643332


Q ss_pred             hhhcc----------c-HHHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          106 TRGMF----------D-KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       106 t~~~i----------~-~~~~~~-mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ...+.          . .+.+.. .+...+-|--+.|+.-..+-|...|+.
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            22110          0 111222 232233355567887777777777765

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.05  E-value=0.0057  Score=50.62  Aligned_cols=93  Identities=26%  Similarity=0.250  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-c----CCHHhh-----cccCCEEEEcCCCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-E----EDLDTM-----LPKCDIVVVNTPLT  103 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~----~~l~e~-----l~~aDvVv~~~p~~  103 (223)
                      ..|.+|.|.|.|.+|+.+++.++..|.+|++.+++....+..+..+... +    .+..+.     -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            4688999999999999999999999999999988754444444444321 1    111111     13578888777621


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                           ......++.|+++..+++++...
T Consensus       213 -----~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         213 -----ETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             -----HHHHHHHHhcccCCEEEEEccCC
Confidence                 12255667788888888776543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.05  E-value=0.00051  Score=61.40  Aligned_cols=63  Identities=21%  Similarity=0.331  Sum_probs=42.9

Q ss_pred             EEEEcccHHHHHHHHHHccCC-C-eEEEEcCCCCChhHH-Hh---hCCee-------cCCHHhhcccCCEEEEcCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFN-C-NLLYHDRVKMDPQLE-KE---TGAKF-------EEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~-~~---~g~~~-------~~~l~e~l~~aDvVv~~~p  101 (223)
                      |+|+|.|.+|+.+++.|...+ . +|++.||+....+.. ++   ..+..       ..+++++++++|+|+.|+|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~g   76 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAG   76 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCc
Confidence            789999999999999998765 4 899999976332222 11   11111       1246788999999999998

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.03  E-value=0.0077  Score=54.74  Aligned_cols=113  Identities=17%  Similarity=0.204  Sum_probs=70.0

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-h---hHHHhhCCeec--CCHHhhccc-CCEEEEcC--C-C
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-P---QLEKETGAKFE--EDLDTMLPK-CDIVVVNT--P-L  102 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~---~~~~~~g~~~~--~~l~e~l~~-aDvVv~~~--p-~  102 (223)
                      ++.|+++.|+|.|.+|.++|+.|...|++|.++|++... .   +.....|+...  ....+++.. +|+||...  | .
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~   81 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT   81 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence            367999999999999999999999999999999975422 1   12233455432  223344554 89887765  2 2


Q ss_pred             Chhh-------hhcccHH-HHhcCCC-CcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          103 TEKT-------RGMFDKD-RIAKMKK-GVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       103 ~~~t-------~~~i~~~-~~~~mk~-ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      +|..       ..++.+. .+..+.+ ..+-|--+.|+--...-+...|+..
T Consensus        82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            2211       1122222 2223322 3444666678877777777777653

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.00  E-value=0.0029  Score=52.56  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=60.0

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH---HHhhCCeec---CCHHhhcccCCEEEEcCCCCh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKETGAKFE---EDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---~~~~g~~~~---~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ...++|++|.|||.|.+|..=++.|..+|++|+++.+... ++.   .....+...   -.. +.+..+++|+.|+.   
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~-~el~~l~~~~~i~~~~r~~~~-~dl~g~~LViaATd---   94 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS-KEFLDLKKYGNLKLIKGNYDK-EFIKDKHLIVIATD---   94 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC-HHHHHHHhCCCEEEEeCCCCh-HHhCCCcEEEECCC---
Confidence            3467899999999999999989999999999999998642 222   111122211   122 34578999988886   


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEc
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                        ...+|+......+.-.+++|+
T Consensus        95 --D~~vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         95 --DEKLNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             --CHHHHHHHHHHHHHcCCeEEE
Confidence              233455555555554455554

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=97.00  E-value=0.0058  Score=53.80  Aligned_cols=96  Identities=14%  Similarity=0.135  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCC-CC-hhH-------HHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVK-MD-PQL-------EKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~-~~-~~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|.+|++||-+  ++.++++..+..+|++|.++.|.. .. .+.       ++..|  +...+++++.++++|+|...
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            5889999999975  799999999999999999998754 11 111       12234  44568999999999999886


Q ss_pred             CC----C-Ch---h-----hhhcccHHHHhcC-CCCcEEEEcC
Q 027408          100 TP----L-TE---K-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (223)
Q Consensus       100 ~p----~-~~---~-----t~~~i~~~~~~~m-k~ga~ivn~s  128 (223)
                      .=    . .+   +     ...-++++.++.. +++++|..+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL  275 (334)
T PRK12562        233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL  275 (334)
T ss_pred             CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence            41    0 00   0     1223566666664 5667666653

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.99  E-value=0.0035  Score=54.51  Aligned_cols=90  Identities=19%  Similarity=0.195  Sum_probs=62.9

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-C----CH---Hhhcc--cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E----DL---DTMLP--KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~----~l---~e~l~--~aDvVv~~~p~~  103 (223)
                      .|.+|.|+|.|.+|...++.++.+|.+ |++.+++....+.++++|+..+ .    +.   .++..  ..|+|+-++...
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~  242 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT  242 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence            589999999999999999999999999 9999887655556666675321 1    11   12222  478888776621


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .     .....+..++++..++.++.
T Consensus       243 ~-----~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         243 A-----ARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             H-----HHHHHHHHhhcCCEEEEEcC
Confidence            1     12455677888888877764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.98  E-value=0.0022  Score=58.75  Aligned_cols=113  Identities=19%  Similarity=0.169  Sum_probs=71.3

Q ss_pred             CCCCEEEEEcccHHHHH-HHHHHccCCCeEEEEcCCCCCh-hHHHhhCCeec-CCHHhhcccCCEEEEcC--C-CChhhh
Q 027408           34 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFE-EDLDTMLPKCDIVVVNT--P-LTEKTR  107 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~-iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~-~~l~e~l~~aDvVv~~~--p-~~~~t~  107 (223)
                      .++++|.|+|+|..|.+ +|+.|+..|++|.++|...... +..++.|+... ....+.+.++|+||..-  | .+|...
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            56789999999999999 7999999999999999764321 12334466432 22335567899988753  2 223221


Q ss_pred             -------hcccHH-HHhc-CCC-CcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408          108 -------GMFDKD-RIAK-MKK-GVLIVNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       108 -------~~i~~~-~~~~-mk~-ga~ivn~srg~~vd~~al~~~L~~g~  146 (223)
                             .++.+. .+.. +++ ..+-|--+.|+.-...-+.+.|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   123332 3233 333 24446666788777777777776544

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.96  E-value=0.0052  Score=55.53  Aligned_cols=89  Identities=25%  Similarity=0.315  Sum_probs=62.2

Q ss_pred             CCCCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCC
Q 027408           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        33 ~l~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+|||...... ...  .....++++.++++|+|+++++-
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~~--~~~~~~~~~~~~~ad~~v~~t~~  386 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VKG--LPLIDDLEEALKGADALVILTDH  386 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hhh--cccCCCHHHHHhCCCEEEEecCC
Confidence            589999999996          44678899999999999999999643222 222  22246889999999999999973


Q ss_pred             ChhhhhcccHHHH-hcCCCCcEEEEc
Q 027408          103 TEKTRGMFDKDRI-AKMKKGVLIVNN  127 (223)
Q Consensus       103 ~~~t~~~i~~~~~-~~mk~ga~ivn~  127 (223)
                      . +.+. ++-+.+ +.|+ ..+++|.
T Consensus       387 ~-~~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       387 D-EFKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             H-HHhc-cCHHHHHHhcC-CCEEEeC
Confidence            2 2222 333434 3454 4577764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.96  E-value=0.0034  Score=56.01  Aligned_cols=68  Identities=25%  Similarity=0.405  Sum_probs=53.2

Q ss_pred             CCCCEEEEEccc----------HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCC
Q 027408           34 LEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      |.||+|||.|+-          .-...++++|+..|.+|.+|||...........++...+++++++++||++++++.
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te  385 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE  385 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence            899999999962          45678899999999999999985422211111136778999999999999999886

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.95  E-value=0.0035  Score=50.43  Aligned_cols=65  Identities=14%  Similarity=0.102  Sum_probs=48.5

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----hhCCeecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----ETGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----~~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      +||+|||. |.+|+.+++.+...|++|+++-|++......+     +..+...+++.+.+...|+||.+..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence            68999996 99999999999999999999998863322211     1223223455578889999998865

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.95  E-value=0.0032  Score=55.74  Aligned_cols=92  Identities=23%  Similarity=0.253  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-hCCeecCCH-H--------hhc--ccCCEEEEcC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFEEDL-D--------TML--PKCDIVVVNT  100 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~~~l-~--------e~l--~~aDvVv~~~  100 (223)
                      ..+.++.|+|.|.||...+..++.+|. +|++.|+++...+.+++ .+.....+. +        ++-  ..+|+++-|+
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~  246 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV  246 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence            344499999999999999999999997 58888998877777777 454432221 1        222  2499999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      . ++.    .-.+.++..+++..++.++-.
T Consensus       247 G-~~~----~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         247 G-SPP----ALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             C-CHH----HHHHHHHHhcCCCEEEEEecc
Confidence            8 222    226778888999888888754

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.94  E-value=0.0031  Score=57.85  Aligned_cols=92  Identities=13%  Similarity=0.124  Sum_probs=61.8

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH---HHhhCCee--cCCHHhhcccCCEEEEcCCCChh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKETGAKF--EEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ..+|+|++|.|||.|.++..=++.|..+|++|.++.+... .+.   .....+..  -.-.++.++.+++|+.++...+ 
T Consensus         7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~-~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~-   84 (457)
T PRK10637          7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFI-PQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA-   84 (457)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCC-HHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH-
Confidence            3579999999999999999999999999999999988542 222   11112211  1112345678999888876332 


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                          +|.+.....+...+++|++
T Consensus        85 ----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         85 ----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             ----HhHHHHHHHHHcCcEEEEC
Confidence                4555555555555666664

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.93  E-value=0.0068  Score=53.62  Aligned_cols=90  Identities=13%  Similarity=0.168  Sum_probs=62.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCeec---C---CHHhhcccCCEEEEcCCCChhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---E---DLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~---~---~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .|++|.|.|.|.+|...++.++.+|.+|++.+.+... .+.++++|+..+   .   .+.+.....|+|+-++.. +.+ 
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-~~~-  260 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-VHA-  260 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC-HHH-
Confidence            6899999999999999999999999998887765422 334456676322   1   122333457999887752 111 


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                         ..+.++.++++..++.++.
T Consensus       261 ---~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        261 ---LGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             ---HHHHHHHhcCCcEEEEeCC
Confidence               2456788899888888764

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.92  E-value=0.0028  Score=53.30  Aligned_cols=85  Identities=22%  Similarity=0.194  Sum_probs=57.2

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-----------------------HHHhhC----Cee-
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKETG----AKF-   82 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~g----~~~-   82 (223)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++.++|+......                       ...+.+    +.. 
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            46899999999999999999999999887 5888886532110                       000111    111 


Q ss_pred             ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK  117 (223)
Q Consensus        83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~  117 (223)
                         .  .+.+++++++|+|+.++ .+.+++..+++...+.
T Consensus       100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~  138 (240)
T TIGR02355       100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFAA  138 (240)
T ss_pred             eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence               1  23556788899888776 4566777776665554

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.90  E-value=0.0028  Score=58.69  Aligned_cols=67  Identities=22%  Similarity=0.283  Sum_probs=48.0

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhh--CCeec--CCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET--GAKFE--EDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~--g~~~~--~~l~e~l~~aDvVv~~   99 (223)
                      ++.+++|.|+|+|..|.++|+.|+..|.+|.++|......  +..+..  ++...  ....+.+.++|+|+..
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s   76 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS   76 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence            3678999999999999999999999999999999754221  112222  33321  1234556789999886

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.88  E-value=0.0027  Score=56.05  Aligned_cols=85  Identities=19%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh---------------------hH----HHhhC--C--e
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP---------------------QL----EKETG--A--K   81 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~---------------------~~----~~~~g--~--~   81 (223)
                      ..|..++|.|||+|.+|..+|+.|...|. ++.++|......                     +.    .++.+  +  .
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~   99 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE   99 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999998 799999753100                     00    01111  1  1


Q ss_pred             e------cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408           82 F------EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK  117 (223)
Q Consensus        82 ~------~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~  117 (223)
                      .      ..+..++++++|+|+.++- +..++.++++...+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~  140 (339)
T PRK07688        100 AIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQKY  140 (339)
T ss_pred             EEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHHh
Confidence            1      1234567888898877754 566777776655543

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=96.87  E-value=0.0097  Score=51.94  Aligned_cols=68  Identities=18%  Similarity=0.268  Sum_probs=53.1

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChh-------HHHhhC-CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-------LEKETG-AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-------~~~~~g-~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|++|++||- +++.++++..+..+|++|.+..|.....+       .++..| +...+++++.++++|+|..-+
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~  226 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT  226 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence            489999999996 79999999999999999999998652211       112223 455679999999999998843

>PRK06392 homoserine dehydrogenase; Provisional

Probab=96.87  E-value=0.0062  Score=53.49  Aligned_cols=111  Identities=16%  Similarity=0.252  Sum_probs=65.9

Q ss_pred             CEEEEEcccHHHHHHHHHHcc--------CCCeEE-EEcCCCC--C-h-----hH---HHhhCC--eecC--CHHhhc-c
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP--------FNCNLL-YHDRVKM--D-P-----QL---EKETGA--KFEE--DLDTML-P   91 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~--------~G~~V~-~~d~~~~--~-~-----~~---~~~~g~--~~~~--~l~e~l-~   91 (223)
                      ++|+|+|+|++|+.+++.+..        .+.+|. +.|++..  . .     +.   .....+  ....  ++++++ .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            379999999999999999865        456644 4555421  0 0     10   111001  1112  566664 4


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCcc
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~  148 (223)
                      ++|+|+-|+|....-... -.-..+.++.|..+|-.+.|.+. .-..|.+..++++..
T Consensus        81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~  137 (326)
T PRK06392         81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI  137 (326)
T ss_pred             CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence            689999999843211111 12335567789999988887774 455566666655443

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.86  E-value=0.0024  Score=56.98  Aligned_cols=63  Identities=21%  Similarity=0.419  Sum_probs=44.7

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhhCC-eecC---CHHhhcccCCEEEE
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGA-KFEE---DLDTMLPKCDIVVV   98 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~-~~~~---~l~e~l~~aDvVv~   98 (223)
                      .++|||||.|..|+.++..++.+|++|+++|+++..+... ...-+ ..+.   .+.++++.+|+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            4789999999999999999999999999999875432211 11001 0122   35567788998865

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.86  E-value=0.0074  Score=54.85  Aligned_cols=90  Identities=18%  Similarity=0.125  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--CCeec----CCHHh----hcccCCEEEEcCCCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAKFE----EDLDT----MLPKCDIVVVNTPLT  103 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~~~----~~l~e----~l~~aDvVv~~~p~~  103 (223)
                      +..+++.|+|+|.+|+.+++.|...|.+|+++|+++...+.....  ++..+    .+.+.    -+.++|.|+++++..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            567899999999999999999999999999999876433322221  32211    22222    246899999888855


Q ss_pred             hhhhhcccHHHHhcCCCCcEEE
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      ..+  ++.....+.+.+..+++
T Consensus       309 ~~n--~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        309 EAN--ILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             HHH--HHHHHHHHHhCCCeEEE
Confidence            433  33333444455544444

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=96.85  E-value=0.0039  Score=53.89  Aligned_cols=89  Identities=12%  Similarity=0.007  Sum_probs=58.2

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ..|+++.|+|.|.+|...++.++.+|++ |.+++++....+.+....+  .+.-++.-...|+|+-++... .    .-.
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~-~----~~~  215 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDP-S----LID  215 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCH-H----HHH
Confidence            3578899999999999999999999997 5566765432222222211  211111223579998887621 1    125


Q ss_pred             HHHhcCCCCcEEEEcCC
Q 027408          113 DRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~sr  129 (223)
                      ..++.++++..++.++-
T Consensus       216 ~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       216 TLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             HHHHhhhcCcEEEEEee
Confidence            66788899888887753

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.83  E-value=0.0019  Score=51.09  Aligned_cols=65  Identities=17%  Similarity=0.219  Sum_probs=48.1

Q ss_pred             EEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-------cCCHHhhcccCCEEEEcCCCChh
Q 027408           39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        39 igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      |.|+|. |.+|+.+++.|...|.+|.++.|++...+.  ..+++.       .+++.+.++.+|.|+.+++....
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence            679995 999999999999999999999997643322  223321       13456778899999999874333

...

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.83  E-value=0.0042  Score=51.19  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=33.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV   68 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~   68 (223)
                      ..|..++|+|||+|.+|..+|+.|...|.. +.++|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            468999999999999999999999988985 8888876

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.83  E-value=0.011  Score=52.49  Aligned_cols=68  Identities=16%  Similarity=0.281  Sum_probs=50.6

Q ss_pred             CCCCCEEEEEccc--------HHHHHHHHHHccCCCeEEEEcCCCC--ChhH-------HHhhCC--eecCCHHhhcccC
Q 027408           33 DLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETGA--KFEEDLDTMLPKC   93 (223)
Q Consensus        33 ~l~g~~igIiG~G--------~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g~--~~~~~l~e~l~~a   93 (223)
                      .|.|+||+|+|.|        ++.++++..+..+|++|.+..|...  .++.       +++.|.  ...+++++.++++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999999843        5668888899999999999998642  2222       123343  4568999999999


Q ss_pred             CEEEEcC
Q 027408           94 DIVVVNT  100 (223)
Q Consensus        94 DvVv~~~  100 (223)
                      |+|....
T Consensus       247 Dvvyt~~  253 (357)
T TIGR03316       247 DIVYPKS  253 (357)
T ss_pred             CEEEECC
Confidence            9998863

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.81  E-value=0.014  Score=53.43  Aligned_cols=110  Identities=12%  Similarity=0.117  Sum_probs=73.6

Q ss_pred             CCCCEEEEEcc----cHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhh
Q 027408           34 LEGKTVGTVGC----GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        34 l~g~~igIiG~----G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      ++=++|+|||.    |++|..+.+.+...|+  +|+.++|...     .-.|+..+.+++++-...|++++++|.. .+.
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-----~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~   78 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-----EILGVKAYPSVLEIPDPVDLAVIVVPAK-YVP   78 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-----ccCCccccCCHHHCCCCCCEEEEecCHH-HHH
Confidence            56789999998    8899999999998887  6888887542     2346777789999888899999999922 222


Q ss_pred             hcccHHHHhcCCCCcE-EEEcCCCCc-----cCHHHHHHHHHhCCccEEE
Q 027408          108 GMFDKDRIAKMKKGVL-IVNNARGAI-----MDTQAVVDACSSGHIAGYS  151 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~-ivn~srg~~-----vd~~al~~~L~~g~i~~a~  151 (223)
                      .++ ++..+ .+-..+ ++..+-++.     ..+++|.+..+++.++-.+
T Consensus        79 ~~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG  126 (447)
T TIGR02717        79 QVV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG  126 (447)
T ss_pred             HHH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence            222 33333 333333 333322232     2356788888887766443

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.80  E-value=0.0044  Score=54.42  Aligned_cols=90  Identities=14%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecC--------CHHhhcc------cCC----EE
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--------DLDTMLP------KCD----IV   96 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~--------~l~e~l~------~aD----vV   96 (223)
                      .|.+|.|.|.|.+|...++.++..|.+|++.++++...+.++++|+..+-        ++.+.+.      ..|    +|
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v  245 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI  245 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence            48999999999999999999999999999998876555566666653211        1111111      233    66


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +-++.. +.    .....++.++++..++.++.
T Consensus       246 ~d~~g~-~~----~~~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       246 FECSGS-KP----GQESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             EECCCC-hH----HHHHHHHHHhcCCeEEEECc
Confidence            666652 11    11445677888888887765

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.79  E-value=0.0064  Score=54.23  Aligned_cols=90  Identities=17%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC-ChhHHHhhCCeec---CC---HHhhcccCCEEEEcCCCChhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~---~~---l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .|++|.|.|.|.+|...++.++.+|.+|++.+++.. ..+.++++|+...   .+   +.+.....|+|+-++....   
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~---  254 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEH---  254 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHH---
Confidence            589999999999999999999999999988887542 2345556666422   11   2222334788888765211   


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        .-.+.++.++++..++.++-
T Consensus       255 --~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        255 --ALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             --HHHHHHHhhcCCCEEEEEcc
Confidence              11455677788888877753

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.79  E-value=0.002  Score=55.77  Aligned_cols=54  Identities=22%  Similarity=0.160  Sum_probs=46.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecCCHHh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDT   88 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~e   88 (223)
                      .|++++|+|+|.+|.++++.+++.|. +|+++|.++..-+.++++|+..+-+..+
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d  246 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD  246 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh
Confidence            68999999999999999999999997 6999999987777888888765545443

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=96.79  E-value=0.012  Score=53.04  Aligned_cols=67  Identities=16%  Similarity=0.320  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcc-----c---HHHHHHHHHHccCCCeEEEEcCCCC--ChhH-------HHhhC--CeecCCHHhhcccCC
Q 027408           34 LEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETG--AKFEEDLDTMLPKCD   94 (223)
Q Consensus        34 l~g~~igIiG~-----G---~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g--~~~~~~l~e~l~~aD   94 (223)
                      +.|++|+|+|-     |   ++.++++..+..+|++|.++.|..-  .++.       ++..|  +...++++++++++|
T Consensus       185 l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aD  264 (395)
T PRK07200        185 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDAD  264 (395)
T ss_pred             cCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCC
Confidence            88999999985     5   6779999999999999999998631  2221       22234  445689999999999


Q ss_pred             EEEEcC
Q 027408           95 IVVVNT  100 (223)
Q Consensus        95 vVv~~~  100 (223)
                      +|..-.
T Consensus       265 vVYtd~  270 (395)
T PRK07200        265 IVYPKS  270 (395)
T ss_pred             EEEEcC
Confidence            998763

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.77  E-value=0.0019  Score=54.22  Aligned_cols=96  Identities=19%  Similarity=0.204  Sum_probs=67.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC----eEEEEcCCCCChhH-HHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~-~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      +++|+||.|.|..++++.+...|.    +++.+-++...... ++..|+..+..-.+.++.+|++++++.  |.....+.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK--p~~i~~vl   78 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK--PQVIESVL   78 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec--chhHHHHh
Confidence            468999999999999999988775    57777774444444 667788755555888899999999986  33222222


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccC
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMD  134 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd  134 (223)
                      .+.-.....+.+++.+.-|..++
T Consensus        79 s~~~~~~~~~~iivS~aaG~tl~  101 (267)
T KOG3124|consen   79 SEIKPKVSKGKIIVSVAAGKTLS  101 (267)
T ss_pred             hcCccccccceEEEEEeecccHH
Confidence            22222244567899998887553

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.75  E-value=0.0031  Score=51.37  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=34.2

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~   69 (223)
                      ..|..++|.|+|+|.+|..+++.|...|.. +.++|...
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            469999999999999999999999999985 88998753

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.74  E-value=0.0046  Score=53.60  Aligned_cols=62  Identities=18%  Similarity=0.197  Sum_probs=43.1

Q ss_pred             EEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHhh-------C---CeecCCHHhhcccCCEEEEcCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-------G---AKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~~-------g---~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      |+|||.|.+|..+|..+...|  .++..+|++....+ ...++       .   +....+ .+.+++||+|+++..
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag   75 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCC
Confidence            589999999999999998877  47999998653221 11111       0   111233 457889999999876

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.72  E-value=0.0042  Score=53.76  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=26.9

Q ss_pred             EEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~   68 (223)
                      +|.|+|+|.+|..+|+.|...|. ++.++|..
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            58999999999999999999998 47777753

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.70  E-value=0.009  Score=52.01  Aligned_cols=90  Identities=20%  Similarity=0.242  Sum_probs=62.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec---CC---HHhhcccCCEEEEcCCCChhhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~---l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .|.++.|.|.|.+|..+++.++.+|.+|++.+++....+.+..+++..+   .+   .++.-...|+|+.+.+..     
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~-----  243 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS-----  243 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence            5789999999999999999999999999999887644555555554321   11   111224578888777632     


Q ss_pred             cccHHHHhcCCCCcEEEEcCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ....+.++.++++..+++++.
T Consensus       244 ~~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         244 HDLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             chHHHHHHHhcCCCEEEEEec
Confidence            112566777777777777754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PLN02740 Alcohol dehydrogenase-like

Probab=96.70  E-value=0.0073  Score=53.79  Aligned_cols=90  Identities=14%  Similarity=0.092  Sum_probs=61.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecC-------CHHhhc----c-cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDTML----P-KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~e~l----~-~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+-       ++.+.+    . ..|+|+-++.
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G  277 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG  277 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 599999877666666777753211       122211    1 4788887775


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr  129 (223)
                      .. .    .-...+..++++ ..++.++-
T Consensus       278 ~~-~----~~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        278 NV-E----VLREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             Ch-H----HHHHHHHhhhcCCCEEEEEcc
Confidence            21 1    124556667675 66666653

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.70  E-value=0.0056  Score=54.26  Aligned_cols=90  Identities=17%  Similarity=0.131  Sum_probs=62.9

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-C----CHHh----hcc-cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E----DLDT----MLP-KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~----~l~e----~l~-~aDvVv~~~p~~  103 (223)
                      .|.+|.|.|.|.+|...++.++..|. +|++.++++...+.++++|+..+ +    ++.+    +.. ..|+|+-++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            58899999999999999999999999 59999887656666677776321 1    1111    111 378888877521


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +     .....++.++++..++.++-
T Consensus       271 ~-----~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         271 P-----ALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             H-----HHHHHHHHHhcCCEEEEEcc
Confidence            1     12455677888888877763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.69  E-value=0.006  Score=53.49  Aligned_cols=68  Identities=25%  Similarity=0.279  Sum_probs=46.1

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCC--CeEEEEcCCCCChhHHHh-------hCCeecCC---HHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKE-------TGAKFEED---LDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~-------~g~~~~~~---l~e~l~~aDvVv~~   99 (223)
                      -+..+||+|+|. |.+|..+|..+...+  .++..+|+.. ....+.+       ..+...++   ..+.+++||+|+++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~-~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit   83 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG-APGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC   83 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC-CcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence            367779999999 999999999998544  5799999832 1111111       11221222   25788999999987


Q ss_pred             CC
Q 027408          100 TP  101 (223)
Q Consensus       100 ~p  101 (223)
                      +-
T Consensus        84 aG   85 (321)
T PTZ00325         84 AG   85 (321)
T ss_pred             CC
Confidence            65

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=96.68  E-value=0.012  Score=52.02  Aligned_cols=67  Identities=21%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHc-cCCCeEEEEcCCCC--ChhH---HHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLK-PFNCNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~-~~G~~V~~~d~~~~--~~~~---~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|++|++||-   +++..+++..+. .+|++|.+..|..-  +.+.   ++..|  +...+++++.++++|+|...
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            589999999997   688999998776 44999999988642  2222   12233  44568999999999999874

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.68  E-value=0.0034  Score=45.01  Aligned_cols=65  Identities=20%  Similarity=0.221  Sum_probs=44.0

Q ss_pred             CCEEEEEcccHHHHHHHHHH-ccCCCe-EEEEcCCCCChhHHHhhCCeecCCHHhhccc--CCEEEEcCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRL-KPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l-~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~--aDvVv~~~p  101 (223)
                      ..++.|+|+|+.|++++... ...|+. +.++|.++.... ..-.++..+.+++++.+.  .|+-++++|
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G-~~i~gipV~~~~~~l~~~~~i~iaii~VP   71 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG-KEIGGIPVYGSMDELEEFIEIDIAIITVP   71 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT-SEETTEEEESSHHHHHHHCTTSEEEEES-
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC-cEECCEEeeccHHHhhhhhCCCEEEEEcC
Confidence            34799999999999998555 345765 456676553221 122356655577777766  999999999

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.68  E-value=0.0056  Score=48.86  Aligned_cols=79  Identities=25%  Similarity=0.386  Sum_probs=51.9

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCCh------------------hH-HH---hh--CCee--------cC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDP------------------QL-EK---ET--GAKF--------EE   84 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~------------------~~-~~---~~--g~~~--------~~   84 (223)
                      +|+|+|+|.+|..+++.|...|.. +.++|......                  +. .+   +.  .++.        ..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~   80 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN   80 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence            589999999999999999988984 88888753100                  00 00   11  1111        12


Q ss_pred             CHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408           85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK  117 (223)
Q Consensus        85 ~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~  117 (223)
                      +++++++++|+|+.| -.+.+++..++....+.
T Consensus        81 ~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~  112 (174)
T cd01487          81 NLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN  112 (174)
T ss_pred             hHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence            445778889999888 44667766665555554

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.66  E-value=0.0061  Score=55.27  Aligned_cols=70  Identities=11%  Similarity=0.066  Sum_probs=52.1

Q ss_pred             ccCCCCCEEEEEcc----------cHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEc
Q 027408           31 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        31 ~~~l~g~~igIiG~----------G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~   99 (223)
                      +.++.|++|+|+|+          ..-+..+++.|...| .+|.+|||.-...... ..+.....++++.+++||+|+++
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~-~~~~~~~~~~~~~~~~ad~vvi~  393 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKK-LDGLVTLVSLDEALATADVLVML  393 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhh-ccCceeeCCHHHHHhCCCEEEEC
Confidence            45689999999996          446788999999986 9999999963221110 01111236899999999999999


Q ss_pred             CC
Q 027408          100 TP  101 (223)
Q Consensus       100 ~p  101 (223)
                      ++
T Consensus       394 t~  395 (415)
T PRK11064        394 VD  395 (415)
T ss_pred             CC
Confidence            98

>PRK06153 hypothetical protein; Provisional

Probab=96.64  E-value=0.0041  Score=55.56  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~   68 (223)
                      .|.+++|+|||+|.+|..++..|...|. ++..+|..
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            6899999999999999999999999887 58888764

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=96.63  E-value=0.013  Score=51.29  Aligned_cols=91  Identities=13%  Similarity=0.127  Sum_probs=61.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i  110 (223)
                      .|.+|.|+|.|.+|...++.++. +| .+|+++++++...+.++..+...  ..+++.+  ..|+|+-++... .+...+
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~-~~~~~~  239 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGR-GSQSAI  239 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCC-ccHHHH
Confidence            58999999999999999988875 54 67999998765555555444332  1222222  379999888631 011112


Q ss_pred             cHHHHhcCCCCcEEEEcCC
Q 027408          111 DKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~sr  129 (223)
                       .+.++.++++..++.++-
T Consensus       240 -~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         240 -NQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             -HHHHHhCcCCcEEEEEee
Confidence             567788999988887753

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.62  E-value=0.0053  Score=53.24  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=46.9

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-------cCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p  101 (223)
                      ++|.|.| .|.+|+.+++.|...|++|.+.+|+..........+++.       ..++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4799999 599999999999999999999998753222212223321       2345677889999987654

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=96.61  E-value=0.023  Score=49.80  Aligned_cols=65  Identities=20%  Similarity=0.215  Sum_probs=44.4

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCCCC---h----hHHHh-----hCCeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---P----QLEKE-----TGAKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~---~----~~~~~-----~g~~~~~~l~e~l~~aDvV   96 (223)
                      ++|+|||. |.+|..+|..+...|.       ++..+|.....   .    +....     ..+....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            48999999 9999999998876554       79999985321   1    11110     0112223456778999999


Q ss_pred             EEcCC
Q 027408           97 VVNTP  101 (223)
Q Consensus        97 v~~~p  101 (223)
                      +++.-
T Consensus        83 vitaG   87 (322)
T cd01338          83 LLVGA   87 (322)
T ss_pred             EEeCC
Confidence            99864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.60  E-value=0.0079  Score=52.96  Aligned_cols=90  Identities=18%  Similarity=0.245  Sum_probs=62.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-----CCHH----hhcc--cCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLP--KCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~----e~l~--~aDvVv~~~p~  102 (223)
                      .|++|.|.|.|.+|...++.++..|.+ |++.+++....+.++++|...+     .+..    ++..  ..|+|+-++..
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~  255 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR  255 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            589999999999999999999999985 9899887666666667765321     1111    1222  47888877652


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       +.+   + ...+..++++..++.++.
T Consensus       256 -~~~---~-~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       256 -PET---Y-KQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             -HHH---H-HHHHHHhccCCEEEEECC
Confidence             211   1 445677888888887764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.59  E-value=0.0067  Score=55.82  Aligned_cols=111  Identities=17%  Similarity=0.211  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC-Chh---HHHhhCCee-cCCHHhhcccCCEEEEcC--C-CChh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ---LEKETGAKF-EEDLDTMLPKCDIVVVNT--P-LTEK  105 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~---~~~~~g~~~-~~~l~e~l~~aDvVv~~~--p-~~~~  105 (223)
                      +.|++|+|+|+|.-|.+.|+.|...|.+|+++|.... ...   ..+..+... .....+.+.++|+||..-  | .+|.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            5789999999999999999999999999999996432 111   111111111 112245567899988753  2 2222


Q ss_pred             hh-------hcccHHHH--hc-CC-----CCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          106 TR-------GMFDKDRI--AK-MK-----KGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       106 t~-------~~i~~~~~--~~-mk-----~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ..       .++.+-.+  .. ++     +..+-|--+.|+.-...-+...|+.
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            11       13433332  32 32     1234466667877777777777765

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=96.57  E-value=0.0075  Score=52.10  Aligned_cols=92  Identities=25%  Similarity=0.220  Sum_probs=62.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCee-c----CCHH--h--hcccCCEEEEcCCCCh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKF-E----EDLD--T--MLPKCDIVVVNTPLTE  104 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~-~----~~l~--e--~l~~aDvVv~~~p~~~  104 (223)
                      .|.+|.|+|.|.+|+.+++.+++.|++ |++.+++....+...+.+... +    .+..  .  .-...|+++-+++.. 
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~-  237 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP-  237 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh-
Confidence            578999999999999999999999998 888887654444444455421 1    1111  1  113578888776521 


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                          ....+.++.|+++..+++++...
T Consensus       238 ----~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         238 ----KTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             ----HHHHHHHHHHhcCCEEEEEecCC
Confidence                12356677788888888876544

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK08223 hypothetical protein; Validated

Probab=96.57  E-value=0.01  Score=51.12  Aligned_cols=86  Identities=16%  Similarity=0.200  Sum_probs=57.5

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-------------------HH----HhhC----Ce--
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-------------------LE----KETG----AK--   81 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-------------------~~----~~~g----~~--   81 (223)
                      ..|..++|.|||+|.+|..+|+.|...|. ++.++|.......                   .+    .+.+    +.  
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~  102 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF  102 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            46999999999999999999999999997 4778876431110                   00    0111    11  


Q ss_pred             ----ecCCHHhhcccCCEEEEcCCCC-hhhhhcccHHHHhc
Q 027408           82 ----FEEDLDTMLPKCDIVVVNTPLT-EKTRGMFDKDRIAK  117 (223)
Q Consensus        82 ----~~~~l~e~l~~aDvVv~~~p~~-~~t~~~i~~~~~~~  117 (223)
                          ..++.+++++++|+|+-++..- -+++..+++...+.
T Consensus       103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~  143 (287)
T PRK08223        103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR  143 (287)
T ss_pred             ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc
Confidence                1245678888999998666431 25667776665554

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.57  E-value=0.01  Score=54.09  Aligned_cols=113  Identities=15%  Similarity=0.172  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHh--hCCeec--CCHHhhcccCCEEEEcCC---CC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE--EDLDTMLPKCDIVVVNTP---LT  103 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~--~~l~e~l~~aDvVv~~~p---~~  103 (223)
                      ++.+++|.|+|.|.+|.++|+.|...|.+|.++|......  +..++  .|+...  ...++.+.++|+||...-   .+
T Consensus         2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~   81 (445)
T PRK04308          2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ   81 (445)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence            3678999999999999999999999999999999765332  11122  255432  112344568999987642   22


Q ss_pred             hhhhh-------ccc-HHHHhc-CC---CCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          104 EKTRG-------MFD-KDRIAK-MK---KGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       104 ~~t~~-------~i~-~~~~~~-mk---~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      |....       ++. .+.+.. ++   ...+-|--+.|+.-...-+...|+..
T Consensus        82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~  135 (445)
T PRK04308         82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC  135 (445)
T ss_pred             HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            32211       222 223333 32   12344555667776666667777653

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.57  E-value=0.0097  Score=51.97  Aligned_cols=93  Identities=26%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             EEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCCCCh---hHHHhh---CCeec---CCHHhhcccCCEEEEcCCCC--
Q 027408           38 TVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP---QLEKET---GAKFE---EDLDTMLPKCDIVVVNTPLT--  103 (223)
Q Consensus        38 ~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~---~~~~~~---g~~~~---~~l~e~l~~aDvVv~~~p~~--  103 (223)
                      ||+|||. |.+|..+|..+...+.  ++..+|+.+...   ++....   .+..+   +++.+.+++||+|+++....  
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            5899999 9999999998876554  799999865111   111100   11111   13467899999999986531  


Q ss_pred             h-hhhh-cc--c----H---HHHhcCCCCcEEEEcCCC
Q 027408          104 E-KTRG-MF--D----K---DRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       104 ~-~t~~-~i--~----~---~~~~~mk~ga~ivn~srg  130 (223)
                      | .++. ++  |    +   +.+....|++++++++..
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP  118 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP  118 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            1 1111 11  1    1   122333588999998754

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN02602 lactate dehydrogenase

Probab=96.55  E-value=0.0098  Score=52.75  Aligned_cols=92  Identities=16%  Similarity=0.255  Sum_probs=56.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHh-------hC-Cee--cCCHHhhcccCCEEEEcCCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE-------TG-AKF--EEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~-------~g-~~~--~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      +||+|||.|.+|..+|..+...+.  ++..+|.+....+ .+.+       .+ ...  ..+.++ +++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCCC
Confidence            699999999999999998876665  6999998653221 1111       01 111  124444 88999999985431


Q ss_pred             --h-hhh-hcc--c----H---HHHhcCCCCcEEEEcCC
Q 027408          104 --E-KTR-GMF--D----K---DRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 --~-~t~-~~i--~----~---~~~~~mk~ga~ivn~sr  129 (223)
                        | .++ .++  |    +   +.+....+.+++++++.
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              1 121 111  1    1   12233457888988874

>PLN00106 malate dehydrogenase

Probab=96.54  E-value=0.0062  Score=53.43  Aligned_cols=98  Identities=21%  Similarity=0.234  Sum_probs=60.0

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCCCCh---hHHH---hhCCee---cCCHHhhcccCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP---QLEK---ETGAKF---EEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~---~~~~---~~g~~~---~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ..+||+|+|. |.+|..+|..+...+.  ++..+|+.....   ++..   ...+..   .+++.+.+++||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            4569999999 9999999999975544  799999865211   1110   011111   23456889999999987642


Q ss_pred             --Ch-hhhh-cc------cHHHH---hcCCCCcEEEEcCCCCc
Q 027408          103 --TE-KTRG-MF------DKDRI---AKMKKGVLIVNNARGAI  132 (223)
Q Consensus       103 --~~-~t~~-~i------~~~~~---~~mk~ga~ivn~srg~~  132 (223)
                        .| .++. ++      -.+..   ....+.+++++++..--
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD  139 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN  139 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence              21 1111 11      12222   33347889998876553

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.52  E-value=0.033  Score=48.03  Aligned_cols=105  Identities=15%  Similarity=0.198  Sum_probs=74.4

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhh---------
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT---------  106 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t---------  106 (223)
                      |++++|||-=.--..+++.|...|++|..+........ .  .++...+..++.++++|+|++-+|.+...         
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~   77 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG-F--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN   77 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc-c--ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence            68999999999899999999999999888875321111 1  15555666777799999999999965542         


Q ss_pred             -hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          107 -RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       107 -~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                       +-.++++.++.+++++++ -++    ++..++.++.++..+.
T Consensus        78 ~~~~l~~~~l~~~~~~~~~-~~G----~~~~~l~~~a~~~gi~  115 (287)
T TIGR02853        78 EKVVLTPELLESTKGHCTI-YVG----ISNPYLEQLAADAGVK  115 (287)
T ss_pred             CCccccHHHHHhcCCCCEE-EEe----cCCHHHHHHHHHCCCe
Confidence             112568899999976653 333    4445566566777666

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.52  E-value=0.011  Score=50.85  Aligned_cols=90  Identities=18%  Similarity=0.138  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc--ccCCEEEEcCCCChhhhhccc
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l--~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      -.|.+|.|.|.|.+|+.+++.++..|.+|++.+.++...+.++++|+....+..+..  ...|+++-+.....     ..
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~-----~~  228 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPS-----GL  228 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChH-----HH
Confidence            358899999999999999999999999998888765555556667764332332222  34788888765211     12


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 027408          112 KDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~s  128 (223)
                      ...++.++++..++..+
T Consensus       229 ~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         229 ELALRLVRPRGTVVLKS  245 (319)
T ss_pred             HHHHHHhhcCCEEEEEc
Confidence            45567778877777643

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.52  E-value=0.009  Score=52.62  Aligned_cols=88  Identities=20%  Similarity=0.266  Sum_probs=51.9

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCC---eEEEEcCCCCChhHHHhhC--CeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~g--~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +++|+|+|. |.+|+.+++.|...++   ++.+..+.....+.....+  +...+...+.+.++|+|++|+|...     
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~-----   75 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSV-----   75 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHH-----
Confidence            468999995 9999999999988655   4455543321111111111  1111111123478999999998321     


Q ss_pred             ccHHHHh-cCCCCcEEEEcCC
Q 027408          110 FDKDRIA-KMKKGVLIVNNAR  129 (223)
Q Consensus       110 i~~~~~~-~mk~ga~ivn~sr  129 (223)
                       ..+... .++.|+.+||.|.
T Consensus        76 -s~~~~~~~~~~G~~VIDlS~   95 (334)
T PRK14874         76 -SKKYAPKAAAAGAVVIDNSS   95 (334)
T ss_pred             -HHHHHHHHHhCCCEEEECCc
Confidence             223222 2357889998875

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.50  E-value=0.0097  Score=52.74  Aligned_cols=89  Identities=19%  Similarity=0.153  Sum_probs=59.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecC-------CHHhhc-----ccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDTML-----PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~e~l-----~~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+...-       ++.+.+     ...|+++-++.
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G  264 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIG  264 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            58999999999999999999999999 799998876556666667653211       111111     14688877765


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~s  128 (223)
                      . +.    ...+.++.++++ ..++.++
T Consensus       265 ~-~~----~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       265 N-VN----VMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             C-HH----HHHHHHHHhhcCCCeEEEEe
Confidence            2 11    124556666664 5655554

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.50  E-value=0.012  Score=51.19  Aligned_cols=90  Identities=17%  Similarity=0.209  Sum_probs=60.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc---ccCCEEEEcCCCChhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML---PKCDIVVVNTPLTEKT  106 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l---~~aDvVv~~~p~~~~t  106 (223)
                      .|.+|.|.|.|.+|..+++.++.+|.+|++.+++....+.+.++|+..+     .++.+.+   ...|+++-++...   
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~---  239 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNA---  239 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCch---
Confidence            5889999999999999999999999999999887655555555664221     1121111   3467777654311   


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        ......+..++++..+++++.
T Consensus       240 --~~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         240 --KAISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             --HHHHHHHHHcccCCEEEEEec
Confidence              112455677777777777754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK08328 hypothetical protein; Provisional

Probab=96.49  E-value=0.011  Score=49.25  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=32.9

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~   68 (223)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++.++|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46899999999999999999999999997 48888854

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=96.49  E-value=0.012  Score=49.44  Aligned_cols=93  Identities=17%  Similarity=0.090  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhC-CeecCCHH-hh--cccCCEEEEcCCCChhhhh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG-AKFEEDLD-TM--LPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g-~~~~~~l~-e~--l~~aDvVv~~~p~~~~t~~  108 (223)
                      -.|.++.|.|.|.+|..+++.++..|.+ |++.+++....+.++++| ........ +.  -...|+++.++....    
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----  171 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----  171 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----
Confidence            3688999999999999999999999998 988887654444555555 22111111 11  135898888765221    


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                       .....++.++++..+++++-.+
T Consensus       172 -~~~~~~~~l~~~g~~~~~g~~~  193 (277)
T cd08255         172 -ALETALRLLRDRGRVVLVGWYG  193 (277)
T ss_pred             -HHHHHHHHhcCCcEEEEEeccC
Confidence             2256778899999998886543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.49  E-value=0.0057  Score=46.93  Aligned_cols=85  Identities=15%  Similarity=0.225  Sum_probs=49.4

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM  118 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~m  118 (223)
                      +-|+|.|.+++++++.++..|++|+++|+.+.                  .++.++-+ .+.+    ...+  .+.+ .+
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e------------------~~~~~~~~-~~~~----~~~~--~~~~-~~   54 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE------------------RFPEADEV-ICIP----PDDI--LEDL-EI   54 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC------------------C-TTSSEE-ECSH----HHHH--HHHC--S
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc------------------ccCCCCcc-EecC----hHHH--Hhcc-CC
Confidence            46899999999999999999999999998642                  01233433 2322    1111  1111 35


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408          119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (223)
Q Consensus       119 k~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~  151 (223)
                      .++..+| ++++.-.|...|..+|+. ...+.+
T Consensus        55 ~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG   85 (136)
T PF13478_consen   55 DPNTAVV-MTHDHELDAEALEAALAS-PARYIG   85 (136)
T ss_dssp             -TT-EEE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred             CCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence            5566655 788888888888888877 344344

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.46  E-value=0.01  Score=52.52  Aligned_cols=88  Identities=22%  Similarity=0.291  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCC---eEEEEcCCCCChhHHHhhCCe-ecCCH-HhhcccCCEEEEcCCCChhhhh
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETGAK-FEEDL-DTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~g~~-~~~~l-~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      ...+|+|+|. |.+|+.+.+.|...++   ++.++.......+.....+.. .+.++ .+.+.++|+|++++|...    
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~----   81 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI----   81 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH----
Confidence            4678999995 9999999999987554   343332211111111111111 11111 234578999999999332    


Q ss_pred             cccHHHHhc-CCCCcEEEEcC
Q 027408          109 MFDKDRIAK-MKKGVLIVNNA  128 (223)
Q Consensus       109 ~i~~~~~~~-mk~ga~ivn~s  128 (223)
                        ..+.... .+.|+.+||.|
T Consensus        82 --s~~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         82 --SKKFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             --HHHHHHHHHhCCCEEEECC
Confidence              2233222 25688999998

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=96.44  E-value=0.011  Score=51.78  Aligned_cols=89  Identities=20%  Similarity=0.200  Sum_probs=59.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec---C--CHHh---hcc--cCC-EEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE---E--DLDT---MLP--KCD-IVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~---~--~l~e---~l~--~aD-vVv~~~p~  102 (223)
                      .|++|.|.|.|.+|...++.++..|.+ |++.+++....+.++++|+..+   .  +.++   +..  ..| +|+-++..
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~  239 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGV  239 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCC
Confidence            589999999999999999999999997 6788876655555566665321   1  1122   221  346 66666652


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                       +.    .-.+.++.++++..++.++
T Consensus       240 -~~----~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        240 -PQ----TVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             -HH----HHHHHHHHhhcCCEEEEEc
Confidence             11    1255677888888887775

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.44  E-value=0.012  Score=51.01  Aligned_cols=89  Identities=21%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec------CCHHhhc-----ccCCEEEEcCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~e~l-----~~aDvVv~~~p~  102 (223)
                      .|.+|.|.| .|.+|...++.++..|.+|++.+++....+..+++|+..+      ++..+.+     ...|+|+-++..
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~  217 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG  217 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence            588999999 5999999999999999999988876544555566665321      1232222     136888777651


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                          . .+ ...++.++++..+++.+.
T Consensus       218 ----~-~~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       218 ----E-FS-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             ----H-HH-HHHHHHhCcCcEEEEecc
Confidence                1 12 567788888888888764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK08374 homoserine dehydrogenase; Provisional

Probab=96.42  E-value=0.012  Score=51.96  Aligned_cols=107  Identities=17%  Similarity=0.264  Sum_probs=62.5

Q ss_pred             CEEEEEcccHHHHHHHHHHcc--------CC--CeEE-EEcCCCC-------ChhHH----HhhC-Cee--------cCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP--------FN--CNLL-YHDRVKM-------DPQLE----KETG-AKF--------EED   85 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~--------~G--~~V~-~~d~~~~-------~~~~~----~~~g-~~~--------~~~   85 (223)
                      .+|+|+|+|++|+.+++.+..        +|  .+|. +.|++..       ..+..    +..+ ...        ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            489999999999999998865        56  4544 3354311       11110    0111 000        116


Q ss_pred             HHhhc--ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCcc
Q 027408           86 LDTML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  148 (223)
Q Consensus        86 l~e~l--~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g~i~  148 (223)
                      +++++  .++|+|+-+++..+     ...-..+.++.|..+|-...|.+ ...+.|.+..++....
T Consensus        83 ~~ell~~~~~DVvVd~t~~~~-----a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~  143 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDKN-----AHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP  143 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcHH-----HHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence            77877  47999998886221     22334455677888887776644 3555666665554443

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=96.42  E-value=0.013  Score=50.53  Aligned_cols=90  Identities=18%  Similarity=0.255  Sum_probs=61.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-CC----H-HhhcccCCEEEEcCCCChhhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-ED----L-DTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~----l-~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .|.+|.|.|.|.+|+.+++.++..|.+|++.+++....+...+.+.... ..    . .......|+++-++...     
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-----  236 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSG-----  236 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcH-----
Confidence            5789999999999999999999999999999887644444444554211 11    1 11123578888776521     


Q ss_pred             cccHHHHhcCCCCcEEEEcCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ....+.+..++++..+++++.
T Consensus       237 ~~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         237 AAAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             HHHHHHHHhcccCCEEEEECC
Confidence            123566788888888888764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.42  E-value=0.024  Score=51.60  Aligned_cols=97  Identities=13%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             ccCCCCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcC
Q 027408           31 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        31 ~~~l~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      +..+.|++|+|+|+          ..-+..+++.|...|.+|.+|||.-...+..+.++.... + ...++.+|+|++++
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~-~-~~~~~~ad~vvi~t  386 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPV-S-EVKSSHYDAIIVAV  386 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccc-h-hhhhcCCCEEEEcc
Confidence            34689999999996          456889999999999999999996322222222332211 1 22467899999998


Q ss_pred             CCChhhhhcccHHHH-hcCCCCcEEEEcCCCCc
Q 027408          101 PLTEKTRGMFDKDRI-AKMKKGVLIVNNARGAI  132 (223)
Q Consensus       101 p~~~~t~~~i~~~~~-~~mk~ga~ivn~srg~~  132 (223)
                      .-. +... ++-+.+ +.|+...+|+|. |+-+
T Consensus       387 ~h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        387 GHQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             CCH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence            732 2222 333333 445544578874 5443

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.41  E-value=0.016  Score=50.46  Aligned_cols=48  Identities=29%  Similarity=0.364  Sum_probs=42.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCee
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKF   82 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~   82 (223)
                      .|.++.|+|+|.||-.....++++|+ +|++.|..+...+.++++|+..
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~  217 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV  217 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence            58999999999999999999999998 5999998887788888888754

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=96.41  E-value=0.016  Score=50.42  Aligned_cols=64  Identities=23%  Similarity=0.348  Sum_probs=43.8

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCC--CChh-----HHH---hhC----CeecCCHHhhcccCCEEEEc
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVK--MDPQ-----LEK---ETG----AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~--~~~~-----~~~---~~g----~~~~~~l~e~l~~aDvVv~~   99 (223)
                      ++|+|+|. |.+|..++..+...|.  +|..+|+..  ...+     ...   ..+    +....+.+ .+++||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence            58999998 9999999999988776  499999843  1110     111   011    11223444 48999999999


Q ss_pred             CC
Q 027408          100 TP  101 (223)
Q Consensus       100 ~p  101 (223)
                      ..
T Consensus        80 ag   81 (309)
T cd05294          80 AG   81 (309)
T ss_pred             cC
Confidence            75

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.41  E-value=0.0056  Score=49.26  Aligned_cols=65  Identities=20%  Similarity=0.242  Sum_probs=45.0

Q ss_pred             CEEEEEcccHHHHHHHHHH--ccCCCeE-EEEcCCCCChh-HHHhhCCeecCCHHhhcc--cCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRL--KPFNCNL-LYHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l--~~~G~~V-~~~d~~~~~~~-~~~~~g~~~~~~l~e~l~--~aDvVv~~~p  101 (223)
                      -++.|||.|++|++++..-  +..|+++ .++|..+...- .....-+...+++++.++  +.|+.++|+|
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVP  155 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVP  155 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEcc
Confidence            3589999999999999754  4678985 48887652110 111122334567777776  6889999999

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=96.40  E-value=0.017  Score=50.80  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=24.2

Q ss_pred             EEEEEcccHHHHHHHHHHccC----CCeEEEEcC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPF----NCNLLYHDR   67 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~----G~~V~~~d~   67 (223)
                      +|||+|+|+||+.+.+.+...    +++|...+.
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd   34 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE   34 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            589999999999999998754    367766653

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=96.40  E-value=0.0093  Score=46.36  Aligned_cols=87  Identities=22%  Similarity=0.310  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      ..|++|++||+=   +.+++.++..+.++.++|+++...  ....+.......++++++||+|+++-.  .-..+-+ ..
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~   80 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNI--GEEPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DD   80 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG----SSCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCC--CCCCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HH
Confidence            579999999962   137788888899999999976221  111111134567889999999988764  1011111 56


Q ss_pred             HHhcCCCCcEEEEcC
Q 027408          114 RIAKMKKGVLIVNNA  128 (223)
Q Consensus       114 ~~~~mk~ga~ivn~s  128 (223)
                      .++..++++.++=.+
T Consensus        81 iL~~~~~~~~vil~G   95 (147)
T PF04016_consen   81 ILELARNAREVILYG   95 (147)
T ss_dssp             HHHHTTTSSEEEEES
T ss_pred             HHHhCccCCeEEEEe
Confidence            777777676666554

; PDB: 3L5O_B 3NPG_A.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.39  E-value=0.0059  Score=54.58  Aligned_cols=85  Identities=19%  Similarity=0.188  Sum_probs=57.8

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------hH----HHhhC----Cee-
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------QL----EKETG----AKF-   82 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~~----~~~~g----~~~-   82 (223)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++.++|......                   +.    ..+.+    +.. 
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            46899999999999999999999999997 688888752100                   00    00111    111 


Q ss_pred             ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK  117 (223)
Q Consensus        83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~  117 (223)
                         .  .+.+++++++|+|+.|+- +.+++.++++...+.
T Consensus       117 ~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~  155 (370)
T PRK05600        117 RERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEIT  155 (370)
T ss_pred             eeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence               1  245578889998876664 566777777655544

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.013  Score=49.10  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+.++++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA   40 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999996 9999999999999999999999875

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.39  E-value=0.013  Score=53.85  Aligned_cols=109  Identities=17%  Similarity=0.246  Sum_probs=64.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-CCeec-CCHHhhcccCCEEEEcC--C-CChhhh--
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFE-EDLDTMLPKCDIVVVNT--P-LTEKTR--  107 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-g~~~~-~~l~e~l~~aDvVv~~~--p-~~~~t~--  107 (223)
                      .|++|+|+|+|.-|.+.|+.|+. |.+|+++|..........+. ..... ....+.+.++|+||..-  | .+|...  
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a   83 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence            58899999999999999999995 99999999543222211111 11111 11234567899887753  2 222211  


Q ss_pred             -----hcccHH-HH-hcCCCC-cEEEEcCCCCccCHHHHHHHHHh
Q 027408          108 -----GMFDKD-RI-AKMKKG-VLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       108 -----~~i~~~-~~-~~mk~g-a~ivn~srg~~vd~~al~~~L~~  144 (223)
                           .++.+- .+ ..+++. .+-|--+.|+.-...-+...|+.
T Consensus        84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~  128 (454)
T PRK01368         84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS  128 (454)
T ss_pred             HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence                 123222 22 333332 34455556887777777777776

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.38  E-value=0.011  Score=53.88  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHh--hCCeecC--CHHhhcccCCEEEEcC--C-CChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFEE--DLDTMLPKCDIVVVNT--P-LTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~~--~l~e~l~~aDvVv~~~--p-~~~~  105 (223)
                      .+-+|+|+|+|.+|.++|+.|...|++|.++|......  +..++  .|+....  ...+.+.++|+||..-  | .+|.
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~   84 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA   84 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence            45589999999999999999999999999999754221  11222  2554421  1234567899887753  2 2232


Q ss_pred             hh-------hcccH-HHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          106 TR-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       106 t~-------~~i~~-~~~~~-mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ..       .++.+ +.+.. ++...+-|--+.|+--...-+...|+.
T Consensus        85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~  132 (448)
T PRK03803         85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA  132 (448)
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            21       12222 23322 333344455667777766667777765

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.38  E-value=0.0066  Score=53.96  Aligned_cols=85  Identities=15%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------hH-HH---hh--C--Cee-
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------QL-EK---ET--G--AKF-   82 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~~-~~---~~--g--~~~-   82 (223)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++.++|......                   +. ++   +.  .  +.. 
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~  103 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS  103 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence            46899999999999999999999999997 588888653100                   00 00   11  1  111 


Q ss_pred             ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK  117 (223)
Q Consensus        83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~  117 (223)
                         .  ++..++++++|+|+.|+- +..++.+++....+.
T Consensus       104 ~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~  142 (355)
T PRK05597        104 VRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARL  142 (355)
T ss_pred             EeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence               1  233567888998877764 556666666554443

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=96.36  E-value=0.029  Score=52.19  Aligned_cols=98  Identities=18%  Similarity=0.218  Sum_probs=69.7

Q ss_pred             ccCCCCCEEEEEcc---cHHHHHHHHHHccCC-CeEEEEcCCCC--ChhH---HHhhC--CeecCCHHhhcccCCEE--E
Q 027408           31 AYDLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIV--V   97 (223)
Q Consensus        31 ~~~l~g~~igIiG~---G~iG~~iA~~l~~~G-~~V~~~d~~~~--~~~~---~~~~g--~~~~~~l~e~l~~aDvV--v   97 (223)
                      +..+.|++|++||-   +++.++++..+..+| ++|.+..|...  +.+.   +++.|  +...++++++++++|+.  .
T Consensus       169 G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw  248 (525)
T PRK13376        169 NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIW  248 (525)
T ss_pred             CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceE
Confidence            33589999999997   699999999999998 99999988542  2222   22334  44568999999999952  2


Q ss_pred             E-------cCCCC--h---h--hhhcccHHHHhcCCCCcEEEEcC
Q 027408           98 V-------NTPLT--E---K--TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        98 ~-------~~p~~--~---~--t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .       ..+..  +   .  -...++++.++.+++++++..+.
T Consensus       249 ~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        249 YFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             EEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence            2       22211  0   1  13457889999999999988876

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=96.33  E-value=0.023  Score=49.64  Aligned_cols=90  Identities=21%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCH----Hhhcc--cCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~e~l~--~aDvVv~~~p~  102 (223)
                      .|.+|.|.|.|.+|...++.++..|+ +|++.+++....+.+.++|+...     .++    .++..  ..|+|+-+...
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~  251 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV  251 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 78888876544455555554321     111    22222  38999888752


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ..     ...+.++.++++..++.++.
T Consensus       252 ~~-----~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         252 QA-----TLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             HH-----HHHHHHHhccCCCEEEEEcc
Confidence            11     12566778888888888764

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK05442 malate dehydrogenase; Provisional

Probab=96.33  E-value=0.053  Score=47.68  Aligned_cols=65  Identities=20%  Similarity=0.273  Sum_probs=43.4

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCCCC---h----hHHHh-----hCCeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---P----QLEKE-----TGAKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~---~----~~~~~-----~g~~~~~~l~e~l~~aDvV   96 (223)
                      ++|+|||. |.+|..+|..+...+.       ++..+|.++..   .    +....     .+.....+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999998765433       79999985321   1    11111     0122234555788999999


Q ss_pred             EEcCC
Q 027408           97 VVNTP  101 (223)
Q Consensus        97 v~~~p  101 (223)
                      +++.-
T Consensus        85 VitaG   89 (326)
T PRK05442         85 LLVGA   89 (326)
T ss_pred             EEeCC
Confidence            99764

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=96.33  E-value=0.015  Score=51.36  Aligned_cols=91  Identities=19%  Similarity=0.129  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-C------CHHhhc-----ccCCEEEEcC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E------DLDTML-----PKCDIVVVNT  100 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~------~l~e~l-----~~aDvVv~~~  100 (223)
                      ..|.+|.|+|.|.+|...++.++.+|. +|++.+++....+.++++|+..+ .      ++.+.+     ...|+|+-++
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~  262 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT  262 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence            358999999999999999999999999 69899886655555566665211 0      011111     2367777666


Q ss_pred             CCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408          101 PLTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~g-a~ivn~sr  129 (223)
                      ....     .-.+.+..++++ ..++.++.
T Consensus       263 g~~~-----~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         263 GNAD-----LMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CChH-----HHHHHHHhcccCCCEEEEEcC
Confidence            4211     124556667664 66666553

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.33  E-value=0.012  Score=52.64  Aligned_cols=37  Identities=22%  Similarity=0.132  Sum_probs=33.6

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~   68 (223)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++.++|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            36899999999999999999999999998 58899875

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.32  E-value=0.023  Score=49.54  Aligned_cols=75  Identities=16%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             EEEEEcc-cHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           38 TVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        38 ~igIiG~-G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      +|+|+|. |-+|..+.+.|... .+++........         ... .+.+++++++|++++|+|....      .+..
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~~-~~~~~~~~~~D~vFlalp~~~s------~~~~   66 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KDA-AERAKLLNAADVAILCLPDDAA------REAV   66 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cCc-CCHhHhhcCCCEEEECCCHHHH------HHHH
Confidence            7999995 99999999999876 456655432221         111 2456777899999999993322      2222


Q ss_pred             hc-CCCCcEEEEcC
Q 027408          116 AK-MKKGVLIVNNA  128 (223)
Q Consensus       116 ~~-mk~ga~ivn~s  128 (223)
                      .. ...|+.+||.|
T Consensus        67 ~~~~~~g~~VIDlS   80 (310)
T TIGR01851        67 SLVDNPNTCIIDAS   80 (310)
T ss_pred             HHHHhCCCEEEECC
Confidence            22 24688899988

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=96.32  E-value=0.018  Score=50.83  Aligned_cols=90  Identities=14%  Similarity=0.077  Sum_probs=58.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecC-------CHHhhc----c-cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDTML----P-KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~e~l----~-~aDvVv~~~p  101 (223)
                      .|.+|.|.|.|.+|...++.++.+|+ +|++.+++....+.++++|+..+.       ++.+.+    . ..|+++-++.
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G  266 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTG  266 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            58999999999999999999999999 799998876556666666653211       111111    1 3677776654


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr  129 (223)
                      ...     .-...+..++++ ..++.++.
T Consensus       267 ~~~-----~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         267 NID-----AMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             ChH-----HHHHHHHHhhcCCCEEEEECc
Confidence            111     113445666664 66666553

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.32  E-value=0.055  Score=48.69  Aligned_cols=156  Identities=15%  Similarity=0.176  Sum_probs=99.2

Q ss_pred             cccCCCCCEEEEEcccHHHHHHHHHHccCCC---eEEEEcCCCC----ChhH-HHhhCC-------eecCCHHhhcccCC
Q 027408           30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKM----DPQL-EKETGA-------KFEEDLDTMLPKCD   94 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d~~~~----~~~~-~~~~g~-------~~~~~l~e~l~~aD   94 (223)
                      .++.|+..+|.+.|.|.-|-.+++.+.+.|.   +|+.+|+...    ..+. ......       ..... ++.+..+|
T Consensus       193 ~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~ad  271 (432)
T COG0281         193 TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGAD  271 (432)
T ss_pred             hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCC
Confidence            3578999999999999999999999999998   5999998631    1110 000000       01111 45788999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhC-CccEEEeeCCCCCCCCCCCCccCCCCe
Q 027408           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQ  172 (223)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g-~i~~a~lDv~~~ep~~~~~~l~~~~nv  172 (223)
                      +++-+.-     .+.+.++.++.|.++.+|.=.|.... +..+++.++ ..| .|.+      ..-|.   .|- +..|+
T Consensus       272 v~iG~S~-----~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~-~~~aaiva------TGrsd---~Pn-QvNNv  335 (432)
T COG0281         272 VLIGVSG-----VGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEW-GDGAAIVA------TGRSD---YPN-QVNNV  335 (432)
T ss_pred             EEEEcCC-----CCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhc-CCCCEEEE------eCCCC---Ccc-cccce
Confidence            8876654     38899999999999999988887663 122222221 111 2321      11222   222 57899


Q ss_pred             EEccCCCCCc-----HHHHHHHHHHHHHHHHHHHc
Q 027408          173 AMTPHVSGTT-----IDAQLRYAAGVKDMLDRYFK  202 (223)
Q Consensus       173 ~~tPH~a~~t-----~~~~~~~~~~~~~~i~~~~~  202 (223)
                      ++-|-+.-..     +.-.+.|...+++.|.++.+
T Consensus       336 L~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~  370 (432)
T COG0281         336 LIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAR  370 (432)
T ss_pred             eEcchhhhhhHhhccccCCHHHHHHHHHHHHhhcc
Confidence            9999876432     23345566677777777754

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=96.30  E-value=0.011  Score=55.85  Aligned_cols=70  Identities=19%  Similarity=0.337  Sum_probs=49.3

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhhCCeecCC---HHhhcccCCEEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEED---LDTMLPKCDIVVVNTP  101 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~~~---l~e~l~~aDvVv~~~p  101 (223)
                      .....|+|||||-|..|+.+++.++.+|++|+++|+++..+..  +...-+..+.+   +.++++++|+|.....
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            3578999999999999999999999999999999987632221  11100111234   4456678999876543

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.28  E-value=0.062  Score=44.94  Aligned_cols=125  Identities=17%  Similarity=0.137  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-------------------H-H---HhhC----Cee--
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-------------------L-E---KETG----AKF--   82 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-------------------~-~---~~~g----~~~--   82 (223)
                      .|.+++|.|+|+|.+|..+|+.|...|. +++.+|.......                   . +   .+.+    +..  
T Consensus         8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~   87 (231)
T cd00755           8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE   87 (231)
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence            5889999999999999999999998887 6888886431110                   0 0   0111    111  


Q ss_pred             --c--CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCH-----------------HHHHH
Q 027408           83 --E--EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT-----------------QAVVD  140 (223)
Q Consensus        83 --~--~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~-----------------~al~~  140 (223)
                        +  ++.++++ .+.|+|+.|+-. ...+..+++...+.  .-.+|...+.|.-.|.                 ..+-+
T Consensus        88 ~~i~~~~~~~l~~~~~D~VvdaiD~-~~~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~  164 (231)
T cd00755          88 EFLTPDNSEDLLGGDPDFVVDAIDS-IRAKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRK  164 (231)
T ss_pred             eecCHhHHHHHhcCCCCEEEEcCCC-HHHHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHH
Confidence              1  2455666 368999888753 33333343333222  2234445555554432                 23556


Q ss_pred             HHHhCCccEEEeeCCCCCCC
Q 027408          141 ACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus       141 ~L~~g~i~~a~lDv~~~ep~  160 (223)
                      .|++.++..-.-=||..|++
T Consensus       165 ~Lrk~~~~~~~~~v~S~E~~  184 (231)
T cd00755         165 RLRKRGIFFGVPVVYSTEPP  184 (231)
T ss_pred             HHHHcCCCCCeEEEeCCCCC
Confidence            67877776223335777753

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=96.27  E-value=0.055  Score=46.73  Aligned_cols=94  Identities=17%  Similarity=0.274  Sum_probs=67.8

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCCh--h---H----HHhhC--CeecCCHHhhcccCCEEEEcCC
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--Q---L----EKETG--AKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~---~----~~~~g--~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      |.|+|++.+|- .+++.++......+|+++.+..|..-.+  +   .    +++.|  +....++++.++.+|+|..-+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            89999999995 5899999999999999999988864211  1   1    22223  4566799999999999987654


Q ss_pred             CC--hhhh-----------hcccHHHHhcCCCCcEEEEc
Q 027408          102 LT--EKTR-----------GMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       102 ~~--~~t~-----------~~i~~~~~~~mk~ga~ivn~  127 (223)
                      ..  ++.+           .-++.+.++.-++++++..|
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            21  1111           34567777777777777766

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.26  E-value=0.013  Score=47.69  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=33.7

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~   69 (223)
                      ..|..++|.|+|+|.+|..+|+.|...|.. +..+|...
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            468999999999999999999999999985 88888653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.26  E-value=0.018  Score=49.59  Aligned_cols=90  Identities=22%  Similarity=0.317  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhh-cccCCEEEEcCCCChhhhhcccH
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~-l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ..|.++.|.|.|.+|..+++.++..|.+|++.+++....+.++++|+....+.++. -+..|+++.+.+..     ....
T Consensus       166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~-----~~~~  240 (329)
T cd08298         166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG-----ALVP  240 (329)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcH-----HHHH
Confidence            35789999999999999999999999999988876644555556665332122211 13468887765521     1236


Q ss_pred             HHHhcCCCCcEEEEcC
Q 027408          113 DRIAKMKKGVLIVNNA  128 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~s  128 (223)
                      +.++.++++..++..+
T Consensus       241 ~~~~~l~~~G~~v~~g  256 (329)
T cd08298         241 AALRAVKKGGRVVLAG  256 (329)
T ss_pred             HHHHHhhcCCEEEEEc
Confidence            6788888888887664

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.26  E-value=0.025  Score=51.35  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=66.8

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhhCCeec--CCHHhhcccCCEEEEcCCCChhhhh-
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRG-  108 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t~~-  108 (223)
                      ++.+++|.|+|+|..|.+.++.|+..|.+|.++|........ ....|+...  ....+.++..|+||.. |.-+.... 
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~   81 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPS   81 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHH
Confidence            457889999999999999999999999999999975432211 111254432  1223456778977654 32221111 


Q ss_pred             ----------cccH-HHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          109 ----------MFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       109 ----------~i~~-~~~~~m-k~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                                ++.+ +.+..+ +...+-|--+.|+--...-|...|+.
T Consensus        82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence                      2222 333332 22234455567777766667777765

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.25  E-value=0.14  Score=49.71  Aligned_cols=156  Identities=12%  Similarity=0.125  Sum_probs=98.6

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC---eEEEEcCCCC----C----hhHHHhhC-CeecCCHHhhcccCCEEEE
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKM----D----PQLEKETG-AKFEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d~~~~----~----~~~~~~~g-~~~~~~l~e~l~~aDvVv~   98 (223)
                      ++.+...+|.|.|.|.-|-.+|+.+...|.   +++.+|+...    .    ......+- -....+|.|+++.+|+++=
T Consensus       180 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG  259 (752)
T PRK07232        180 GKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLG  259 (752)
T ss_pred             CCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEE
Confidence            567899999999999999999999998888   6999997631    1    11111110 0223589999999998765


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccC
Q 027408           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH  177 (223)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH  177 (223)
                      . +    +.+++.++.++.|.+..+|.=.|....- +.+..+++ ..|.|.+-+         ..+.| -+..|+++-|-
T Consensus       260 ~-s----~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atG---------rs~~p-nQ~NN~~~FPg  323 (752)
T PRK07232        260 L-S----AAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAV-RPDAIIATG---------RSDYP-NQVNNVLCFPY  323 (752)
T ss_pred             c-C----CCCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHh-cCCEEEEEC---------CcCCC-Ccccceeecch
Confidence            4 3    1478999999999999999999887752 22222222 223344332         11111 23567888886


Q ss_pred             CCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 027408          178 VSGT-----TIDAQLRYAAGVKDMLDRYFK  202 (223)
Q Consensus       178 ~a~~-----t~~~~~~~~~~~~~~i~~~~~  202 (223)
                      ++-.     ...-.+.|...+++.|.+...
T Consensus       324 i~~g~l~~~a~~i~~~m~~aaa~ala~~~~  353 (752)
T PRK07232        324 IFRGALDVGATTINEEMKLAAVRAIAELAR  353 (752)
T ss_pred             hhHHHHHcCCccCCHHHHHHHHHHHHhhcc
Confidence            5522     222234455555555555443

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.24  E-value=0.015  Score=55.63  Aligned_cols=69  Identities=23%  Similarity=0.264  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhhCCeec--------C
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E   84 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~   84 (223)
                      -.|++|+|||.|..|.+.|..|+..|++|+++++....                     .+..+.+|+...        .
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            47999999999999999999999999999999975421                     122334455421        1


Q ss_pred             CHHhhcccCCEEEEcCCC
Q 027408           85 DLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        85 ~l~e~l~~aDvVv~~~p~  102 (223)
                      +++++..+.|.|++++..
T Consensus       405 ~~~~~~~~~DavilAtGa  422 (654)
T PRK12769        405 SLESLLEDYDAVFVGVGT  422 (654)
T ss_pred             CHHHHHhcCCEEEEeCCC
Confidence            455666789999998753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.23  E-value=0.014  Score=48.06  Aligned_cols=37  Identities=27%  Similarity=0.399  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ++.++++.|+|. |.||+.+++.|...|++|++++|++
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~   39 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE   39 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468899999995 9999999999999999999999976

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=96.22  E-value=0.028  Score=49.55  Aligned_cols=91  Identities=13%  Similarity=0.141  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhhCCeec---CC---HHhhcccCCEEEEcCCCChhh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~---~~---l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      -.|.++.|.|.|.+|...++.++..|.+|++.+++.... ...+++|+...   .+   +.+.....|+++-+++...  
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~--  256 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFH--  256 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchH--
Confidence            368999999999999999999999999988887654222 22334565321   11   2223345799988876221  


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                         .....++.++++..++.++.
T Consensus       257 ---~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        257 ---PLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ---HHHHHHHHhccCCEEEEECC
Confidence               12556788899998888874

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=96.20  E-value=0.036  Score=50.24  Aligned_cols=108  Identities=13%  Similarity=0.142  Sum_probs=67.8

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--h---HHH-hhCCeec--CCHHhhcccCCEEEEcC--C-CChhh
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--Q---LEK-ETGAKFE--EDLDTMLPKCDIVVVNT--P-LTEKT  106 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~---~~~-~~g~~~~--~~l~e~l~~aDvVv~~~--p-~~~~t  106 (223)
                      +|.|||+|.+|.++|+.|+..|++|.++|......  .   ..+ ..|+...  .+ .+.+.++|+||...  | .+|..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            47899999999999999999999999999754311  1   112 2365432  23 45567899887754  2 23322


Q ss_pred             h-------hcccHH-HH-hcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408          107 R-------GMFDKD-RI-AKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       107 ~-------~~i~~~-~~-~~mk~ga~ivn~srg~~vd~~al~~~L~~g~  146 (223)
                      .       .++.+. .+ ..++...+-|.-+.|+.-...-+...|+...
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            1       122222 22 3333334556667788777777777777643

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=96.19  E-value=0.0096  Score=52.55  Aligned_cols=62  Identities=21%  Similarity=0.400  Sum_probs=43.7

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhhCCeecCC---HHhhcccCCEEEEc
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEED---LDTMLPKCDIVVVN   99 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~~~---l~e~l~~aDvVv~~   99 (223)
                      +|||||.|..|+.+++.++.+|++|+++|+++.....  +...-+....+   +.++++.+|+|...
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e   67 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE   67 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence            5899999999999999999999999999987633321  11100111234   55677889987543

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=96.19  E-value=0.0098  Score=50.02  Aligned_cols=81  Identities=15%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             CeEEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHH
Q 027408           60 CNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (223)
Q Consensus        60 ~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al  138 (223)
                      .+|.+++|+.... +...++++....+..++++++|+|++|++  |....-+..+.-..++++.+||+++-|-  ..+.|
T Consensus        10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~~~~~~~~~ivS~~agi--~~~~l   85 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELKSEKGKDKLLISIAAGV--TLEKL   85 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHhhhccCCCEEEEecCCC--CHHHH
Confidence            5799999976332 33345677767788899999999999999  4332222233333456678999998764  55667


Q ss_pred             HHHHHh
Q 027408          139 VDACSS  144 (223)
Q Consensus       139 ~~~L~~  144 (223)
                      .+.+..
T Consensus        86 ~~~~~~   91 (245)
T TIGR00112        86 SQLLGG   91 (245)
T ss_pred             HHHcCC
Confidence            666654

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=96.19  E-value=0.019  Score=50.46  Aligned_cols=90  Identities=18%  Similarity=0.226  Sum_probs=60.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec---C--C-------HHhhc--ccCCEEEEc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E--D-------LDTML--PKCDIVVVN   99 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~--~-------l~e~l--~~aDvVv~~   99 (223)
                      .|++|.|.|.|.+|..+++.++.+|. +|++.+++....+..+++|+..+   .  +       +.++.  ...|+|+-+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~  256 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA  256 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence            78999999999999999999999999 89888876544445555564211   1  1       11222  246888777


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .....     .....+..++++..++.++.
T Consensus       257 ~g~~~-----~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         257 SGHPA-----AVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             CCChH-----HHHHHHHHhccCCEEEEEcC
Confidence            64211     12456677788777777763

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.18  E-value=0.0085  Score=49.41  Aligned_cols=65  Identities=23%  Similarity=0.229  Sum_probs=48.8

Q ss_pred             EEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhhCCee-------cCCHHhhcccCCEEEEcCCCC
Q 027408           39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        39 igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      |.|+|. |.+|+.+++.|...+++|.+.-|+....  +..+..|++.       .+++.++++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            689995 9999999999999999999998876221  2223445432       245667789999999999943

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=96.16  E-value=0.031  Score=48.43  Aligned_cols=92  Identities=22%  Similarity=0.247  Sum_probs=63.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCeecC--------CHHhhcc--cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEE--------DLDTMLP--KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~--------~l~e~l~--~aDvVv~~~p~~  103 (223)
                      .|++|.|.|.|.+|..+++.++..| .+|++.++++...+..+++|+....        .+.++..  ..|+++-+....
T Consensus       167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~  246 (340)
T cd05284         167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD  246 (340)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence            5889999999999999999999998 8998888765444455555642211        1222332  478888776621


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +     ...+.+..++++..++.++..+
T Consensus       247 ~-----~~~~~~~~l~~~g~~i~~g~~~  269 (340)
T cd05284         247 E-----TLALAAKLLAKGGRYVIVGYGG  269 (340)
T ss_pred             H-----HHHHHHHHhhcCCEEEEEcCCC
Confidence            1     2356677788888888876544

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.15  E-value=0.016  Score=50.52  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=42.9

Q ss_pred             EEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhh----------CCeecCCHHhhcccCCEEEEcCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET----------GAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~----------g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ||+|||.|.+|..+|..+...+.  ++..+|.+....+ .+.++          .+....+--+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            58999999999999998866554  6999998653221 11111          11111222467889999999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08293 PTGR2 Prostaglandin reductase

Probab=96.13  E-value=0.023  Score=49.39  Aligned_cols=87  Identities=21%  Similarity=0.192  Sum_probs=59.0

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-hCCeec-----CCHHhhc-----ccCCEEEEcCCC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTML-----PKCDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~-----~~l~e~l-----~~aDvVv~~~p~  102 (223)
                      |.+|.|.|. |.+|...++.++.+|+ +|++.+++....+...+ +|+..+     .++.+.+     ...|+|+-++..
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            489999998 9999999999999999 79988876533333333 565321     1232222     247888877652


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                       +    .+ .+.++.++++..++.++
T Consensus       235 -~----~~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         235 -E----IS-DTVISQMNENSHIILCG  254 (345)
T ss_pred             -H----HH-HHHHHHhccCCEEEEEe
Confidence             1    12 56778888888888775

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PLN02827 Alcohol dehydrogenase-like

Probab=96.13  E-value=0.023  Score=50.63  Aligned_cols=90  Identities=17%  Similarity=0.127  Sum_probs=60.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-C------CHHhhc----c-cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E------DLDTML----P-KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~------~l~e~l----~-~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|..+++.++..|.+ |++.+++....+.++++|+..+ +      +..+.+    . ..|+|+-++.
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G  272 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG  272 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence            589999999999999999999999985 7788876655566666675321 1      112211    1 4688877765


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr  129 (223)
                      ..+     .....+..++++ ..++.++-
T Consensus       273 ~~~-----~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        273 DTG-----IATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             ChH-----HHHHHHHhhccCCCEEEEECC
Confidence            211     114556777776 77766653

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.13  E-value=0.026  Score=49.26  Aligned_cols=76  Identities=18%  Similarity=0.265  Sum_probs=50.5

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      .+|+|+| .|.+|+.+.+.|.... .++.....+... .      .   .+.++.++++|+|++|+|...      ..+.
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~~~~DvvFlalp~~~------s~~~   66 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELLNAADVAILCLPDDA------AREA   66 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhhcCCCEEEECCCHHH------HHHH
Confidence            5899999 5999999999998765 455544433211 1      1   233456678999999999322      2233


Q ss_pred             HhcC-CCCcEEEEcC
Q 027408          115 IAKM-KKGVLIVNNA  128 (223)
Q Consensus       115 ~~~m-k~ga~ivn~s  128 (223)
                      ...+ +.|..+||.|
T Consensus        67 ~~~~~~~g~~VIDlS   81 (313)
T PRK11863         67 VALIDNPATRVIDAS   81 (313)
T ss_pred             HHHHHhCCCEEEECC
Confidence            3322 5688899988

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=96.12  E-value=0.02  Score=50.58  Aligned_cols=89  Identities=20%  Similarity=0.174  Sum_probs=58.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec---C----CHHhhc-----ccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E----DLDTML-----PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~----~l~e~l-----~~aDvVv~~~p  101 (223)
                      .|.+|.|.|.|.+|...++.++.+|. +|++.+++....+.++++|+..+   .    ++.+.+     ..+|+|+-++.
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g  265 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG  265 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence            58999999999999999999999999 69999887655556666665321   1    122211     13688877765


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~s  128 (223)
                      ...     ...+.++.++++ ..++.++
T Consensus       266 ~~~-----~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         266 NVK-----VMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             ChH-----HHHHHHHhhccCCCeEEEEc
Confidence            211     124456667664 5666554

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd00704 MDH Malate dehydrogenase

Probab=96.12  E-value=0.044  Score=48.10  Aligned_cols=65  Identities=20%  Similarity=0.192  Sum_probs=43.6

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCC--CChh-----HHHh-----hCCeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVK--MDPQ-----LEKE-----TGAKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~--~~~~-----~~~~-----~g~~~~~~l~e~l~~aDvV   96 (223)
                      .+|+|+|. |.+|..+|..+...|.       ++..+|++.  ...+     ....     .+.....+..+.+++||+|
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence            37999999 9999999998876442       488999864  2111     1110     0111124567889999999


Q ss_pred             EEcCC
Q 027408           97 VVNTP  101 (223)
Q Consensus        97 v~~~p  101 (223)
                      +++.-
T Consensus        81 VitAG   85 (323)
T cd00704          81 ILVGA   85 (323)
T ss_pred             EEeCC
Confidence            98754

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=96.10  E-value=0.034  Score=47.26  Aligned_cols=91  Identities=23%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-----CCH----Hhhc--ccCCEEEEcCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~e~l--~~aDvVv~~~p  101 (223)
                      -.|.+|.|.|.|.+|..+++.++..|++ |++..+++...+....+|+..+     .++    .++.  ...|+++-+..
T Consensus       128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g  207 (312)
T cd08269         128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVG  207 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence            3688999999999999999999999999 8888776533444455554211     122    2222  23788877654


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ..     ......++.|+++..+++++.
T Consensus       208 ~~-----~~~~~~~~~l~~~g~~~~~g~  230 (312)
T cd08269         208 HQ-----WPLDLAGELVAERGRLVIFGY  230 (312)
T ss_pred             CH-----HHHHHHHHHhccCCEEEEEcc
Confidence            11     122556677888888887764

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.09  E-value=0.025  Score=48.67  Aligned_cols=67  Identities=24%  Similarity=0.299  Sum_probs=46.6

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh---h-----CCe-------ecCCHHhhcccCCEEEE
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---T-----GAK-------FEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~---~-----g~~-------~~~~l~e~l~~aDvVv~   98 (223)
                      +|++|.|.| .|-||+.+++.|...|++|.+++++.........   .     .+.       ....++++++++|+|+-
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            478999999 6999999999999999999988876432211110   0     111       12346677888998877


Q ss_pred             cCC
Q 027408           99 NTP  101 (223)
Q Consensus        99 ~~p  101 (223)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            654

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.07  E-value=0.014  Score=47.85  Aligned_cols=37  Identities=19%  Similarity=0.241  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ++++++|.|.|. |.||..+++.+...|++|++.+|+.
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~   39 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE   39 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999996 8899999999999999999999865

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.07  E-value=0.071  Score=40.71  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=28.7

Q ss_pred             EEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (223)
                      +|.|+|+|.+|..+++.|...|. ++.++|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 599998763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07877 hypothetical protein; Provisional

Probab=96.06  E-value=0.02  Score=55.42  Aligned_cols=86  Identities=19%  Similarity=0.252  Sum_probs=59.5

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCCh------------------hHHH----hh----CCee-
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDP------------------QLEK----ET----GAKF-   82 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~------------------~~~~----~~----g~~~-   82 (223)
                      ..|..++|+|+|+| +|+.+|..|...|.  ++..+|......                  +.++    +.    .+.. 
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999999999 99999999998884  677777542100                  0010    01    1111 


Q ss_pred             -----cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCC
Q 027408           83 -----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK  119 (223)
Q Consensus        83 -----~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk  119 (223)
                           .++++++++++|+|+-|+- +-+++.++++...+.-+
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i  222 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI  222 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence                 1367888999999988776 56788888877666533

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=96.05  E-value=0.022  Score=50.09  Aligned_cols=89  Identities=24%  Similarity=0.196  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hhCCeec------CCHHhhcc-----cCCEEEEcC
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTMLP-----KCDIVVVNT  100 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~------~~l~e~l~-----~aDvVv~~~  100 (223)
                      -.|.+|.|.|. |.+|...++.++.+|++|++.+++....+..+ .+|+..+      .++.+.+.     ..|+++-++
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v  236 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV  236 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence            35899999999 99999999999999999988887654444443 4665321      12333221     368887776


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ..  .    .....++.++++..++.++
T Consensus       237 G~--~----~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        237 GG--D----MLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CH--H----HHHHHHHHhccCCEEEEEC
Confidence            51  1    1256677888888887765

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=96.05  E-value=0.049  Score=41.75  Aligned_cols=97  Identities=14%  Similarity=0.264  Sum_probs=68.7

Q ss_pred             HHHHHHccCCCeEEEEcCCC----CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE
Q 027408           50 LLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus        50 ~iA~~l~~~G~~V~~~d~~~----~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      ..++.|...|++|++=.-..    -+.+.-.+.|+...++.++++++||+|+-.-|.        ..+.++.|++|++++
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p--------~~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPP--------SEEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCC--------CHHHHhhcCCCcEEE
Confidence            45677777799987765432    123344556888777778999999999877663        256678899999998


Q ss_pred             EcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408          126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus       126 n~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      ......  ....+++.|.+.++...++|...
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ip  118 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIP  118 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSB
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCc
Confidence            887655  58899999999999988887543

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PRK07411 hypothetical protein; Validated

Probab=96.03  E-value=0.016  Score=52.14  Aligned_cols=88  Identities=23%  Similarity=0.217  Sum_probs=59.0

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh--------------------HHH---hhC----Cee-
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ--------------------LEK---ETG----AKF-   82 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~--------------------~~~---~~g----~~~-   82 (223)
                      ..|..++|+|||+|.+|..+|+.|...|. ++..+|.......                    .++   +.+    +.. 
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            46899999999999999999999999997 4888886531110                    000   111    111 


Q ss_pred             ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCC
Q 027408           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK  120 (223)
Q Consensus        83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~  120 (223)
                         .  .+..+++.++|+|+.|+- +.+++.++++...+.-+|
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence               1  234567889998876654 566777777666655444

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.03  E-value=0.028  Score=47.04  Aligned_cols=88  Identities=22%  Similarity=0.397  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----CCe--e-cCCHHhhcc---cCCEEEE-----
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK--F-EEDLDTMLP---KCDIVVV-----   98 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~--~-~~~l~e~l~---~aDvVv~-----   98 (223)
                      +.|++|.=||||  |..+++.++..|.+|++.|.+++..+.++..    ++.  + ..+.+++..   +.|+|++     
T Consensus        58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            799999999998  4588888889999999999988766666532    222  2 235566665   6898866     


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 027408           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      |+| +|+.   +-....+.+|||.+++-.
T Consensus       136 Hv~-dp~~---~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         136 HVP-DPES---FLRACAKLVKPGGILFLS  160 (243)
T ss_pred             ccC-CHHH---HHHHHHHHcCCCcEEEEe
Confidence            455 2221   335677888998776543

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=96.02  E-value=0.031  Score=48.58  Aligned_cols=91  Identities=18%  Similarity=0.219  Sum_probs=62.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec---C---CHHh----hcc-cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E---DLDT----MLP-KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~---~l~e----~l~-~aDvVv~~~p~~  103 (223)
                      .|++|.|.|.|.+|..+++.++..|.+|++..++....+...++|+..+   .   ++.+    +.. ..|+++-++.. 
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-  243 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI-  243 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC-
Confidence            5789999999999999999999999999988876544455555665211   1   1111    111 47888877652 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      ..    .....+..++++..+++++..
T Consensus       244 ~~----~~~~~~~~l~~~g~~i~~g~~  266 (345)
T cd08260         244 PE----TCRNSVASLRKRGRHVQVGLT  266 (345)
T ss_pred             HH----HHHHHHHHhhcCCEEEEeCCc
Confidence            11    124567788888888887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK12862 malic enzyme; Reviewed

Probab=96.01  E-value=0.11  Score=50.68  Aligned_cols=153  Identities=14%  Similarity=0.137  Sum_probs=99.2

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC---eEEEEcCCC-----CC---h----hHHHhhCCeecCCHHhhcccCCE
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK-----MD---P----QLEKETGAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d~~~-----~~---~----~~~~~~g~~~~~~l~e~l~~aDv   95 (223)
                      ++.|...+|.|.|.|.-|..+|+.+...|.   +++.+|+..     ..   .    ..++..   ...+|.|+++.+|+
T Consensus       188 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~---~~~~l~e~~~~~~v  264 (763)
T PRK12862        188 GKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT---DARTLAEVIEGADV  264 (763)
T ss_pred             CCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc---ccCCHHHHHcCCCE
Confidence            567899999999999999999999998888   699999652     11   1    112221   23589999999998


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEE
Q 027408           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM  174 (223)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~  174 (223)
                      ++=+.-     .+++.++.++.|.+..+|.=.|....- ..+..+++ ..|.|.+-+         ..+.| -+..|+++
T Consensus       265 ~iG~s~-----~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atG---------rs~~p-~Q~NN~~~  328 (763)
T PRK12862        265 FLGLSA-----AGVLKPEMVKKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATG---------RSDYP-NQVNNVLC  328 (763)
T ss_pred             EEEcCC-----CCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEEC---------CcCCC-Ccccceee
Confidence            865432     478999999999999999999887742 22222222 123344332         11112 23567888


Q ss_pred             ccCCCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 027408          175 TPHVSGT-----TIDAQLRYAAGVKDMLDRYFK  202 (223)
Q Consensus       175 tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~  202 (223)
                      -|=++-.     ...-.+.|...+++.|.+...
T Consensus       329 FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~  361 (763)
T PRK12862        329 FPYIFRGALDVGATTINEEMKIAAVRAIAELAR  361 (763)
T ss_pred             ccchhhhHHhcCCeeCCHHHHHHHHHHHHhccc
Confidence            8866532     222344455555566655543

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=96.01  E-value=0.028  Score=48.96  Aligned_cols=88  Identities=24%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-hCCeec------CCHHhhc-----ccCCEEEEcCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE------EDLDTML-----PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~------~~l~e~l-----~~aDvVv~~~p  101 (223)
                      .|.+|.|.|. |.+|..+++.++.+|.+|++..++....+..++ +|+..+      .++.+.+     ...|+|+-++.
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g  230 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG  230 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence            5899999998 999999999999999999888876544444444 564211      1222222     24678877665


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .    .  ...+.++.++++..++.++
T Consensus       231 ~----~--~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         231 G----K--MLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             H----H--HHHHHHHHhccCcEEEEec
Confidence            1    1  1256677788888887775

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK12861 malic enzyme; Reviewed

Probab=95.96  E-value=0.12  Score=50.23  Aligned_cols=154  Identities=14%  Similarity=0.106  Sum_probs=99.7

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC---eEEEEcCCC-----CC---h----hHHHhhCCeecCCHHhhcccCCE
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK-----MD---P----QLEKETGAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d~~~-----~~---~----~~~~~~g~~~~~~l~e~l~~aDv   95 (223)
                      ++.|...+|.|.|.|.-|..+|+.+...|.   +++.+|+..     +.   .    ..++..   ...+|.|+++.+|+
T Consensus       184 gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~---~~~~L~eai~~adv  260 (764)
T PRK12861        184 GKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQET---DARTLAEVIGGADV  260 (764)
T ss_pred             CCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc---CCCCHHHHHhcCCE
Confidence            567899999999999999999999998898   699999543     10   1    122221   23589999999998


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEE
Q 027408           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM  174 (223)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~  174 (223)
                      ++=+ +    ..+++.++.++.|.+..+|.=.|....- ..+..++  ..|.-.. +.    .   ..+.| -+..|+++
T Consensus       261 liG~-S----~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~~--~~g~aiv-aT----G---rs~~p-nQ~NN~l~  324 (764)
T PRK12861        261 FLGL-S----AGGVLKAEMLKAMAARPLILALANPTPEIFPELAHA--TRDDVVI-AT----G---RSDYP-NQVNNVLC  324 (764)
T ss_pred             EEEc-C----CCCCCCHHHHHHhccCCEEEECCCCCccCCHHHHHh--cCCCEEE-Ee----C---CcCCC-Cccceeee
Confidence            7644 3    2578999999999999999988887742 2222222  3344221 21    1   11112 23568888


Q ss_pred             ccCCCCC-----cHHHHHHHHHHHHHHHHHHHcC
Q 027408          175 TPHVSGT-----TIDAQLRYAAGVKDMLDRYFKG  203 (223)
Q Consensus       175 tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~g  203 (223)
                      -|=++-.     ...-.+.|...+++.|.....-
T Consensus       325 FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~~  358 (764)
T PRK12861        325 FPYIFRGALDVGATTITREMEIAAVHAIAGLAEE  358 (764)
T ss_pred             cchhhHHHHHcCCccCCHHHHHHHHHHHHhhCCc
Confidence            8876532     2233445555566666665543

>PRK10083 putative oxidoreductase; Provisional

Probab=95.96  E-value=0.036  Score=48.05  Aligned_cols=92  Identities=23%  Similarity=0.292  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHcc-CCCe-EEEEcCCCCChhHHHhhCCeec-----CCHHhhcc----cCCEEEEcCCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKP-FNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP----KCDIVVVNTPL  102 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~-~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l~----~aDvVv~~~p~  102 (223)
                      -.|.+|.|.|.|.+|..+++.++. +|.+ |++.++++...+.+.++|+...     .++.+.+.    +.|+|+-++..
T Consensus       159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~  238 (339)
T PRK10083        159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACH  238 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCC
Confidence            358899999999999999999986 6986 7778876655556666665321     12333332    24577666542


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      . .    ...+.++.++++..+++++..
T Consensus       239 ~-~----~~~~~~~~l~~~G~~v~~g~~  261 (339)
T PRK10083        239 P-S----ILEEAVTLASPAARIVLMGFS  261 (339)
T ss_pred             H-H----HHHHHHHHhhcCCEEEEEccC
Confidence            1 1    125667788888888887643

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=95.95  E-value=0.031  Score=48.87  Aligned_cols=90  Identities=20%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-----CCH----Hhhc--ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~e~l--~~aDvVv~~~p~  102 (223)
                      .|++|.|.|.|.+|..+++.++..|.. |++.+++....+.++++|+..+     .++    .++.  ...|+++-++..
T Consensus       166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~  245 (351)
T cd08285         166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG  245 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence            589999999999999999999999995 8888876544555566665321     111    1222  247888776652


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      . .    .-.+.++.++++..+++++-
T Consensus       246 ~-~----~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         246 Q-D----TFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             H-H----HHHHHHHHhhcCCEEEEecc
Confidence            1 1    12566777888888877653

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=95.94  E-value=0.03  Score=49.17  Aligned_cols=93  Identities=18%  Similarity=0.155  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecCCHH----------hhcc-cCCEEEEcCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLD----------TMLP-KCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~----------e~l~-~aDvVv~~~p  101 (223)
                      =.|.+++|+|+|.+|-+..+.++..|. +|++.|.++.+.+.++++|...+-+..          ++-. .+|+.+-++-
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G  263 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVG  263 (366)
T ss_pred             CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccC
Confidence            369999999999999999999999998 599999998888899999875432222          2223 6889988876


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ..+     .-++.+....++...+-++-..
T Consensus       264 ~~~-----~~~~al~~~~~~G~~v~iGv~~  288 (366)
T COG1062         264 NVE-----VMRQALEATHRGGTSVIIGVAG  288 (366)
T ss_pred             CHH-----HHHHHHHHHhcCCeEEEEecCC
Confidence            332     2256666666666555555444

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=95.94  E-value=0.038  Score=47.79  Aligned_cols=91  Identities=24%  Similarity=0.302  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhhCCeec------CCHH----hhcccCCEEEEcCCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE------EDLD----TMLPKCDIVVVNTPL  102 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~----e~l~~aDvVv~~~p~  102 (223)
                      -.|.+|.|.|.|.+|..+++.++. +|.+|++.++++...+.++++|+..+      .+..    +.....|+++++.. 
T Consensus       161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~-  239 (338)
T PRK09422        161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAV-  239 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCC-
Confidence            357899999999999999999997 59999999887655566666665221      1111    12234575555543 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ...    ...+.++.++++..++.++.
T Consensus       240 ~~~----~~~~~~~~l~~~G~~v~~g~  262 (338)
T PRK09422        240 AKA----AFNQAVDAVRAGGRVVAVGL  262 (338)
T ss_pred             CHH----HHHHHHHhccCCCEEEEEee
Confidence            121    22566777888888887753

>PRK08324 short chain dehydrogenase; Validated

Probab=95.93  E-value=0.022  Score=54.81  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=34.5

Q ss_pred             cCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ..+.|+++.|.| .|.||+.+|+.|...|.+|++.+++.
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~  456 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDE  456 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            457899999999 59999999999999999999999875

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.92  E-value=0.027  Score=53.84  Aligned_cols=69  Identities=16%  Similarity=0.181  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhhCCeec--------C
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E   84 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~   84 (223)
                      ..|++|+|||.|..|...|..|+..|++|++|++....                     .+.....|+...        .
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            46999999999999999999999999999999976521                     122334454321        2


Q ss_pred             CHHhhcccCCEEEEcCCC
Q 027408           85 DLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        85 ~l~e~l~~aDvVv~~~p~  102 (223)
                      +++++....|.|++++-.
T Consensus       388 ~~~~l~~~~DaV~latGa  405 (639)
T PRK12809        388 TFSDLTSEYDAVFIGVGT  405 (639)
T ss_pred             CHHHHHhcCCEEEEeCCC
Confidence            455666789999998764

>PRK15076 alpha-galactosidase; Provisional

Probab=95.91  E-value=0.0088  Score=54.54  Aligned_cols=114  Identities=14%  Similarity=0.127  Sum_probs=67.6

Q ss_pred             CEEEEEcccHHHHHHHH--HH---ccC-CCeEEEEcCCCCChhHH--------HhhC----CeecCCHHhhcccCCEEEE
Q 027408           37 KTVGTVGCGRIGKLLLQ--RL---KPF-NCNLLYHDRVKMDPQLE--------KETG----AKFEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~--~l---~~~-G~~V~~~d~~~~~~~~~--------~~~g----~~~~~~l~e~l~~aDvVv~   98 (223)
                      ++|+|||.|.+|...+-  .+   ..+ +.+|..+|+++...+..        ...+    +...+++.+.+++||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            58999999999955543  22   233 56899999875333211        1112    2335677899999999999


Q ss_pred             cCCCC--h--------------------hhh-------hc----ccH---HHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q 027408           99 NTPLT--E--------------------KTR-------GM----FDK---DRIAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (223)
Q Consensus        99 ~~p~~--~--------------------~t~-------~~----i~~---~~~~~mk~ga~ivn~srg~~vd~~al~~~L  142 (223)
                      +.-..  +                    +|.       .+    +-.   +.++...|++.+||.+..--+-..++. .+
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~  160 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY  160 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence            87542  1                    110       00    011   223334589999999987645455554 22


Q ss_pred             HhCCccEEE
Q 027408          143 SSGHIAGYS  151 (223)
Q Consensus       143 ~~g~i~~a~  151 (223)
                      ...++.|.+
T Consensus       161 ~~~rviG~c  169 (431)
T PRK15076        161 PGIKTVGLC  169 (431)
T ss_pred             CCCCEEEEC
Confidence            344555544

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=95.89  E-value=0.11  Score=47.59  Aligned_cols=65  Identities=18%  Similarity=0.159  Sum_probs=44.5

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccC-------CC--eEEEEcCCCCChhH-H----Hhh-----CCeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPF-------NC--NLLYHDRVKMDPQL-E----KET-----GAKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~-------G~--~V~~~d~~~~~~~~-~----~~~-----g~~~~~~l~e~l~~aDvV   96 (223)
                      .+|+|||. |.+|..+|..+...       +.  +++.+|++....+- +    ...     .+....+..+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            47999999 99999999988655       44  68889987633221 1    100     122123445778899999


Q ss_pred             EEcCC
Q 027408           97 VVNTP  101 (223)
Q Consensus        97 v~~~p  101 (223)
                      +++..
T Consensus       181 VitAG  185 (444)
T PLN00112        181 LLIGA  185 (444)
T ss_pred             EECCC
Confidence            99864

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=95.89  E-value=0.038  Score=47.46  Aligned_cols=89  Identities=15%  Similarity=0.083  Sum_probs=58.8

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHH----hhc-----ccCCEEEEcCCCCh
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD----TML-----PKCDIVVVNTPLTE  104 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~----e~l-----~~aDvVv~~~p~~~  104 (223)
                      .|.+|.|+|. |.+|..+++.++..|.+|++.+++....+..+++|+..+.+.+    +.+     ...|+|+-++..  
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~--  223 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGG--  223 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcH--
Confidence            3679999998 9999999999999999999888776555555556652211111    111     236777665541  


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        .  ...+.++.++++..+|.++.
T Consensus       224 --~--~~~~~~~~l~~~G~~i~~g~  244 (326)
T cd08289         224 --K--TLAYLLSTLQYGGSVAVSGL  244 (326)
T ss_pred             --H--HHHHHHHHhhcCCEEEEEee
Confidence              1  12456777777777777753

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=95.89  E-value=0.035  Score=48.15  Aligned_cols=93  Identities=16%  Similarity=0.163  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec----CCH----Hhhc--ccCCEEEEcCCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL----DTML--PKCDIVVVNTPL  102 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~~l----~e~l--~~aDvVv~~~p~  102 (223)
                      ..|.+|.|.|.|.+|..+++.++..|+ +|++.+..........++|+..+    .+.    .++.  ...|+++-+...
T Consensus       166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~  245 (344)
T cd08284         166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGG  245 (344)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            368999999999999999999999997 78888665433444455663211    111    1223  247888877652


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      .     ......+..++++..+|.++...
T Consensus       246 ~-----~~~~~~~~~l~~~g~~v~~g~~~  269 (344)
T cd08284         246 A-----AALDLAFDLVRPGGVISSVGVHT  269 (344)
T ss_pred             H-----HHHHHHHHhcccCCEEEEECcCC
Confidence            1     12356678888888888887544

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=95.88  E-value=0.12  Score=44.98  Aligned_cols=67  Identities=15%  Similarity=0.196  Sum_probs=49.2

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-Chh--------HHHhhCCe--ecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ--------LEKETGAK--FEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~--------~~~~~g~~--~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|+||+++|- -++.++++..+..+|++|.+..|... ..+        .++..|..  ..+++ +.++++|+|..-.
T Consensus       144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~  222 (302)
T PRK14805        144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT  222 (302)
T ss_pred             CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence            589999999996 57789999999999999999998642 211        12233543  34565 5689999998744

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=95.87  E-value=0.024  Score=49.48  Aligned_cols=94  Identities=29%  Similarity=0.318  Sum_probs=58.0

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCCCChh----HHHh-h--CCeec---CCHHhhcccCCEEEEcCCC-
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ----LEKE-T--GAKFE---EDLDTMLPKCDIVVVNTPL-  102 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~----~~~~-~--g~~~~---~~l~e~l~~aDvVv~~~p~-  102 (223)
                      +||+|||. |.+|..+|..+...+.  ++..+|.+ ....    +... .  .+...   +++.+.+++||+|+++.-. 
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~   79 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP   79 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence            48999999 9999999999987664  79999986 3221    1111 0  11211   2235778999999998643 


Q ss_pred             -Ch-hhhh-cc--c----H---HHHhcCCCCcEEEEcCCCC
Q 027408          103 -TE-KTRG-MF--D----K---DRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       103 -~~-~t~~-~i--~----~---~~~~~mk~ga~ivn~srg~  131 (223)
                       .| +++. ++  |    +   +.+....|.+++++++..-
T Consensus        80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv  120 (310)
T cd01337          80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV  120 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence             12 1111 11  1    1   1223335789999997653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.85  E-value=0.017  Score=54.21  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      -.|++|.|.|. |.||+.+++.|...|++|.+++|+.
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~  114 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA  114 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            36899999996 9999999999999999999999875

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.84  E-value=0.019  Score=49.62  Aligned_cols=97  Identities=23%  Similarity=0.266  Sum_probs=69.3

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee--------------c----------CCHH
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--------------E----------EDLD   87 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--------------~----------~~l~   87 (223)
                      -.....++.++|+|-+|-..+-.....|+-|..+|-.+...+..+..|.++              .          .-+.
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a  239 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA  239 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence            356788899999999999999998999999999986542222222222111              0          1133


Q ss_pred             hhcccCCEEEEc--CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           88 TMLPKCDIVVVN--TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        88 e~l~~aDvVv~~--~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +.+++.|+||.+  .|..|. ..++.++....||||.+|||.+.
T Consensus       240 ~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlAa  282 (356)
T COG3288         240 EQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLAA  282 (356)
T ss_pred             HHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEehh
Confidence            556789999875  354443 45788999999999999999864

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.82  E-value=0.08  Score=47.82  Aligned_cols=104  Identities=15%  Similarity=0.177  Sum_probs=63.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc--ccCCEEEEcC--C-CChhhh---h
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNT--P-LTEKTR---G  108 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l--~~aDvVv~~~--p-~~~~t~---~  108 (223)
                      ++|.|+|+|..|.++|+.|+ .|.+|.++|..+.... .++.|+... . ++.+  .++|+|+..-  | .+|...   .
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~   76 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN   76 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence            46899999999999999999 9999999996532221 223466543 2 2233  4689887652  2 223221   1


Q ss_pred             cccH-HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          109 MFDK-DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       109 ~i~~-~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ++.+ +.+..+.+..+-|--+.|+.-...-+...|+.
T Consensus        77 i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~  113 (401)
T PRK03815         77 LISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED  113 (401)
T ss_pred             HhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            2222 22222222345566667887777777777775

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.81  E-value=0.021  Score=54.15  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=32.6

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV   68 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~   68 (223)
                      ..|.+.+|.|+|+|.+|..+|+.|.+.|.. ++++|..
T Consensus       334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            468899999999999999999999999984 7777753

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.79  E-value=0.025  Score=50.95  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=56.6

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------hHH----HhhC----Cee-
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------QLE----KETG----AKF-   82 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~~~----~~~g----~~~-   82 (223)
                      ..|..++|.|||+|.+|..+|+.|...|. ++.++|......                   +.+    .+.+    +.. 
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~  117 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH  117 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence            46899999999999999999999998887 588888642100                   000    0111    111 


Q ss_pred             ---c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhc
Q 027408           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK  117 (223)
Q Consensus        83 ---~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~  117 (223)
                         .  .+..++++++|+|+.|+ .+..++..+++...+.
T Consensus       118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~  156 (392)
T PRK07878        118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLA  156 (392)
T ss_pred             eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHc
Confidence               1  23456788899887765 4567777777665554

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=95.78  E-value=0.034  Score=48.83  Aligned_cols=65  Identities=22%  Similarity=0.204  Sum_probs=44.4

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCCCC---hhHHHhh---------CCeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKET---------GAKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~---~~~~~~~---------g~~~~~~l~e~l~~aDvV   96 (223)
                      .||+|||. |.+|..+|..+...|.       ++..+|.....   ...+.++         +.....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            37999998 9999999999876664       79999985411   1111111         111223556788999999


Q ss_pred             EEcCC
Q 027408           97 VVNTP  101 (223)
Q Consensus        97 v~~~p  101 (223)
                      +++.-
T Consensus        84 VitAG   88 (323)
T TIGR01759        84 LLVGA   88 (323)
T ss_pred             EEeCC
Confidence            99864

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.77  E-value=0.052  Score=49.96  Aligned_cols=71  Identities=23%  Similarity=0.292  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhhCCeec--------C
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E   84 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~   84 (223)
                      -.+++|.|||.|.+|...|..|+..|++|+++++.+..                     .+..++.|+...        .
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  218 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI  218 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence            37899999999999999999999999999999875421                     123445565421        1


Q ss_pred             CHHhhcccCCEEEEcCCCCh
Q 027408           85 DLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        85 ~l~e~l~~aDvVv~~~p~~~  104 (223)
                      .++++....|.|++++...+
T Consensus       219 ~~~~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       219 SLDDLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             CHHHHHhcCCEEEEEeCCCC
Confidence            34555567999999886543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.76  E-value=0.082  Score=50.72  Aligned_cols=70  Identities=20%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhhCCeec--------C
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E   84 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~   84 (223)
                      -.+++|+|||.|..|...|..|+..|++|+++++....                     .+.....|+...        .
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv  270 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI  270 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence            36899999999999999999999999999999976421                     112233454321        1


Q ss_pred             CHHhhcccCCEEEEcCCCC
Q 027408           85 DLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        85 ~l~e~l~~aDvVv~~~p~~  103 (223)
                      +++++..+.|.|++++-..
T Consensus       271 ~~~~~~~~~DaVilAtGa~  289 (652)
T PRK12814        271 TLEELQKEFDAVLLAVGAQ  289 (652)
T ss_pred             CHHHHHhhcCEEEEEcCCC
Confidence            3455555689999987643

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.76  E-value=0.0066  Score=45.24  Aligned_cols=81  Identities=21%  Similarity=0.234  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCH----Hhhcc--cCCEEEEcCCCChhhhhcccHHH
Q 027408           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~e~l~--~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      .||...++.++.+|.+|++.++++...+.++++|...+     .++    .++..  ..|+|+.|++. +    -.....
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-~----~~~~~~   75 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-G----DTLQEA   75 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-H----HHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc-H----HHHHHH
Confidence            37888899999999999999998766777888875421     112    23343  48999999872 2    233678


Q ss_pred             HhcCCCCcEEEEcCCCC
Q 027408          115 IAKMKKGVLIVNNARGA  131 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~  131 (223)
                      ++.++++..++.++-..
T Consensus        76 ~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   76 IKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHEEEEEEEEEESSTS
T ss_pred             HHHhccCCEEEEEEccC
Confidence            88899999999887543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.76  E-value=0.047  Score=54.72  Aligned_cols=71  Identities=24%  Similarity=0.303  Sum_probs=55.0

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh---------------------hHHHhhCCee--------c
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP---------------------QLEKETGAKF--------E   83 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~---------------------~~~~~~g~~~--------~   83 (223)
                      .-.|++|+|||-|..|-+.|..|...|+.|.+|.|+.+.-                     ++....|+.+        .
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence            4589999999999999999999999999999999875311                     1112234432        2


Q ss_pred             CCHHhhcccCCEEEEcCCCC
Q 027408           84 EDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        84 ~~l~e~l~~aDvVv~~~p~~  103 (223)
                      .+++++.++-|.|++++-.|
T Consensus      1862 vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             ccHHHHhhccCeEEEEeCCC
Confidence            48899999999999987543

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=95.76  E-value=0.026  Score=49.59  Aligned_cols=64  Identities=16%  Similarity=0.076  Sum_probs=43.6

Q ss_pred             EEEEEcc-cHHHHHHHHHHccCC-------CeEEEEcCCCCCh-hHHHhh-----------CCeecCCHHhhcccCCEEE
Q 027408           38 TVGTVGC-GRIGKLLLQRLKPFN-------CNLLYHDRVKMDP-QLEKET-----------GAKFEEDLDTMLPKCDIVV   97 (223)
Q Consensus        38 ~igIiG~-G~iG~~iA~~l~~~G-------~~V~~~d~~~~~~-~~~~~~-----------g~~~~~~l~e~l~~aDvVv   97 (223)
                      +|+|+|. |.+|+.++..|...+       .+|..+|+.+... ......           .+....++.+.+++||+|+
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI   83 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI   83 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence            6999999 999999999987644       4799999854211 000000           1112346668889999998


Q ss_pred             EcCC
Q 027408           98 VNTP  101 (223)
Q Consensus        98 ~~~p  101 (223)
                      .+.-
T Consensus        84 ~tAG   87 (325)
T cd01336          84 LVGA   87 (325)
T ss_pred             EeCC
Confidence            8754

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.062  Score=44.31  Aligned_cols=37  Identities=30%  Similarity=0.297  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+.++++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999996 9999999999999999999888754

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.74  E-value=0.097  Score=47.66  Aligned_cols=110  Identities=20%  Similarity=0.247  Sum_probs=65.7

Q ss_pred             CCC-CEEEEEcccHHHHHHHHHHccC--CCeEEEEcCCCCCh--hHHHhhCCeec-C-CHHhhcccCCEEEEcC--C-CC
Q 027408           34 LEG-KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDP--QLEKETGAKFE-E-DLDTMLPKCDIVVVNT--P-LT  103 (223)
Q Consensus        34 l~g-~~igIiG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~--~~~~~~g~~~~-~-~l~e~l~~aDvVv~~~--p-~~  103 (223)
                      +.+ ++|.|+|+|..|.+.++.+...  |++|.++|......  +..+. |+... . ...+.+.++|+||...  | .+
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~   82 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALAT   82 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCC
Confidence            556 7899999999999999999876  58899999754222  11222 55432 1 1234457899887754  2 23


Q ss_pred             hhhhh-------cccH-HHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          104 EKTRG-------MFDK-DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       104 ~~t~~-------~i~~-~~~~-~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      |....       ++.+ +.+. .++...+-|--+.|+.-...-+...|+.
T Consensus        83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  132 (438)
T PRK04663         83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA  132 (438)
T ss_pred             HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            32211       2222 2322 2333344455566777766667777765

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.72  E-value=0.024  Score=38.85  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=30.4

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      +|.|||.|.+|-.+|..++.+|.+|.++.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            589999999999999999999999999998763

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.71  E-value=0.021  Score=50.40  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             EEEEEc-ccHHHHHHHHHHccCCCe---EEEEcCCCCChhHHHhhCCe-ecC--CHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           38 TVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETGAK-FEE--DLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        38 ~igIiG-~G~iG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~g~~-~~~--~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      +|+|+| .|.+|+.+++.|...++.   +.++.+.....+.....+.. .+.  +. +.+.++|+|++|+|....     
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g~~~s-----   74 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAGGSVS-----   74 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCCHHHH-----
Confidence            589999 699999999999886654   33443332111111111211 111  22 334789999999993322     


Q ss_pred             cHHHHh-cCCCCcEEEEcC
Q 027408          111 DKDRIA-KMKKGVLIVNNA  128 (223)
Q Consensus       111 ~~~~~~-~mk~ga~ivn~s  128 (223)
                       .+... .++.|+.+||.+
T Consensus        75 -~~~a~~~~~~G~~VID~s   92 (339)
T TIGR01296        75 -KEFAPKAAKCGAIVIDNT   92 (339)
T ss_pred             -HHHHHHHHHCCCEEEECC
Confidence             22222 235678888877

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=95.71  E-value=0.018  Score=50.51  Aligned_cols=64  Identities=19%  Similarity=0.122  Sum_probs=42.4

Q ss_pred             EEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCCCCh-hHHHhh-----------CCeecCCHHhhcccCCEEE
Q 027408           38 TVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDP-QLEKET-----------GAKFEEDLDTMLPKCDIVV   97 (223)
Q Consensus        38 ~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~~-~~~~~~-----------g~~~~~~l~e~l~~aDvVv   97 (223)
                      +|+|||. |.+|..+|..+...+.       ++..+|+.+... ......           .+....+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999876443       589999854221 101000           1111124467889999999


Q ss_pred             EcCC
Q 027408           98 VNTP  101 (223)
Q Consensus        98 ~~~p  101 (223)
                      ++.-
T Consensus        81 itAG   84 (324)
T TIGR01758        81 LVGA   84 (324)
T ss_pred             EcCC
Confidence            8764

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK13529 malate dehydrogenase; Provisional

Probab=95.70  E-value=0.29  Score=45.89  Aligned_cols=166  Identities=12%  Similarity=0.119  Sum_probs=101.8

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHcc----CCC-------eEEEEcCCCC---C-hh-------HHHhhC-C------e
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKP----FNC-------NLLYHDRVKM---D-PQ-------LEKETG-A------K   81 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~----~G~-------~V~~~d~~~~---~-~~-------~~~~~g-~------~   81 (223)
                      +..|...+|.|+|.|..|..+|+.+..    .|.       +++.+|+...   . .+       .++... .      .
T Consensus       290 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~  369 (563)
T PRK13529        290 GEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEG  369 (563)
T ss_pred             CCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccccccc
Confidence            467899999999999999999998875    577       6889987631   1 11       111110 0      0


Q ss_pred             ecCCHHhhcccC--CEEEEcCCCChhhhhcccHHHHhcCCC---CcEEEEcCCCCccCHHHHHHHHH--hCCccEE-Eee
Q 027408           82 FEEDLDTMLPKC--DIVVVNTPLTEKTRGMFDKDRIAKMKK---GVLIVNNARGAIMDTQAVVDACS--SGHIAGY-SGD  153 (223)
Q Consensus        82 ~~~~l~e~l~~a--DvVv~~~p~~~~t~~~i~~~~~~~mk~---ga~ivn~srg~~vd~~al~~~L~--~g~i~~a-~lD  153 (223)
                      ...+|.|+++.+  |+++=+..    ..++++++.++.|.+   ..+|.=.|.....-|..-.++.+  +|+...| +..
T Consensus       370 ~~~~L~e~v~~~kPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGsp  445 (563)
T PRK13529        370 DVISLLEVVRNVKPTVLIGVSG----QPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSP  445 (563)
T ss_pred             CCCCHHHHHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCC
Confidence            114789999887  98865432    246899999999987   88999999887755544444444  4543322 221


Q ss_pred             CCCCCCCCCC---CCccCCCCeEEccCCCCC-----cHHHHHHHHHHHHHHHHHHHcC
Q 027408          154 VWNPQPAPKD---HPWRYMPNQAMTPHVSGT-----TIDAQLRYAAGVKDMLDRYFKG  203 (223)
Q Consensus       154 v~~~ep~~~~---~~l~~~~nv~~tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~g  203 (223)
                       |  .|..-+   ...-+..|+++-|=++-.     .....+.|...+++.|.+...-
T Consensus       446 -f--~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~  500 (563)
T PRK13529        446 -F--APVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPL  500 (563)
T ss_pred             -C--CCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCcc
Confidence             1  111111   111245688888876532     2223345555666666665543

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=95.67  E-value=0.052  Score=47.08  Aligned_cols=61  Identities=16%  Similarity=0.151  Sum_probs=41.2

Q ss_pred             EEcccHHHHHHHHHHccCCC--eEEEEcCCCCCh-hHHHhh---------CCeecCCHHhhcccCCEEEEcCC
Q 027408           41 TVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDP-QLEKET---------GAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        41 IiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~-~~~~~~---------g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      |||.|.+|..+|..+...+.  ++..+|++.... ..+.++         .+....+..+.+++||+|+++.-
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag   73 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG   73 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence            69999999999999876665  699999865322 111111         12222233467889999999765

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.67  E-value=0.1  Score=45.83  Aligned_cols=69  Identities=20%  Similarity=0.349  Sum_probs=51.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccC---CCeEE-EEcCCC-CChhHHHhhCC---eecCCHHhhccc--CCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF---NCNLL-YHDRVK-MDPQLEKETGA---KFEEDLDTMLPK--CDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~---G~~V~-~~d~~~-~~~~~~~~~g~---~~~~~l~e~l~~--aDvVv~~~p~~~~  105 (223)
                      -++||+|+|.|++-.++.+...   ++.|. +++|+. ...+.++..++   +.+.+.+|++++  +|+|++..|....
T Consensus         7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH   85 (351)
T KOG2741|consen    7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH   85 (351)
T ss_pred             eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence            4799999999999999999654   56655 667754 34456666676   457899999976  5999999985443

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=95.67  E-value=0.068  Score=47.21  Aligned_cols=91  Identities=20%  Similarity=0.256  Sum_probs=62.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-----CCHHhhc-----ccCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l-----~~aDvVv~~~p~~  103 (223)
                      .|++|.|.|.|.+|..+++.++..|.+ |++.+++....+..+++++..+     .++.+.+     ...|+|+-++...
T Consensus       186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~  265 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVP  265 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCc
Confidence            589999999999999999999999994 8888876644555555554221     1222211     3478888877521


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      +     .....++.++++..++.++..
T Consensus       266 ~-----~~~~~~~~l~~~G~~v~~g~~  287 (365)
T cd08278         266 A-----VIEQAVDALAPRGTLALVGAP  287 (365)
T ss_pred             H-----HHHHHHHHhccCCEEEEeCcC
Confidence            1     125667778888888887654

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=95.66  E-value=0.049  Score=45.38  Aligned_cols=141  Identities=13%  Similarity=0.134  Sum_probs=80.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhhC--------------CeecCCHHhhcc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG--------------AKFEEDLDTMLP   91 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g--------------~~~~~~l~e~l~   91 (223)
                      .+|+|+|-|.+|+++|-.++..|++|..||..+.....           .++.|              +....+++|+.+
T Consensus         4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk   83 (313)
T KOG2305|consen    4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK   83 (313)
T ss_pred             cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence            47999999999999999999999999999986531110           01111              233578899999


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCC
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  171 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~n  171 (223)
                      .+=.|--|+|..=..+.-+-+ .+..+-....|+..| -+.+-..-+.+.|.+..-   .|=++   |..  .|++ .|=
T Consensus        84 ~Ai~iQEcvpE~L~lkk~ly~-qlD~i~d~~tIlaSS-TSt~mpS~~s~gL~~k~q---~lvaH---PvN--PPyf-iPL  152 (313)
T KOG2305|consen   84 GAIHIQECVPEDLNLKKQLYK-QLDEIADPTTILASS-TSTFMPSKFSAGLINKEQ---CLVAH---PVN--PPYF-IPL  152 (313)
T ss_pred             hhhhHHhhchHhhHHHHHHHH-HHHHhcCCceEEecc-ccccChHHHhhhhhhhhh---eeEec---CCC--CCcc-cch
Confidence            988888899833222222212 222233334444443 344444445555544321   11111   221  1322 355


Q ss_pred             eEEccCCCCCcHHHHHHH
Q 027408          172 QAMTPHVSGTTIDAQLRY  189 (223)
Q Consensus       172 v~~tPH~a~~t~~~~~~~  189 (223)
                      |-+-|| -+.+.++.+|.
T Consensus       153 vElVPa-PwTsp~tVdrt  169 (313)
T KOG2305|consen  153 VELVPA-PWTSPDTVDRT  169 (313)
T ss_pred             heeccC-CCCChhHHHHH
Confidence            666675 45666666654

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.64  E-value=0.056  Score=46.93  Aligned_cols=87  Identities=21%  Similarity=0.172  Sum_probs=57.9

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecC-----CHHh--hc--ccCCEEEEcCCCCh
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT--ML--PKCDIVVVNTPLTE  104 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~-----~l~e--~l--~~aDvVv~~~p~~~  104 (223)
                      .|.+|.|.|. |.+|..+++.++..|.+|++.+.+. ..+.++++|+..+.     ...+  ..  +..|+++-+...  
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~--  253 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG--  253 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH--
Confidence            5899999998 9999999999999999988777544 34444555542211     1111  11  247888776651  


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                        .  .....++.++++..+++++
T Consensus       254 --~--~~~~~~~~l~~~G~~v~~g  273 (350)
T cd08274         254 --P--LFPDLLRLLRPGGRYVTAG  273 (350)
T ss_pred             --H--HHHHHHHHhccCCEEEEec
Confidence              1  1255677788887777764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=95.63  E-value=0.039  Score=48.73  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=48.4

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCC-CeEEEE-cCCCCC-hhHHHhhC----------Ce--ecCC-HHhhcccCCEEEEc
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFN-CNLLYH-DRVKMD-PQLEKETG----------AK--FEED-LDTMLPKCDIVVVN   99 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G-~~V~~~-d~~~~~-~~~~~~~g----------~~--~~~~-l~e~l~~aDvVv~~   99 (223)
                      .+|+|+|. |.+|+.+++.+.... +++... +..... ........          ..  .+.+ .++.+.++|+|+++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            47999995 999999999997755 676655 433211 11111010          01  1111 12345789999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      +|...... +. .   .....|..+|+.|
T Consensus        81 ~p~~~s~~-~~-~---~~~~~G~~VIDls  104 (341)
T TIGR00978        81 LPSEVAEE-VE-P---KLAEAGKPVFSNA  104 (341)
T ss_pred             CCHHHHHH-HH-H---HHHHCCCEEEECC
Confidence            99432211 11 1   2224577677665

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK06128 oxidoreductase; Provisional

Probab=95.63  E-value=0.048  Score=46.82  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      .+.||++.|.|. |.||+.+|+.|...|++|++..++
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            478999999996 999999999999999998876653

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.61  E-value=0.034  Score=48.81  Aligned_cols=71  Identities=20%  Similarity=0.177  Sum_probs=48.5

Q ss_pred             ccCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhh----CCee-------cCCHHhhcccCCEEE
Q 027408           31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKET----GAKF-------EEDLDTMLPKCDIVV   97 (223)
Q Consensus        31 ~~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~----g~~~-------~~~l~e~l~~aDvVv   97 (223)
                      +++-++++|.|.| .|.||+.+++.|...|.+|++.+++..... .....    ++..       ...+++++++.|+|+
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            5678999999999 599999999999999999998887542211 11110    1111       123456677789887


Q ss_pred             EcCC
Q 027408           98 VNTP  101 (223)
Q Consensus        98 ~~~p  101 (223)
                      -+..
T Consensus        85 h~A~   88 (353)
T PLN02896         85 HVAA   88 (353)
T ss_pred             ECCc
Confidence            6553

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=95.60  E-value=0.066  Score=48.11  Aligned_cols=96  Identities=16%  Similarity=0.141  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeE-EEEcCCCCChhHHHhhCCeecC-----CHHh----hc--ccCCEEEEcCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEE-----DLDT----ML--PKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~g~~~~~-----~l~e----~l--~~aDvVv~~~p  101 (223)
                      -.|.+|.|.|.|.+|..+++.++.+|.++ ++.+++....+.++++|+..+.     ++.+    +.  ...|+++-++.
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G  263 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVG  263 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence            35889999999999999999999999984 4556655455666777764221     2222    22  24798888776


Q ss_pred             CChhh---------hhcccHHHHhcCCCCcEEEEcCC
Q 027408          102 LTEKT---------RGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       102 ~~~~t---------~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ....-         ....-++.++.++++..++.++-
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       264 FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             CccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            32100         00112566788888888888765

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.60  E-value=0.039  Score=49.63  Aligned_cols=65  Identities=17%  Similarity=0.251  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCC
Q 027408           34 LEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ..|++|+|+|+          ..-+..+++.|...|.+|.+|||.-....   .+++...+++.+++++||+|++.+-
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  368 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRM  368 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCC
Confidence            47899999996          34577899999999999999999642222   4478888999999999999998875

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=95.60  E-value=0.036  Score=48.92  Aligned_cols=87  Identities=16%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHcc--CC-CeEEEEcCCCCChh-H-HHhhCCeecCCHHhh-cccCCEEEEcCCCChhhh
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKP--FN-CNLLYHDRVKMDPQ-L-EKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~--~G-~~V~~~d~~~~~~~-~-~~~~g~~~~~~l~e~-l~~aDvVv~~~p~~~~t~  107 (223)
                      .+.+|+|||. |.+|+.+.+.|..  +. .++..+.......+ . ....... +.++++. +.++|++++++|..    
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~-v~~~~~~~~~~~Dvvf~a~p~~----   77 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVT-VQDAAEFDWSQAQLAFFVAGRE----   77 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceE-EEeCchhhccCCCEEEECCCHH----
Confidence            5678999996 9999999999987  43 35554432211111 1 1111122 2244444 37899999999932    


Q ss_pred             hcccHHHHhcC-CCCcEEEEcC
Q 027408          108 GMFDKDRIAKM-KKGVLIVNNA  128 (223)
Q Consensus       108 ~~i~~~~~~~m-k~ga~ivn~s  128 (223)
                        +..+....+ +.|+.+||.|
T Consensus        78 --~s~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         78 --ASAAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             --HHHHHHHHHHHCCCEEEECC
Confidence              223333332 5688899988

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=95.59  E-value=0.049  Score=47.17  Aligned_cols=90  Identities=18%  Similarity=0.223  Sum_probs=59.9

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCee-cC----CHHhhc---ccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKF-EE----DLDTML---PKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~-~~----~l~e~l---~~aDvVv~~~p~~~~  105 (223)
                      .|.+|.|.|.|.+|+.+++.++.+|. +|++.+++....+..++++... +.    ++.++.   ...|+++-+..... 
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~-  243 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPA-  243 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHH-
Confidence            79999999999999999999999998 7888887654444445555421 11    122222   12688777664211 


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                          ...+.++.++++..+|+++.
T Consensus       244 ----~~~~~~~~L~~~G~~v~~g~  263 (339)
T cd08232         244 ----ALASALRVVRPGGTVVQVGM  263 (339)
T ss_pred             ----HHHHHHHHHhcCCEEEEEec
Confidence                12566777788888887753

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.59  E-value=0.062  Score=47.30  Aligned_cols=92  Identities=20%  Similarity=0.366  Sum_probs=55.3

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccC-CCeEEEEcCCC-CChhHHHhh-CCe------e-cCCHHhh-cccCCEEEEcCCCCh
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVK-MDPQLEKET-GAK------F-EEDLDTM-LPKCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~-G~~V~~~d~~~-~~~~~~~~~-g~~------~-~~~l~e~-l~~aDvVv~~~p~~~  104 (223)
                      .||+|+|. |-.|..+.+.|... ..++..+..+. ........+ +..      . ..+.+++ ..+||+|++|+|...
T Consensus         3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~   82 (349)
T COG0002           3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV   82 (349)
T ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchh
Confidence            58999995 99999999999876 45666655433 222222111 111      0 1123333 456999999999332


Q ss_pred             hhhhcccHHHHhc-CCCCcEEEEcCCCCccC
Q 027408          105 KTRGMFDKDRIAK-MKKGVLIVNNARGAIMD  134 (223)
Q Consensus       105 ~t~~~i~~~~~~~-mk~ga~ivn~srg~~vd  134 (223)
                      .      .+.... +.+|..|||.|----++
T Consensus        83 s------~~~v~~l~~~g~~VIDLSadfR~~  107 (349)
T COG0002          83 S------AELVPELLEAGCKVIDLSADFRLK  107 (349)
T ss_pred             H------HHHHHHHHhCCCeEEECCcccccC
Confidence            2      233332 33567799999766665

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.58  E-value=0.022  Score=48.87  Aligned_cols=65  Identities=14%  Similarity=0.108  Sum_probs=45.5

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-------ecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ++|.|.|. |.||+.+++.|...|.+|++++++..........++.       ..+++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            47899995 9999999999999999999999865322111111222       11345667788999887664

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=95.57  E-value=0.065  Score=45.84  Aligned_cols=87  Identities=14%  Similarity=0.122  Sum_probs=53.8

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHH-------hhc--ccCCEEEEcCCCChh
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD-------TML--PKCDIVVVNTPLTEK  105 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~-------e~l--~~aDvVv~~~p~~~~  105 (223)
                      +.+|.|.|. |.+|..+++.++..|.+|++.+++....+...++|.....+..       ...  ...|+|+-++..   
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~---  223 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGG---  223 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCch---
Confidence            568999998 9999999999999999999888876444444555542111111       111  135666544331   


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                       .  ...+.++.++++..+|.++
T Consensus       224 -~--~~~~~~~~l~~~g~~v~~g  243 (325)
T cd05280         224 -D--VLANLLKQTKYGGVVASCG  243 (325)
T ss_pred             -H--HHHHHHHhhcCCCEEEEEe
Confidence             1  1245566666666666654

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.57  E-value=0.053  Score=47.84  Aligned_cols=68  Identities=15%  Similarity=0.187  Sum_probs=50.3

Q ss_pred             CC-CCCEEEEEcc-------cHHHHHHHHHHccCCCeEEEEcC-CC--CChhH-------HHhhC--CeecCCHHhhccc
Q 027408           33 DL-EGKTVGTVGC-------GRIGKLLLQRLKPFNCNLLYHDR-VK--MDPQL-------EKETG--AKFEEDLDTMLPK   92 (223)
Q Consensus        33 ~l-~g~~igIiG~-------G~iG~~iA~~l~~~G~~V~~~d~-~~--~~~~~-------~~~~g--~~~~~~l~e~l~~   92 (223)
                      .+ .|+||+|++.       +++.++++..+..+|++|.+..| ..  ...+.       ++..|  +...+++++.+++
T Consensus       165 ~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~  244 (335)
T PRK04523        165 TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAG  244 (335)
T ss_pred             CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC
Confidence            37 7999987654       38999999999999999999998 43  12221       12334  4456899999999


Q ss_pred             CCEEEEcC
Q 027408           93 CDIVVVNT  100 (223)
Q Consensus        93 aDvVv~~~  100 (223)
                      +|+|..-.
T Consensus       245 aDvvy~~~  252 (335)
T PRK04523        245 ADVVYAKS  252 (335)
T ss_pred             CCEEEece
Confidence            99998754

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.56  E-value=0.058  Score=49.22  Aligned_cols=107  Identities=17%  Similarity=0.172  Sum_probs=64.7

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-----HHHhhCCeec--CCHH-----hhcccCCEEEEcCCCChh
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEKETGAKFE--EDLD-----TMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-----~~~~~g~~~~--~~l~-----e~l~~aDvVv~~~p~~~~  105 (223)
                      +|.|||.|..|.+.|+.|...|++|.++|+......     .....|+...  ...+     +.+.+.|+|+......+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence            689999999999999999999999999997653211     1233455432  1121     456789998874332221


Q ss_pred             hhh----------cccHH-H-HhcCCCC-cEEEEcCCCCccCHHHHHHHHHh
Q 027408          106 TRG----------MFDKD-R-IAKMKKG-VLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       106 t~~----------~i~~~-~-~~~mk~g-a~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ..-          ++.+- . ...+++. .+-|--+.|+.-...-|...|+.
T Consensus        82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~  133 (459)
T PRK02705         82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA  133 (459)
T ss_pred             CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            111          12222 2 2333333 34455667877666666667765

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=95.56  E-value=0.089  Score=45.40  Aligned_cols=110  Identities=11%  Similarity=0.057  Sum_probs=68.8

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeecCCHHhhccc--CCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~--aDvVv~~~p~~~~t~~~i  110 (223)
                      ...+|.|.|. |.+|+.+-+.+.+.|.+ |..+++..-..   .-.|+..+.+++|+-+.  .|+.++++|.. .+...+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~---~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l   80 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGT---TVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAI   80 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcc---eecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHH
Confidence            3567999995 99999999999988887 33455541122   23577778899998876  79999999922 222222


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEE
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a  150 (223)
                       ++..+.=-+.++++..+-++ -+++.|.+..++..++-.
T Consensus        81 -~e~~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~giril  118 (286)
T TIGR01019        81 -FEAIDAGIELIVCITEGIPV-HDMLKVKRYMEESGTRLI  118 (286)
T ss_pred             -HHHHHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEEE
Confidence             22222111233343333332 256788888888766643

ATP citrate lyases appear to form an outgroup.

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=95.55  E-value=0.29  Score=46.10  Aligned_cols=162  Identities=12%  Similarity=0.099  Sum_probs=100.0

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHcc-----CCC-------eEEEEcCCCC----Chh--------HHHhhCCeecCCH
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKP-----FNC-------NLLYHDRVKM----DPQ--------LEKETGAKFEEDL   86 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~-----~G~-------~V~~~d~~~~----~~~--------~~~~~g~~~~~~l   86 (223)
                      +..|...+|.|+|.|..|..+|+.+..     .|.       +++.+|+...    ..+        .++.  .....+|
T Consensus       316 g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~--~~~~~~L  393 (581)
T PLN03129        316 GGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD--HEPGASL  393 (581)
T ss_pred             CCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh--cccCCCH
Confidence            467899999999999999999998876     466       6888887631    101        1111  1234689


Q ss_pred             Hhhccc--CCEEEEcCCCChhhhhcccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH--hCCccEEEeeCCCCCC
Q 027408           87 DTMLPK--CDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGHIAGYSGDVWNPQP  159 (223)
Q Consensus        87 ~e~l~~--aDvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~ivn~srg~~vd~~al~~~L~--~g~i~~a~lDv~~~ep  159 (223)
                      .|+++.  .|+++=+..    ..+++.++.++.|.   +..+|.=.|...-.-|..-.++.+  +|+...|.     ..|
T Consensus       394 ~e~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~At-----GSP  464 (581)
T PLN03129        394 LEAVKAIKPTVLIGLSG----VGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFAS-----GSP  464 (581)
T ss_pred             HHHHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEe-----CCC
Confidence            999988  898876542    23689999999995   778888888776433333333333  35533221     112


Q ss_pred             CCC---C---CCccCCCCeEEccCCCCC-----cHHHHHHHHHHHHHHHHHHHcC
Q 027408          160 APK---D---HPWRYMPNQAMTPHVSGT-----TIDAQLRYAAGVKDMLDRYFKG  203 (223)
Q Consensus       160 ~~~---~---~~l~~~~nv~~tPH~a~~-----t~~~~~~~~~~~~~~i~~~~~g  203 (223)
                      .++   +   ...-+..|+++-|=++-.     .....+.|...+++.|.++..-
T Consensus       465 f~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~  519 (581)
T PLN03129        465 FDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTE  519 (581)
T ss_pred             CCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCc
Confidence            211   1   111245688888876632     2223455555666666666543

>PRK14851 hypothetical protein; Provisional

Probab=95.53  E-value=0.17  Score=48.74  Aligned_cols=37  Identities=19%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~   68 (223)
                      ..|.+++|+|+|+|.+|..+|..|...|. ++.++|..
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D   76 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD   76 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            46899999999999999999999998887 46677643

>PLN02214 cinnamoyl-CoA reductase

Probab=95.50  E-value=0.041  Score=48.32  Aligned_cols=69  Identities=25%  Similarity=0.231  Sum_probs=48.4

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChh--HHHhh-----CCe-------ecCCHHhhcccCCEEE
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKET-----GAK-------FEEDLDTMLPKCDIVV   97 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~--~~~~~-----g~~-------~~~~l~e~l~~aDvVv   97 (223)
                      .+.+++|.|.|. |.||+.+++.|...|++|.+..|+.....  .....     .+.       ...+++++++.+|+|+
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            467899999997 99999999999999999999988643211  00110     111       1234567778899887


Q ss_pred             EcCC
Q 027408           98 VNTP  101 (223)
Q Consensus        98 ~~~p  101 (223)
                      -+..
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            7764

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=95.50  E-value=0.063  Score=46.70  Aligned_cols=89  Identities=20%  Similarity=0.219  Sum_probs=59.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCeec-----CCH----Hhhc--ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~e~l--~~aDvVv~~~p~  102 (223)
                      .|.+|.|.|.|.+|..+++.++.+| .+|++++++.......+++|+..+     .++    .++.  ...|+|+-++..
T Consensus       166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~  245 (345)
T cd08286         166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGI  245 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCC
Confidence            5889999999999999999999999 688888775544444455554211     111    1222  247888877642


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                       +.    .....+..++++..+++.+
T Consensus       246 -~~----~~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         246 -PA----TFELCQELVAPGGHIANVG  266 (345)
T ss_pred             -HH----HHHHHHHhccCCcEEEEec
Confidence             11    1245557788888888775

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.49  E-value=0.068  Score=45.32  Aligned_cols=89  Identities=16%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-cCCHHhhc-ccCCEEEEcCCCChhhhhccc
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~e~l-~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .|.++.|.|. |.+|+.+++.++.+|.+|++.+++....+..+++|+.. ....+++. ...|+++-++..    ..  .
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~----~~--~  205 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGG----PQ--L  205 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCc----HH--H
Confidence            5899999999 99999999999999999998887654445555566421 11111222 247888766541    11  2


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q 027408          112 KDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~sr  129 (223)
                      ...++.|+++..+|+++.
T Consensus       206 ~~~~~~l~~~G~~v~~g~  223 (305)
T cd08270         206 ARALELLAPGGTVVSVGS  223 (305)
T ss_pred             HHHHHHhcCCCEEEEEec
Confidence            567788888888888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		1e-114
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		1e-113
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		1e-59
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		8e-59
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		6e-58
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		1e-57
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		1e-57
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		3e-55
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		3e-55
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		8e-26
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		9e-26
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		5e-25
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		6e-24
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		9e-24
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		6e-23
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		1e-22
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		2e-22
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		2e-21
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		3e-21
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		1e-20
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		5e-20
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		5e-19
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		6e-17
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		6e-17
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		9e-17
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		2e-16
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		3e-16
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		3e-16
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		3e-16
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		6e-16
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		1e-15
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		1e-15
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		2e-15
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		3e-15
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		3e-15
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		3e-15
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		6e-15
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		1e-14
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		1e-14
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		2e-14
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		5e-14
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		6e-14
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		8e-14
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-13
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		3e-13
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		3e-13
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		3e-13
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		1e-12
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		2e-12
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		5e-12
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		3e-11
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		3e-11
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		5e-11
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		8e-11
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		7e-10
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		2e-09
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-08
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		9e-07
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		3e-06

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score =  405 bits (1042), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 185/223 (82%), Positives = 206/223 (92%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 135 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 194
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 195 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 254
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 255 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 314
Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 315 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 357

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 185/223 (82%), Positives = 206/223 (92%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 188
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 248
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 249 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 308
Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 309 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 351

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score =  226 bits (575), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 153/224 (68%), Gaps = 7/224 (3%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 130 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 189
Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 190 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 249
Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 250 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 309
Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 217
           TPH SGTT+DAQ RYA G K++L+ +F G+ D+  Q+ I+  GE
Sbjct: 310 TPHYSGTTLDAQTRYAQGTKNILESFFTGKFDYRPQDIILLNGE 353

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score =  223 bits (567), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 152/224 (67%), Gaps = 7/224 (3%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 188
Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248
Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308
Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 217
           TPH SGTT+DAQ RYA G  ++L+ +F G+ D+  Q+ I+  GE
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGE 352

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score =  220 bits (560), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 137/219 (62%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336
Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 219
           TT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 337 TTLTAQARYAAGTREILEXFFEGRPIRDEYLIVQGGALA 375

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 137/219 (62%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336
Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 219
           TT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 337 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 137/219 (62%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 215
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 216 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 275
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335
Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 219
           TT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 336 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 374

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 139/219 (63%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L LVRN++P H    +G WN+A    R+YD+EG  VGTV  GRIG  +L+ L PF+ 
Sbjct: 157 MMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDM 216
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M   CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG + D  A+V A  SG +AGY+GDVW PQPAP DHPWR MP+  MTPH+SG
Sbjct: 277 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 336
Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 219
           T++ AQ RYAAG +++L+ YF+G     +  IV+ G LA
Sbjct: 337 TSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLA 375

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 139/219 (63%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L LVRN++P H    +G WN+A    R+YD+EG  VGTV  GRIG  +L+ L PF+ 
Sbjct: 156 MMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDM 215
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M   CD+V +N PL  +T  M + + +   K+
Sbjct: 216 HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKR 275
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG + D  A+V A  SG +AGY+GDVW PQPAP DHPWR MP+  MTPH+SG
Sbjct: 276 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 335
Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 219
           T++ AQ RYAAG +++L+ YF+G     +  IV+ G LA
Sbjct: 336 TSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLA 374

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 3/180 (1%)
Query: 28  AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
           ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD
Sbjct: 133 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 190
Query: 88  TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
            +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+
Sbjct: 191 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 250
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
                DV+  +P   D P   +    +TPH+  +T +AQ R    V + +     GE  P
Sbjct: 251 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 309

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 3/180 (1%)
Query: 28  AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
           ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD
Sbjct: 134 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 191
Query: 88  TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
            +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+
Sbjct: 192 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 251
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
                DV+  +P   D P   +    +TPH+  +T +AQ R    V + +     GE  P
Sbjct: 252 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 310

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 102/188 (54%), Gaps = 7/188 (3%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAY----RAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
           I+ L+R        +  GEW      +    R   L GK VG +G G IGK + +RL PF
Sbjct: 109 IINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPF 168
Query: 59  NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
              L Y  R +    +EKE  A++  D+D +L K DIV++  PLT  T  + +++R+ K+
Sbjct: 169 GVKLYYWSRHR-KVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKL 226
Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
           + G  +VN  RGA++D +AV +A   G + GY+ DV+  +P  +   ++Y     +TPH 
Sbjct: 227 E-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHY 285
Query: 179 SGTTIDAQ 186
           +G  ++AQ
Sbjct: 286 AGLALEAQ 293

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           +LEGKT+G +G GRIG  + +       N+L +D    + +  KE   KF  DL+T+L +
Sbjct: 139 ELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP-NEERAKEVNGKFV-DLETLLKE 196
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D+V ++ PL E T  + +++R+  MKK  +++N +RG ++DT A+V A   G IAG   
Sbjct: 197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGL 256
Query: 153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 203
           DV+  +P PKDHP     N  +TPH+  +T++AQ R    V + + +  KG
Sbjct: 257 DVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  106 bits (265), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 117/202 (57%), Gaps = 8/202 (3%)
Query: 8   RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K FN  +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRI 176
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           LY+ R + + ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+  MKK  
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTA 234
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++DT A+V A   G IAG   DV+  +P   +  ++ + N  +TPH+   +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 183 IDAQLRYAAGVKDMLDRYFKGE 204
             A+   A  V   L  + +GE
Sbjct: 294 FGAREGMAELVAKNLIAFKRGE 315

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 116/202 (57%), Gaps = 8/202 (3%)
Query: 8   RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K FN  +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRI 176
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           LY+ R + + ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+   KK  
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTA 234
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++DT A+V A   G IAG   DV+  +P   +  ++ + N  +TPH+   +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 183 IDAQLRYAAGVKDMLDRYFKGE 204
             A+   A  V   L  + +GE
Sbjct: 294 FGAREGXAELVAKNLIAFKRGE 315

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 42  VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 101
           VG GRIG+ + +R   F   ++YH R        K     F   L+ +L + D+V ++TP
Sbjct: 150 VGMGRIGQAVAKRALAFGMRVVYHARTP------KPLPYPFL-SLEELLKEADVVSLHTP 202
Query: 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 161
           LT +T  + +++R+  MK+G +++N ARGA++DT+A+V+A   GH+ G   DV +P+P P
Sbjct: 203 LTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLP 261
Query: 162 KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
             HP   +PN  +TPH+       + R A    + L    +G + P
Sbjct: 262 PGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPP 307

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    
Sbjct: 134 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKT 191
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV
Sbjct: 192 IGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGV 249
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T
Sbjct: 250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGAST 308
Query: 183 IDAQLRYAAGVKDMLDRYFKGEDF 206
            +AQ R    +        KG+  
Sbjct: 309 KEAQSRCGEEIAVQFVDMVKGKSL 332

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 4/167 (2%)
Query: 17  VISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75
           V SG W   G        L G+ +G  G GRIG+ +  R + F   + YH+R ++   LE
Sbjct: 153 VRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHALE 212
Query: 76  KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 135
           +  GA + + LD++L   DI ++  P   + +G  D DRIAK+ +G +++N +RG +++ 
Sbjct: 213 E--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLIND 270
Query: 136 QAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            A+++A  S H+     DV+  +PA  D  +R + N  +TPH+   T
Sbjct: 271 DALIEALRSKHLFAAGLDVFANEPA-IDPRYRSLDNIFLTPHIGSAT 316

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 10/202 (4%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L+R   P      +G W    +  R  ++ GKT+G VG G IG  +    +     +
Sbjct: 125 IIMLMRRIFPRSVSAHAGGWEKTAIGSR--EVRGKTLGIVGYGNIGSQVGNLAESLGMTV 182
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y+D      +L+     K    LD +L   D+V ++ P ++ T  +  + ++ KMKKG 
Sbjct: 183 RYYD---TSDKLQY-GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGA 238
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH----PWRYMPNQAMTPHV 178
            ++NNARG+ +D +A+      GH+AG + DV+  +PA        P + + N  +TPH+
Sbjct: 239 FLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHI 298
Query: 179 SGTTIDAQLRYAAGVKDMLDRY 200
            G+T +AQ R    V   L  Y
Sbjct: 299 GGSTEEAQERIGTEVTRKLVEY 320

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 1/172 (0%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+ KT+G  G G IG+ L +R + F+ ++ Y D  +     E    A F + LD++L   
Sbjct: 144 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVS 203
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
               +N P T +TR  F+K  I  + +G ++VN ARG ++D + VV A  +G +A    D
Sbjct: 204 QFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFD 263
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 205
           V+  +P   +  +  +PN  + PH+      A+   A    D++D  F G D
Sbjct: 264 VFAGEPNINEGYYD-LPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGAD 314

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 9/182 (4%)
Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT-- 88
           Y L   TVG +G GRIG+ + +RLKPF     LY  R     Q   E  A+F+ +  +  
Sbjct: 151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVSTP 205
Query: 89  -MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
            +  + D +VV   LT  T G+ +KD   KMK+  + +N +RG +++   +  A +SG I
Sbjct: 206 ELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKI 265
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
           A    DV +P+P P +HP   + N  + PH+   T   +   +    + L    +GE  P
Sbjct: 266 AAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMP 325
Query: 208 VQ 209
            +
Sbjct: 326 SE 327

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT-- 88
           Y L   TVG +G GRIG+ + +RLKPF     LY  R     Q   E  A+F+ +  +  
Sbjct: 149 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVSTP 203
Query: 89  -MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
            +  + D +VV   LT  T G+ +KD   K K+  + +N +RG +++   +  A +SG I
Sbjct: 204 ELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQALASGKI 263
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
           A    DV +P+P P +HP   + N  + PH+   T   +   +    + L    +GE  P
Sbjct: 264 AAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTXSLLAANNLLAGLRGEPXP 323
Query: 208 VQ 209
            +
Sbjct: 324 SE 325

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D     P L   T 
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 193
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            +   DL  M    D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ 
Sbjct: 194 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 250
Query: 140 DACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKD 195
           DA +S H+AG + DV+  +PA    P   P     N  +TPH+ G+T +AQ      V  
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAG 310
Query: 196 MLDRY 200
            L +Y
Sbjct: 311 KLIKY 315

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D     P L   T 
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 193
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            +   DL  M    D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ 
Sbjct: 194 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 250
Query: 140 DACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKD 195
           DA +S H+AG + DV+  +PA    P   P     N  +TPH+ G+T +AQ      V  
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAG 310
Query: 196 MLDRY 200
            L +Y
Sbjct: 311 KLIKY 315

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 16/166 (9%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           ++  + VG VG G IG++ +Q ++ F   ++ +D  + +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++ P       M + + IAKMK+ V+IVN +RG ++DT AV+    SG I GY+ 
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 153 DVWNPQPAPKDHPWR-------------YMPNQAMTPHVSGTTIDA 185
           DV+  +    +  W                PN  +TPH +  T  A
Sbjct: 260 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHA 305

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D     P L   T 
Sbjct: 136 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 192
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            +   DL  M    D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ 
Sbjct: 193 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALC 249
Query: 140 DACSSGHIAGYSGDVWNPQPAPKDHPWRY----MPNQAMTPHVSGTTIDAQLRYAAGVKD 195
           DA +S H+AG + DV+  +PA    P+        N  +TPH+ G+T +AQ      V  
Sbjct: 250 DALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAG 309
Query: 196 MLDRY 200
            L +Y
Sbjct: 310 KLIKY 314

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 162 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS 179
           I G + DV   +P +    P +  PN   TPH +
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 159 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTL 217
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 218 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 277
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS 179
           I G + DV   +P +    P +  PN   TPH +
Sbjct: 278 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 311

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 162 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS 179
           I G + DV   +P +    P +  PN   TPH +
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           ++  + VG VG G IG++ +Q ++ F   ++ +D  + +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++ P       M + + IAKMK+ V+IVN +RG ++DT AV+    SG I GY+ 
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 153 DVWNPQPAPKDHPWR 167
           DV+  +    +  W 
Sbjct: 260 DVYEGEVGIFNEDWE 274

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG  +  RL+ +   L YH R  +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 185
           V+  +       P   D      PN   TPH+ G+ + A
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG  +  RL+ +   L YH R  +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 185
           V+  +       P   D      PN   TPH+ G+ + A
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 2/178 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR G+ +  R K F  +++++D    D  +E+  G +    L
Sbjct: 143 VASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDG-IERSLGVQRVYTL 201
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L + D V ++  L E    + +   I +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 202 QDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGR 261
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 203
           I G + DV   +P +    P +  PN   TPH +  +  A L         + R   G
Sbjct: 262 IRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITG 319

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG  +  RL+ +   L YH+   +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 185
           V+  +       P   D      PN   TPH+ G+ + A
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG  +  RL+ +   L YH+   +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 185
           V+  +       P   D      PN   TPH+ G+ + A
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G  R+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 162 VASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS 179
           I G + DV   +P +    P +  PN   TPH +
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 16/166 (9%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           ++  + VG VG G IG++ ++ ++ F   ++ +D  K +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFK-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++ P       M +   IA+MK GV+IVN +RG ++DT AV+    SG I G+  
Sbjct: 200 ADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVM 259
Query: 153 D-------VWNPQPAPKDHPWRYM------PNQAMTPHVSGTTIDA 185
           D       V+N     K+ P + +      PN  +TPH +  T  A
Sbjct: 260 DTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHA 305

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D   ++ +L     
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD---IENKLPLGNA 191
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            + +  L  +L   D+V ++ P    T+       I+  K G L++N +RG ++D  A+ 
Sbjct: 192 TQVQH-LSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALC 250
Query: 140 DACSSGHIAGYSGDVWNPQPAPKDHPWRY----MPNQAMTPHVSGTTIDAQLRYAAGVKD 195
           DA +S H+AG + DV+  +PA    P+        N  +TPH+ G+T +AQ      V  
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAG 310
Query: 196 MLDRY 200
            L +Y
Sbjct: 311 KLIKY 315

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG     RL+ +   L YH    +D Q E+  G + +     +    
Sbjct: 144 LDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQRLGLR-QVACSELFASS 202
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 203 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 262
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 185
           V+  +       P   D      PN   TPH+ G+ + A
Sbjct: 263 VFEXEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 300

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 8/178 (4%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           +A  +++  GK +G +G G IG  L    +     + ++D   ++ +L      + +  L
Sbjct: 136 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD---IENKLPLGNATQVQH-L 191
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D+V ++ P    T+       I+  K G L++N +RG ++D  A+ DA +S H
Sbjct: 192 SDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKH 251
Query: 147 IAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 200
           +AG + DV+  +PA    P   P     N  +TPH+ G+T +AQ      V   L +Y
Sbjct: 252 LAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 309

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 38  TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 97
           TVG VG GRIG++  Q        ++  D  ++    +  T    +  LD +L K DI+ 
Sbjct: 148 TVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCT----QVSLDEVLEKSDIIT 203
Query: 98  VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157
           ++ P  ++   +  +D + KMK G ++VN ARG ++DT+AV++A  SG + GY  DV + 
Sbjct: 204 IHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDG 263
Query: 158 QPAP--KDHPWRYM------------PNQAMTPHVSGTTIDA 185
           + +   KD   + +            P   +TPH+   T +A
Sbjct: 264 EASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEA 305

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 22  WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK 81
           W    ++   Y+L   TVG +G G IG  + +        ++ +D V  +P+ E      
Sbjct: 137 WPSNLISNEIYNL---TVGLIGVGHIGSAVAEIFSAMGAKVIAYD-VAYNPEFEPFLTYT 192
Query: 82  FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 141
              D DT+L + DIV ++TPL   T  M  + ++ +MKK   ++N ARG ++DT A++ A
Sbjct: 193 ---DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKA 249
Query: 142 CSSGHIAGYSGDVWNPQPA------------PKDH-PWRYMPNQAMTPH 177
              G IAG   D    + +            P+D+     MPN  +TPH
Sbjct: 250 LQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 10/206 (4%)
Query: 4   LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
           L ++R    G   V  G W         +  +GK +G +G G+IG+ L  R + F  ++ 
Sbjct: 139 LAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVR 198
Query: 64  YHDRVKMD--PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           Y +R  +     +  ++      D        D++ V    +  T+ + D   +  +   
Sbjct: 199 YWNRSTLSGVDWIAHQSPVDLARD-------SDVLAVCVAASAATQNIVDASLLQALGPE 251
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            ++VN ARG ++D  A+++A  SG IAG   DV+  +PA +   +   PN  + PH    
Sbjct: 252 GIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSE-FHTTPNTVLXPHQGSA 310
Query: 182 TIDAQLRYAAGVKDMLDRYFKGEDFP 207
           T++ +      V   L  +F GE  P
Sbjct: 311 TVETRXAXGKLVLANLAAHFAGEKAP 336

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 9/203 (4%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL ++R        V  G W   G         GK VG +G GRIG  + +R + F+C +
Sbjct: 132 ILAVLRRICECDKYVRRGAWKF-GDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKG 121
            Y  R K     +  T   +   +  +    DI+VV  PLT +T  + +++ I  +  KG
Sbjct: 191 SYFSRSK-----KPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG 245
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
           VLI N  RG  +D   +V A   G + G   DV+  +P   +  +  + N  + PHV   
Sbjct: 246 VLI-NIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFG-LENVVLLPHVGSG 303
Query: 182 TIDAQLRYAAGVKDMLDRYFKGE 204
           T++ +   A  V   L+ +F G+
Sbjct: 304 TVETRKVMADLVVGNLEAHFSGK 326

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86  LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 201
            +     DV   +P         M +  +T H+ G  I+    +       +DR+ 
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86  LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 201
            +     DV   +P         M +  +T H+ G  I+    +       +DR+ 
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86  LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 201
            +     DV   +P         M +  +T H+ G  I+    +       +DR+ 
Sbjct: 274 KLLSAGLDVHEFEPNVSKELIE-MKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 23/217 (10%)
Query: 4   LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
           L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++  K F   ++
Sbjct: 114 LYLLRNMGKVQAQLQAGDYEKAGT-FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI 172
Query: 64  YHDRVKMDPQLEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            +D   M     K     F+   L+ +  + D++ ++ P  E+   + ++     MK G 
Sbjct: 173 AYDPYPM-----KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGA 227
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP----------APKDHPWRY---M 169
           +++N AR  ++DTQA++    SG +AG   D +  +           + KD  W     M
Sbjct: 228 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 287
Query: 170 PNQAMTPHVSGTTIDA--QLRYAAGVKDMLDRYFKGE 204
           PN  ++PH++  T  A   + Y + ++ ++D   KGE
Sbjct: 288 PNVVLSPHIAYYTETAVHNMVYFS-LQHLVDFLTKGE 323

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 31  AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 90
           A +L   T+G +G GRIG  +      F   +L +D VK +    KE G  +   LD +L
Sbjct: 136 ARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDL--KEKGCVYT-SLDELL 192
Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
            + D++ ++ P T++T    +++RI+  K GV ++N ARG ++DT A+  A   G  +G 
Sbjct: 193 KESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGL 252
Query: 151 SGDVWNPQ 158
             DV+  +
Sbjct: 253 GLDVFEDE 260

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 2/166 (1%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+G+T+G  G G+IG+L+    + F  N+L   R +   +  +  G    E  D +  + 
Sbjct: 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQS 216
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D++ V+  L ++TR +     + +MK   L VN +R  +++   +V A + G     + D
Sbjct: 217 DVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAID 276
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDA-QLRYAAGVKDMLD 198
           V+  +P  + H    M N   TPH+     ++ ++ +    +++LD
Sbjct: 277 VFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILD 322

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 6/157 (3%)
Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTML 90
           Y  E  +VG  G G +G  + + L+ +   L    R +   P +E   G    E+L   L
Sbjct: 135 YTREEFSVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG---REELRAFL 191
Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
            +  +++   P T +T G+ + + + ++  G  ++N ARG  +    ++ A  SG + G 
Sbjct: 192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGA 251
Query: 151 SGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDAQ 186
             DV++ +P P++ P WR+ P  A TPH++  T  A+
Sbjct: 252 XLDVFSQEPLPQESPLWRH-PRVAXTPHIAAVTRPAE 287

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           +L GKT+G VG GRIG  +          +L +D + +  + EK         L+ +L  
Sbjct: 139 ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAV--SLEELLKN 196
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++  +++  + + D  +   MK  V+IVN +R   ++ +A++D    G +  Y+ 
Sbjct: 197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYAT 256
Query: 153 DVWNPQPAPKDHPWRYMPNQ--AMTPHVSGTTIDAQLRYA 190
           DV+  +P  ++     + ++   +T H+   T +AQ R A
Sbjct: 257 DVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVA 296

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           + G  +G VG G +GK L + L  F   +   D       LE E G +    L+ +L K 
Sbjct: 174 IAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLE-ENGVE-PASLEDVLTKS 231
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D + V   +T + +     +  +  ++G   +  +R  ++D  A+  A SSGHI   S D
Sbjct: 232 DFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-D 290
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
           V+  +P P DHP R +     + H +G 
Sbjct: 291 VYPEEPLPLDHPVRSLKGFIRSAHRAGA 318

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT 88
           L+G+T+  +G G IG+ +    K F   +L   R            A F++      L+ 
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSR-------SGRERAGFDQVYQLPALNK 190
Query: 89  MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148
           ML + D++V   P T +T  +F   R    K G ++ N  RG  ++   ++ A  +G + 
Sbjct: 191 MLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG 250
Query: 149 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTI 183
               DV+  +P P D P    PN  +TPH S  + 
Sbjct: 251 MAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSF 285

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 11/168 (6%)
Query: 30  RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 89
           R  DL  +T G VG G++G  L++ L+     +L  D     P+  +E   +F   L+ +
Sbjct: 110 RGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCD----PPRQAREPDGEFVS-LERL 164
Query: 90  LPKCDIVVVNTPLTEK----TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L + D++ ++TPL       TR + D+ R+A ++ G  +VN +RGA++D QA+      G
Sbjct: 165 LAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGG 224
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGV 193
                + DVW  +  P+  P         TPH++G +++ +LR  A +
Sbjct: 225 ADLEVALDVWEGE--PQADPELAARCLIATPHIAGYSLEGKLRGTAQI 270

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 11/161 (6%)
Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           + L  +T+G VG G +G  L  RL+      L  D     P+  +     F   LD ++ 
Sbjct: 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCD----PPRAARGDEGDFRT-LDELVQ 169
Query: 92  KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
           + D++  +TPL +    KT  + D+  I ++K G +++N  RG ++D  A++   ++G  
Sbjct: 170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 188
                DVW  +P         +     T H++G T++ + R
Sbjct: 230 LSVVLDVWEGEPDLNVALLEAV--DIGTSHIAGYTLEGKAR 268

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           + +V   PLT  T  +F  +   + K+  +++N  RG  +DT A++ A     ++  + D
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           V  P+P P DHP     +  +TPH+SG
Sbjct: 253 VTEPEPLPTDHPLWQRDDVLITPHISG 279

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 56  KPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115
           K F   ++ + R  +D  ++        E    +  + D V++  PLT+KTRG  +   +
Sbjct: 142 KAFGXRVIAYTRSSVDQNVDV-----ISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLL 196
Query: 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175
           A  +K + IVN AR  ++     +          Y  DVW  +P   +   R   N  ++
Sbjct: 197 ANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITETNLR---NAILS 253
Query: 176 PHVSG 180
           PHV+G
Sbjct: 254 PHVAG 258

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           ++G+ V  +G G IG  + + L      +    R        KE   +F   L+  L + 
Sbjct: 122 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP------KEGPWRFTNSLEEALREA 175
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
              V   PL + TRG+     +A   +  + VN  R  ++D   V+          ++ D
Sbjct: 176 RAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASD 235
Query: 154 V-WNPQPAPKDHPWRYMPNQAMTPHVSG 180
           V W      KD  +  +PN   TP V+G
Sbjct: 236 VWWGRNDFAKDAEFFSLPNVVATPWVAG 263

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-118
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	1e-112
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	1e-106
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	2e-61
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	4e-60
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	5e-59
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	5e-59
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-58
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	2e-58
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	2e-58
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	5e-58
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	7e-58
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	5e-56
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	2e-55
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	9e-55
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	2e-54
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	5e-54
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	5e-54
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	9e-52
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	1e-51
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	3e-51
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	4e-51
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	4e-51
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-50
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	4e-50
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	2e-49
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	9e-49
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	6e-48
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	1e-46
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	4e-46
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	2e-44
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	4e-44
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	4e-18
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	3e-04

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  338 bits (869), Expect = e-118
 Identities = 185/223 (82%), Positives = 206/223 (92%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 188

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 248

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 249 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 308

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 223
           TTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 309 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 351

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  325 bits (834), Expect = e-112
 Identities = 106/221 (47%), Positives = 137/221 (61%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 215

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 216 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 275

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQ 221
           TT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA  
Sbjct: 336 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALAGT 376

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  308 bits (792), Expect = e-106
 Identities = 110/228 (48%), Positives = 152/228 (66%), Gaps = 7/228 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 188

Query: 61  N-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N      AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308

Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELAPQ 221
           TPH SGTT+DAQ RYA G  ++L+ +F G+ D+  Q+ I+  GE   +
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTK 356

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  194 bits (495), Expect = 2e-61
 Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 8/212 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
            + L R+       V SG++      +    L+  TVG +G G IG  +  RL+ +   L
Sbjct: 112 AVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATL 171

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            YH+   +D Q E+  G +       +    D +++  PL   T  + + + +A ++ G 
Sbjct: 172 QYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGA 230

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-------WNPQPAPKDHPWRYMPNQAMT 175
           L+VN  RG+++D  AV+ A   G + GY+ DV          +P   D      PN   T
Sbjct: 231 LLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFT 290

Query: 176 PHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
           PH+       +L         + +   GE   
Sbjct: 291 PHIGSAVRAVRLEIERCAAQNILQALAGERPI 322

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  189 bits (482), Expect = 4e-60
 Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 13/209 (6%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   +N L  +  + +G +           L GK +G +G G IG+ +    K F   +
Sbjct: 93  LLAHAKNILENNELMKAGIFR----QSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRV 148

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + + R      +++      E     +  + D V++  PLT+KTRGM +   +A  +K +
Sbjct: 149 IAYTRS----SVDQNVDVISE-SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNL 203

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            IVN AR  ++    ++          Y  DVW  +P   +     + N  ++PHV+G  
Sbjct: 204 TIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETN---LRNAILSPHVAGGM 260

Query: 183 IDAQLRYAAGV-KDMLDRYFKGEDFPVQN 210
               +  A  +  + +  +F+GE     +
Sbjct: 261 SGEIMDIAIQLAFENVRNFFEGEGHHHHH 289

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  187 bits (476), Expect = 5e-59
 Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 14/211 (6%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   +  +    ++  G++           ++G+ V  +G G IG  + + L      +
Sbjct: 94  LLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQV 150

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
               R        KE   +F   L+  L +    V   PL + TRG+     +A M +  
Sbjct: 151 RGFSRT------PKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDA 204

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-WNPQPAPKDHPWRYMPNQAMTPHVSGT 181
           + VN  R  ++D   V+          ++ DV W      KD  +  +PN   TP V+G 
Sbjct: 205 VFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGG 264

Query: 182 TIDAQLRYAAG--VKDMLDRYFKGEDFPVQN 210
             + ++           L  Y  G     +N
Sbjct: 265 YGNERVWRQMVMEAVRNLITYATGG--RPRN 293

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  187 bits (477), Expect = 5e-59
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 2/206 (0%)

Query: 3   ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R    G   + +  W     +      L+ KT+G  G G IG+ L +R + F+ +
Sbjct: 112 LLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMD 171

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + Y D  +     E    A F + LD++L       +N P T +TR  F+K  I  + +G
Sbjct: 172 IDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG 231

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            ++VN ARG ++D + VV A  +G +A    DV+  +P   +  +  +PN  + PH+   
Sbjct: 232 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSA 290

Query: 182 TIDAQLRYAAGVKDMLDRYFKGEDFP 207
              A+   A    D++D  F G D  
Sbjct: 291 ATQAREDMAHQANDLIDALFGGADMS 316

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  187 bits (477), Expect = 1e-58
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 7/212 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWN-----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQR-LK 56
           IL + R          +G+          +   A++  G  +G VG G I K + ++ + 
Sbjct: 125 ILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVH 184

Query: 57  PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116
                L+Y+D    D + EK  GA+  + L+ +  + D V V+ P  + T  + D+   A
Sbjct: 185 GLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFA 244

Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTP 176
            MK G  IVN ARG ++   A++ A  SG +     DV   +P         M +  +T 
Sbjct: 245 AMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVTLTT 303

Query: 177 HVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPV 208
           H+ G  I+    +       +DR+       +
Sbjct: 304 HIGGVAIETFHEFERLTMTNIDRFLLQGKPLL 335

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  187 bits (476), Expect = 2e-58
 Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 7/208 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWN-----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           IL L R     H  +  G        +  VA  A  + G+T+G +G GR+G+ +  R K 
Sbjct: 130 ILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKA 189

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F  N+L++D   +   +E+  G +    L  +L   D V ++  L E    + +   + +
Sbjct: 190 FGFNVLFYDP-YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 248

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKDHPWRYMPNQAMTP 176
           M++G  +VN ARG ++D +A+  A   G I G + DV   +P +    P +  PN   TP
Sbjct: 249 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 308

Query: 177 HVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
           H +  +  A +         + R   G 
Sbjct: 309 HAAWYSEQASIEMREEAAREIRRAITGR 336

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  185 bits (472), Expect = 2e-58
 Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 4/201 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +  + R       ++  G W          +LEGKT+G +G GRIG  + +       N+
Sbjct: 111 MFSVARKIAFADRKMREGVWAKK--EAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNI 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D    + +  KE   KF  DL+T+L + D+V ++ PL E T  + +++R+  MKK  
Sbjct: 169 LLYDPY-PNEERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTA 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N +RG ++DT A+V A   G IAG   DV+  +P PKDHP     N  +TPH+  +T
Sbjct: 227 ILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGAST 286

Query: 183 IDAQLRYAAGVKDMLDRYFKG 203
           ++AQ R    V + + +  KG
Sbjct: 287 VEAQERAGVEVAEKVVKILKG 307

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  185 bits (472), Expect = 5e-58
 Identities = 73/210 (34%), Positives = 116/210 (55%), Gaps = 8/210 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRA-----YDLEGKTVGTVGCGRIGKLLLQRLKP 57
           +L   R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K 
Sbjct: 112 LLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKG 171

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           FN  +LY+ R     ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+  
Sbjct: 172 FNMRILYYSR-TRKEEVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKL 229

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 177
           MKK  +++N ARG ++DT A+V A   G IAG   DV+  +P   +     + N  +TPH
Sbjct: 230 MKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPH 288

Query: 178 VSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
           +   +  A+   A  V   L  + +GE  P
Sbjct: 289 IGSASFGAREGMAELVAKNLIAFKRGEIPP 318

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  185 bits (471), Expect = 7e-58
 Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 7/209 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWN----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
           I+ L+R        +  GEW     +     R   L GK VG +G G IGK + +RL PF
Sbjct: 109 IINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPF 168

Query: 59  NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
              L Y  R      +EKE  A++  D+D +L K DIV++  PLT  T  + +++R+ K+
Sbjct: 169 GVKLYYWSR-HRKVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKL 226

Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
           + G  +VN  RGA++D +AV +A   G + GY+ DV+  +P  +   ++Y     +TPH 
Sbjct: 227 E-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHY 285

Query: 179 SGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
           +G  ++AQ        + L +  +GE   
Sbjct: 286 AGLALEAQEDVGFRAVENLLKVLRGEVPE 314

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  180 bits (458), Expect = 5e-56
 Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 5/208 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L +VR +                +      L G+ +   G G+IG+ L  +      ++
Sbjct: 106 MLSVVRGYHAAWLNQRGARQWALPMTTS--TLTGQQLLIYGTGQIGQSLAAKASALGMHV 163

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +  +     P         F       L   + +V   PLT  T  +F  +   + K+  
Sbjct: 164 IGVNT-TGHPADHFHETVAFT-ATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQP 221

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N  RG  +DT A++ A     ++  + DV  P+P P DHP     +  +TPH+SG  
Sbjct: 222 MLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQI 281

Query: 183 IDAQLRYAAGVKDMLDRYFKGEDFPVQN 210
              +            ++ K     V+N
Sbjct: 282 AHFRATVFPIFAANFAQFVKDGT-LVRN 308

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  178 bits (455), Expect = 2e-55
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 2/206 (0%)

Query: 3   ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R       +V +G W     +    Y L   TVG +G GRIG+ + +RLKPF   
Sbjct: 121 LLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 180

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
              +   +  P+   E  A+F      +  + D +VV   LT  T G+ +KD   KMK+ 
Sbjct: 181 RFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKET 239

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            + +N +RG +++   +  A +SG IA    DV +P+P P +HP   + N  + PH+   
Sbjct: 240 AVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSA 299

Query: 182 TIDAQLRYAAGVKDMLDRYFKGEDFP 207
           T   +   +    + L    +GE  P
Sbjct: 300 THRTRNTMSLLAANNLLAGLRGEPMP 325

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  177 bits (452), Expect = 9e-55
 Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 9/210 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAY--------DLEGKTVGTVGCGRIGKLLLQR 54
           ++   R        +  G W  +G+              L+G+T+G  G G+IG+L+   
Sbjct: 119 VMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGY 178

Query: 55  LKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114
            + F  N+L   R +   +  +  G    E  D +  + D++ V+  L ++TR +     
Sbjct: 179 GRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVAD 237

Query: 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 174
           + +MK   L VN +R  +++   +V A + G     + DV+  +P  + H    M N   
Sbjct: 238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC 297

Query: 175 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
           TPH+     ++   Y       +    +G 
Sbjct: 298 TPHIGYVERESYEMYFGIAFQNILDILQGN 327

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  176 bits (448), Expect = 2e-54
 Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    
Sbjct: 134 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKT 191

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D + + P++    G +    L+ + P CD + V+TPL   T G+ + +  A+ KKGV
Sbjct: 192 IGYDPI-ISPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGV 249

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T
Sbjct: 250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGAST 308

Query: 183 IDAQLRYAAGVKDMLDRYFKGEDFPVQN 210
            +AQ R    +        KG+   +  
Sbjct: 309 KEAQSRCGEEIAVQFVDMVKGK--SLTG 334

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  174 bits (444), Expect = 5e-54
 Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 8/204 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           ++   R          SG +          +L GKT+G VG GRIG  +          +
Sbjct: 113 MIAAARKMYTSMALAKSGIFK----KIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D +    +  ++  AK    L+ +L   D++ ++  +++  + + D  +   MK  V
Sbjct: 169 LAYDIL-DIREKAEKINAKAV-SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNV 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH--PWRYMPNQAMTPHVSG 180
           +IVN +R   ++ +A++D    G +  Y+ DV+  +P  ++            +T H+  
Sbjct: 227 IIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGA 286

Query: 181 TTIDAQLRYAAGVKDMLDRYFKGE 204
            T +AQ R A      L    K  
Sbjct: 287 QTKEAQKRVAEMTTQNLLNAMKEL 310

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  174 bits (443), Expect = 5e-54
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 9/206 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L + R  + G      G W           DL+G T+G VG GRIG+ + +R   F   
Sbjct: 110 LLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMR 169

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           ++YH R        K     F   L+ +L + D+V ++TPLT +T  + +++R+  MK+G
Sbjct: 170 VVYHART------PKPLPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRG 222

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            +++N ARGA++DT+A+V+A   GH+ G   DV +P+P P  HP   +PN  +TPH+   
Sbjct: 223 AILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSA 281

Query: 182 TIDAQLRYAAGVKDMLDRYFKGEDFP 207
               + R A    + L    +G + P
Sbjct: 282 GRTTRERMAEVAVENLLAVLEGREPP 307

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  174 bits (442), Expect = 9e-52
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   R        +    W  +  ++   ++ GKTVG VG GRIG+L+ QR+  F   +
Sbjct: 111 LLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D   + P    + G +    LD +L + D + V+ P T +T G+ DK+ +AK K GV
Sbjct: 169 VAYDPY-VSPARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +IVN ARG ++D  A+ DA + GH+     DV+  +P   D P   +    +TPH+  +T
Sbjct: 227 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGAST 285

Query: 183 IDAQLRYAAGVKDMLDRYFKGEDFP 207
            +AQ R    V + +     GE  P
Sbjct: 286 AEAQDRAGTDVAESVRLALAGEFVP 310

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  167 bits (426), Expect = 3e-51
 Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 21/227 (9%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
              ++R       +V   +   A       ++  + VG VG G IG++ +Q ++ F   +
Sbjct: 115 AARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKV 172

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D  + +P+LEK+ G   +  LD +  + D++ ++ P       M + + IAKMK+ V
Sbjct: 173 ITYDIFR-NPELEKK-GYYVD-SLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDV 229

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-------------NPQPAPKDHPWRYM 169
           +IVN +RG ++DT AV+    SG I GY+ DV+                P  +       
Sbjct: 230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 289

Query: 170 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG 216
           PN  +TP  +  T  A         D      +G++       VK G
Sbjct: 290 PNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAE---TPVKVG 333

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  168 bits (427), Expect = 4e-51
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 4/203 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R        V SG W            L G+ +G  G GRIG+ +  R + F   
Sbjct: 139 VLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLA 198

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + YH+R ++      E GA + + LD++L   DI ++  P   + +G  D DRIAK+ +G
Sbjct: 199 IHYHNRTRLSH--ALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            +++N +RG +++  A+++A  S H+     DV+  +PA  D  +R + N  +TPH+   
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAI-DPRYRSLDNIFLTPHIGSA 315

Query: 182 TIDAQLRYAAGVKDMLDRYFKGE 204
           T + +      +   ++   + +
Sbjct: 316 THETRDAMGWLLIQGIEALNQSD 338

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  169 bits (431), Expect = 4e-51
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 10/206 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L+L+R     + +   G  N   +A  +++  GK +G +G G IG  L    +     +
Sbjct: 114 LLLLLRGVPEANAKAHRGVGN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYV 171

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            ++D      +L      + +  L  +L   D+V ++ P    T+ M     I+ MK G 
Sbjct: 172 YFYDIE---NKLPLGNATQVQ-HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 227

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHV 178
           L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P     N  +TPH+
Sbjct: 228 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 287

Query: 179 SGTTIDAQLRYAAGVKDMLDRYFKGE 204
            G+T +AQ      V   L +Y    
Sbjct: 288 GGSTQEAQENIGLEVAGKLIKYSDNG 313

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  167 bits (426), Expect = 2e-50
 Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 10/206 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L+R   P      +G W     A  + ++ GKT+G VG G IG  +    +     +
Sbjct: 125 IIMLMRRIFPRSVSAHAGGWE--KTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTV 182

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y+D              K    LD +L   D+V ++ P ++ T  +  + ++ KMKKG 
Sbjct: 183 RYYDTSDKLQYG----NVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGA 238

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK----DHPWRYMPNQAMTPHV 178
            ++NNARG+ +D +A+      GH+AG + DV+  +PA        P + + N  +TPH+
Sbjct: 239 FLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHI 298

Query: 179 SGTTIDAQLRYAAGVKDMLDRYFKGE 204
            G+T +AQ R    V   L  Y    
Sbjct: 299 GGSTEEAQERIGTEVTRKLVEYSDVG 324

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  165 bits (419), Expect = 4e-50
 Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 18/220 (8%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
              L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++  K F  
Sbjct: 111 TDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGA 169

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++ +D     P         +   L+ +  + D++ ++ P  E+   + ++     MK 
Sbjct: 170 KVIAYDPY---PMKGDHPDFDYV-SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP 225

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-------------NPQPAPKDHPWR 167
           G +++N AR  ++DTQA++    SG +AG   D +                  P      
Sbjct: 226 GAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELL 285

Query: 168 YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
            MPN  ++PH++  T  A           L  +    +  
Sbjct: 286 GMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETS 325

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  163 bits (414), Expect = 2e-49
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 19/219 (8%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
            ++L+R+      +     + V      + ++   TVG VG GRIG++  Q        +
Sbjct: 114 AMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATV 172

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +  D          E        LD +L K DI+ ++ P  ++   +  +D + KMK G 
Sbjct: 173 IGEDVF---EIKGIEDYCTQV-SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGA 228

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQPAPKDHPWRYM-- 169
           ++VN ARG ++DT+AV++A  SG + GY  DV              Q        + +  
Sbjct: 229 ILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDL 288

Query: 170 -PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
            P   +TPH+   T +A           L    +  D P
Sbjct: 289 YPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCP 327

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  161 bits (410), Expect = 9e-49
 Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 6/205 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L ++R    G   V  G W         +  +GK +G +G G+IG+ L  R + F  ++
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSV 197

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y +R  +             +    +    D++ V    +  T+ + D   +  +    
Sbjct: 198 RYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEG 252

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           ++VN ARG ++D  A+++A  SG IAG   DV+  +PA     +   PN  + PH    T
Sbjct: 253 IVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSAT 311

Query: 183 IDAQLRYAAGVKDMLDRYFKGEDFP 207
           ++ ++     V   L  +F GE  P
Sbjct: 312 VETRMAMGKLVLANLAAHFAGEKAP 336

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  159 bits (404), Expect = 6e-48
 Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 7/205 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL ++R        V  G W   G         GK VG +G GRIG  + +R + F+C +
Sbjct: 132 ILAVLRRICECDKYVRRGAWK-FGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y  R K        T   +   +  +    DI+VV  PLT +T  + +++ I  +    
Sbjct: 191 SYFSRSKKP-----NTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG 245

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N  RG  +D   +V A   G + G   DV+  +P         + N  + PHV   T
Sbjct: 246 VLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGT 304

Query: 183 IDAQLRYAAGVKDMLDRYFKGEDFP 207
           ++ +   A  V   L+ +F G+   
Sbjct: 305 VETRKVMADLVVGNLEAHFSGKPLL 329

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  157 bits (399), Expect = 1e-46
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 11/177 (6%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           + L  +T+G VG G +G  L  RL+      L  D     P+  +     F   LD ++ 
Sbjct: 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDP----PRAARGDEGDFR-TLDELVQ 169

Query: 92  KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
           + D++  +TPL +    KT  + D+  I ++K G +++N  RG ++D  A++   ++G  
Sbjct: 170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229

Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
                DVW  +P   +       +   T H++G T++ + R    V +    +   E
Sbjct: 230 LSVVLDVWEGEP-DLNVALLEAVDIG-TSHIAGYTLEGKARGTTQVFEAYSAFIGRE 284

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  155 bits (395), Expect = 4e-46
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)

Query: 29  YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT 88
            R  DL  +T G VG G++G  L++ L+     +L  D     P+  +E   +F   L+ 
Sbjct: 109 VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDP----PRQAREPDGEFV-SLER 163

Query: 89  MLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144
           +L + D++ ++TPL       TR + D+ R+A ++ G  +VN +RGA++D QA+      
Sbjct: 164 LLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEG 223

Query: 145 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 204
           G     + DVW  +P     P         TPH++G +++ +LR  A +      +    
Sbjct: 224 GADLEVALDVWEGEPQA--DPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIA 281

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  150 bits (380), Expect = 2e-44
 Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 10/208 (4%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             +L L+R       Q     W     ++    L+G+T+  +G G IG+ +    K F  
Sbjct: 109 GHLLSLMRQLPLYREQQKQRLWQ----SHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGM 164

Query: 61  NLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
            +L   R  +     ++         L+ ML + D++V   P T +T  +F   R    K
Sbjct: 165 KVLGVSRSGRERAGFDQVYQ---LPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCK 221

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
            G ++ N  RG  ++   ++ A  +G +     DV+  +P P D P    PN  +TPH S
Sbjct: 222 PGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNS 281

Query: 180 GTTIDAQLRYAAGVKDMLDRYFKGEDFP 207
             +    +  A        R+  G+   
Sbjct: 282 AYSFPDDV--AQIFVRNYIRFIDGQPLD 307

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  149 bits (378), Expect = 4e-44
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 10/206 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   R F           W         Y  E  +VG +G G +G  + + L+ +   L
Sbjct: 110 VLHWFRRFDDYQALKNQALWK----PLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPL 165

Query: 63  LYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
               R  K  P +E   G    E+L   L +  +++   P T +T G+ + + + ++  G
Sbjct: 166 RCWSRSRKSWPGVESYVG---REELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDG 222

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
             ++N ARG  +    ++ A  SG + G   DV++ +P P++ P    P  AMTPH++  
Sbjct: 223 AYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAV 282

Query: 182 TIDAQLRYAAGVKDMLDRYFKGEDFP 207
           T  A+      +   + +  KGE   
Sbjct: 283 TRPAEA--IDYISRTITQLEKGEPVT 306

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 80.0 bits (197), Expect = 4e-18
 Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 17/165 (10%)

Query: 5   ILVRNFLPGHHQVISGEWNVAGVAYRAYD--LEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           ++ R+ +  ++ + + E  +  +A +  D  + G  V  +G GR+G  + ++       +
Sbjct: 123 LMERDDIAIYNSIPTAEGTIM-MAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKV 181

Query: 63  LYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
               R         E G +          L   D+ +   P       +   + +A+M  
Sbjct: 182 KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPAL-----VVTANVLAEMPS 236

Query: 121 GVLIVNNARG--AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD 163
              +++ A          A      +  + G  G V     APK 
Sbjct: 237 HTFVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIV-----APKT 276

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Length = 387

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 18/75 (24%)

Query: 39  VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEK------ETGAKFEEDLDT 88
            G  G G  G +L+         + +H   +     DP  +       E G      L  
Sbjct: 5   FGICGLGFAGSVLMAPA------MRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAE 58

Query: 89  ML--PKCDIVVVNTP 101
           M+   + D V + +P
Sbjct: 59  MMQHVQMDAVYIASP 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.97
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.97
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.85
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.82
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.79
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.74
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.72
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.67
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.65
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.65
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.64
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.61
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.59
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.58
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.58
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.57
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.57
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.57
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.57
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.56
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.54
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.54
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.52
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.51
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.5
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.5
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.5
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.49
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.48
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.42
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.41
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.41
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.4
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.4
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.39
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.38
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.36
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.36
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.35
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.35
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.34
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.33
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.33
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.33
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.32
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.32
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.32
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.31
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.31
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.29
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.28
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.25
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.25
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.24
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.23
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.22
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.19
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.18
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.79
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.16
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.16
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.16
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.15
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.15
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.14
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	99.11
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.11
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.11
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.11
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.08
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.07
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.07
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.04
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.02
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.01
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.01
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.0
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.0
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.98
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.97
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.95
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.94
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.93
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.92
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.91
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.91
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.91
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.91
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.9
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.89
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.89
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.87
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.85
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.84
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.84
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.83
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.79
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.79
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.79
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.79
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.76
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.74
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.73
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.71
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.7
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.7
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.68
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.68
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.67
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.67
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.66
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.65
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.63
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.63
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.62
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.62
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.61
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.61
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.59
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.58
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.57
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.57
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.57
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.57
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.56
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.55
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.55
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.54
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.54
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.53
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.52
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.51
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.49
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.46
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.45
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.45
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.44
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.43
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.42
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.42
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.42
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.41
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.4
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.38
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.37
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.37
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.36
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.36
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.36
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.35
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	98.34
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.33
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.33
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.32
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.32
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.32
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.31
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.3
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.3
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.3
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.28
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.26
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.26
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.26
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.25
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.25
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.22
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.22
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	98.21
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.21
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.17
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.16
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.16
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.15
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.15
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.15
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.15
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.14
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.13
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.13
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.12
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.12
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.11
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.1
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.1
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.09
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.06
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.06
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.06
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.05
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.04
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.04
4had_A	350	Probable oxidoreductase protein; structural genomi	98.02
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.02
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.02
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	98.0
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	97.99
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.99
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.99
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.98
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.98
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.97
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.97
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.95
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.94
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.93
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.92
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.92
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.91
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.91
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.91
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.9
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.89
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.89
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.89
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.87
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.86
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.85
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.84
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	97.84
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.84
4h3v_A	390	Oxidoreductase domain protein; structural genomics	97.84
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.84
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.83
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	97.83
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.82
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.81
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.81
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	97.8
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	97.78
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.78
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.78
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.76
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.74
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.74
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.74
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.73
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.72
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.72
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	97.72
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.71
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.71
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.71
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.7
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.68
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.67
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.66
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.66
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.66
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.65
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.65
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	97.65
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.64
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.64
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	97.64
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.64
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.63
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.62
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.6
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.6
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	97.6
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	97.6
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.6
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	97.59
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.59
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	97.58
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.58
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.57
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	97.57
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	97.56
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.56
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.54
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.54
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.54
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	97.52
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	97.52
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	97.52
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.52
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.51
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	97.51
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.5
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.49
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.49
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.49
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	97.49
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.48
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.48
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	97.48
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.48
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.47
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.47
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	97.47
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	97.46
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.46
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.45
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.44
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.44
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.44
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.44
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.43
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.42
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.42
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.42
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.42
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	97.39
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.39
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.39
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	97.37
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.37
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.36
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	97.35
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.34
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.33
1lnq_A	336	MTHK channels, potassium channel related protein;	97.32
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.32
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.31
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.31
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.31
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	97.29
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.29
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.29
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.29
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.26
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.26
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.26
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.26
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	97.26
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.25
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.24
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.24
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.23
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.23
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.23
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	97.22
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	97.22
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.22
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	97.21
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.21
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.19
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.19
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.19
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	97.18
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.18
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.18
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	97.18
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.17
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	97.17
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.17
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.17
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.16
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.16
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.16
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	97.15
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.15
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.14
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.14
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.13
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	97.13
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.13
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	97.13
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.13
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.12
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.12
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.09
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	97.09
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.09
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.08
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	97.08
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.08
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.08
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.08
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.06
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	97.06
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	97.04
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	97.04
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.04
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	97.03
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	97.02
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.01
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	97.01
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.0
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.99
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.97
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.97
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.96
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.96
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.96
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.95
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.95
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	96.94
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.94
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.94
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	96.92
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.91
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	96.9
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.89
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.88
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.87
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.87
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.86
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.85
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.84
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.84
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.84
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.83
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.83
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.82
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	96.82
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.81
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.81
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.81
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.81
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.8
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.8
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.79
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.78
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.77
3on5_A	362	BH1974 protein; structural genomics, joint center	96.77
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	96.76
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.76
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.75
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.75
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.75
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.74
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.74
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.73
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.73
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.73
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.73
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.73
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.71
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.7
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.7
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.69
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.67
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	96.63
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.61
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.6
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.6
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.59
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.58
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.58
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.57
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.57
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	96.55
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	96.54
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	96.53
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.53
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.52
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.51
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.5
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.5
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.49
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.49
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.49
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.48
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.47
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.46
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.45
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.45
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	96.45
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.44
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.43
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.43
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	96.43

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.6e-56  Score=392.61  Aligned_cols=223  Identities=83%  Similarity=1.388  Sum_probs=210.8

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|........+.+|.|++|||||+|.||+.+|+++++||++|++|||++...+.+...|+
T Consensus       129 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~  208 (351)
T 3jtm_A          129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGA  208 (351)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCC
T ss_pred             HHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCC
Confidence            57999999999999999999998543223467999999999999999999999999999999999998766677777888


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ..++++++++++||+|++|+|++++|+++++++.++.||+|++|||++||+++|+++|+++|++|+|.||+||||++||+
T Consensus       209 ~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~  288 (351)
T 3jtm_A          209 KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPA  288 (351)
T ss_dssp             EECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred             eEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCC
Confidence            87789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCcCCCCC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR  223 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~~~~~~  223 (223)
                      +.++|||.+|||++|||+|++|.+++.++...+.+|+.+|++|++..+.|+|+.+|+++++||
T Consensus       289 ~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~~~~~~~i~~~~~~~~~~~  351 (351)
T 3jtm_A          289 PKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR  351 (351)
T ss_dssp             CTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEECGGGC
T ss_pred             CCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCceEEecCCccccccC
Confidence            999999999999999999999999999999999999999999998889999999999999997

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=1.5e-52  Score=366.43  Aligned_cols=208  Identities=27%  Similarity=0.493  Sum_probs=190.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (223)
                      ++||++.|++..+++.+++|.|.... ....+.+|.|++|||||+|.||+.+|+++++||++|++|||++...+...  +
T Consensus       137 ~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g  214 (345)
T 4g2n_A          137 LLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--G  214 (345)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--T
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--C
Confidence            47999999999999999999997532 22347899999999999999999999999999999999999865444332  6


Q ss_pred             CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      +.+.+++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|++||+++|++|+|.||+||||++||
T Consensus       215 ~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP  294 (345)
T 4g2n_A          215 AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP  294 (345)
T ss_dssp             CEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             CeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence            77767999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceec
Q 027408          160 APKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIV  213 (223)
Q Consensus       160 ~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~  213 (223)
                       +.++|||.+|||++|||+|++|.++++++...+++||.+|++|+++  .|.|+
T Consensus       295 -~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~--~~~V~  345 (345)
T 4g2n_A          295 -AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVP--DNLIS  345 (345)
T ss_dssp             -SCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC--TTBCC
T ss_pred             -CCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCC--CCCcC
Confidence             7889999999999999999999999999999999999999999974  55553

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=1.3e-53  Score=372.18  Aligned_cols=209  Identities=28%  Similarity=0.400  Sum_probs=188.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++...++.++++.|.... ...+.+|.|+++||||+|+||+.+|+++++|||+|++||+...  +.....++
T Consensus       107 ~l~L~~~r~~~~~~~~~~~~~~~~~~-~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~--~~~~~~~~  183 (334)
T 3kb6_A          107 AMILTLVKRLKRIEDRVKKLNFSQDS-EILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKR--EDLKEKGC  183 (334)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHTTC
T ss_pred             HHHHHHhhcccccccccccccccccc-ccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccc--hhhhhcCc
Confidence            47899999999999999999987543 2357899999999999999999999999999999999998653  23344556


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      .. .++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|.||+||||++||+
T Consensus       184 ~~-~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl  262 (334)
T 3kb6_A          184 VY-TSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEI  262 (334)
T ss_dssp             EE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHH
T ss_pred             ee-cCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCC
Confidence            55 58999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC---------------CccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcceec
Q 027408          161 PKDH---------------PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIV  213 (223)
Q Consensus       161 ~~~~---------------~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n~~~  213 (223)
                      +.++               |||.+|||++|||+||+|.|+++++...+++||.+|++|++. .+.|.|+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n~v~  331 (334)
T 3kb6_A          263 LILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNFVV  331 (334)
T ss_dssp             HHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGGEEE
T ss_pred             cccccccccccccccccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCCcCC
Confidence            7666               578899999999999999999999999999999999999976 3566664

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=1.5e-52  Score=369.51  Aligned_cols=221  Identities=49%  Similarity=0.886  Sum_probs=202.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG   79 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g   79 (223)
                      ++||++.|++..+++.+++|.|........+.+|.|++|||||+|+||+.+|+++++||++ |++||+++...+.+...|
T Consensus       129 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g  208 (364)
T 2j6i_A          129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVG  208 (364)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTT
T ss_pred             HHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcC
Confidence            4799999999999999999999743222246799999999999999999999999999997 999999876666666778


Q ss_pred             CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      +....++++++++||+|++|+|++++|+++++++.++.||++++|||++||+++|+++|+++|++|+|.||+||||++||
T Consensus       209 ~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP  288 (364)
T 2j6i_A          209 ARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQP  288 (364)
T ss_dssp             EEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred             cEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCC
Confidence            77667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCC--C---CeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCC-CCCCcceeccCCCcCCC
Q 027408          160 APKDHPWRYM--P---NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELAPQ  221 (223)
Q Consensus       160 ~~~~~~l~~~--~---nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~-~~~~~n~~~~~~~~~~~  221 (223)
                      ++.++|||.+  |   ||++|||+|++|.++..++...+.+|+.+|++|+ |.++.|.|+.+++|.++
T Consensus       289 ~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~~n~v~~~~~y~~~  356 (364)
T 2j6i_A          289 APKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTK  356 (364)
T ss_dssp             CCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEBTTBC---
T ss_pred             CCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCceecCCcCcchh
Confidence            9999999999  9   9999999999999999999999999999999998 45889999999999886

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.6e-51  Score=358.67  Aligned_cols=211  Identities=25%  Similarity=0.409  Sum_probs=194.1

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|..+.....+.+|.|+||||||+|.||+.+|+++++||++|++|||++...+.+...|+
T Consensus       110 ~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          110 GLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTE
T ss_pred             HHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCc
Confidence            47999999999999999999997432233578999999999999999999999999999999999998755666666777


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC--
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ--  158 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e--  158 (223)
                      ... ++++++++||+|++|+|++++|.++++++.++.||+|++|||++||+++|+++|+++|++|+|.||+||||++|  
T Consensus       190 ~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~  268 (330)
T 4e5n_A          190 RQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDW  268 (330)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCT
T ss_pred             eeC-CHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccc
Confidence            655 89999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             -----CCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceecc
Q 027408          159 -----PAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK  214 (223)
Q Consensus       159 -----p~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~  214 (223)
                           |++.++|||.+|||++|||+|++|.|+.+++...+++||.+|++|+++  .|.||.
T Consensus       269 ~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~vn~  327 (330)
T 4e5n_A          269 ARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERP--INAVNR  327 (330)
T ss_dssp             TCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTSCC--TTBSSC
T ss_pred             cccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCCCC--CCccCC
Confidence                 999999999999999999999999999999999999999999999874  566654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=5.8e-52  Score=360.25  Aligned_cols=214  Identities=21%  Similarity=0.307  Sum_probs=188.3

Q ss_pred             CcHHHHHhCchHH-HHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC
Q 027408            1 MRILILVRNFLPG-HHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (223)
Q Consensus         1 ~~~l~~~R~~~~~-~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (223)
                      ++||++.|++..+ ++.+++|.|.+..   .+++|.|+||||||+|.||+.+|+++++||++|++|||++...+....  
T Consensus       104 ~~~L~~~R~~~~~~~~~~~~~~W~~~~---~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--  178 (324)
T 3evt_A          104 AAMLSVVRGYHAAWLNQRGARQWALPM---TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--  178 (324)
T ss_dssp             HHHHHHHTTHHHHHHHHTTTCCSSCSS---CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--
T ss_pred             HHHHHHHhChhHHHHHHHhcCCcccCC---CCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--
Confidence            4799999999999 9999999998643   467999999999999999999999999999999999998643322211  


Q ss_pred             CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      .....++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|++.||+||||++||
T Consensus       179 ~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EP  258 (324)
T 3evt_A          179 TVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP  258 (324)
T ss_dssp             EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSS
T ss_pred             ccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCC
Confidence            12345899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCcCC
Q 027408          160 APKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP  220 (223)
Q Consensus       160 ~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~~~  220 (223)
                      ++.++|||.+|||++|||+|++|.++.+++...+++|+.+|++|++. +.|.|+++-+..+
T Consensus       259 l~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~-~~n~V~~~~~~~~  318 (324)
T 3evt_A          259 LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTL-VRNQVDLNRGYEG  318 (324)
T ss_dssp             CCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCC-CSCBCC-------
T ss_pred             CCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCC-CCceECcccccCC
Confidence            99999999999999999999999999999999999999999987643 5788888765543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=6.5e-51  Score=358.12  Aligned_cols=215  Identities=24%  Similarity=0.324  Sum_probs=189.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc-cCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGV-AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~-~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (223)
                      ++||++.|++..+++.+++|.|.+... ...+.+|.|+||||||+|.||+.+|+++++||++|++||++. ..+.+...|
T Consensus       140 ~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g  218 (365)
T 4hy3_A          140 GFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL-PRSMLEENG  218 (365)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS-CHHHHHHTT
T ss_pred             HHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCC-CHHHHhhcC
Confidence            479999999999999999999543221 234789999999999999999999999999999999999975 445555667


Q ss_pred             CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      +.. .++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|. |+||||++||
T Consensus       219 ~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EP  296 (365)
T 4hy3_A          219 VEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEP  296 (365)
T ss_dssp             CEE-CCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSS
T ss_pred             eee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCC
Confidence            765 48999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             CCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCcCC
Q 027408          160 APKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP  220 (223)
Q Consensus       160 ~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~~~  220 (223)
                      ++.++|||.+|||++|||+||+|.|++.++...+++||.+|++|+++  .|.+|.+-+.-+
T Consensus       297 l~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~~--~~~vn~~~~~~~  355 (365)
T 4hy3_A          297 LPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLPP--MRCKRAERETVS  355 (365)
T ss_dssp             CCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCCC--CSSEECCSCCC-
T ss_pred             CCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCc--ccccccchhhhh
Confidence            99999999999999999999999999999999999999999999986  345554433333

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=2.7e-51  Score=359.65  Aligned_cols=210  Identities=22%  Similarity=0.329  Sum_probs=192.4

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc--------ccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAG--------VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~--------~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~   72 (223)
                      ++||++.|++..+++.+++|.|....        ....+.+|.|+||||||+|.||+.+|+++++||++|++||++. ..
T Consensus       117 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~  195 (352)
T 3gg9_A          117 ALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGREN-SK  195 (352)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHH-HH
T ss_pred             HHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCC-CH
Confidence            47999999999999999999997632        1124689999999999999999999999999999999999974 33


Q ss_pred             hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEe
Q 027408           73 QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG  152 (223)
Q Consensus        73 ~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~l  152 (223)
                      +.+...|+...+++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|+|.||+|
T Consensus       196 ~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~l  275 (352)
T 3gg9_A          196 ERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAI  275 (352)
T ss_dssp             HHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEE
T ss_pred             HHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEe
Confidence            44556788777799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcce
Q 027408          153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNY  211 (223)
Q Consensus       153 Dv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~  211 (223)
                      |||++||++.++|||.+|||++|||+|++|.++.+++...+++||.+|++|+|.+.+|.
T Consensus       276 DV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~p~~~Vn~  334 (352)
T 3gg9_A          276 DVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNVDSVANP  334 (352)
T ss_dssp             CCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCTTBSCG
T ss_pred             cccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCcccCH
Confidence            99999999999999999999999999999999999999999999999999987654444

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=1.2e-51  Score=357.15  Aligned_cols=208  Identities=23%  Similarity=0.343  Sum_probs=185.4

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|...    .++++.|+||||||+|.||+.+|+++++||++|++|||++...+.....  
T Consensus       108 ~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--  181 (315)
T 3pp8_A          108 SQVLHWFRRFDDYQALKNQALWKPL----PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--  181 (315)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--
T ss_pred             HHHHHHHhCChHHHHHHHhcccCCC----CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--
Confidence            4799999999999999999999754    3578999999999999999999999999999999999976432211111  


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|++.||+||||++||+
T Consensus       182 ~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl  261 (315)
T 3pp8_A          182 VGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPL  261 (315)
T ss_dssp             ESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred             cccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCC
Confidence            11258999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCc
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGEL  218 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~  218 (223)
                      +.++|||.+|||++|||+|++|.+  .++...+++||.+|++|++  +.|.|+++-+|
T Consensus       262 ~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~~--~~~~V~~~~GY  315 (315)
T 3pp8_A          262 PQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEP--VTGQVDRARGY  315 (315)
T ss_dssp             CTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTCC--CCCBCCCC---
T ss_pred             CCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCCC--CCceECcccCC
Confidence            999999999999999999999986  5788899999999999997  47888887664

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=2.8e-51  Score=355.63  Aligned_cols=210  Identities=23%  Similarity=0.306  Sum_probs=185.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|...    .+.+|.|+||||||+|.||+.+|+++++||++|++|||++...+...  +.
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~  182 (324)
T 3hg7_A          109 GHLLSLMRQLPLYREQQKQRLWQSH----PYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QV  182 (324)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EE
T ss_pred             HHHHHHHhChHHHHHHHhhCCCcCC----CCcccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cc
Confidence            4799999999999999999999753    35699999999999999999999999999999999999763322211  12


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+
T Consensus       183 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl  262 (324)
T 3hg7_A          183 YQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPL  262 (324)
T ss_dssp             ECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSC
T ss_pred             cccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCC
Confidence            23468999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCcCC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP  220 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~~~  220 (223)
                      +.++|||.+|||++|||+|++|.+  .++...+++|+.+|++|++  +.|.|+++-.+.+
T Consensus       263 ~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~--~~~~V~~~~~~~~  318 (324)
T 3hg7_A          263 PADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQP--LDGKIDFDKGYEG  318 (324)
T ss_dssp             CTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCC--CTTBCCCC-----
T ss_pred             CCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCC--CcceEChhhhccc
Confidence            999999999999999999999976  4688899999999999997  4788887766654

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=2.1e-50  Score=358.02  Aligned_cols=220  Identities=48%  Similarity=0.857  Sum_probs=197.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|........+.+|.|++|||||+|.||+.+|+++++||++|++||++....+.+...|+
T Consensus       156 ~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~  235 (393)
T 2nac_A          156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL  235 (393)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC
T ss_pred             HHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCc
Confidence            47999999999999999999997422112357899999999999999999999999999999999998766666667788


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|++|||++||+++|+++|.++|++|+|.||+||||++||+
T Consensus       236 ~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~  315 (393)
T 2nac_A          236 TWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPA  315 (393)
T ss_dssp             EECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSC
T ss_pred             eecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCC
Confidence            76678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCcCC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP  220 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~~~  220 (223)
                      +.++|||.+||+++|||+|++|.++..++...+++||.+|++|+++.....+...|.+++
T Consensus       316 ~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~~~v~~~~~~~  375 (393)
T 2nac_A          316 PKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALAG  375 (393)
T ss_dssp             CTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEEC-
T ss_pred             CCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCcceeEeccCCcccc
Confidence            999999999999999999999999999999999999999999998633333345566553

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.1e-50  Score=352.28  Aligned_cols=200  Identities=25%  Similarity=0.408  Sum_probs=158.1

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||+++|++..+++.+++|.|........+.+|.|+||||||+|.||+.+|+++++||++|++|||++..     ..+.
T Consensus       136 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~  210 (340)
T 4dgs_A          136 ALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDW  210 (340)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCC
T ss_pred             HHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCc
Confidence            47999999999999999999998641112467999999999999999999999999999999999997643     2244


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|++++|+++++++.++.||+++++||++||+++|+++|+++|++|+|.||+||||++||+
T Consensus       211 ~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~  290 (340)
T 4dgs_A          211 IAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPA  290 (340)
T ss_dssp             EECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSS
T ss_pred             eecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCC
Confidence            55679999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~  206 (223)
                      +. +|||.+|||++|||+|++|.|+++++...+++||.+|++|+++
T Consensus       291 ~~-~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~  335 (340)
T 4dgs_A          291 IR-SEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKA  335 (340)
T ss_dssp             CC-SHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             Cc-cchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            76 4999999999999999999999999999999999999999985

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=1.8e-49  Score=353.42  Aligned_cols=207  Identities=29%  Similarity=0.465  Sum_probs=181.8

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||+++|++..+++.+++|.|.+..  ..+.+|+||||||||+|.||+.+|+++++|||+|++||+++...    ..+.
T Consensus       123 ~l~L~l~R~i~~~~~~~~~g~W~~~~--~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----~~~~  196 (416)
T 3k5p_A          123 GEIIMLMRRIFPRSVSAHAGGWEKTA--IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----YGNV  196 (416)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCC--TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----BTTB
T ss_pred             HHHHHHhcccHHHHHhhhcccccccC--CCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----ccCc
Confidence            47899999999999999999998654  24679999999999999999999999999999999999975322    1134


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|++||+++|++|++.||+||||+.||+
T Consensus       197 ~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~  276 (416)
T 3k5p_A          197 KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPA  276 (416)
T ss_dssp             EECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCS
T ss_pred             EecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC----CCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcceec
Q 027408          161 PKD----HPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIV  213 (223)
Q Consensus       161 ~~~----~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n~~~  213 (223)
                      +.+    +|||.+|||++|||+|++|.|+++++...+++|+.+|++++++ +.+|...
T Consensus       277 ~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~~~~~Vn~p~  334 (416)
T 3k5p_A          277 SNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNFPQ  334 (416)
T ss_dssp             STTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCTTBSSSCC
T ss_pred             CcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCceeeCCC
Confidence            765    7899999999999999999999999999999999999966553 5555443

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=1.3e-49  Score=347.71  Aligned_cols=207  Identities=23%  Similarity=0.295  Sum_probs=184.1

Q ss_pred             CcHHHHHhCchHHHHHHH-cCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC
Q 027408            1 MRILILVRNFLPGHHQVI-SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~-~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (223)
                      ++||++.|++..+++.++ +|.|.+.. ...+.+|.|+||||||+|.||+.+|+++++||++|++|||++.. .  ...+
T Consensus       113 ~l~L~~~R~~~~~~~~~~~~g~~~w~~-~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~--~~~~  188 (343)
T 2yq5_A          113 TQAMYLLRKIGEFRYRMDHDHDFTWPS-NLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP-E--FEPF  188 (343)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHCCCCCCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG-G--GTTT
T ss_pred             HHHHHHHhchHHHHHHHHHcCCccccc-CCCccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh-h--hhcc
Confidence            479999999999999999 89876422 23578999999999999999999999999999999999997642 1  1223


Q ss_pred             CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      +... ++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||
T Consensus       189 ~~~~-~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  267 (343)
T 2yq5_A          189 LTYT-DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGES  267 (343)
T ss_dssp             CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred             cccc-CHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence            4444 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             --CCCC-----------CCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceecc
Q 027408          160 --APKD-----------HPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK  214 (223)
Q Consensus       160 --~~~~-----------~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~  214 (223)
                        .+.+           +|||.+|||++|||+|++|.++.+++...+++||.+|++|+++  .|.|+.
T Consensus       268 ~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~--~~~v~~  333 (343)
T 2yq5_A          268 SYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQLTIAKGGRP--RSIVNL  333 (343)
T ss_dssp             GTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC--TTBC--
T ss_pred             CccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHHHHHHcCCCC--CceECC
Confidence              4454           4899999999999999999999999999999999999999985  454543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=2.9e-49  Score=352.45  Aligned_cols=207  Identities=27%  Similarity=0.397  Sum_probs=178.3

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||+++|++..+++.+++|.|.+..  ..+.+|+|||+||||+|.||+.+|+++++|||+|++|||++...    ..++
T Consensus       112 ~~~L~~~R~i~~~~~~~~~g~W~~~~--~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~  185 (404)
T 1sc6_A          112 GELLLLLRGVPEANAKAHRGVGNKLA--AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNA  185 (404)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTC
T ss_pred             HHHHHHHhChHHHHHHHHcCCccccC--CCccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----cCCc
Confidence            47999999999999999999997543  34679999999999999999999999999999999999975321    1135


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|+++|++|++.||+||||+.||+
T Consensus       186 ~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~  265 (404)
T 1sc6_A          186 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPA  265 (404)
T ss_dssp             EECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC------
T ss_pred             eecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCC
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC----CCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccC
Q 027408          161 PK----DHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA  215 (223)
Q Consensus       161 ~~----~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~  215 (223)
                      +.    ++|||.+|||++|||+|++|.|+++++...+++|+.+|++|+++  .|.||+.
T Consensus       266 ~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~--~~~vn~p  322 (404)
T 1sc6_A          266 TNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGST--LSAVNFP  322 (404)
T ss_dssp             ---CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCC--TTBSSSC
T ss_pred             CccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC--cceeccc
Confidence            64    47999999999999999999999999999999999999998764  5555544

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=1.7e-48  Score=340.08  Aligned_cols=207  Identities=24%  Similarity=0.348  Sum_probs=185.1

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|.+..  ..+.++.|++|||||+|.||+.+|++++++|++|++||++....  .... +
T Consensus       113 ~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~-~  187 (333)
T 1j4a_A          113 IQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEKK-G  187 (333)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTBCCCTT--CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHT-T
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCccCC--cccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHhh-C
Confidence            47999999999999999999996432  34679999999999999999999999999999999999976432  2232 4


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC-
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-  159 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep-  159 (223)
                      ....++++++++||+|++|+|++++|+++++++.++.||+++++||++||+++|+++|+++|++|+|.||+||||++|| 
T Consensus       188 ~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~  267 (333)
T 1j4a_A          188 YYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG  267 (333)
T ss_dssp             CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTT
T ss_pred             eecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC
Confidence            4445899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -CCCCC-----------CccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceecc
Q 027408          160 -APKDH-----------PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK  214 (223)
Q Consensus       160 -~~~~~-----------~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~  214 (223)
                       ++.++           |||.+|||++|||+|++|.++.+++...+++|+.+|++|+++  .|.|++
T Consensus       268 ~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~--~~~v~~  332 (333)
T 1j4a_A          268 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEA--ETPVKV  332 (333)
T ss_dssp             TTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC--SSBCCC
T ss_pred             ccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCC--CccccC
Confidence             34443           599999999999999999999999999999999999999874  566653

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=6.9e-48  Score=332.18  Aligned_cols=208  Identities=20%  Similarity=0.293  Sum_probs=188.4

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|....   ...+|.|++|||||+|.||+.+|++++++|++|++|||++. ..     +.
T Consensus        92 ~~~L~~~R~~~~~~~~~~~g~w~~~~---~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~-----~~  162 (303)
T 1qp8_A           92 ALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG-----PW  162 (303)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS-----SS
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCCCC---CCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc-----Cc
Confidence            47999999999999999999996431   23489999999999999999999999999999999999764 21     34


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC-CCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-NPQP  159 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~-~~ep  159 (223)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|.++|++|++.||++||| ++||
T Consensus       163 ~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep  242 (303)
T 1qp8_A          163 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRND  242 (303)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTC
T ss_pred             ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCC
Confidence            445689999999999999999999999999999999999999999999999999999999999999999999999 8899


Q ss_pred             CCCCCCccCCCCeEEccCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCCCcCC
Q 027408          160 APKDHPWRYMPNQAMTPHVSGT--TIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP  220 (223)
Q Consensus       160 ~~~~~~l~~~~nv~~tPH~a~~--t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~~~~~  220 (223)
                      ++.++|||.++|+++|||++++  |.++.+++...+++|+.+|++|++  +.|.|+++ +|.+
T Consensus       243 ~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~--~~~~v~~~-~y~~  302 (303)
T 1qp8_A          243 FAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGR--PRNIAKRE-DYIG  302 (303)
T ss_dssp             CGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSC--CSCBCCGG-GTC-
T ss_pred             CCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCC--CCceeCHH-HcCC
Confidence            9989999999999999999998  999999999999999999999986  47778776 4443

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.2e-48  Score=339.38  Aligned_cols=208  Identities=23%  Similarity=0.379  Sum_probs=184.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCcc-CcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~-~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (223)
                      ++||++.|++..+++.+++|.|.+ ..  ..+.+|.|++|||||+|.||+.+|++++++|++|++||++....  ... .
T Consensus       111 ~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~  185 (333)
T 1dxy_A          111 TDTLYLLRNMGKVQAQLQAGDYEKAGT--FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--DHP-D  185 (333)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCHHHHTC--CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--CCT-T
T ss_pred             HHHHHHhhhHHHHHHHHHcCCcccccC--CCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--hHh-c
Confidence            479999999999999999999953 22  24679999999999999999999999999999999999976432  122 2


Q ss_pred             CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      +.. .++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|+++|++|+|.||+||||++||
T Consensus       186 ~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  264 (333)
T 1dxy_A          186 FDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET  264 (333)
T ss_dssp             CEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred             ccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence            343 4899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C--C--------CC---CCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccCC
Q 027408          160 A--P--------KD---HPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG  216 (223)
Q Consensus       160 ~--~--------~~---~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~~  216 (223)
                      +  +        ++   +|||.+|||++|||+|++|.++..++...+++|+.+|++|++  +.|.|+++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~~g~~--~~~~v~~~~  332 (333)
T 1dxy_A          265 EDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGE--TSTEVTGPA  332 (333)
T ss_dssp             HHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHHSC--CTTEECC--
T ss_pred             CcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHHcCCC--CCceeCCCC
Confidence            3  1        12   579999999999999999999999999999999999999986  467787764

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-47  Score=333.64  Aligned_cols=201  Identities=30%  Similarity=0.517  Sum_probs=181.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|.+..  ..+.+|.|++|||||+|.||+.+|++++++|++|++||++... +.+...|+
T Consensus       132 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~  208 (335)
T 2g76_A          132 GMIMCLARQIPQATASMKDGKWERKK--FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGV  208 (335)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCTGG--GCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTC
T ss_pred             HHHHHHHhchHHHHHHHHcCCCCccC--CCCcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCc
Confidence            47999999999999999999997532  2467999999999999999999999999999999999997643 44556677


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      .. .++++++++||+|++|+|++++|+++++++.++.||+|+++||++||+++|+++|+++|++|++.||+||||+.|| 
T Consensus       209 ~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP-  286 (335)
T 2g76_A          209 QQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-  286 (335)
T ss_dssp             EE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS-
T ss_pred             ee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCC-
Confidence            65 4899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~  206 (223)
                      +.++|||.+||+++|||++++|.++.+++...+++|+.+|++|+++
T Consensus       287 ~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~  332 (335)
T 2g76_A          287 PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSL  332 (335)
T ss_dssp             CSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            5678999999999999999999999999999999999999999875

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=6.4e-47  Score=331.43  Aligned_cols=213  Identities=27%  Similarity=0.394  Sum_probs=191.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc-----cCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~-----~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~   75 (223)
                      ++||++.|++..+++.+++|.|.....     ...+.+|.|++|||||+|.||+.+|++++++|++|++||++... ..+
T Consensus       128 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~  206 (347)
T 1mx3_A          128 CHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVE  206 (347)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT-THH
T ss_pred             HHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhH
Confidence            479999999999999999999964210     01236899999999999999999999999999999999997643 344


Q ss_pred             HhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        76 ~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ...|+..+.++++++++||+|++|+|++++|+++++++.++.||+|+++||++||+++|+++|.++|++|+|.||++|||
T Consensus       207 ~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~  286 (347)
T 1mx3_A          207 RALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH  286 (347)
T ss_dssp             HHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeec
Confidence            56677766789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-CCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC-CCcceecc
Q 027408          156 NPQPAP-KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIVK  214 (223)
Q Consensus       156 ~~ep~~-~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~-~~~n~~~~  214 (223)
                      +.||.+ .++||+.++|+++|||++++|.++.+++...+++|+.+|++|+++ ++.|.|++
T Consensus       287 ~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~l~~~v~~  347 (347)
T 1mx3_A          287 ESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNK  347 (347)
T ss_dssp             SSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTCSSBCC-
T ss_pred             ccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCCC
Confidence            999987 478999999999999999999999999999999999999999876 46787763

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.3e-47  Score=328.14  Aligned_cols=193  Identities=24%  Similarity=0.393  Sum_probs=177.8

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|.+..    ..+|.|+||||||+|.||+.+|++++++|++|++|||++...+.     +
T Consensus        91 ~~~L~~~R~~~~~~~~~~~g~w~~~~----~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~  161 (290)
T 3gvx_A           91 ALLLAHAKNILENNELMKAGIFRQSP----TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----D  161 (290)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCC----CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----S
T ss_pred             HHHHHHHHhhhhhhhHhhhcccccCC----ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----c
Confidence            47999999999999999999998643    36899999999999999999999999999999999998643321     4


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ...+++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|++.+|++|||++||+
T Consensus       162 ~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  241 (290)
T 3gvx_A          162 VISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE  241 (290)
T ss_dssp             EECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS
T ss_pred             cccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCccCCCCeEEccCCC-CCcHHHHHHHHHHHHHHHHHHHcCCC
Q 027408          161 PKDHPWRYMPNQAMTPHVS-GTTIDAQLRYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a-~~t~~~~~~~~~~~~~~i~~~~~g~~  205 (223)
                         +|||.+||+++|||+| ++|.++.+++...+++||.+|++|+-
T Consensus       242 ---~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          242 ---ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             ---CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             ---cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence               8999999999999999 99999999999999999999999874

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.9e-47  Score=327.00  Aligned_cols=199  Identities=33%  Similarity=0.572  Sum_probs=185.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|.+..  ..+.+|.|++|||||+|.||+.+|+.++++|++|++||+++.. +.+...|+
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~  185 (307)
T 1wwk_A          109 GLMFSVARKIAFADRKMREGVWAKKE--AMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNG  185 (307)
T ss_dssp             HHHHHHHTTHHHHHHHHTTTCCCTTT--CCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTC
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCccC--cCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCc
Confidence            47999999999999999999997422  2467999999999999999999999999999999999997744 45556777


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ... ++++++++||+|++|+|++++|+++++++.++.||+|+++||++||+++|+++|.++|++|++.||++|||+.||.
T Consensus       186 ~~~-~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~  264 (307)
T 1wwk_A          186 KFV-DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPL  264 (307)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSC
T ss_pred             ccc-CHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            654 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG  203 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g  203 (223)
                      +.++|||.++|+++|||++++|.++..++...+++|+.+|++|
T Consensus       265 ~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          265 PKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG  307 (307)
T ss_dssp             CTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence            8899999999999999999999999999999999999999976

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=3.1e-47  Score=331.92  Aligned_cols=205  Identities=26%  Similarity=0.412  Sum_probs=182.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|.+.. ...+.++.|++|||||+|.||+.+|++++++|++|++||++....  ... .+
T Consensus       112 ~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~  187 (331)
T 1xdw_A          112 TQAMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--IED-YC  187 (331)
T ss_dssp             HHHHHHHTTHHHHHHHHTTTCCCCCS-TTCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--CTT-TC
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccc-CcCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--HHh-cc
Confidence            47899999999999999999996411 134679999999999999999999999999999999999976433  122 23


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      .. .++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|+++|++|+|.||+||||++||+
T Consensus       188 ~~-~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~  266 (331)
T 1xdw_A          188 TQ-VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEAS  266 (331)
T ss_dssp             EE-CCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGG
T ss_pred             cc-CCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCC
Confidence            33 48999999999999999999999999999999999999999999999999999999999999999999999999994


Q ss_pred             --CCC-------C----CccCC-CCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccee
Q 027408          161 --PKD-------H----PWRYM-PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYI  212 (223)
Q Consensus       161 --~~~-------~----~l~~~-~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~  212 (223)
                        +.+       +    |||.+ |||++|||+|++|.++..++...+++|+.+|++|+++  .|.|
T Consensus       267 ~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~--~~~v  330 (331)
T 1xdw_A          267 VFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDC--PNKI  330 (331)
T ss_dssp             TTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCC--TTBC
T ss_pred             cccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHcCCCC--CCCC
Confidence              322       3    79999 9999999999999999999999999999999999864  4544

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.4e-46  Score=324.88  Aligned_cols=203  Identities=27%  Similarity=0.402  Sum_probs=186.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcC-CCCChhHHHhh
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR-VKMDPQLEKET   78 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~   78 (223)
                      ++||++.|++..+++.+++|.|.... ....+.++.|++|||||+|.||+.+|++++++|++|++||+ ++.. +.+...
T Consensus       110 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~  188 (320)
T 1gdh_A          110 LLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASY  188 (320)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhc
Confidence            47999999999999999999996321 12346799999999999999999999999999999999999 7643 445567


Q ss_pred             CCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC
Q 027408           79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (223)
Q Consensus        79 g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e  158 (223)
                      |+....++++++++||+|++|+|.+++|.++++++.++.||+|+++||++||+++|+++|.++|++|++.||++|||+.|
T Consensus       189 g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~e  268 (320)
T 1gdh_A          189 QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE  268 (320)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred             CcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            77766689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408          159 PAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       159 p~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~  206 (223)
                      | +.++|||.++|+++|||++++|.++..++...+ +|+.+|++|+++
T Consensus       269 P-~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~  314 (320)
T 1gdh_A          269 P-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGAD  314 (320)
T ss_dssp             T-SCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSC
T ss_pred             C-CCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCC
Confidence            9 788999999999999999999999999999999 999999999875

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=2e-46  Score=324.43  Aligned_cols=199  Identities=23%  Similarity=0.344  Sum_probs=184.6

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|..    ..+.++.|++|||||+|.||+.+|+.++++|++|++||+++.. ..+...|+
T Consensus       111 ~~~L~~~R~~~~~~~~~~~g~w~~----~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~  185 (313)
T 2ekl_A          111 GLMIAAARKMYTSMALAKSGIFKK----IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR-EKAEKINA  185 (313)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCC----CCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTC
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCC----CCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcch-hHHHhcCc
Confidence            479999999999999999999962    2467899999999999999999999999999999999997643 34556677


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ... ++++++++||+|++|+|++++|.++++++.++.||+|+++||++||+++|+++|.++|++|++.||++|||+.||+
T Consensus       186 ~~~-~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~  264 (313)
T 2ekl_A          186 KAV-SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPP  264 (313)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSC
T ss_pred             eec-CHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCC
Confidence            654 8999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC---CccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 027408          161 PKDH---PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       161 ~~~~---~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~  206 (223)
                      + ++   |||.+||+++|||++++|.++.+++...+++|+.+|++|+|+
T Consensus       265 ~-~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          265 K-EEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGM  312 (313)
T ss_dssp             C-SHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             C-CcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            8 56   999999999999999999999999999999999999999874

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=8.6e-46  Score=320.23  Aligned_cols=202  Identities=32%  Similarity=0.542  Sum_probs=183.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (223)
                      ++||++.|++..+++.+++|.|.... ....+.++.|++|||||+|.||+.+|++++++|++|++|||+.....      
T Consensus       108 ~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------  181 (311)
T 2cuk_A          108 ALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------  181 (311)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------
T ss_pred             HHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------
Confidence            47999999999999999999996321 11236799999999999999999999999999999999999764332      


Q ss_pred             CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      +. ..++++++++||+|++|+|++++|.++++++.++.||+++++||++||+++|+++|.++|+ |++.||++|||+.||
T Consensus       182 ~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP  259 (311)
T 2cuk_A          182 YP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEP  259 (311)
T ss_dssp             SC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSS
T ss_pred             cc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCC
Confidence            22 4589999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             CCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccee
Q 027408          160 APKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYI  212 (223)
Q Consensus       160 ~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~  212 (223)
                      ++.++|||.++|+++|||++++|.++..++...+++|+.+|++|+++  .|.|
T Consensus       260 ~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~--~~~v  310 (311)
T 2cuk_A          260 LPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREP--PNPV  310 (311)
T ss_dssp             CCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC--SSBC
T ss_pred             CCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC--CCcc
Confidence            99999999999999999999999999999999999999999999864  4544

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=2.5e-45  Score=319.83  Aligned_cols=203  Identities=25%  Similarity=0.412  Sum_probs=185.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++..+++.+++|.|.... ...+.+|.|++|||||+|.||+.+|+.++++|++|++||+++....     ++
T Consensus       130 ~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~  203 (333)
T 3ba1_A          130 GLILAVLRRICECDKYVRRGAWKFGD-FKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NY  203 (333)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTGGGGCC-CCCCCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CS
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCccc-cccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----Cc
Confidence            47999999999999999999997432 1236799999999999999999999999999999999999764321     55


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|.+++|+++++++.++.||++++|||++||.++|+++|.++|++|++.+|++|||++||.
T Consensus       204 ~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~  283 (333)
T 3ba1_A          204 TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPE  283 (333)
T ss_dssp             EEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTC
T ss_pred             eecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCC
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccee
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYI  212 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~  212 (223)
                      +. +|||.++||++|||++++|.++..++...+++|+.+|++|+++  .|.|
T Consensus       284 ~~-~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~--~~~V  332 (333)
T 3ba1_A          284 VP-EKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL--LTPV  332 (333)
T ss_dssp             CC-GGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCC--SSBC
T ss_pred             Cc-chhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC--CCCC
Confidence            76 8999999999999999999999999999999999999999875  4444

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=4.8e-45  Score=320.03  Aligned_cols=212  Identities=25%  Similarity=0.336  Sum_probs=190.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCC---CccCc--ccCcccCCCCCEEEEEcccHHHHHHHHHHc-cCCCeEEEEcCCCCChhH
Q 027408            1 MRILILVRNFLPGHHQVISGE---WNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL   74 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~---w~~~~--~~~~~~~l~g~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~   74 (223)
                      ++||+++|++..+++.+++|.   |....  ....+.+|.|++|||||+|.||+.+|+.++ ++|++|++||+++...+.
T Consensus       123 ~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~  202 (348)
T 2w2k_A          123 YLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAET  202 (348)
T ss_dssp             HHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHH
T ss_pred             HHHHHHHhChHHHHHHHHcCCCcccccccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhh
Confidence            479999999999999999999   94211  012357899999999999999999999999 999999999998765555


Q ss_pred             HHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeC
Q 027408           75 EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (223)
Q Consensus        75 ~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv  154 (223)
                      +.+.++....++++++++||+|++|+|.+++|+++++++.++.||++++|||++||+++|+++|.++|++|++.||++||
T Consensus       203 ~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv  282 (348)
T 2w2k_A          203 EKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDV  282 (348)
T ss_dssp             HHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESS
T ss_pred             HhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEecc
Confidence            55667776668999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccC
Q 027408          155 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA  215 (223)
Q Consensus       155 ~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~  215 (223)
                      |++|| ..++||+.++||++|||+++.|.++..++...+++||.+|++|+++  .|.|+++
T Consensus       283 ~~~EP-~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~v~~~  340 (348)
T 2w2k_A          283 HEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKP--LLTPAGK  340 (348)
T ss_dssp             CTTTT-SCCHHHHTSSSEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCC--CSSBCSC
T ss_pred             CCCCC-CCCchhhcCCCEEEcCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC--cceeccc
Confidence            99998 6677899999999999999999999999999999999999999863  5556544

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=3.2e-44  Score=312.81  Aligned_cols=210  Identities=28%  Similarity=0.432  Sum_probs=190.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccC-cccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~-~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (223)
                      ++||++.|++..+++.+++|.|... .....+.++.|++|||||+|.||+.+|+.++++|++|++||++....+.....+
T Consensus       119 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g  198 (330)
T 2gcg_A          119 SLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQ  198 (330)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTT
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcC
Confidence            4799999999999999999999642 112346799999999999999999999999999999999999765555555567


Q ss_pred             CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      +... ++++++++||+|++|+|.+++|+++++++.++.||+++++||++||+++|+++|.++|++|++.|+++|||++||
T Consensus       199 ~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ep  277 (330)
T 2gcg_A          199 AEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP  277 (330)
T ss_dssp             CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS
T ss_pred             ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCC
Confidence            7665 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceec
Q 027408          160 APKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIV  213 (223)
Q Consensus       160 ~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~  213 (223)
                      ++.++||+.++||++|||+|+.|.++..++...+++|+.+|++|+++  .|.|+
T Consensus       278 l~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~--~~~v~  329 (330)
T 2gcg_A          278 LPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM--PSELK  329 (330)
T ss_dssp             CCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCCC--TTEEC
T ss_pred             CCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC--CCCCC
Confidence            99999999999999999999999999999999999999999999874  55554

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.7e-44  Score=314.81  Aligned_cols=208  Identities=32%  Similarity=0.545  Sum_probs=186.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcc----cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRA----YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~----~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (223)
                      ++||++.|++..+++.+++|.|........+    .+|.|++|||||+|.||+.+|+.++++|++|++||+++.. +.+.
T Consensus       107 ~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~  185 (333)
T 2d0i_A          107 GLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK  185 (333)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH
T ss_pred             HHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh
Confidence            4799999999999999999999631101124    6899999999999999999999999999999999998743 4445


Q ss_pred             hhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        77 ~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      ..|+... ++++++++||+|++|+|.+++|+++++++.++.||++ ++||++||.++|+++|.++|+++++.||++|||+
T Consensus       186 ~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          186 ELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             HHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             hcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            5676654 8999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccCCC-CeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceecc
Q 027408          157 PQPAPKDHPWRYMP-NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK  214 (223)
Q Consensus       157 ~ep~~~~~~l~~~~-nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~  214 (223)
                      +||.+ ++||+.++ |+++|||+++.|.++..++...+++|+.+|++|+++  .|.|++
T Consensus       264 ~EP~~-~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~--~~~v~~  319 (333)
T 2d0i_A          264 KEPVR-EHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVP--EDLVNK  319 (333)
T ss_dssp             SSSCS-CCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCC--TTBSCT
T ss_pred             CCCCC-CchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCC--cCccCH
Confidence            99988 89999999 999999999999999999999999999999999864  455554

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=4.8e-44  Score=312.16  Aligned_cols=209  Identities=33%  Similarity=0.543  Sum_probs=188.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCc----cC-cccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH
Q 027408            1 MRILILVRNFLPGHHQVISGEWN----VA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~----~~-~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~   75 (223)
                      ++||++.|++..+++.+++|.|.    .. .....+.+|.|++|||||+|.||+.+|+.++++|++|++||++... +..
T Consensus       110 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~  188 (334)
T 2dbq_A          110 ALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVE  188 (334)
T ss_dssp             HHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhH
Confidence            47999999999999999999996    11 1122367899999999999999999999999999999999998744 444


Q ss_pred             HhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        76 ~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ...|+.. .++++++++||+|++|+|.+++|+++++++.++.||+++++||++||.++|+++|.++|++|++.||++|||
T Consensus       189 ~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~  267 (334)
T 2dbq_A          189 RELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVF  267 (334)
T ss_dssp             HHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCC
T ss_pred             hhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCC
Confidence            5567765 489999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceecc
Q 027408          156 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK  214 (223)
Q Consensus       156 ~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~  214 (223)
                      ++|| +.++||+.++||++|||+++.|.++..++...+++|+.+|++|+++  .|.|+.
T Consensus       268 ~~EP-~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~--~~~v~~  323 (334)
T 2dbq_A          268 EEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIP--PTLVNR  323 (334)
T ss_dssp             SSSS-CCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCC--TTBSCT
T ss_pred             CCCC-CCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCC--ccccCH
Confidence            9999 7788999999999999999999999999999999999999999875  455553

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=1.8e-41  Score=311.90  Aligned_cols=208  Identities=31%  Similarity=0.513  Sum_probs=190.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||+++|++..+++.+++|.|.+..  +.+.+|.|++|||||+|.||+++|+.++++|++|++||++. ..+.+...|+
T Consensus       109 ~~~l~~~R~~~~~~~~~~~g~w~~~~--~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~  185 (529)
T 1ygy_A          109 ALLLAASRQIPAADASLREHTWKRSS--FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV-SPARAAQLGI  185 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCGGG--CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS-CHHHHHHHTC
T ss_pred             HHHHHHHhhhHHHHHHHHhCCCcccC--cCccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCc
Confidence            47999999999999999999997543  34679999999999999999999999999999999999976 3455666788


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ... ++++++++||+|++|+|.+++|.++++++.++.||+|+++||++||.++|+++|.++|++|++.||++|||+.||.
T Consensus       186 ~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~  264 (529)
T 1ygy_A          186 ELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC  264 (529)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC
T ss_pred             EEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCC
Confidence            765 8999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             CCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcceeccC
Q 027408          161 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA  215 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~~~n~~~~~  215 (223)
                       .++|||.++|+++|||++++|.++.+++...+++++.+|+.|++.  .|.++..
T Consensus       265 -~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~--~~~v~~~  316 (529)
T 1ygy_A          265 -TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFV--PDAVNVG  316 (529)
T ss_dssp             -SCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCC--TTBCSCC
T ss_pred             -CCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCC--CcccCCc
Confidence             588999999999999999999999999999999999999999864  4555544

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=2.3e-42  Score=304.53  Aligned_cols=168  Identities=24%  Similarity=0.426  Sum_probs=152.1

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh----h
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----T  106 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~----t  106 (223)
                      +.+|.|++|||||+|.||+.+|++++++|++|++||++.   +. ...+. ...++++++++||+|++|+|++++    |
T Consensus       114 g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~---~~-~~~~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T  188 (381)
T 3oet_A          114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR---AA-RGDEG-DFRTLDELVQEADVLTFHTPLYKDGPYKT  188 (381)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHH---HH-TTCCS-CBCCHHHHHHHCSEEEECCCCCCSSTTCC
T ss_pred             CCccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCh---HH-hccCc-ccCCHHHHHhhCCEEEEcCcCCccccccc
Confidence            357999999999999999999999999999999999842   11 11222 356899999999999999999999    9


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~  186 (223)
                      +++++++.++.||+|+++||+|||+++|+++|+++|++|++.||+||||++||++. ++||.++ +++|||+||+|.|+.
T Consensus       189 ~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~-~~L~~~~-~i~TPHiag~t~e~~  266 (381)
T 3oet_A          189 LHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLN-VALLEAV-DIGTSHIAGYTLEGK  266 (381)
T ss_dssp             TTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCC-HHHHHHS-SEECSSCTTCCHHHH
T ss_pred             hhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCc-chhhhCC-EEECCccCcCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999875 4688764 899999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCC
Q 027408          187 LRYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       187 ~~~~~~~~~~i~~~~~g~~  205 (223)
                      .++...+++|+.+|+++.+
T Consensus       267 ~~~~~~~~~~l~~~l~~~~  285 (381)
T 3oet_A          267 ARGTTQVFEAYSAFIGREQ  285 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHcCCc
Confidence            9999999999999998853

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=9.4e-41  Score=294.77  Aligned_cols=167  Identities=27%  Similarity=0.464  Sum_probs=152.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh----hh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TR  107 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~----t~  107 (223)
                      .+|.|++|||||+|+||+.+|++++++|++|++||++..   . ...+.. ..++++++++||+|++|+|++++    |.
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---~-~~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~  186 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQ---A-REPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTR  186 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHH---H-HSTTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCT
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChh---h-hccCcc-cCCHHHHHHhCCEEEEeccCccccccchh
Confidence            479999999999999999999999999999999998531   1 123433 46899999999999999999999    99


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHH
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQL  187 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~  187 (223)
                      ++++++.++.||+|+++||+|||+++|+++|+++|++|+|.+|+||||++||.+. ++|+. +|+++|||+||+|.++..
T Consensus       187 ~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~-~~l~~-~nvi~TPHiag~t~e~~~  264 (380)
T 2o4c_A          187 HLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQAD-PELAA-RCLIATPHIAGYSLEGKL  264 (380)
T ss_dssp             TSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCC-HHHHT-TCSEECSSCTTCCHHHHH
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCc-hhhcc-CCEEEccccCcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999654 56776 599999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCC
Q 027408          188 RYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       188 ~~~~~~~~~i~~~~~g~~  205 (223)
                      ++...+.+|+.+|++|++
T Consensus       265 ~~~~~~~~nl~~~l~g~~  282 (380)
T 2o4c_A          265 RGTAQIYQAYCAWRGIAE  282 (380)
T ss_dssp             HHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999999985

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.97  E-value=1.3e-31  Score=242.10  Aligned_cols=186  Identities=15%  Similarity=0.164  Sum_probs=159.8

Q ss_pred             HHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCC
Q 027408            6 LVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED   85 (223)
Q Consensus         6 ~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~   85 (223)
                      +.|++....+.+++| |.+.    .+.++.|++|||||+|.||+.+|++++++|++|++||+++.....+...|+.. .+
T Consensus       232 l~r~~~~~~~~l~~g-w~r~----~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~  305 (479)
T 1v8b_A          232 KYDNVYGCRHSLPDG-LMRA----TDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VT  305 (479)
T ss_dssp             TTHHHHHHHHHHHHH-HHHH----HCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CC
T ss_pred             HHhchHhHHHHHhhh-hhhc----cccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cC
Confidence            457777777888888 8642    35689999999999999999999999999999999999763322344556654 58


Q ss_pred             HHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHH--HHHhCCccEEEeeCCCCCCCCC
Q 027408           86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVD--ACSSGHIAGYSGDVWNPQPAPK  162 (223)
Q Consensus        86 l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~--~L~~g~i~~a~lDv~~~ep~~~  162 (223)
                      +++++++||+|++|+    .|.++++++.++.||+|++|||++||.+ ||+++|.+  +|++|+|. +++|||   |++.
T Consensus       306 l~ell~~aDiVi~~~----~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~  377 (479)
T 1v8b_A          306 LDEIVDKGDFFITCT----GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPN  377 (479)
T ss_dssp             HHHHTTTCSEEEECC----SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTT
T ss_pred             HHHHHhcCCEEEECC----ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCC
Confidence            999999999999995    5788999999999999999999999999 99999999  99999999 899998   4455


Q ss_pred             CCCccCC--CCeEEccCCC-CCcHH-HHHHHHHHHHHHHHHHHcCC--CC
Q 027408          163 DHPWRYM--PNQAMTPHVS-GTTID-AQLRYAAGVKDMLDRYFKGE--DF  206 (223)
Q Consensus       163 ~~~l~~~--~nv~~tPH~a-~~t~~-~~~~~~~~~~~~i~~~~~g~--~~  206 (223)
                      ++|+|.+  +|+++| |+| +.+.+ ...+++..+++|+..|++|+  ++
T Consensus       378 ~~~l~~l~~~nvv~t-H~atghp~e~~~~s~a~~~~~ni~~~~~g~~~~l  426 (479)
T 1v8b_A          378 GNKIIVLARGRLLNL-GCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKY  426 (479)
T ss_dssp             SCEEEEEGGGSBHHH-HSSCCSCHHHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred             CCeeeEecCCCEEEE-eccCCCCchhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            7899988  999999 999 66766 67788889999999999998  65

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.97  E-value=7e-32  Score=244.64  Aligned_cols=185  Identities=14%  Similarity=0.165  Sum_probs=154.7

Q ss_pred             HHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCC
Q 027408            6 LVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED   85 (223)
Q Consensus         6 ~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~   85 (223)
                      +.|++....+.+++| |.+    ..+.++.|++|||||+|.||+.+|++++++|++|++||+++.....+...|+.. .+
T Consensus       252 l~r~~~~~~~~l~~g-w~~----~~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~  325 (494)
T 3d64_A          252 KFDNLYGCRESLVDG-IKR----ATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VT  325 (494)
T ss_dssp             HHHHHHHHHTTHHHH-HHH----HHCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CC
T ss_pred             HHhhhHhhhhhhhhh-hhh----ccccccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CC
Confidence            446666666666666 753    235689999999999999999999999999999999999763222333456654 48


Q ss_pred             HHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCccEEEeeCCCCCCCCCCC
Q 027408           86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH  164 (223)
Q Consensus        86 l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~  164 (223)
                      +++++++||+|++|+    .|.++++++.++.||+|++|||++||++ ||+++| ++|++|+|. +++|+|   |++.++
T Consensus       326 l~ell~~aDiVi~~~----~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~---plp~~~  396 (494)
T 3d64_A          326 MEYAADKADIFVTAT----GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHI---IFPDGK  396 (494)
T ss_dssp             HHHHTTTCSEEEECS----SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEE---ECTTSC
T ss_pred             HHHHHhcCCEEEECC----CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEE---ECCCCC
Confidence            999999999999998    4788999999999999999999999999 699999 999999998 556654   777789


Q ss_pred             CccCC--CCeEEccCCC-CCcHH-HHHHHHHHHHHHHHHHHcCCCC
Q 027408          165 PWRYM--PNQAMTPHVS-GTTID-AQLRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       165 ~l~~~--~nv~~tPH~a-~~t~~-~~~~~~~~~~~~i~~~~~g~~~  206 (223)
                      |||.+  +|+++| |+| +.+.+ ...+++..+++|+..|++|+++
T Consensus       397 pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~~~~~ni~~~~~g~~~  441 (494)
T 3d64_A          397 RVILLAEGRLVNL-GCATGHPSFVMSNSFTNQTLAQIELFTRGGEY  441 (494)
T ss_dssp             EEEEEGGGSBHHH-HTSCCSCHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred             chhhcCCCCEEEE-eCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99988  999999 999 66754 7788888999999999999875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.85  E-value=4.5e-22  Score=180.77  Aligned_cols=164  Identities=16%  Similarity=0.165  Sum_probs=137.2

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++...+.+...|+.. .+++++++++|+|+.|++    +.++++
T Consensus       270 ~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atg----t~~~i~  344 (494)
T 3ce6_A          270 ALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATG----NKDIIM  344 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSS----SSCSBC
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCC----CHHHHH
Confidence            468999999999999999999999999999999999765445566778764 489999999999999986    456788


Q ss_pred             HHHHhcCCCCcEEEEcCCCCc-cCHHHHHH-HHHhCCccEEEeeCCCCCCCCCCCC--ccCCCCeE----EccCCCCCcH
Q 027408          112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD-ACSSGHIAGYSGDVWNPQPAPKDHP--WRYMPNQA----MTPHVSGTTI  183 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~-vd~~al~~-~L~~g~i~~a~lDv~~~ep~~~~~~--l~~~~nv~----~tPH~a~~t~  183 (223)
                      .+.++.||++++++|++|+.. +|..+|.+ +|+++++. +.+|+++.++.  .++  ++..++++    +|||+++.+.
T Consensus       345 ~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~--~~~l~LL~~grlvnL~~~TPH~a~~~~  421 (494)
T 3ce6_A          345 LEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT--GRSIIVLSEGRLLNLGNATGHPSFVMS  421 (494)
T ss_dssp             HHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT--CCEEEEEGGGSCHHHHHSCCSCHHHHH
T ss_pred             HHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc--chHHHHHhCCCEEeccCCCCCccccch
Confidence            899999999999999999999 99999988 78888887 66798765321  344  55667887    9999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCC
Q 027408          184 DAQLRYAAGVKDMLDRYFKGEDF  206 (223)
Q Consensus       184 ~~~~~~~~~~~~~i~~~~~g~~~  206 (223)
                      ++.   ...+.+++..|.+|++.
T Consensus       422 ~s~---~~qa~~ai~~~~~g~~~  441 (494)
T 3ce6_A          422 NSF---ANQTIAQIELWTKNDEY  441 (494)
T ss_dssp             HHH---HHHHHHHHHHHHTGGGC
T ss_pred             HHH---HHHHHHHHHHHHcCCCC
Confidence            753   55788999999998765

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.82  E-value=4.2e-22  Score=177.87  Aligned_cols=155  Identities=14%  Similarity=0.183  Sum_probs=121.9

Q ss_pred             ccC-CCCCEEEEEcccHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCE-EEEcCCCChhhh
Q 027408           31 AYD-LEGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI-VVVNTPLTEKTR  107 (223)
Q Consensus        31 ~~~-l~g~~igIiG~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDv-Vv~~~p~~~~t~  107 (223)
                      +.+ |.|+||+|+|+|+||+.+|+++++ ||++|++++++...     .++...+ +++++++.+|. .++ +|+ ++|+
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~-----~~~~~gv-dl~~L~~~~d~~~~l-~~l-~~t~  277 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG-----IYNPDGL-NADEVLKWKNEHGSV-KDF-PGAT  277 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE-----EEEEEEE-CHHHHHHHHHHHSSS-TTC-TTSE
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc-----ccCccCC-CHHHHHHHHHhcCEe-ecC-ccCe
Confidence            457 999999999999999999999999 99999999643311     1111222 56777664443 222 455 5677


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCC-CCccCCCCeEEccCC----C---
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD-HPWRYMPNQAMTPHV----S---  179 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~-~~l~~~~nv~~tPH~----a---  179 (223)
                      + ++.+.+..||+ .++||++||.+||+++ +++|+.+.|.+++     +||.+++ ++|+..+||++|||+    |   
T Consensus       278 ~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt  349 (419)
T 1gtm_A          278 N-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVT  349 (419)
T ss_dssp             E-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHH
T ss_pred             e-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcce
Confidence            7 78889999998 5999999999999999 6999999999877     8887643 689999999999999    5   


Q ss_pred             --------------CCcHHHHHHHHHHHHHHHHHHH
Q 027408          180 --------------GTTIDAQLRYAAGVKDMLDRYF  201 (223)
Q Consensus       180 --------------~~t~~~~~~~~~~~~~~i~~~~  201 (223)
                                    +.+.|...++...+.+++.+++
T Consensus       350 ~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~  385 (419)
T 1gtm_A          350 VSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVY  385 (419)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence                          5567778888887778877776

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.79  E-value=2.7e-19  Score=158.05  Aligned_cols=130  Identities=17%  Similarity=0.232  Sum_probs=106.6

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-hCCe------ecCCHHhhcccCCEEEEcC--CC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK------FEEDLDTMLPKCDIVVVNT--PL  102 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~------~~~~l~e~l~~aDvVv~~~--p~  102 (223)
                      .++.|++|+|+|+|.||+.+|+.++++|++|+++|+++...+..++ ++..      ...+++++++++|+|+.++  |.
T Consensus       164 ~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          164 PGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence            3689999999999999999999999999999999997643333333 4442      1235778888999999977  44


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcC--CCCccCHHHHHHHHHhCCccEEEeeCCCC-CCCCCCCCccCCCCeE--EccC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIAGYSGDVWNP-QPAPKDHPWRYMPNQA--MTPH  177 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~s--rg~~vd~~al~~~L~~g~i~~a~lDv~~~-ep~~~~~~l~~~~nv~--~tPH  177 (223)
                      + .+..+++++.++.||++++|||++  +|+                      ||+. ||.+.++|++..+|++  +|||
T Consensus       244 ~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~~~ph  300 (377)
T 2vhw_A          244 A-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFYCVAN  300 (377)
T ss_dssp             S-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEECBTT
T ss_pred             C-CCcceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEEecCC
Confidence            4 677888999999999999999998  332                      6777 8888888999999988  9999


Q ss_pred             CCCCcHH
Q 027408          178 VSGTTID  184 (223)
Q Consensus       178 ~a~~t~~  184 (223)
                      +++.+..
T Consensus       301 l~~~~~~  307 (377)
T 2vhw_A          301 MPASVPK  307 (377)
T ss_dssp             GGGGSHH
T ss_pred             cchhhHH
Confidence            9998866

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.74  E-value=2.8e-18  Score=152.90  Aligned_cols=105  Identities=21%  Similarity=0.213  Sum_probs=91.0

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      +.+|.||+++|+|+|.||+.+|+++++||++|+++++++.....+...|+... ++++++++||+|+.+++    |.++|
T Consensus       242 g~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atg----t~~lI  316 (464)
T 3n58_A          242 DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTG----NKDVI  316 (464)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCS----SSSSB
T ss_pred             CCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCC----Ccccc
Confidence            45899999999999999999999999999999999986533333445576654 89999999999998754    67899


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 027408          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~-vd~~al~~  140 (223)
                      +++.|+.||+|++|||++||.+ +|.++|.+
T Consensus       317 ~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          317 TIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             CHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             CHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            9999999999999999999998 99988864

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.72  E-value=1.2e-17  Score=148.87  Aligned_cols=106  Identities=14%  Similarity=0.241  Sum_probs=92.2

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      +.++.|++|+|+|+|.||+.+|+.++++|++|+++|+++.....+...|+.. .++++++++||+|+++.    .|.+++
T Consensus       206 g~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~----gt~~iI  280 (436)
T 3h9u_A          206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTT----GNDDII  280 (436)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECS----SCSCSB
T ss_pred             CCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECC----CCcCcc
Confidence            4679999999999999999999999999999999999764334445567665 48999999999999743    478899


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHH
Q 027408          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVDA  141 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~  141 (223)
                      +++.++.||+|++|||++||.+ ||.++|.+.
T Consensus       281 ~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          281 TSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             CTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             CHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            9999999999999999999998 999999764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.67  E-value=1.2e-16  Score=142.13  Aligned_cols=104  Identities=17%  Similarity=0.300  Sum_probs=88.8

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      +..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++.....+...|+.. .+++++++++|+|++|    +.|.+++
T Consensus       215 ~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~a----tgt~~lI  289 (435)
T 3gvp_A          215 DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITC----TGNKNVV  289 (435)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEEC----SSCSCSB
T ss_pred             CceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEEC----CCCcccC
Confidence            4579999999999999999999999999999999998763333444556654 4899999999999995    3577899


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCc-cCHHHHH
Q 027408          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVV  139 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~-vd~~al~  139 (223)
                      +++.|+.||+|+++||++||.+ +|.++|.
T Consensus       290 ~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          290 TREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             CHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             CHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            9999999999999999999998 7776663

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.65  E-value=3.4e-16  Score=133.61  Aligned_cols=97  Identities=15%  Similarity=0.235  Sum_probs=82.8

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      +.++.|++|||||+|.||+.+|+.++++|++|++|||+....+...+.|+..  ..+++++++++|+|++|+|.     +
T Consensus       150 ~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~  224 (293)
T 3d4o_A          150 DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----L  224 (293)
T ss_dssp             SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----C
T ss_pred             CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----H
Confidence            4579999999999999999999999999999999999763333344556653  25788999999999999994     6


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCc
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      +++++.++.||+++++||++||+.
T Consensus       225 ~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          225 VVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             CBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             HhCHHHHHhcCCCCEEEEecCCCC
Confidence            888999999999999999999764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.65  E-value=5.6e-17  Score=142.76  Aligned_cols=155  Identities=17%  Similarity=0.212  Sum_probs=104.9

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-hCCe------ecCCHHhhcccCCEEEEcCCCCh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK------FEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~------~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      .++.+++|+|+|.|.||+.+++.++.+|++|+++|+++...+...+ .+..      ...+++++++++|+|+.|++...
T Consensus       162 ~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          162 PGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             TBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            3689999999999999999999999999999999997533333332 4432      12356678889999999998655


Q ss_pred             -hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeE---------E
Q 027408          105 -KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA---------M  174 (223)
Q Consensus       105 -~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~---------~  174 (223)
                       .+..++.++.++.||++..|||++..             .|   ++ +|++  ||.+.++|++..+++.         .
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~  302 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGA  302 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGG
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchh
Confidence             56678889999999999999999832             12   33 8988  6666677888889998         8


Q ss_pred             ccCCCCC--cHHHHHHHHHHHHHHHHHHHcCCC
Q 027408          175 TPHVSGT--TIDAQLRYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       175 tPH~a~~--t~~~~~~~~~~~~~~i~~~~~g~~  205 (223)
                      |||.++.  +.+....+...+.+++..+..+++
T Consensus       303 ~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~  335 (369)
T 2eez_A          303 VPRTSTFALTNQTLPYVLKLAEKGLDALLEDAA  335 (369)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcChhhhhcChH
Confidence            8998874  456677777777777777776654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.64  E-value=4.9e-16  Score=133.00  Aligned_cols=98  Identities=19%  Similarity=0.306  Sum_probs=83.0

Q ss_pred             cccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhh
Q 027408           30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .+.++.|++|+|||+|.||+.+|+.++++|++|++|||+....+...+.|+..  ..+++++++++|+|++|+|.     
T Consensus       151 ~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----  225 (300)
T 2rir_A          151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----  225 (300)
T ss_dssp             CSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----
T ss_pred             cCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----
Confidence            35689999999999999999999999999999999999763333333456542  35789999999999999994     


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCc
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      ++++++.++.||+++++||++||+.
T Consensus       226 ~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          226 MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            6788999999999999999999864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.61  E-value=1.3e-14  Score=124.99  Aligned_cols=166  Identities=12%  Similarity=0.024  Sum_probs=108.9

Q ss_pred             HHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCC--eecCCHHh-hcc
Q 027408           17 VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDT-MLP   91 (223)
Q Consensus        17 ~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~e-~l~   91 (223)
                      +-.+.|....+. ...++..++|||||+|.||.++|+.|+..|+  +|++||+++...+.+.+.|+  ....++++ +++
T Consensus        15 ~~~~~~~~~~~~-~~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~   93 (314)
T 3ggo_A           15 VPRGSHMKNIIK-ILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF   93 (314)
T ss_dssp             ---------------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGG
T ss_pred             cccccCcCcCCc-hhhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhc
Confidence            344566544322 1234556899999999999999999999999  99999998654555566676  34568888 899


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC---CCCCCCCccC
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ---PAPKDHPWRY  168 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e---p~~~~~~l~~  168 (223)
                      +||+|++|+|... +..++ ++....++++++|++++..+....+++.+.+.. ++.+ +--++..|   |......|+.
T Consensus        94 ~aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~-~hPm~G~e~sG~~~A~~~Lf~  169 (314)
T 3ggo_A           94 SPDFVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVG-GHPIAGTEKSGVEYSLDNLYE  169 (314)
T ss_dssp             CCSEEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEEC-EEECCCCCCCSGGGCCTTTTT
T ss_pred             cCCEEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEe-cCcccCCcccchhhhhhhhhc
Confidence            9999999999543 23333 677788999999999987765556666666654 2221 23444433   3334456777


Q ss_pred             CCCeEEccCCCCCcHHHHHH
Q 027408          169 MPNQAMTPHVSGTTIDAQLR  188 (223)
Q Consensus       169 ~~nv~~tPH~a~~t~~~~~~  188 (223)
                      ...+++||+- +.+.+..++
T Consensus       170 g~~~il~~~~-~~~~~~~~~  188 (314)
T 3ggo_A          170 GKKVILTPTK-KTDKKRLKL  188 (314)
T ss_dssp             TCEEEECCCT-TSCHHHHHH
T ss_pred             CCEEEEEeCC-CCCHHHHHH
Confidence            7889999973 345555443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.59  E-value=1.4e-15  Score=130.15  Aligned_cols=121  Identities=12%  Similarity=0.124  Sum_probs=101.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (223)
                      +||||||+|.||..+|+.|...|++|++|||++...+...+.|....+++.|+++.+|+|++|+|..+....++....+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            58999999999999999999999999999998866666667788888999999999999999999887777778788999


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (223)
Q Consensus       117 ~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~  157 (223)
                      .++++.++||++....-+...+.+.+.+..+.+...-|...
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg  126 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFAR  126 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECC
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCC
Confidence            99999999999999999999999999999888554445443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.58  E-value=1.8e-15  Score=129.72  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=102.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH--HH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~--~~  114 (223)
                      ++||+||+|.||..+|+.|.+.|++|.+|||++...+.....|.....++.|+++.||+|++|+|..+..+.++..  ..
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            5899999999999999999999999999999875556666778888899999999999999999988877766532  36


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      ++.+++|.++||+|....-+...+.+.+++..+.+...-|..
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsG  125 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSG  125 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEES
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCC
Confidence            788999999999999999999999999999988844333443

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.58  E-value=6.9e-15  Score=126.53  Aligned_cols=144  Identities=13%  Similarity=0.119  Sum_probs=98.3

Q ss_pred             HHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC--CChhHHHhhCCeecCCHHhhc
Q 027408           14 HHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK--MDPQLEKETGAKFEEDLDTML   90 (223)
Q Consensus        14 ~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~--~~~~~~~~~g~~~~~~l~e~l   90 (223)
                      ++..+.+.|..+...........++|||||+|.||..+|+.|...|+ +|.+||+++  ...+...+.|+....++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~   81 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA   81 (312)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred             CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence            34566677764332122234456899999999999999999999999 999999963  334455567888888999999


Q ss_pred             ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC--CccEEEeeCCCCCC
Q 027408           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDVWNPQP  159 (223)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g--~i~~a~lDv~~~ep  159 (223)
                      ++||+|++|+|.......+  .+..+.++++++|||++........++.+.+.+.  .+.+....|+.++|
T Consensus        82 ~~aDvVi~~vp~~~~~~~~--~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~  150 (312)
T 3qsg_A           82 GECDVIFSLVTAQAALEVA--QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVK  150 (312)
T ss_dssp             HHCSEEEECSCTTTHHHHH--HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCST
T ss_pred             hcCCEEEEecCchhHHHHH--HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCch
Confidence            9999999999976655432  6778889999999999999999999999988876  45533334555433

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.57  E-value=3e-15  Score=128.46  Aligned_cols=125  Identities=14%  Similarity=0.085  Sum_probs=101.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ++..++|||||+|.||..+|+.|...|++|.+|||++...+...+.|+....+++++++++|+|++++|....++.++..
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~   85 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM   85 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc
Confidence            56778999999999999999999999999999999865444555568877889999999999999999976666666642


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~  157 (223)
                      +.+..++++.++||+++....+...+.+.+.+..+.+....|+..
T Consensus        86 ~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~  130 (306)
T 3l6d_A           86 PGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAY  130 (306)
T ss_dssp             TTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred             cchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccC
Confidence            234557899999999999999999999999887776443344443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.57  E-value=4.9e-15  Score=127.23  Aligned_cols=120  Identities=13%  Similarity=0.081  Sum_probs=99.4

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      ......++|||||+|.||..+|+.|...|++|.+|||++...+...+.|+....++++++++||+|++|+|....++.++
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~   95 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV   95 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence            34556789999999999999999999999999999998765566666788888899999999999999999655665554


Q ss_pred             --cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEE
Q 027408          111 --DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (223)
Q Consensus       111 --~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a  150 (223)
                        ..+.+..++++.++||++.........+.+.+.+..+...
T Consensus        96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v  137 (310)
T 3doj_A           96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFV  137 (310)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence              2455678899999999999998888999999988766643

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.57  E-value=5.3e-14  Score=118.67  Aligned_cols=145  Identities=10%  Similarity=0.038  Sum_probs=104.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCCe--ecCCHHhhcc-cCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK--FEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~--~~~~l~e~l~-~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ++|+|||+|.||..+|+.++..|+  +|++||+++...+...+.|+.  ...+++++++ ++|+|++|+|.. .+..++ 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~-   79 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA-   79 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHH-
Confidence            589999999999999999999998  899999976444445556663  3457888999 999999999943 333333 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC---CCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ---PAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e---p~~~~~~l~~~~nv~~tPH~a~~t~~~~  186 (223)
                      .+....++++++|++++++.....+.+.+.+.++-+.  ...++..+   |.....+++...+++++||.++. .+..
T Consensus        80 ~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~-~~~~  154 (281)
T 2g5c_A           80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KKRL  154 (281)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC-HHHH
T ss_pred             HHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCCCEEEecCCCCC-HHHH
Confidence            4566778999999999988876667788888764111  12334333   33344567777789999997654 4433

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.57  E-value=2.4e-15  Score=129.76  Aligned_cols=123  Identities=20%  Similarity=0.155  Sum_probs=100.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ....++|||||+|.||..+|+.|...|++|.+|||++...+...+.|+....+++++++++|+|++|+|....++.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            34677999999999999999999999999999999864444455557877789999999999999999966666555432


Q ss_pred             -HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408          113 -DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus       113 -~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                       +.++.++++.++||++++.+.+.+.+.+.+.+..+......|+
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  151 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVS  151 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCc
Confidence             5667899999999999999999999999998877764443333

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.56  E-value=9.4e-15  Score=124.69  Aligned_cols=119  Identities=13%  Similarity=0.164  Sum_probs=101.1

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      .++|||||+|.||..+|+.|...|++|.+||+++...+...+.|+...++++++++ +|+|++|+|..+.++.++ ++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            36899999999999999999999999999999886666666778888889999999 999999999766666666 6788


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      +.++++.++||+++....+.+.+.+.+.+..+.+....|+.
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g  133 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSG  133 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEES
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcC
Confidence            88999999999999999899999999988766644333443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.54  E-value=9.8e-15  Score=123.80  Aligned_cols=114  Identities=12%  Similarity=0.111  Sum_probs=97.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~  114 (223)
                      ++|||||+|.||..+|+.|...|++|.+|||++...+...+.++....+++++++++|+|++|+|....++.++.  ++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999987655666666888888999999999999999996656655552  456


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEE
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a  150 (223)
                      .+.+++++++||++.....+...+.+.+.+..+.+.
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~  117 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFL  117 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            678999999999999999888999999988766643

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.54  E-value=1.6e-14  Score=126.62  Aligned_cols=123  Identities=14%  Similarity=0.171  Sum_probs=103.3

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccC---CEEEEcCCCChhhhhcc
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC---DIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~a---DvVv~~~p~~~~t~~~i  110 (223)
                      +.+++|||||+|.||..+|+.|...|++|.+|||++...+.....|+....+++++++++   |+|++++|.. .+..++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            567899999999999999999999999999999986444555556777778999999988   9999999966 555555


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e  158 (223)
                       .+....++++.+|||++.+...+...+.+.+.+..+.+....|+..+
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~  145 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGI  145 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGG
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCH
Confidence             67788899999999999999999999999999988886666666543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.52  E-value=1.8e-14  Score=128.13  Aligned_cols=141  Identities=18%  Similarity=0.258  Sum_probs=106.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-hHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      ++.|++|+|+|+|.||+.+++.++.+|+ +|+++||+.... +.+..+|...  ..++.+++.++|+|+.|+|.+   ..
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~---~~  240 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP---HP  240 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS---SC
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCC---Cc
Confidence            4799999999999999999999999999 899999976332 4556667643  246778888999999998743   44


Q ss_pred             cccHHHHhc--CC----CCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEE--ccCCCC
Q 027408          109 MFDKDRIAK--MK----KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM--TPHVSG  180 (223)
Q Consensus       109 ~i~~~~~~~--mk----~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~--tPH~a~  180 (223)
                      +++.+.++.  ||    ++.+++|++                             +|.+.+++++.+|||++  +||+++
T Consensus       241 ~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d~d~l~~  291 (404)
T 1gpj_A          241 VIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRTIDDLRV  291 (404)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEEHHHHHH
T ss_pred             eecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEeHhhHHH
Confidence            566677766  32    445566654                             26555678999999999  999999


Q ss_pred             CcHHHHH----------HHHHHHHHHHHHHHcCCC
Q 027408          181 TTIDAQL----------RYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       181 ~t~~~~~----------~~~~~~~~~i~~~~~g~~  205 (223)
                      .+.++..          .+....++++..|+.+.+
T Consensus       292 ~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~  326 (404)
T 1gpj_A          292 IARENLERRRKEIPKVEKLIEEELSTVEEELEKLK  326 (404)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8887654          555566677778877654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.51  E-value=1.1e-14  Score=123.42  Aligned_cols=113  Identities=14%  Similarity=0.093  Sum_probs=95.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~  114 (223)
                      ++|||||+|.||..+|+.|...|++|.+|||++...+...+.|+...+++++++++||+|++|+|..+.++.++.  ++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            579999999999999999999999999999987655656666888888999999999999999996656655542  445


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccE
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~  149 (223)
                      .+.++++.++||++++...+...+.+.+.+..+..
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~  116 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRF  116 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence            67789999999999999988899999988876653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.50  E-value=4.6e-13  Score=113.48  Aligned_cols=140  Identities=12%  Similarity=0.080  Sum_probs=103.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-------------------------CCeecCCHHhhcc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------------------------GAKFEEDLDTMLP   91 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------------------------g~~~~~~l~e~l~   91 (223)
                      ++|+|||+|.||..+|+.+...|++|++||+++...+...+.                         .+...++++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            689999999999999999999999999999976332222211                         1345678999999


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCC
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  171 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~n  171 (223)
                      +||+|+.++|.+.+.+..+.++..+.+++++++++.+.+  +...++.+.+... .+..++..+.        |.+..+.
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~--------p~~~~~l  153 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN--------HVWVNNT  153 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS--------STTTSCE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC--------CcccCce
Confidence            999999999988777777778888889999999966554  3567787777543 3456666442        3345677


Q ss_pred             eEEccCCCCCcHHHHHH
Q 027408          172 QAMTPHVSGTTIDAQLR  188 (223)
Q Consensus       172 v~~tPH~a~~t~~~~~~  188 (223)
                      +.++||- ..+.+..++
T Consensus       154 vevv~~~-~t~~~~~~~  169 (283)
T 4e12_A          154 AEVMGTT-KTDPEVYQQ  169 (283)
T ss_dssp             EEEEECT-TSCHHHHHH
T ss_pred             EEEEeCC-CCCHHHHHH
Confidence            8889983 344555443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.50  E-value=1.5e-14  Score=123.70  Aligned_cols=115  Identities=16%  Similarity=0.052  Sum_probs=94.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-cCCHHhhcccCCEEEEcCCCChhhhhccc--
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTMLPKCDIVVVNTPLTEKTRGMFD--  111 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--  111 (223)
                      ..++|||||+|.||..+|+.|...|++|.+|||++...+...+.|... ..++++++++||+|++|+|.....+.++.  
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~   85 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE   85 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence            347899999999999999999999999999999864444555567665 67899999999999999996655555542  


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccE
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~  149 (223)
                      ++..+.+++++++||+++........+.+.+.+..+.+
T Consensus        86 ~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~  123 (303)
T 3g0o_A           86 DGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNM  123 (303)
T ss_dssp             CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeE
Confidence            34567789999999999999888889999998876653

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.49  E-value=7.3e-14  Score=120.45  Aligned_cols=136  Identities=14%  Similarity=0.010  Sum_probs=97.0

Q ss_pred             HHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCC-------ChhHHHhhCCeecC-
Q 027408           14 HHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKM-------DPQLEKETGAKFEE-   84 (223)
Q Consensus        14 ~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~-------~~~~~~~~g~~~~~-   84 (223)
                      +.+.+...|.+....   .. -.++|||||+|.||..+|+.|...| ++|++||+++.       ..+.....|+  .. 
T Consensus         6 ~~~~~~~~~~~~~~~---~~-M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~   79 (317)
T 4ezb_A            6 HHSSGVDLGTENLYF---QS-MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPL   79 (317)
T ss_dssp             ---------CCCHHH---HT-SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEE
T ss_pred             ccccccccCcccCcc---cc-cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCC
Confidence            444455567653210   11 2378999999999999999999999 99999999752       1122233465  55 


Q ss_pred             CHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408           85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (223)
Q Consensus        85 ~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~  157 (223)
                      ++++++++||+|++|+|.......+  .+....+++++++||++.....+...+.+.+.+..+.+....|+.+
T Consensus        80 s~~e~~~~aDvVi~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~  150 (317)
T 4ezb_A           80 DDVAGIACADVVLSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR  150 (317)
T ss_dssp             SSGGGGGGCSEEEECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC
T ss_pred             CHHHHHhcCCEEEEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC
Confidence            7889999999999999966655443  6778889999999999999999999999999887666444445554

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.48  E-value=1.5e-13  Score=116.31  Aligned_cols=144  Identities=14%  Similarity=0.133  Sum_probs=100.3

Q ss_pred             CCEEEEEcccHHHHHHHHHHccC--CCeEEEEcCCCCChhHHHhhCC--eecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~g~--~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      -++|+|||+|.||..+|+.+...  |.+|++||+++...+...+.|.  ....+++++++++|+|++|+|.... ..++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~-~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKT-IDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHH-HHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHH-HHHH-
Confidence            46899999999999999999865  6899999997543344444565  3456788889999999999994332 3333 


Q ss_pred             HHHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE-eeCCCC---CCCCCCCCccCCCCeEEccCCCCC
Q 027408          112 KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS-GDVWNP---QPAPKDHPWRYMPNQAMTPHVSGT  181 (223)
Q Consensus       112 ~~~~~~-mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~-lDv~~~---ep~~~~~~l~~~~nv~~tPH~a~~  181 (223)
                      .+.... ++++++|++++.......+.+.+.+.+..+.... .-++..   .|.....+++....++++||.++.
T Consensus        84 ~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~  158 (290)
T 3b1f_A           84 KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK  158 (290)
T ss_dssp             HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC
T ss_pred             HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC
Confidence            456667 8999999999887766667787777652333222 112221   344444567777779999987654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.42  E-value=8.3e-13  Score=115.31  Aligned_cols=108  Identities=21%  Similarity=0.259  Sum_probs=91.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcc-cCCEEEEcCCCChhhhhccc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~-~aDvVv~~~p~~~~t~~~i~  111 (223)
                      +|.||+|+|+|+|+||+.+|+.++.+|++|+++|++....+..+.++...+ +.++++. +||+++.|     .+.+.|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh-----HHHhhcC
Confidence            799999999999999999999999999999999986422334555677665 7788887 89999854     3678999


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      .+.++.|| ..+|+|.+++++.++++ .+.|.++.+.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 68999999999999777 5889988876

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.41  E-value=4.8e-13  Score=121.38  Aligned_cols=122  Identities=11%  Similarity=0.131  Sum_probs=99.5

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh---C--CeecCCHHhhcc---cCCEEEEcCCCChhhh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR  107 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~---g--~~~~~~l~e~l~---~aDvVv~~~p~~~~t~  107 (223)
                      .++|||||+|.||..+|+.|...|++|.+|||++...+...+.   +  +....+++++++   ++|+|++++|..+.+.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            4689999999999999999999999999999987443333332   2  233578999876   5999999999877777


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e  158 (223)
                      .++ ++....+++|.+|||++++...+...+.+.+.+..+.+....|...+
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~  133 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGE  133 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHH
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCH
Confidence            766 67888999999999999999999999999999988876666665443

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.41  E-value=3.7e-13  Score=117.19  Aligned_cols=139  Identities=14%  Similarity=0.089  Sum_probs=97.1

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhccc----CCEEEEcCCCChhhhhccc
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK----CDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~----aDvVv~~~p~~~~t~~~i~  111 (223)
                      -++|||||+|.||.++|+.|+..|++|++||+++...+.+.+.|+....++++++++    +|+|++|+|. ..+..++ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl-   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL-   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence            357999999999999999999999999999998655555667788766788888765    6999999993 3444444 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE-eeCCCCC---CCCCCCCccCCCCeEEccCCC
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS-GDVWNPQ---PAPKDHPWRYMPNQAMTPHVS  179 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~-lDv~~~e---p~~~~~~l~~~~nv~~tPH~a  179 (223)
                      ++. ..++++++|+|++.-+..-.+++.+.+.  ...+.. --++..|   |......|+....+++||+-.
T Consensus        86 ~~l-~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~  154 (341)
T 3ktd_A           86 DAV-HTHAPNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQL  154 (341)
T ss_dssp             HHH-HHHCTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGG
T ss_pred             HHH-HccCCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCC
Confidence            333 3358999999998765433333433332  233322 3444433   223445677777899999743

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.40  E-value=5.4e-13  Score=121.15  Aligned_cols=121  Identities=12%  Similarity=0.101  Sum_probs=96.1

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----CCeecCCHHhhccc---CCEEEEcCCCChh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAKFEEDLDTMLPK---CDIVVVNTPLTEK  105 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~~~~~l~e~l~~---aDvVv~~~p~~~~  105 (223)
                      ..+.++|||||+|.||+.+|..|...|++|.+|||++...+...+.    ++....+++++++.   +|+|++++|..+.
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~   91 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG   91 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence            4677889999999999999999999999999999976333333332    67667789998876   9999999997777


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv  154 (223)
                      +..++ ++....++++.+|||++.|...+...+.+.+.+..+.....-|
T Consensus        92 v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv  139 (480)
T 2zyd_A           92 TDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGV  139 (480)
T ss_dssp             HHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCcc
Confidence            77776 5677889999999999999988888898889876665443333

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.40  E-value=6.9e-13  Score=117.92  Aligned_cols=102  Identities=20%  Similarity=0.262  Sum_probs=83.4

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecC---------------------------C
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE---------------------------D   85 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~---------------------------~   85 (223)
                      ++.|++|+|+|+|.||..+++.++.+|++|+++|+++...+..+++|...+.                           +
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            5789999999999999999999999999999999987555555666765432                           3


Q ss_pred             HHhhcccCCEEEEc--CCCChhhhhcccHHHHhcCCCCcEEEEcC--CCCccCH
Q 027408           86 LDTMLPKCDIVVVN--TPLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGAIMDT  135 (223)
Q Consensus        86 l~e~l~~aDvVv~~--~p~~~~t~~~i~~~~~~~mk~ga~ivn~s--rg~~vd~  135 (223)
                      ++++++++|+|+.+  +|.. .+..+++++.++.||+|++|||++  ||+.++.
T Consensus       249 l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            67788899999998  4432 355778899999999999999999  8775543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.39  E-value=2.3e-13  Score=115.57  Aligned_cols=112  Identities=19%  Similarity=0.283  Sum_probs=91.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~  114 (223)
                      ++|+|||+|.||..+|+.|...|++|.+||+++...+...+.|+....+++++++++|+|++|+|....+..++.  ++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            589999999999999999999999999999976444444455777777899999999999999996655555542  345


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      .+.+++++++|+++.+...+.+.|.+.+.+..+.
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  119 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            5778999999999999877788898888775544

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.38  E-value=7.5e-12  Score=105.23  Aligned_cols=143  Identities=15%  Similarity=0.137  Sum_probs=95.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe--ecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      ++|+|||+|.||+.+|+.|...|++|.+||+++...+...+.|+.  ...+++++ +++|+|++++|.. .+..++ ++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~-~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQ-LILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHH-HHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHH-HHHHHH-HHH
Confidence            489999999999999999999999999999976433444455652  35678888 9999999999932 333333 456


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC---CCCCCCCCccCCCCeEEccCCCCCcHHHH
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP---QPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~---ep~~~~~~l~~~~nv~~tPH~a~~t~~~~  186 (223)
                      ...++++++|+|++..+....+.+.+.+.  ++.+ ...++..   .|....+.++..+.++++|+-+. +.+..
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~-~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~-~~~~~  148 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIG-GHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT-DPEQL  148 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEE-EEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC-CHHHH
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEee-cCcccCCccCCHHHHhHHHhCCCcEEEecCCCC-CHHHH
Confidence            67789999999997766555555555433  2221 2234322   23333335566667888987543 44433

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.36  E-value=1.9e-12  Score=113.79  Aligned_cols=145  Identities=19%  Similarity=0.231  Sum_probs=102.4

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-------------------------CCHH
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-------------------------EDLD   87 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-------------------------~~l~   87 (223)
                      .+.+++|+|+|+|.||..+|+.++++|++|+++|+++...+.+.++|..+.                         .+++
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            578999999999999999999999999999999998765555666665432                         2567


Q ss_pred             hhcccCCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcC--CCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCC
Q 027408           88 TMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD  163 (223)
Q Consensus        88 e~l~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~ivn~s--rg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~  163 (223)
                      ++++++|+|+.++  |. ..+..+++++.++.||+|++|||++  +|+.+.                     ...|..  
T Consensus       261 e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e---------------------~t~~~~--  316 (381)
T 3p2y_A          261 DAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE---------------------LTEPGR--  316 (381)
T ss_dssp             HHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT---------------------TCCTTC--
T ss_pred             HHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCccc---------------------cccCCC--
Confidence            8899999999875  43 2345688999999999999999998  444321                     112211  


Q ss_pred             CCccCCCC--eEEccCCCCC-cHHHHHHHHHHHHHHHHHHHcC
Q 027408          164 HPWRYMPN--QAMTPHVSGT-TIDAQLRYAAGVKDMLDRYFKG  203 (223)
Q Consensus       164 ~~l~~~~n--v~~tPH~a~~-t~~~~~~~~~~~~~~i~~~~~g  203 (223)
                       . +....  +++-|++.+. ..++...+...+.+.+..+++.
T Consensus       317 -~-~~~~gV~~~~v~nlP~~vp~tAS~~~s~~l~~~l~~~~~~  357 (381)
T 3p2y_A          317 -T-IVHHGVTITSPLNLPATMPEHASELYAKNVTALLDLLLTD  357 (381)
T ss_dssp             -E-EEETTEEEECCSCTGGGSHHHHHHHHHHHHHHHHHHHEET
T ss_pred             -e-EEECCEEEEeeCCCchhhHHHHHHHHHHHHHHHHHHHhhC
Confidence             1 22233  4556677654 3456666665566655555543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.36  E-value=9.9e-13  Score=111.70  Aligned_cols=112  Identities=17%  Similarity=0.224  Sum_probs=90.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~  114 (223)
                      ++|+|||+|.||+.+|+.|...|++|.+||+++...+...+.|+....+++++++++|+|++++|....+..++.  ++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999975433334444777777899999999999999996665666553  255


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      .+.++++++||+++.|...+.+.+.+.+.+..+.
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~  118 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID  118 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6778999999999998877778888888775444

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.35  E-value=2.6e-12  Score=117.15  Aligned_cols=119  Identities=11%  Similarity=0.129  Sum_probs=96.3

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----hCCeecCCHHhhccc---CCEEEEcCCCChhhh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPK---CDIVVVNTPLTEKTR  107 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~e~l~~---aDvVv~~~p~~~~t~  107 (223)
                      ..+|||||+|.||+.+|..|...|++|.+|||++...+....     .++....+++++++.   +|+|++++|....+.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            458999999999999999999999999999998744443333     466667789998876   999999999777777


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      .++ ++....+++|.+||+++.+...+...+.+.+.+..+.....-|.
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVs  136 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVS  136 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcc
Confidence            766 56778899999999999998888888988888765554433333

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.35  E-value=6e-13  Score=110.52  Aligned_cols=98  Identities=14%  Similarity=0.210  Sum_probs=69.2

Q ss_pred             cccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC---------------hhHHHhhCCeecCCHHhhcccCC
Q 027408           30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------PQLEKETGAKFEEDLDTMLPKCD   94 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------~~~~~~~g~~~~~~l~e~l~~aD   94 (223)
                      ...++.+++|||||+|.||+.+|+.|...|++|++|||++..               .+.....+.....++++++++||
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   92 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE   92 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC
Confidence            356899999999999999999999999999999999997532               11122234444568899999999


Q ss_pred             EEEEcCCCChhhhhcccHHH-HhcCCCCcEEEEcCCC
Q 027408           95 IVVVNTPLTEKTRGMFDKDR-IAKMKKGVLIVNNARG  130 (223)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~-~~~mk~ga~ivn~srg  130 (223)
                      +|++++|......-+  .+. ...+ ++++||+++.|
T Consensus        93 vVilavp~~~~~~~~--~~i~~~~l-~g~ivi~~s~~  126 (245)
T 3dtt_A           93 LVVNATEGASSIAAL--TAAGAENL-AGKILVDIANP  126 (245)
T ss_dssp             EEEECSCGGGHHHHH--HHHCHHHH-TTSEEEECCCC
T ss_pred             EEEEccCcHHHHHHH--HHhhhhhc-CCCEEEECCCC
Confidence            999999955443222  233 3334 89999999943

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.34  E-value=1.2e-12  Score=110.85  Aligned_cols=111  Identities=15%  Similarity=0.119  Sum_probs=88.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH--HH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~--~~  114 (223)
                      ++|+|||+|.||+.+|+.|...|++|.+|| ++...+...+.|+....+++++++++|+|++|+|....+..++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999999 765555444557766778999999999999999965545444421  34


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      .+.++++++||+++.+...+.+.+.+.+.+..+.
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  116 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGAD  116 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            4568899999999999878888899988874443

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.33  E-value=6.6e-12  Score=110.92  Aligned_cols=99  Identities=22%  Similarity=0.300  Sum_probs=81.2

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec--CC-------------------------
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED-------------------------   85 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~-------------------------   85 (223)
                      ++.|++|+|+|+|.+|..+++.++.+|++|+++|+++...+..+.+|....  +.                         
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            689999999999999999999999999999999998766666666776543  11                         


Q ss_pred             --HHhhcccCCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcC--CCCc
Q 027408           86 --LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGAI  132 (223)
Q Consensus        86 --l~e~l~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~ivn~s--rg~~  132 (223)
                        ++++++++|+|+.++  |..+ +..+++++.++.||++++|||++  ||+.
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg~  300 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGGN  300 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred             HHHHHHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCCC
Confidence              677888999999877  4332 34678899999999999999999  6653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.33  E-value=4.5e-12  Score=112.32  Aligned_cols=100  Identities=20%  Similarity=0.291  Sum_probs=81.4

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----------------------------
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----------------------------   83 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----------------------------   83 (223)
                      .+.+.+|+|+|+|.+|..+|+.++.+|++|+++|+++...+.++++|..+.                             
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            478999999999999999999999999999999998755555556665421                             


Q ss_pred             CCHHhhcccCCEEEEcC--CCChhhhhcccHHHHhcCCCCcEEEEcC--CCCcc
Q 027408           84 EDLDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGAIM  133 (223)
Q Consensus        84 ~~l~e~l~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~ivn~s--rg~~v  133 (223)
                      .+++++++++|+|+.++  |.. ....+++++.++.||+|++|||+|  +|+.+
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~  319 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNI  319 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred             hHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence            15678889999999875  432 346788999999999999999998  55533

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.33  E-value=7.2e-12  Score=106.90  Aligned_cols=136  Identities=13%  Similarity=0.105  Sum_probs=87.7

Q ss_pred             HHHHHHcCCCccCcccCcccCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcc
Q 027408           13 GHHQVISGEWNVAGVAYRAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP   91 (223)
Q Consensus        13 ~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~   91 (223)
                      +...+++..|....       ...++|+||| +|.||.++|+.|+..|++|.++|+++.             .+.+++++
T Consensus         5 ~~~~~~~~~~~~~~-------~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-------------~~~~~~~~   64 (298)
T 2pv7_A            5 SYANENQFGFKTIN-------SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILA   64 (298)
T ss_dssp             --------CCCCSC-------TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHT
T ss_pred             HHhhhhccCccccC-------CCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-------------cCHHHHhc
Confidence            34556667785321       1356899999 999999999999999999999998652             15677889


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCC-CCCCccCCC
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMP  170 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~-~~~~l~~~~  170 (223)
                      +||+|++|+|... +..++ ++....++++++|++++..+....+++.+.+   ...  .+.   ..|.. +..+++...
T Consensus        65 ~aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~--~v~---~hP~~g~~~~~~~g~  134 (298)
T 2pv7_A           65 NADVVIVSVPINL-TLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGA--VLG---LHPMFGADIASMAKQ  134 (298)
T ss_dssp             TCSEEEECSCGGG-HHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSE--EEE---EEECSCTTCSCCTTC
T ss_pred             CCCEEEEeCCHHH-HHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCC--EEe---eCCCCCCCchhhcCC
Confidence            9999999999543 44444 4566778999999999876543344444432   122  121   22321 122455556


Q ss_pred             CeEEccCC
Q 027408          171 NQAMTPHV  178 (223)
Q Consensus       171 nv~~tPH~  178 (223)
                      .+++|||-
T Consensus       135 ~~~l~~~~  142 (298)
T 2pv7_A          135 VVVRCDGR  142 (298)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEecCC
Confidence            78999964

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.32  E-value=1.5e-12  Score=110.40  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=85.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH--HH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~--~~  114 (223)
                      ++|+|||+|.||+.+|+.|...|++|.+|||++...+...+.|+....+++++++++|+|++|+|....+..++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            4799999999999999999999999999999764444445557777778999999999999999866565554432  13


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      ++.+++++++|+++.....+...+.+.+.+.
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            4567899999998777766666777777653

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.32  E-value=2.5e-12  Score=108.45  Aligned_cols=109  Identities=12%  Similarity=0.142  Sum_probs=86.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (223)
                      ++|+|||+|.||..+|+.|.. |++|.+||+++...+...+.|+...+ ++++++++|+|++|+|....+..++ ++..+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 99999999976433334444555554 7788889999999999655555554 55667


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       117 ~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      .+++++++|+++.+...+.+.+.+.+.+..+.
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  110 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGVT  110 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            88999999999998888888899988875443

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.32  E-value=3.2e-12  Score=109.54  Aligned_cols=113  Identities=14%  Similarity=0.198  Sum_probs=89.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH--H
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--D  113 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~--~  113 (223)
                      -++|+|||+|.||+.+|+.|...|++|.+||+++...+...+.|+....+++++++++|+|++++|....+..++..  .
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~  109 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG  109 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence            36899999999999999999999999999999865444455567776778999999999999999965555544322  1


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      .++.++++.++|+++.+.....+.+.+.+....+.
T Consensus       110 ~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~  144 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR  144 (316)
T ss_dssp             GGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            34678899999999998777778888888665444

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.31  E-value=4.5e-12  Score=115.12  Aligned_cols=118  Identities=12%  Similarity=0.110  Sum_probs=94.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----hCCeecCCHHhhc---ccCCEEEEcCCCChhhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTML---PKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~e~l---~~aDvVv~~~p~~~~t~~  108 (223)
                      ++|||||+|.||+.+|..|...|++|.+|||++...+...+     .++....++++++   +++|+|++++|....+..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            57999999999999999999999999999998644333333     4566677899987   489999999997666766


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ++ ++....++++.+||+++.+...+...+.+.+.+..+......|+
T Consensus        83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~  128 (482)
T 2pgd_A           83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVS  128 (482)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCC
Confidence            66 46777899999999999998888888888888765554444443

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.31  E-value=5e-12  Score=114.62  Aligned_cols=118  Identities=14%  Similarity=0.152  Sum_probs=93.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hh---CCeecCCHHhhccc---CCEEEEcCCCChhhhhc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ET---GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~---g~~~~~~l~e~l~~---aDvVv~~~p~~~~t~~~  109 (223)
                      ++|||||+|.||+.+|..|...|++|.+|||++...+... ..   ++....+++++++.   +|+|++++|....+..+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            5799999999999999999999999999999753333332 22   66667789998876   99999999977666666


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      + ++....+++|.+||+++.+...+...+.+.+.+..+......|.
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~  130 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVS  130 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEEC
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCC
Confidence            6 56677899999999999998888888888887766654444443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.28  E-value=6.2e-12  Score=114.12  Aligned_cols=119  Identities=13%  Similarity=0.131  Sum_probs=93.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhhC-------CeecCCHHhhccc---CCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETG-------AKFEEDLDTMLPK---CDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g-------~~~~~~l~e~l~~---aDvVv~~~p~~~~  105 (223)
                      ++|||||+|.||+.+|..|...|++|.+|||++...+.. +..+       +....+++++++.   +|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            479999999999999999999999999999975333322 2334       5566789898864   9999999997666


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      +..++ ++....++++.+||+++.|...+...+.+.+.+..+......|..
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~g  131 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccC
Confidence            66665 566778999999999999988888888888887666544444443

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.25  E-value=8.9e-12  Score=108.28  Aligned_cols=136  Identities=18%  Similarity=0.191  Sum_probs=93.7

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .+.+++|+|||+|.||+++|+.|+..|++|++++++... .+.+...|+... ++++++++||+|++|+|.... ..++.
T Consensus        13 ~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~-~~v~~   90 (338)
T 1np3_A           13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQ-GRLYK   90 (338)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHH-HHHHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHH-HHHHH
Confidence            578999999999999999999999999999999997643 445566777655 888999999999999994332 33433


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCC---ccC---CCCeEEccCCC
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP---WRY---MPNQAMTPHVS  179 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~---l~~---~~nv~~tPH~a  179 (223)
                      ++....++++++|++++ |  +..  ..+.+.    ....+||+...|..+.+.   ++.   ..++++|||-.
T Consensus        91 ~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~  155 (338)
T 1np3_A           91 EEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD  155 (338)
T ss_dssp             HHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred             HHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence            36667899999999874 2  222  222111    112344554455433322   333   45688899854

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.25  E-value=4.7e-11  Score=101.83  Aligned_cols=138  Identities=14%  Similarity=0.155  Sum_probs=93.8

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-------CCeecCCHHhhcccCCEEEEcCCCChhh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------GAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      -..|+|||||+|.||..+|..+. .|++|++||+++...+.+...       ++...+++++ +++||+|+.++|.+.+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            46789999999999999999999 999999999986444433333       4555667776 88999999999988877


Q ss_pred             hhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHH
Q 027408          107 RGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDA  185 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~iv-n~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~  185 (223)
                      +..+..+ +..+ ++++++ |+|.-   +...+.+.+. ...+..++..+.  |.+      ..+-+.++|+-. .+.+.
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti---~~~~~a~~~~-~~~r~~G~Hf~~--Pv~------~~~lveiv~g~~-t~~~~  152 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVI---SVDDIAERLD-SPSRFLGVHWMN--PPH------VMPLVEIVISRF-TDSKT  152 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSS---CHHHHHTTSS-CGGGEEEEEECS--STT------TCCEEEEEECTT-CCHHH
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCc---CHHHHHHHhh-cccceEeEEecC--ccc------cCCEEEEECCCC-CCHHH
Confidence            7666554 5566 999885 67663   3445554442 233455666554  332      235566777422 34555


Q ss_pred             HHH
Q 027408          186 QLR  188 (223)
Q Consensus       186 ~~~  188 (223)
                      .++
T Consensus       153 ~~~  155 (293)
T 1zej_A          153 VAF  155 (293)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.24  E-value=1.1e-11  Score=103.69  Aligned_cols=101  Identities=15%  Similarity=0.248  Sum_probs=78.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhH-HHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~-~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      ++.+++|+|||+|.||+.+|+.+...|++ |.+||+++...+. .+..++....+++++++++|+|++++|... ...++
T Consensus         7 ~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~-~~~v~   85 (266)
T 3d1l_A            7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSA-FAELL   85 (266)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHH-HHHHH
T ss_pred             CCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHH-HHHHH
Confidence            46678999999999999999999988998 8999997533332 333477767789999999999999999442 23333


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCH
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDT  135 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~  135 (223)
                       ++..+.+++++++|+++.|...+.
T Consensus        86 -~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           86 -QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             -HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             -HHHHhhcCCCcEEEECCCCCchHH
Confidence             455667889999999999876543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.23  E-value=2.7e-11  Score=109.46  Aligned_cols=96  Identities=20%  Similarity=0.260  Sum_probs=80.4

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      +..|.|++++|+|+|.||+.+|+.|+++|++|+++|+++.....+...++. +.++++++..+|+|+.+..    +..++
T Consensus       260 g~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~d-v~~lee~~~~aDvVi~atG----~~~vl  334 (488)
T 3ond_A          260 DVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQ-VLTLEDVVSEADIFVTTTG----NKDII  334 (488)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGTTTTCSEEEECSS----CSCSB
T ss_pred             CCcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCc-cCCHHHHHHhcCEEEeCCC----Chhhh
Confidence            346899999999999999999999999999999999875333344445554 3588999999999987654    56678


Q ss_pred             cHHHHhcCCCCcEEEEcCCCC
Q 027408          111 DKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +.+.++.||++++|+|++++.
T Consensus       335 ~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          335 MLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             CHHHHTTSCTTEEEEESSSTT
T ss_pred             hHHHHHhcCCCeEEEEcCCCC
Confidence            899999999999999999983

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.22  E-value=1.2e-11  Score=103.15  Aligned_cols=103  Identities=13%  Similarity=0.165  Sum_probs=79.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCC--CCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~--~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      ++|+|||+|.||..+|+.|...|++|++||+.  +...+...+.|+.  .+++++++++|+|++|+|.......+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            48999999999999999999999999999873  2112223334665  57888899999999999965555443  466


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      .+.+++  ++|+++.+...+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            677776  99999888777777888887653

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.19  E-value=2.1e-11  Score=109.74  Aligned_cols=97  Identities=16%  Similarity=0.216  Sum_probs=77.8

Q ss_pred             cCCCC-CEEEEEcccHHHHHHHHHHccC------CCeEEEEcCC-CCChhHHHhhCCee----cCCHHhhcccCCEEEEc
Q 027408           32 YDLEG-KTVGTVGCGRIGKLLLQRLKPF------NCNLLYHDRV-KMDPQLEKETGAKF----EEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        32 ~~l~g-~~igIiG~G~iG~~iA~~l~~~------G~~V~~~d~~-~~~~~~~~~~g~~~----~~~l~e~l~~aDvVv~~   99 (223)
                      ..|.| ++|||||+|.||.++|+.|+..      |++|++.++. ....+.+...|+..    ..++++++++||+|+++
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILa  128 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLL  128 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEEC
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEEC
Confidence            46899 9999999999999999999988      9998766554 45566677778764    25799999999999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +|..... .++ .+.+..||+|++ |..+.|-
T Consensus       129 VP~~~~~-eVl-~eI~p~LK~GaI-Ls~AaGf  157 (525)
T 3fr7_A          129 ISDAAQA-DNY-EKIFSHMKPNSI-LGLSHGF  157 (525)
T ss_dssp             SCHHHHH-HHH-HHHHHHSCTTCE-EEESSSH
T ss_pred             CChHHHH-HHH-HHHHHhcCCCCe-EEEeCCC
Confidence            9965553 344 478899999998 5666774

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.18  E-value=2.7e-11  Score=109.57  Aligned_cols=138  Identities=11%  Similarity=0.166  Sum_probs=93.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--CCeEEEEcCCCCChhHHH---------------h----hCCeecCCHHhhcccCCE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK---------------E----TGAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~---------------~----~g~~~~~~l~e~l~~aDv   95 (223)
                      ++|+|||+|.||..+|..|...  |++|++||+++...+...               .    .++...+++++.+++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            6899999999999999999877  899999999753222211               0    234555688888999999


Q ss_pred             EEEcCCCChhhhh-----------c--ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEee-CCCCCCCC
Q 027408           96 VVVNTPLTEKTRG-----------M--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPAP  161 (223)
Q Consensus        96 Vv~~~p~~~~t~~-----------~--i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lD-v~~~ep~~  161 (223)
                      |++|+|.......           +  ..++..+.++++++||+.|...+-..+.+.+.+.+....+.... ++.+|+..
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~~  165 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLA  165 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHhh
Confidence            9999984433221           1  12456678899999999999888778888888887643211112 24555544


Q ss_pred             CCCC---ccCCCCeEE
Q 027408          162 KDHP---WRYMPNQAM  174 (223)
Q Consensus       162 ~~~~---l~~~~nv~~  174 (223)
                      +...   +...+++++
T Consensus       166 ~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          166 EGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             TTSHHHHHHSCSCEEE
T ss_pred             cccchhhccCCCEEEE
Confidence            4332   234455543

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.79  E-value=2.5e-12  Score=103.98  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=74.1

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      +.+++|+|||+|.||+.+|+.|...|++|.+|+|++. .+.....++... +++++++++|+|++++|.. .+..++  +
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~--~   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA--E   91 (201)
Confidence            6788999999999999999999999999999999764 222233455544 7888899999999999964 455554  2


Q ss_pred             HHhcCCCCcEEEEcCCCCcc
Q 027408          114 RIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~v  133 (223)
                       +..++++++|||+++|-..
T Consensus        92 -l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 -LADSLKGRVLIDVSNNQKM  110 (201)
Confidence             4456789999999999853

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.16  E-value=1.7e-10  Score=96.53  Aligned_cols=108  Identities=14%  Similarity=0.158  Sum_probs=81.2

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCCh--hhhh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE--KTRG  108 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~--~t~~  108 (223)
                      .++.| +++|||+|.||+.+++.|...|++|.++||+... .+.++.++.. ..+++++ +++|+|++|+|...  .+..
T Consensus       113 ~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~  189 (263)
T 2d5c_A          113 IPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSAS  189 (263)
T ss_dssp             CCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCC
T ss_pred             CCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCC
Confidence            46889 9999999999999999999999999999997532 2344455655 4578888 99999999999653  2223


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i  147 (223)
                      .+.   .+.++++++++|++.+.. +. .+.+.+++..+
T Consensus       190 ~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~  223 (263)
T 2d5c_A          190 PLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGL  223 (263)
T ss_dssp             SSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTC
T ss_pred             CCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcC
Confidence            343   467899999999998744 33 47776666443

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.16  E-value=1.7e-10  Score=99.44  Aligned_cols=108  Identities=12%  Similarity=0.192  Sum_probs=81.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCC----CeEEEEcCCCC--ChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM--DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G----~~V~~~d~~~~--~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      ....++|+|||+|.||..+|..|...|    .+|.+|||++.  ..+...+.|+....+..++++++|+|++|+| ....
T Consensus        19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~   97 (322)
T 2izz_A           19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHII   97 (322)
T ss_dssp             ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGH
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHH
Confidence            345578999999999999999999888    78999999764  3334456688777788899999999999999 3344


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ..++ .+....++++++||+++.|-  ..+.+.+.+.+
T Consensus        98 ~~vl-~~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~  132 (322)
T 2izz_A           98 PFIL-DEIGADIEDRHIVVSCAAGV--TISSIEKKLSA  132 (322)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECCTTC--CHHHHHHHHHT
T ss_pred             HHHH-HHHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh
Confidence            4433 45566788899999998764  34566666764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.16  E-value=4e-11  Score=99.36  Aligned_cols=104  Identities=17%  Similarity=0.314  Sum_probs=78.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC----eEEEEcCCCCChhHH-HhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~-~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ++|+|||+|.||..+++.|...|+    +|.+|||++...+.. +.+|+....+++++++++|+|++++|.. ....++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~-~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPD-LYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTT-THHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHH-HHHHHH-
Confidence            689999999999999999999998    999999976433333 3468887889999999999999999732 233333 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ++....+++++++|++..|-  ..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            55666788899999776654  35566666654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.15  E-value=9.8e-11  Score=89.12  Aligned_cols=91  Identities=12%  Similarity=0.214  Sum_probs=71.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhhCCe--ecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~--~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .+++|+|||+|.||+.+++.|...|++|.+++|++... +.++.++..  ...+++++++++|+|+.++|..   ..++.
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~   96 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVE   96 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEee
Confidence            48999999999999999999999999999999976332 334555653  4578899999999999999954   23343


Q ss_pred             HHHHhcCCCCcEEEEcCCCC
Q 027408          112 KDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~  131 (223)
                      .   +.++++.+++|++...
T Consensus        97 ~---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           97 E---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             G---GGCCTTCEEEECCSSC
T ss_pred             H---HHcCCCCEEEEccCCc
Confidence            3   5678899999987643

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.15  E-value=1.1e-10  Score=98.91  Aligned_cols=105  Identities=13%  Similarity=0.142  Sum_probs=80.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCC---eEEEEcCCCCChhHH-HhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~-~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .++|||||+|+||..+++.+...|+   +|.+|||++...+.. +.+|+....+..++++++|+|++++|.  +...-+-
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p--~~~~~vl   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP--HQIKMVC   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG--GGHHHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH--HHHHHHH
Confidence            4789999999999999999998898   899999987443333 335887777899999999999999983  3222223


Q ss_pred             HHHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          112 KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       112 ~~~~~~-mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ++.... ++++++||+++.|-  ..+.|.+.+..
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            455555 78888999887764  45677777765

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.14  E-value=9.1e-11  Score=99.01  Aligned_cols=95  Identities=16%  Similarity=0.263  Sum_probs=73.9

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh--hhh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK--TRG  108 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~--t~~  108 (223)
                      .++.|++|+|||+|.+|+++|+.|...|++|.++||+... .+.++.+++...++++++++++|+|++++|....  +..
T Consensus       125 ~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~  204 (275)
T 2hk9_A          125 PEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPE  204 (275)
T ss_dssp             TTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCC
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCC
Confidence            4688999999999999999999999999999999997522 2233344555555788899999999999996542  112


Q ss_pred             cccHHHHhcCCCCcEEEEcCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .++   .+.++++++++|++.
T Consensus       205 ~i~---~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          205 IFN---YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             SSC---GGGCCTTSEEEESSS
T ss_pred             CCC---HHHcCCCCEEEEcCC
Confidence            332   456899999999988

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=99.11  E-value=1.6e-10  Score=101.33  Aligned_cols=108  Identities=22%  Similarity=0.276  Sum_probs=84.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhhCCeecCCHHhhcc-cCCEEEEcCCCChhhhhcc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~-~aDvVv~~~p~~~~t~~~i  110 (223)
                      +|.|++|+|+|+|+||+.+|+.|..+|++|+++|++.... +.+++++...+ +.++++. +||+++.|.     +.+++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccc-----hHHHh
Confidence            6999999999999999999999999999999999865222 23445576655 6677776 899999875     35678


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +.+.++.++ ..+|++.+++++.+++ ..+.|+++.+.
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            877888884 5688999999988755 55667766654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.11  E-value=1.1e-10  Score=98.57  Aligned_cols=92  Identities=18%  Similarity=0.299  Sum_probs=72.3

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      ++|+|||+ |.||+.+|+.|...|++|.+|||++...+...+.|+.. .++.++++++|+|++++|... +..++ ++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCC-CCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCc-CCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            68999999 99999999999999999999999754333344456544 367788899999999999433 33333 5566


Q ss_pred             hcCCCCcEEEEcCCCC
Q 027408          116 AKMKKGVLIVNNARGA  131 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~  131 (223)
                      ..++++++||+++.|.
T Consensus        89 ~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           89 PRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGSCTTCEEEESCSHH
T ss_pred             HhCCCCCEEEECCCCc
Confidence            7788999999988876

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.11  E-value=1.6e-09  Score=97.56  Aligned_cols=140  Identities=16%  Similarity=0.134  Sum_probs=95.1

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--------hHHHhhC-------------CeecCCHHhhcccCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--------QLEKETG-------------AKFEEDLDTMLPKCD   94 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--------~~~~~~g-------------~~~~~~l~e~l~~aD   94 (223)
                      =++|+|||+|.||..+|..+...|++|++||+++...        +...+.|             +...++++ .+++||
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aD  132 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCD  132 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCC
Confidence            3789999999999999999999999999999975310        0111112             23456775 688999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEE
Q 027408           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM  174 (223)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~  174 (223)
                      +||.++|.+.+.+..+-++..+.++++++|++.+.+  +....+.+.+.. .-+..++..|.  |.+      ..+-+.+
T Consensus       133 lVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~------~m~LvEI  201 (460)
T 3k6j_A          133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN------VIRLVEI  201 (460)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT------TCCEEEE
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh------hCCEEEE
Confidence            999999988777666667788889999999755444  445566655543 34567777655  432      2334566


Q ss_pred             ccCCCCCcHHHHHH
Q 027408          175 TPHVSGTTIDAQLR  188 (223)
Q Consensus       175 tPH~a~~t~~~~~~  188 (223)
                      +|+- ..+.++.++
T Consensus       202 v~g~-~Ts~e~~~~  214 (460)
T 3k6j_A          202 IYGS-HTSSQAIAT  214 (460)
T ss_dssp             ECCS-SCCHHHHHH
T ss_pred             EeCC-CCCHHHHHH
Confidence            6642 234554443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.11  E-value=4.1e-10  Score=93.59  Aligned_cols=101  Identities=12%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      ++|+|||+|.||+.+++.+...|.+|.+||+++...+ ..+.+|+....+++++++++|+|++++| ....     .+.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence            5899999999999999999999999999999753332 2334577767789999999999999999 2222     4556


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      ..++++.++|+.+.|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            66778999999976643  45566666644

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.08  E-value=1.3e-10  Score=94.50  Aligned_cols=95  Identities=15%  Similarity=0.194  Sum_probs=70.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      .+++|+|||+|.||+.+|+.+...|++|.++||++...+.....++... +++++++++|+|++++|. .....++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            4578999999999999999999999999999997532232333355544 788999999999999994 33444442   


Q ss_pred             HhcCCCCcEEEEcCCCCccC
Q 027408          115 IAKMKKGVLIVNNARGAIMD  134 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd  134 (223)
                      ++.+.+++++|++++|...+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            33333799999999987543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.07  E-value=3.7e-10  Score=91.51  Aligned_cols=80  Identities=15%  Similarity=0.254  Sum_probs=62.0

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .++..++|+|||+|.||..+|+.|...|.+|.+|||++.                  .++++|+|++++| .+.+..++ 
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~-   74 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALA-   74 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHH-
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHH-
Confidence            468899999999999999999999999999999998652                  4678999999999 44454444 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCc
Q 027408          112 KDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~  132 (223)
                      ++..+.++ ++++|++++|--
T Consensus        75 ~~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           75 KQYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             HHTHHHHT-TSEEEECCCCBC
T ss_pred             HHHHHhcC-CCEEEEECCCCC
Confidence            34445677 999999999765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.07  E-value=3.7e-10  Score=101.06  Aligned_cols=116  Identities=12%  Similarity=0.122  Sum_probs=85.1

Q ss_pred             cccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh------------------hCCeecCCHHhhcc
Q 027408           30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE------------------TGAKFEEDLDTMLP   91 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~------------------~g~~~~~~l~e~l~   91 (223)
                      .+++..-++|+|||+|.||..+|..|.. |++|++||+++...+....                  .++...+++++.++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            3567777899999999999999999988 9999999997533222221                  13455678899999


Q ss_pred             cCCEEEEcCCCChhh-------hhc--ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 027408           92 KCDIVVVNTPLTEKT-------RGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t-------~~~--i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i  147 (223)
                      +||+|++|+|.....       ..+  ..+...+ +++++++|+.|.-++-..+.+.+.+.+..+
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            999999999954211       111  1245666 899999999999888888889888876544

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.04  E-value=6.1e-10  Score=94.85  Aligned_cols=116  Identities=14%  Similarity=0.090  Sum_probs=80.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------hh------------------CCeecCCHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET------------------GAKFEEDLD   87 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~------------------g~~~~~~l~   87 (223)
                      ++|+|||+|.||..+|..+...|++|++||+++...+...           +.                  ++...++++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            6899999999999999999999999999999753222110           11                  233456888


Q ss_pred             hhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        88 e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      +.+++||+|++++|.+.+.+..+.++..+.++++++|++.+.+-  ....+.+.+.. .-...+...+
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~-~~~~~g~h~~  160 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTR-QDRFAGLHFF  160 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEEEC
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCC-cccEEEEecC
Confidence            88999999999999766554444456667788899988665553  34455554432 1233455543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.02  E-value=6.1e-10  Score=92.59  Aligned_cols=100  Identities=14%  Similarity=0.189  Sum_probs=73.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhHH-HhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~-~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      ++|+|||+|.||..+|..|...| .+|.+|||++...+.. +.+|+....++++++ ++|+|++++| ....     ++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~-----~~v   73 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDM-----EAA   73 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHH-----HHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhH-----HHH
Confidence            48999999999999999998889 9999999975333333 334777667788888 9999999999 3333     334


Q ss_pred             HhcCCC-CcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          115 IAKMKK-GVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       115 ~~~mk~-ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      +..+++ ++++|+++.|--  .+.+.+.+..+
T Consensus        74 ~~~l~~~~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           74 CKNIRTNGALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             HTTCCCTTCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             HHHhccCCCEEEEecCCCC--HHHHHHHcCCC
Confidence            444432 889999866543  36677776653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.01  E-value=2.4e-09  Score=96.27  Aligned_cols=109  Identities=14%  Similarity=0.185  Sum_probs=83.1

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------------hCCeecCCHHhhcccCCE
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------------TGAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------------~g~~~~~~l~e~l~~aDv   95 (223)
                      .-+|+|||+|.||..+|..|...|++|++||+++...+....                    .++...+++.+.+++||+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            347999999999999999999999999999998755443322                    123455789899999999


Q ss_pred             EEEcCCCChh----------hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408           96 VVVNTPLTEK----------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus        96 Vv~~~p~~~~----------t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      |++|+|....          .+.. .+...+.+++++++|+.|.-++-..+.+.+.+.+.
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v-~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAA-AREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHH-HHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEEcCCCCccccCCccHHHHHHH-HHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            9999874321          2222 25677889999999999976666667777777653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.01  E-value=1.2e-09  Score=98.29  Aligned_cols=107  Identities=14%  Similarity=0.210  Sum_probs=80.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------------hCCeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------------TGAKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------------~g~~~~~~l~e~l~~aDvV   96 (223)
                      ++|+|||+|.||..+|..|...|++|++||+++...+...+                    .++...+++++++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            68999999999999999999999999999997532222211                    1234557889999999999


Q ss_pred             EEcCCCCh---------hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408           97 VVNTPLTE---------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus        97 v~~~p~~~---------~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      ++|+|...         ..... -++..+.+++++++|+.|.-.+-..+.+.+.+.+
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v-~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDA-ARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHH-HHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHH-HHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998543         22222 3567778999999999997665556666666655

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.00  E-value=6.3e-10  Score=99.69  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=79.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------------------hC-CeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~l~e~l~~aDvV   96 (223)
                      ++|+|||+|.||..+|..|...|++|+++|+++...+....                   .+ +...+++++.+++||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            48999999999999999999999999999997533222222                   22 44556888888999999


Q ss_pred             EEcCCCChh---------hhhcccHHHHhcCCC---CcEEEEcCCCCccC-HHHHHHHHHh
Q 027408           97 VVNTPLTEK---------TRGMFDKDRIAKMKK---GVLIVNNARGAIMD-TQAVVDACSS  144 (223)
Q Consensus        97 v~~~p~~~~---------t~~~i~~~~~~~mk~---ga~ivn~srg~~vd-~~al~~~L~~  144 (223)
                      ++|+|....         ....+ ++..+.+++   +++||+.|...+-. .+.+.+.+.+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999985443         33322 455667888   99999998766655 5667777766

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.00  E-value=7.8e-10  Score=96.74  Aligned_cols=99  Identities=13%  Similarity=0.063  Sum_probs=74.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC--------------CeecCCHHhhcccCCEEEEcC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--------------AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g--------------~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      ..++|+|||.|.||..+|..|...|.+|.+|+|++...+...+.+              +...+++++.++++|+|++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            347899999999999999999999999999999753323222222              234468889999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCH
Q 027408          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT  135 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~  135 (223)
                      |.. ....+ -++....+++++++|+++.|-..+.
T Consensus       108 p~~-~~~~v-l~~i~~~l~~~~ivvs~~kGi~~~t  140 (356)
T 3k96_A          108 PSF-AFHEV-ITRMKPLIDAKTRIAWGTKGLAKGS  140 (356)
T ss_dssp             CHH-HHHHH-HHHHGGGCCTTCEEEECCCSCBTTT
T ss_pred             CHH-HHHHH-HHHHHHhcCCCCEEEEEeCCCCcCc
Confidence            932 22322 3566677889999999998766553

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.98  E-value=7.3e-10  Score=95.16  Aligned_cols=111  Identities=12%  Similarity=0.114  Sum_probs=79.8

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCCh-hHHHhhC--CeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDP-QLEKETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~-~~~~~~g--~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      ...++|||||+|.||+.+++.+.. +|. +|.+|||++... +..+.++  +....+++++++++|+|++++|..   ..
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~  209 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EP  209 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Cc
Confidence            467899999999999999999865 487 799999976332 2334445  666789999999999999999943   44


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEee
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lD  153 (223)
                      ++..   +.+++|++|++++....-. ..+.+.+.+...  ..+|
T Consensus       210 v~~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          210 ILFG---EWVKPGAHINAVGASRPDW-RELDDELMKEAV--LYVD  248 (312)
T ss_dssp             CBCG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSE--EEES
T ss_pred             ccCH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCE--EEEC
Confidence            5544   5789999999997665532 333333333222  3566

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.97  E-value=3.1e-09  Score=96.43  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=82.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------hC-------------CeecCCHHhhcc
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLP   91 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~e~l~   91 (223)
                      -++|||||+|.||..+|..+...|++|++||+++...+...+           .|             +...++++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            358999999999999999999999999999997633322211           12             23345664 588


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv-n~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      +||+|+.++|.+.+.+..+-.+..+.++++++|+ |+|.-   +...+.+.+.. .-...++..|.
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti---~i~~ia~~~~~-p~~~ig~hf~~  145 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI---SITAIAAEIKN-PERVAGLHFFN  145 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS---CHHHHTTTSSS-GGGEEEEEECS
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC---CHHHHHHHccC-ccceEEeeecC
Confidence            9999999999877666556677788899999995 55543   34555555532 34556777554

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.95  E-value=2.2e-09  Score=89.13  Aligned_cols=99  Identities=18%  Similarity=0.340  Sum_probs=72.4

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCC----CeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .++|+|||+|.||+.+|+.|...|    .+|.+|||++..      .|+....+++++++++|+|++++|. .....++ 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~-   75 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVL-   75 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHH-
Confidence            468999999999999999998888    689999997643      4677667888999999999999993 3333333 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      .+....+ ++..+|....|  ++.+.+.+.+..+
T Consensus        76 ~~l~~~l-~~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           76 NNIKPYL-SSKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             HHSGGGC-TTCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             HHHHHhc-CCCEEEEECCC--CCHHHHHHHhCCC
Confidence            3444555 45666666554  3445666666553

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.94  E-value=3.7e-09  Score=91.46  Aligned_cols=105  Identities=16%  Similarity=0.191  Sum_probs=76.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-CC--------------eecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GA--------------KFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-g~--------------~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ++|+|||+|.||..+|..|...|++|.++++++...+...+. +.              ...++++++++++|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            689999999999999999999999999999975333323222 21              234678888899999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      .... ..++ ++....+++++++|+. .|.......+.+.+.+
T Consensus        85 ~~~~-~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIHH-ASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGGH-HHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chHH-HHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            5443 3333 5666778999999998 5523344445565655

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.93  E-value=1.8e-09  Score=92.64  Aligned_cols=105  Identities=12%  Similarity=0.047  Sum_probs=74.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcC--CCCChhHHHhhCC-----------eecC--CHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR--VKMDPQLEKETGA-----------KFEE--DLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~g~-----------~~~~--~l~e~l~~aDvVv~~~p  101 (223)
                      ++|+|||+|.||..+|..|...|++|.+|+|  ++...+...+.+.           ...+  ++++.++++|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4899999999999999999988999999998  6432333333332           2334  67788899999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCC---c-cCHHHHHHHHHh
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGA---I-MDTQAVVDACSS  144 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~---~-vd~~al~~~L~~  144 (223)
                      .. .+..++ ++... +++++++|+++.|-   - -..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            43 333333 45556 88899999998775   1 122445566654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.92  E-value=3.1e-09  Score=96.35  Aligned_cols=109  Identities=12%  Similarity=0.163  Sum_probs=77.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--------------------CCeecCCHHhhcccCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------------GAKFEEDLDTMLPKCD   94 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~l~e~l~~aD   94 (223)
                      -.++|+|||+|.||..+|..|...|++|++||+++...+...+.                    .+...+++++.+++||
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD   86 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD   86 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence            45799999999999999999999999999999975322222211                    1344567778889999


Q ss_pred             EEEEcCCCC---------hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408           95 IVVVNTPLT---------EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus        95 vVv~~~p~~---------~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      +|++|+|..         ...... -++..+.++++++||+.|.-.+-..+.+.+.+.+
T Consensus        87 vviiaVptp~~~~~~~dl~~v~~v-~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           87 VQFIAVGTPPDEDGSADLQYVLAA-ARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHH-HHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEEeCCCcccCCCccHHHHHHH-HHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            999999842         222222 2556678999999999984334444445555543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.91  E-value=1e-09  Score=89.48  Aligned_cols=90  Identities=18%  Similarity=0.275  Sum_probs=66.4

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEE-EcCCCCChh-HHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~-~d~~~~~~~-~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      -++|+|||+|.||..+|+.|...|++|.+ +||++...+ ..+..+.....+..+.++++|+|++++|.. ..     .+
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~-~~-----~~   96 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYD-SI-----AD   96 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGG-GH-----HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChH-HH-----HH
Confidence            46899999999999999999999999998 999764333 344556654445566688999999999921 11     33


Q ss_pred             HHhcC--CCCcEEEEcCCCC
Q 027408          114 RIAKM--KKGVLIVNNARGA  131 (223)
Q Consensus       114 ~~~~m--k~ga~ivn~srg~  131 (223)
                      .+..+  .++.++|+++.|-
T Consensus        97 v~~~l~~~~~~ivi~~~~g~  116 (220)
T 4huj_A           97 IVTQVSDWGGQIVVDASNAI  116 (220)
T ss_dssp             HHTTCSCCTTCEEEECCCCB
T ss_pred             HHHHhhccCCCEEEEcCCCC
Confidence            33333  3578999998764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.91  E-value=2.3e-09  Score=86.25  Aligned_cols=116  Identities=19%  Similarity=0.241  Sum_probs=79.9

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhhC-------CeecCCHHhhcccCCEEEEcCCCChhhh
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETG-------AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g-------~~~~~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      ++|+|+| .|.||+.+++.|...|++|.+++|++...+. .+..+       +. ..+++++++++|+|++++|. ..+.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hhHH
Confidence            4799999 9999999999999999999999997532222 22222       33 35788888999999999993 2233


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccC------------HHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMD------------TQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd------------~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      .++ ++..+.+ +++++++++.|--.+            .+.+.+.+...    ..++++.+.|.
T Consensus        79 ~~~-~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~v~~~~~~~~  137 (212)
T 1jay_A           79 DTA-RDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE----KVVSALHTIPA  137 (212)
T ss_dssp             HHH-HHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS----CEEECCTTCCH
T ss_pred             HHH-HHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCC----eEEEEccchHH
Confidence            332 2333445 489999999876532            56677776532    35677766553

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.91  E-value=5.4e-09  Score=92.74  Aligned_cols=106  Identities=12%  Similarity=0.127  Sum_probs=77.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC------------------eecCCHHhhcccCCEEEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA------------------KFEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~------------------~~~~~l~e~l~~aDvVv~   98 (223)
                      ++|+|||+|.||..+|..|.. |++|++||+++...+.....+.                  ...+++.+.++++|+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            489999999999999999998 9999999997533332222221                  334567788889999999


Q ss_pred             cCCCCh----------hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408           99 NTPLTE----------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus        99 ~~p~~~----------~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      |+|...          .....+ +...+ ++++++||+.+.-++-..+.+.+.+.+.
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999653          233332 45556 8899999997777766677777776554

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.91  E-value=3.1e-09  Score=90.08  Aligned_cols=109  Identities=13%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec------------CCHHhhcc---cCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------------EDLDTMLP---KCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------------~~l~e~l~---~aDvVv~~~p  101 (223)
                      ++|+|||+|.||..+|..|...|++|.+|+|++...+...+.+....            .+.+++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            58999999999999999999999999999997533333333343211            13345544   8999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      . ..+..++ ++....+++++++|+++.|- -..+.+.+.+.+.++.
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            3 2333333 45667788999999998653 2345566666554433

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.90  E-value=2.6e-09  Score=92.51  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=70.7

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCC-------CeEEEEcCCCC-----ChhHHHhh--------------CCeecCCHHhh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM-----DPQLEKET--------------GAKFEEDLDTM   89 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~l~e~   89 (223)
                      .++|+|||+|.||..+|..|...|       .+|.+|++++.     ..+...+.              ++...++++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            468999999999999999998888       89999999764     22222211              22334678888


Q ss_pred             cccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus        90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      ++++|+|++++|. .....++ ++....+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            8999999999994 2333333 455567888999999988754

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.89  E-value=4.9e-09  Score=90.46  Aligned_cols=90  Identities=20%  Similarity=0.325  Sum_probs=67.9

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC-----------CeecCCHHhhcccCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-----------AKFEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g-----------~~~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      --.+|+|||+|.||..+|..|...|.+|.+|+|++...+...+.+           +...+++++ ++.+|+|++++|. 
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-   90 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-   90 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-
Confidence            457899999999999999999999999999999753333333333           355567888 8899999999993 


Q ss_pred             hhhhhcccHHHHhcCC-CCcEEEEcCCCC
Q 027408          104 EKTRGMFDKDRIAKMK-KGVLIVNNARGA  131 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk-~ga~ivn~srg~  131 (223)
                      ..+     ++.+..++ +++++|+++.|-
T Consensus        91 ~~~-----~~v~~~l~~~~~~vv~~~nGi  114 (335)
T 1z82_A           91 QYI-----REHLLRLPVKPSMVLNLSKGI  114 (335)
T ss_dssp             GGH-----HHHHTTCSSCCSEEEECCCCC
T ss_pred             HHH-----HHHHHHhCcCCCEEEEEeCCC
Confidence            333     44444455 788999999773

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.89  E-value=2.6e-09  Score=93.65  Aligned_cols=94  Identities=11%  Similarity=0.167  Sum_probs=69.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC-------CeEEEEcCCCC-----ChhHHHhh--------------CCeecCCHHhhc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM-----DPQLEKET--------------GAKFEEDLDTML   90 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~l~e~l   90 (223)
                      ++|+|||+|.||..+|..|...|       .+|.+|+|++.     ..+...+.              ++...+++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998878       89999999764     22222221              234456788888


Q ss_pred             ccCCEEEEcCCCChhhhhcccHHHHh----cCCCCcEEEEcCCCCc
Q 027408           91 PKCDIVVVNTPLTEKTRGMFDKDRIA----KMKKGVLIVNNARGAI  132 (223)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~----~mk~ga~ivn~srg~~  132 (223)
                      +++|+|++++|. .....++ ++...    .+++++++|+++.|-.
T Consensus       102 ~~aDvVilav~~-~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVL-ASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHH-HHHTC---CCCCTTCEEEECCCSCE
T ss_pred             cCCCEEEEcCCH-HHHHHHH-HHHhhhhhccCCCCCEEEEeCCccc
Confidence            999999999993 3333332 34445    6788999999988733

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.87  E-value=1.1e-09  Score=95.48  Aligned_cols=94  Identities=20%  Similarity=0.269  Sum_probs=69.7

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh--------------CCeecCCHHhhcccCCEEEEcCCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      +|+|||+|.||..+|..|...|++|.+|||++...+...+.              ++....+++++++++|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            89999999999999999999999999999975322322222              233446788889999999999993 


Q ss_pred             hhhhhcccHH----HHhcCCC-CcEEEEcCCCCcc
Q 027408          104 EKTRGMFDKD----RIAKMKK-GVLIVNNARGAIM  133 (223)
Q Consensus       104 ~~t~~~i~~~----~~~~mk~-ga~ivn~srg~~v  133 (223)
                      .....++ .+    ....+++ ++++|+++.|-..
T Consensus        96 ~~~~~v~-~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFF-EKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHH-HHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHH-HHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            3333333 33    4556777 8999999877443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.85  E-value=1.6e-08  Score=95.77  Aligned_cols=117  Identities=12%  Similarity=0.105  Sum_probs=82.0

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhhC-------------CeecCCHHhhcc
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP   91 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~e~l~   91 (223)
                      =++|||||+|.||..+|..+...|++|++||+++...+..           .+.|             +...+++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            4579999999999999999999999999999975322211           0112             2234566 6788


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      +||+|+.++|.+.+.+..+-.+..+.++++++|++.+.+  +....+.+.+. ..-...++..|.
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~-~~~~~ig~hf~~  454 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALK-RPENFVGMHFFN  454 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCS-CGGGEEEEECCS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhc-CccceEEEEccC
Confidence            999999999988776665656777889999999755443  33445555543 222446666554

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.84  E-value=1.9e-08  Score=87.97  Aligned_cols=97  Identities=12%  Similarity=0.152  Sum_probs=73.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-------cCCHHhhcccCCEEEEcCCCCh-
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLTE-  104 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p~~~-  104 (223)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+++...+...+.+...       ..++.+.+.++|+|+.+++... 
T Consensus       164 ~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~  243 (361)
T 1pjc_A          164 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  243 (361)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            47889999999999999999999999999999999764333333332211       1245566778999999987432 


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .+..++.++.++.|+++..++|++-
T Consensus       244 ~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          244 RAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCCeecCHHHHhhCCCCCEEEEEec
Confidence            1334567889999999999999984

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.84  E-value=1.3e-08  Score=83.65  Aligned_cols=99  Identities=21%  Similarity=0.304  Sum_probs=74.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeE-EEEcCCCCChhHHHhhCCeecCCHHhhc-ccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      ++|||||+|.||+.+++.+...|+++ .++|++....    .    .+.++++++ .++|+|++|+|..  .   ..+..
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~----~----~~~~~~~l~~~~~DvVv~~~~~~--~---~~~~~   67 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHE----K----MVRGIDEFLQREMDVAVEAASQQ--A---VKDYA   67 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCT----T----EESSHHHHTTSCCSEEEECSCHH--H---HHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchh----h----hcCCHHHHhcCCCCEEEECCCHH--H---HHHHH
Confidence            47999999999999999998889997 6999875221    1    456899999 6999999999922  2   22334


Q ss_pred             HhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCcc
Q 027408          115 IAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~---~al~~~L~~g~i~  148 (223)
                      ...++.|..+++.+.+..-+.   ..|.+..++....
T Consensus        68 ~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           68 EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence            566778999999988776666   5677776654443

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.83  E-value=3.5e-08  Score=89.09  Aligned_cols=117  Identities=13%  Similarity=0.175  Sum_probs=80.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------hC-----------CeecCCHHhhccc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-----------AKFEEDLDTMLPK   92 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-----------~~~~~~l~e~l~~   92 (223)
                      .-++|+|||+|.||..+|..+...|++|++||+++...+....           .|           ....+++ +.+++
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~  114 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELST  114 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCC
Confidence            3468999999999999999999999999999997532221111           01           1123466 56789


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ||+|+.++|.+.+.+..+-++..+.++++++|++.+.+  +....|.+.+.. .-...++..|
T Consensus       115 aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~--~~~~~la~~~~~-~~~~ig~hf~  174 (463)
T 1zcj_A          115 VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFF  174 (463)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEEC
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--cCHHHHHHHhcC-CcceEEeecC
Confidence            99999999976555555556677788999999874443  344466665532 2344566655

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.79  E-value=4.2e-08  Score=93.10  Aligned_cols=116  Identities=14%  Similarity=0.103  Sum_probs=80.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------hC-------------CeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~e~l~~   92 (223)
                      ++|+|||.|.||..+|..+...|++|++||+++...+....           .|             +...+++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            68999999999999999999999999999997532221100           11             2233456 56889


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      ||+|+.++|.+.+.+..+-.+..+.++++++|++.+.+  +....+.+.+.. .-...++..|.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-p~~~iG~hf~~  452 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKS-QDRIVGAHFFS  452 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSC-TTTEEEEEECS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcC-CCCEEEecCCC
Confidence            99999999977766655556777889999998655443  333455554422 22345666554

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.79  E-value=8.3e-09  Score=93.61  Aligned_cols=107  Identities=10%  Similarity=0.110  Sum_probs=78.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--CCeEEEEcCCCCChhHHHh-------------------hCCeecCCHHhhcccCCE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKE-------------------TGAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~e~l~~aDv   95 (223)
                      ++|+|||+|.||..+|..|...  |++|++||+++...+....                   .++...+++.+.+++||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            6899999999999999999876  7899999987532222111                   123444577788889999


Q ss_pred             EEEcCCCChh--------------hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408           96 VVVNTPLTEK--------------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus        96 Vv~~~p~~~~--------------t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      |++|+|....              ... +.+...+.++++++||+.|.-.+-..+.+.+.+.+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~-~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVES-VSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHH-HHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEecCCccccccccccCCCcHHHHHH-HHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999884321              122 22556678999999999887666566777777876

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.79  E-value=1.4e-08  Score=91.95  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=77.1

Q ss_pred             CCEEEEEcccHHHHHHHHHHccC-CC-eEEEEcCCCC----ChhHHHh---------------------hC-CeecCCHH
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPF-NC-NLLYHDRVKM----DPQLEKE---------------------TG-AKFEEDLD   87 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~-G~-~V~~~d~~~~----~~~~~~~---------------------~g-~~~~~~l~   87 (223)
                      -++|+|||+|.||..+|..|... |+ +|++||+++.    ..+...+                     .+ +...++ .
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~   96 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F   96 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence            36899999999999999999999 99 9999999875    2221111                     12 233344 6


Q ss_pred             hhcccCCEEEEcCCCCh--------hhhhc--ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHH
Q 027408           88 TMLPKCDIVVVNTPLTE--------KTRGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA  141 (223)
Q Consensus        88 e~l~~aDvVv~~~p~~~--------~t~~~--i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~  141 (223)
                      +.+++||+|++|+|...        +...+  ..+...+.+++|+++|+.|.-++-..+.+.+.
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            78899999999999542        22222  23567788999999999998777666667653

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.79  E-value=8.4e-09  Score=86.47  Aligned_cols=92  Identities=18%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh---CC----e-ecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---GA----K-FEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~---g~----~-~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      ++|+|||+|.||..+|..|...|.+|.+|+|++...+.....   +.    . ..++ .+.++++|+|++++|... +..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~~-~~~   78 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAWQ-VSD   78 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGGG-HHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHHh-HHH
Confidence            489999999999999999999999999999976433221111   11    0 1233 466788999999999543 333


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++ ++....+++++++|+++.|-
T Consensus        79 v~-~~l~~~l~~~~~vv~~~~g~  100 (291)
T 1ks9_A           79 AV-KSLASTLPVTTPILLIHNGM  100 (291)
T ss_dssp             HH-HHHHTTSCTTSCEEEECSSS
T ss_pred             HH-HHHHhhCCCCCEEEEecCCC
Confidence            33 45667788899999987653

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.76  E-value=3.9e-08  Score=74.65  Aligned_cols=103  Identities=14%  Similarity=0.190  Sum_probs=77.4

Q ss_pred             CCCCEEEEEcc----cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           34 LEGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        34 l~g~~igIiG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      ++-++|+|||+    |.+|..+++.+...|++|+.+|++.  .+   -.|...+.+++|+....|++++++| .+....+
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~--~~---i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v   85 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNY--DE---IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQV   85 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC--SE---ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCC--Ce---ECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHH
Confidence            56778999999    9999999999999999988888764  11   2477777899999999999999999 3555555


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      + ++..+ .+.++++++.+.    ..+++.+..++..+.
T Consensus        86 ~-~~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           86 A-KEAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             H-HHHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             H-HHHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            4 34444 566677776643    257778877777776

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.74  E-value=6.5e-08  Score=83.28  Aligned_cols=119  Identities=8%  Similarity=-0.037  Sum_probs=87.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------hh--------------CCeecCCHHhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET--------------GAKFEEDLDTM   89 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~--------------g~~~~~~l~e~   89 (223)
                      .-.+|+|||.|.||+.+|..+...|++|..||+++...+...           +.              .+...+++++.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            456899999999999999999999999999998753211100           00              12345688899


Q ss_pred             cccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      +++||+|+-++|.+-+.+.-+-+++-+.++++++|-..+++  +....|.+.+.. .-+..++--|.
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffN  148 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVN  148 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECS
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCC
Confidence            99999999999988888888888888889999998655554  455667666543 44445555443

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.73  E-value=3.5e-08  Score=87.61  Aligned_cols=96  Identities=24%  Similarity=0.320  Sum_probs=76.2

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC------CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK------MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~------~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .-|.||+|+|||+|+-|.+-|..|+..|.+|++--|..      .+.+.+.+.|+... +.+|+++.||+|++.+|+..+
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~~q  111 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDKQH  111 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGGGH
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChhhH
Confidence            45899999999999999999999999999988765521      22345666787765 799999999999999995433


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      .  -+-++....||+|+.+. .|.|-
T Consensus       112 ~--~vy~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          112 S--DVVRTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             H--HHHHHHGGGSCTTCEEE-ESSCH
T ss_pred             H--HHHHHHHhhCCCCCEEE-ecCcc
Confidence            3  33467999999999886 55554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.71  E-value=1.6e-08  Score=84.41  Aligned_cols=106  Identities=20%  Similarity=0.198  Sum_probs=74.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhh-hhc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT-RGM  109 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t-~~~  109 (223)
                      .+.| +++|+|.|.+|++++..|...|. +|.+++|+.... +.++.++.....++.+.++++|+|+.++|..-.. ...
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~  184 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELP  184 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCS
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCC
Confidence            4678 99999999999999999999998 899999975221 1122222223457778889999999999853211 123


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      ++.+.   ++++.+++++.-+   ...-+.++.+.|
T Consensus       185 i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          185 VSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            44333   5689999999888   455555566555

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.70  E-value=4.9e-08  Score=82.11  Aligned_cols=94  Identities=17%  Similarity=0.137  Sum_probs=65.8

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      ++++.|+|.|.+|++++..|...|.+|.+++|+....+...++++... +++++ .++|+||.++|........++.+.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l  195 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPLNKEVL  195 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCCChHHH
Confidence            899999999999999999999999999999998755433326665443 44444 3899999999954322122444422


Q ss_pred             -hcCCCCcEEEEcCCCC
Q 027408          116 -AKMKKGVLIVNNARGA  131 (223)
Q Consensus       116 -~~mk~ga~ivn~srg~  131 (223)
                       +.++++.+++|+...+
T Consensus       196 ~~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          196 KGYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             HHHHHHCSEEEESCCSS
T ss_pred             HhhCCCCCEEEEeCCCC
Confidence             2455666777766554

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.70  E-value=1.2e-08  Score=86.19  Aligned_cols=109  Identities=14%  Similarity=0.155  Sum_probs=72.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHhhCCeecCCHHhhcccCCEEEEcCCCC--hhhh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLT--EKTR  107 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~--~~t~  107 (223)
                      ..+.|+++.|+|.|.+|++++..|...|+ +|.+++|+....+ .+........++++++++++|+||.++|..  +...
T Consensus       113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~  192 (277)
T 3don_A          113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTD  192 (277)
T ss_dssp             TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------C
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCc
Confidence            46889999999999999999999999999 8999999763222 111111112345667788999999999953  2211


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      ..++   .+.++++.+++|+.-.+.. . .+++..++.
T Consensus       193 ~~l~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~  225 (277)
T 3don_A          193 SVIS---LNRLASHTLVSDIVYNPYK-T-PILIEAEQR  225 (277)
T ss_dssp             CSSC---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHT
T ss_pred             CCCC---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHC
Confidence            1122   3567888899998766443 2 344444443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.68  E-value=2e-08  Score=78.97  Aligned_cols=95  Identities=16%  Similarity=0.158  Sum_probs=67.0

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhhCCeec----CC---HHhh--cccCCEEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE----ED---LDTM--LPKCDIVVVNTP  101 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~----~~---l~e~--l~~aDvVv~~~p  101 (223)
                      .++.+++|+|+|+|.+|+.+|+.|+.. |++|+++|+++...+.....|+...    .+   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            357788999999999999999999998 9999999997643344444565322    22   3444  678999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ..+.+..+  ...++.+.+...++..+
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          115 HHQGNQTA--LEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             SHHHHHHH--HHHHHHTTCCSEEEEEE
T ss_pred             ChHHHHHH--HHHHHHHCCCCEEEEEE
Confidence            65444333  24556666666666543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.68  E-value=1.8e-07  Score=80.17  Aligned_cols=107  Identities=15%  Similarity=0.062  Sum_probs=77.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC---------------eecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA---------------KFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~---------------~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.  .+..++.|+               ....+++++.+.+|+|++++|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            689999999999999999999999999999975  233333332               123466777668999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      .... ..+ -++....++++++||.+..|= -.++.+.+.+...++.
T Consensus        81 ~~~~-~~~-l~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           81 VVEG-ADR-VGLLRDAVAPDTGIVLISNGI-DIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             CCTT-CCH-HHHHTTSCCTTCEEEEECSSS-SCSHHHHHHSTTSCEE
T ss_pred             CCCh-HHH-HHHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCCCCcEE
Confidence            5442 222 255666788899999888763 3346677777665554

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.67  E-value=5.9e-08  Score=86.79  Aligned_cols=110  Identities=16%  Similarity=0.137  Sum_probs=75.8

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-ecCCHHhh---------------cccCCEEE
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTM---------------LPKCDIVV   97 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~e~---------------l~~aDvVv   97 (223)
                      -.|+++.|||+|.||..+|..|...|++|++||+++...+........ +...++++               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            478999999999999999999999999999999976433332221111 11122222               45799999


Q ss_pred             EcCCCChhh--------hhc--ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408           98 VNTPLTEKT--------RGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus        98 ~~~p~~~~t--------~~~--i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                      +|+|.....        ..+  ..+...+.+++|+++|+.|.-++-..+.+.+.+.
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~  144 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVI  144 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHH
Confidence            999954321        112  1356778899999999999888777777777653

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.67  E-value=1.1e-07  Score=81.04  Aligned_cols=111  Identities=15%  Similarity=0.254  Sum_probs=76.2

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhhCC---eec--CCHHhhcccCCEEEEcCCCCh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETGA---KFE--EDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~g~---~~~--~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      .++.+++++|+|.|.+|+.++..|...|+ +|.+++|+... .+.++.++.   ...  +++.+.+.++|+||.++|...
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence            35789999999999999999999999998 89999997522 233444332   211  346677889999999999553


Q ss_pred             hhh--h-cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 027408          105 KTR--G-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (223)
Q Consensus       105 ~t~--~-~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i  147 (223)
                      ...  . .++   .+.++++.+++|++-.+...  .|.+..++...
T Consensus       217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~  257 (297)
T 2egg_A          217 HPRVEVQPLS---LERLRPGVIVSDIIYNPLET--KWLKEAKARGA  257 (297)
T ss_dssp             SSCCSCCSSC---CTTCCTTCEEEECCCSSSSC--HHHHHHHHTTC
T ss_pred             CCCCCCCCCC---HHHcCCCCEEEEcCCCCCCC--HHHHHHHHCcC
Confidence            211  0 122   24577889999998754332  35555555443

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.66  E-value=5.3e-08  Score=80.14  Aligned_cols=71  Identities=11%  Similarity=0.160  Sum_probs=57.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      .-++|+|||+|.||.++|+.|+..|++|.+|++.                  ++ +++||  ++++|.. ....++ .+.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl-~~l   61 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV-EKL   61 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH-HHH
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH-HHH
Confidence            3468999999999999999999999999999982                  12 56789  7889965 344443 566


Q ss_pred             HhcCCCCcEEEEcC
Q 027408          115 IAKMKKGVLIVNNA  128 (223)
Q Consensus       115 ~~~mk~ga~ivn~s  128 (223)
                      ...+++++++++++
T Consensus        62 ~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           62 SAFARRGQMFLHTS   75 (232)
T ss_dssp             HTTCCTTCEEEECC
T ss_pred             HHhcCCCCEEEEEC
Confidence            67789999999985

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.65  E-value=9.3e-09  Score=86.49  Aligned_cols=87  Identities=17%  Similarity=0.167  Sum_probs=58.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeE-EEEcCCCCChh-HHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~-~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      ++|||||+|.||+.+++.+... ++| .+||+++...+ ..+.++. ...+++++++++|+|++++|... .     .+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~-----~~v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-I-----KTV   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-H-----HHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-H-----HHH
Confidence            4799999999999999999877 888 58998753322 2234565 55678888899999999999432 1     344


Q ss_pred             HhcC-CCCcEEEEcCCCC
Q 027408          115 IAKM-KKGVLIVNNARGA  131 (223)
Q Consensus       115 ~~~m-k~ga~ivn~srg~  131 (223)
                      +..+ +++++|||++-+-
T Consensus        75 ~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             HTTTCCSSCCEEECCSSS
T ss_pred             HHHhccCCCEEEECCCCC
Confidence            4444 5789999998553

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.63  E-value=1.3e-07  Score=72.49  Aligned_cols=98  Identities=15%  Similarity=0.109  Sum_probs=64.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hhCCeec----CC---HHhh-cccCCEEEEcCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE----ED---LDTM-LPKCDIVVVNTPL  102 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~----~~---l~e~-l~~aDvVv~~~p~  102 (223)
                      ....+++|.|+|+|.+|+.+++.|+..|.+|+++++++...+... ..+...+    .+   +.+. +.++|+|++++|.
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~   94 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTND   94 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence            457889999999999999999999999999999999764333333 3444321    12   2233 5689999999985


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ...+..  -....+.+.+...++-..++.
T Consensus        95 ~~~~~~--~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           95 DSTNFF--ISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             HHHHHH--HHHHHHHTSCCSEEEEECSSG
T ss_pred             cHHHHH--HHHHHHHHCCCCeEEEEECCH
Confidence            433322  234445445555565555544

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.63  E-value=2.4e-07  Score=79.15  Aligned_cols=108  Identities=16%  Similarity=0.164  Sum_probs=75.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe--------------ecCCHHhhcccCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ++|+|||.|.||..+|..|...|.+|.+|+|+.  .+..++.|+.              ..++.++ +..+|+|++++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~   79 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT   79 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC
Confidence            589999999999999999999999999999965  2333333321              1245554 5789999999994


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEE
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a  150 (223)
                      .. +.. +-++....++++++||.+..|= -.++.+.+.+...++.+.
T Consensus        80 ~~-~~~-~l~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           80 FA-NSR-YEELIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIGG  124 (312)
T ss_dssp             GG-GGG-HHHHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEEE
T ss_pred             CC-cHH-HHHHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEE
Confidence            33 222 2355666788899999988762 235567777765555443

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.62  E-value=1.8e-08  Score=85.61  Aligned_cols=105  Identities=11%  Similarity=0.082  Sum_probs=71.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-----C-CeEEEEcCCCCChhHHHh-hCCeecC-------------CHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-----N-CNLLYHDRVKMDPQLEKE-TGAKFEE-------------DLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-----G-~~V~~~d~~~~~~~~~~~-~g~~~~~-------------~l~e~l~~aDvV   96 (223)
                      ++|+|||+|.||..+|..|...     | .+|.+|+| +...+...+ .|+....             +..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            5899999999999999999887     8 99999998 422333333 4543221             233456789999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCH-HHHHHHHHhCC
Q 027408           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT-QAVVDACSSGH  146 (223)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~-~al~~~L~~g~  146 (223)
                      ++++|... +..++ ++....++++++||++..|  ++. +.+.+.+...+
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCTTT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCCCc
Confidence            99999544 23332 4455667788999998776  343 45555554433

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.62  E-value=4.3e-08  Score=74.97  Aligned_cols=104  Identities=16%  Similarity=0.139  Sum_probs=77.4

Q ss_pred             CCEEEEEcc----cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           36 GKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        36 g~~igIiG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      -++|+|||+    |.+|..+++.+...|++|+.+|++....+   ..|...+.+++|+....|++++++|. +....++ 
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~---i~G~~~~~sl~el~~~~Dlvii~vp~-~~v~~v~-   87 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT---LLGQQGYATLADVPEKVDMVDVFRNS-EAAWGVA-   87 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE---ETTEECCSSTTTCSSCCSEEECCSCS-THHHHHH-
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc---cCCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH-
Confidence            578999999    89999999999999999888888541011   24777777899998899999999994 5555554 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccE
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~  149 (223)
                      ++..+ .+.+.++++.+  ..  ++++.+.+++..++.
T Consensus        88 ~~~~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~~  120 (145)
T 2duw_A           88 QEAIA-IGAKTLWLQLG--VI--NEQAAVLAREAGLSV  120 (145)
T ss_dssp             HHHHH-HTCCEEECCTT--CC--CHHHHHHHHTTTCEE
T ss_pred             HHHHH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCEE
Confidence            33444 45567777653  22  678888888877763

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.61  E-value=3e-07  Score=78.97  Aligned_cols=89  Identities=21%  Similarity=0.358  Sum_probs=69.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHHHh----hCC--eecCCHHhhcccCCEEEEcCCCChhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~----~g~--~~~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      ..++++|||.|.+|+.+++.+.. ++ .+|.+|||+ +..+.+++    +|+  ... ++++++++||+|++|+|..   
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---  194 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---  194 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---
Confidence            57899999999999999999875 44 479999998 66555443    355  345 8999999999999999954   


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ..++.   .+.+++|++|++++...
T Consensus       195 ~pvl~---~~~l~~G~~V~~vGs~~  216 (313)
T 3hdj_A          195 TPLFA---GQALRAGAFVGAIGSSL  216 (313)
T ss_dssp             SCSSC---GGGCCTTCEEEECCCSS
T ss_pred             CcccC---HHHcCCCcEEEECCCCC
Confidence            34454   24689999999998643

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.61  E-value=5.9e-08  Score=83.75  Aligned_cols=91  Identities=20%  Similarity=0.195  Sum_probs=65.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-------------ecCCHHhhcccCCEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------------~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      .++|+|||+|.||..+|..|...|.+|.+++|.. ..+...+.|..             ..+++++ +..+|+|++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGA-TLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH-HHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH-HHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            4689999999999999999999999999999852 22333333432             2346766 4889999999993


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                       ..+..++ ++....++++++||.+..|
T Consensus        81 -~~~~~~~-~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 -PALESVA-AGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             -HHHHHHH-GGGSSSCCTTCEEEECCSS
T ss_pred             -hhHHHHH-HHHHhhCCCCCEEEEECCC
Confidence             2333222 2333456789999999988

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.59  E-value=1.4e-07  Score=80.93  Aligned_cols=106  Identities=16%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC-------------eecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-------------KFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-------------~~~~~l~e~l~~aDvVv~~   99 (223)
                      ....++|+|||.|.||..+|..|...|.+|.+| +++...+...+.|.             ...+++++ +..+|+|+++
T Consensus        16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vila   93 (318)
T 3hwr_A           16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFC   93 (318)
T ss_dssp             ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEEC
T ss_pred             hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEE
Confidence            356789999999999999999999999999999 65422233333332             22345544 5789999999


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                      +|.. .+..++ ++....++++++||++..|=- .++.+.+.+.
T Consensus        94 vk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~-~~~~l~~~~~  134 (318)
T 3hwr_A           94 VKST-DTQSAA-LAMKPALAKSALVLSLQNGVE-NADTLRSLLE  134 (318)
T ss_dssp             CCGG-GHHHHH-HHHTTTSCTTCEEEEECSSSS-HHHHHHHHCC
T ss_pred             cccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCC-cHHHHHHHcC
Confidence            9944 333332 455567788999999877632 2345555554

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.58  E-value=1.6e-07  Score=79.14  Aligned_cols=82  Identities=20%  Similarity=0.271  Sum_probs=68.2

Q ss_pred             ccCCCCCEEEEEcccHH-HHHHHHHHccC--CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhh
Q 027408           31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~i-G~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      +.++.|+++.|||.|.| |+.+|+.|...  |++|++++++.              .++.+.+++||+|+.+++.    .
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~----p  214 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGV----A  214 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCC----T
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCC----C
Confidence            45899999999999985 99999999998  89999998643              4789999999999999982    2


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCcc
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~v  133 (223)
                      +++..+.   +|+|+++||++...+.
T Consensus       215 ~~I~~~~---vk~GavVIDVgi~r~~  237 (281)
T 2c2x_A          215 HLLTADM---VRPGAAVIDVGVSRTD  237 (281)
T ss_dssp             TCBCGGG---SCTTCEEEECCEEEET
T ss_pred             cccCHHH---cCCCcEEEEccCCCCC
Confidence            3566555   5899999999976643

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.57  E-value=1.1e-07  Score=80.35  Aligned_cols=81  Identities=17%  Similarity=0.352  Sum_probs=68.1

Q ss_pred             ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|++++++.              .++.+.+++||+|+.+++.    .++
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~l  215 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGK----PGF  215 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCC----TTC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCC----cCc
Confidence            4589999999999997 59999999999999999998543              4788999999999999982    235


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      +..+.   +|+|+++||++...+
T Consensus       216 I~~~~---vk~GavVIDVgi~r~  235 (288)
T 1b0a_A          216 IPGDW---IKEGAIVIDVGINRL  235 (288)
T ss_dssp             BCTTT---SCTTCEEEECCCEEC
T ss_pred             CCHHH---cCCCcEEEEccCCcc
Confidence            66555   589999999997664

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.57  E-value=1.4e-07  Score=79.55  Aligned_cols=80  Identities=23%  Similarity=0.322  Sum_probs=67.0

Q ss_pred             ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.|+++.|||.|. +|+.+|..|...|+.|++++++.              .++++.+++||+|+.+++.    .++
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~~  217 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGK----PNF  217 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhcccCCEEEECCCC----CCC
Confidence            4579999999999988 69999999999999999998642              3788999999999999982    334


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +..+   .+|+|+++||++...
T Consensus       218 I~~~---~vk~GavVIDvgi~~  236 (285)
T 3l07_A          218 ITAD---MVKEGAVVIDVGINH  236 (285)
T ss_dssp             BCGG---GSCTTCEEEECCCEE
T ss_pred             CCHH---HcCCCcEEEEecccC
Confidence            6554   459999999998765

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.57  E-value=1.9e-07  Score=79.33  Aligned_cols=82  Identities=21%  Similarity=0.270  Sum_probs=67.8

Q ss_pred             ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|++++++.              .++.+.+++||+||.+++.    .++
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~~  221 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQ----PEM  221 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc--------------ccHHHHhccCCEEEECCCC----ccc
Confidence            4589999999999996 69999999999999999998532              4789999999999999983    235


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCcc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~v  133 (223)
                      +..+.   +|+|+++||++...+-
T Consensus       222 I~~~~---vk~GavVIDVgi~~~~  242 (301)
T 1a4i_A          222 VKGEW---IKPGAIVIDCGINYVP  242 (301)
T ss_dssp             BCGGG---SCTTCEEEECCCBC--
T ss_pred             CCHHH---cCCCcEEEEccCCCcc
Confidence            66555   5899999999987643

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.57  E-value=1.3e-07  Score=79.77  Aligned_cols=81  Identities=21%  Similarity=0.362  Sum_probs=67.9

Q ss_pred             ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.|+++.|||.|. +|+.+|..|...|+.|++++++.              .++++.+++||+|+.+++.    .++
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~----p~~  216 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGC----VNL  216 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSC----TTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCC----CCc
Confidence            4689999999999988 69999999999999999998642              3788999999999999982    335


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      +..+   .+|+|+++||++.-.+
T Consensus       217 I~~~---~vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          217 LRSD---MVKEGVIVVDVGINRL  236 (285)
T ss_dssp             BCGG---GSCTTEEEEECCCEEC
T ss_pred             CCHH---HcCCCeEEEEeccCcc
Confidence            6554   4599999999997664

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.56  E-value=1.7e-07  Score=79.05  Aligned_cols=81  Identities=22%  Similarity=0.388  Sum_probs=67.5

Q ss_pred             ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      +.++.|+++.|||.|. +|+.+|..|...|+.|+++++..              .++++.+++||+|+.+++.    .++
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~----p~~  217 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGK----PGL  217 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCC----CCC
Confidence            4689999999999987 79999999999999999997632              3688999999999999982    335


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      +..+.   +|+|+++||++.-.+
T Consensus       218 I~~~~---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          218 VKGEW---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             BCGGG---SCTTCEEEECCSCSS
T ss_pred             CCHHH---cCCCeEEEEeccccc
Confidence            65544   599999999987654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.55  E-value=9.5e-08  Score=68.96  Aligned_cols=89  Identities=18%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCee----c---CCHHhhcccCCEEEEcCCCChhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKF----E---EDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~----~---~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      .+++|+|+|.|.||+.+++.|...| .+|+++++++...+.....++..    .   .++.++++++|+|+.++|.... 
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~-   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT-   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH-
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh-
Confidence            4679999999999999999999999 89999999753333333334321    1   3455678899999999983221 


Q ss_pred             hhcccHHHHhcCCCCcEEEEcC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ..+    .-...+.|...++.+
T Consensus        83 ~~~----~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PII----AKAAKAAGAHYFDLT  100 (118)
T ss_dssp             HHH----HHHHHHTTCEEECCC
T ss_pred             HHH----HHHHHHhCCCEEEec
Confidence            111    111234566677665

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.55  E-value=1.3e-07  Score=79.40  Aligned_cols=77  Identities=19%  Similarity=0.270  Sum_probs=65.4

Q ss_pred             CCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           34 LEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        34 l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      +.|+++.|||.|. +|+.+|..|...|++|++++++.              .++++.+++||+|+.+++.    .+++..
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t--------------~~L~~~~~~ADIVI~Avg~----p~~I~~  209 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT--------------KDIGSMTRSSKIVVVAVGR----PGFLNR  209 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHHSSEEEECSSC----TTCBCG
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc--------------ccHHHhhccCCEEEECCCC----CccccH
Confidence            9999999999986 89999999999999999998632              4788999999999999983    235655


Q ss_pred             HHHhcCCCCcEEEEcCCCC
Q 027408          113 DRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~  131 (223)
                      +.   +|+|+++||++.-.
T Consensus       210 ~~---vk~GavVIDvgi~~  225 (276)
T 3ngx_A          210 EM---VTPGSVVIDVGINY  225 (276)
T ss_dssp             GG---CCTTCEEEECCCEE
T ss_pred             hh---ccCCcEEEEeccCc
Confidence            44   59999999998755

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.54  E-value=1.6e-07  Score=81.80  Aligned_cols=93  Identities=10%  Similarity=0.150  Sum_probs=68.9

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHc-cCC-CeEEEEcCCCCCh-hHHHhh----C--CeecCCHHhhcccCCEEEEcCCCCh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLK-PFN-CNLLYHDRVKMDP-QLEKET----G--AKFEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~-~~G-~~V~~~d~~~~~~-~~~~~~----g--~~~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ...++|+|||+|.+|+.+++.+. ..+ .+|.+|||++... +..+.+    +  +..+++++++++++|+|++|+|...
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~  206 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA  206 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC
Confidence            36789999999999999998874 344 5799999986332 333333    5  3456789999999999999999652


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                       ...++..   +.+++|+.+++++..
T Consensus       207 -~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 -YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             -EEEEECG---GGCCTTCEEEECSCC
T ss_pred             -CCceecH---HHcCCCCEEEECCCC
Confidence             2334442   568999999999863

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.54  E-value=1.2e-07  Score=80.62  Aligned_cols=81  Identities=19%  Similarity=0.266  Sum_probs=66.4

Q ss_pred             ccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHH--hhcccCCEEEEcCCCChhhh
Q 027408           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD--TMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~--e~l~~aDvVv~~~p~~~~t~  107 (223)
                      +.++.|+++.|||.|. +|+.+|..|...|+.|++++++..              +++  +.+++||+|+.+++.    .
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~----p  221 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQ----P  221 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCC----T
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCC----C
Confidence            4679999999999988 799999999999999999987431              345  889999999999983    3


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCc
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      +++..+.   +|+|+++||++...+
T Consensus       222 ~~I~~~~---vk~GavVIDvgi~~~  243 (300)
T 4a26_A          222 GYVKGEW---IKEGAAVVDVGTTPV  243 (300)
T ss_dssp             TCBCGGG---SCTTCEEEECCCEEE
T ss_pred             CCCcHHh---cCCCcEEEEEeccCC
Confidence            3565543   699999999986543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.53  E-value=5e-07  Score=67.07  Aligned_cols=90  Identities=18%  Similarity=0.105  Sum_probs=59.7

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hhCCee----cCCHHh----hcccCCEEEEcCCCChhh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKF----EEDLDT----MLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~----~~~l~e----~l~~aDvVv~~~p~~~~t  106 (223)
                      +++|+|+|+|.+|+.+|+.|...|.+|.++|+++...+... ..++..    ..+.+.    .+.++|+|++++|.....
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            57899999999999999999999999999998653222222 235432    122322    257899999999854332


Q ss_pred             hhcccHHHHhcCCCCcEEEEc
Q 027408          107 RGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      .  .-....+.++++.+++-+
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEEC
T ss_pred             H--HHHHHHHHcCCCEEEEEe
Confidence            2  223455667777666543

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.52  E-value=2.6e-07  Score=78.50  Aligned_cols=108  Identities=11%  Similarity=0.218  Sum_probs=72.4

Q ss_pred             CCEEEEEcccHHHHH-HHHHHcc-CCCeEE-EEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           36 GKTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        36 g~~igIiG~G~iG~~-iA~~l~~-~G~~V~-~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      -.+|||||+|.||+. +++.++. -+.++. ++|+++.. .+.++.+++..++++++++.++|+|++++|.....     
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~-----   80 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHY-----   80 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHH-----
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHH-----
Confidence            468999999999996 8888876 477866 78987532 23455678776889999999999999999933222     


Q ss_pred             HHHHhcCCCCcEEEEc--CCCCccCHHHHHHHHHhCCcc
Q 027408          112 KDRIAKMKKGVLIVNN--ARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~--srg~~vd~~al~~~L~~g~i~  148 (223)
                      +-....++.|..++.-  ..-.+-+.++|.++.++..+.
T Consensus        81 ~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~  119 (308)
T 3uuw_A           81 EIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLN  119 (308)
T ss_dssp             HHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence            2233445556555421  222333455567766665544

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.51  E-value=3.9e-08  Score=84.56  Aligned_cols=94  Identities=18%  Similarity=0.172  Sum_probs=68.4

Q ss_pred             ccCCCCCEEEEEcccHH-HHHHHHHHccCCCeEEEEcCCCC-ChhHHHhhCC--e-e-----c--CCHHhhcccCCEEEE
Q 027408           31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGA--K-F-----E--EDLDTMLPKCDIVVV   98 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~i-G~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~--~-~-----~--~~l~e~l~~aDvVv~   98 (223)
                      +.++.|+++.|||.|.| |+.+|+.|...|++|+++||+.. ..+.+..++.  . .     .  .++++.+++||+|+.
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs  251 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT  251 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence            45799999999999975 99999999999999999998621 0011111111  1 1     1  478899999999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      +++..   ..++..+.   +|+|+++||++..
T Consensus       252 Atg~p---~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          252 GVPSE---NYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             CCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred             CCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence            99831   22365555   5899999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.49  E-value=2.8e-07  Score=69.52  Aligned_cols=89  Identities=16%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----CCHH---hh-cccCCEEEEcCCCChhhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLD---TM-LPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~---e~-l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+|.|+|+|.+|+.+|+.|+..|++|+++|+++...+.....|+..+    .+.+   ++ +.++|+|++++|....+..
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~   87 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE   87 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence            46999999999999999999999999999997644444445565422    2222   21 4689999999996655543


Q ss_pred             cccHHHHhcCCCCcEEEEc
Q 027408          109 MFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~  127 (223)
                      +  ....+.+.++..+|-.
T Consensus        88 ~--~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           88 I--VASARAKNPDIEIIAR  104 (140)
T ss_dssp             H--HHHHHHHCSSSEEEEE
T ss_pred             H--HHHHHHHCCCCeEEEE
Confidence            3  2345555566555543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.46  E-value=4e-07  Score=78.93  Aligned_cols=68  Identities=15%  Similarity=0.301  Sum_probs=54.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCC-hhHHHhhCCeecCCHHhhc--ccCCEEEEcCCCCh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTML--PKCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~-~~~~~~~g~~~~~~l~e~l--~~aDvVv~~~p~~~  104 (223)
                      .+|||||+|.||+.+++.++.. ++++. ++|+++.. .+.++.+++..++++++++  .+.|+|++++|...
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~   78 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDK   78 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTS
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHH
Confidence            5899999999999999999877 78855 78987532 2344567887788999999  66999999999543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.45  E-value=4.9e-07  Score=77.58  Aligned_cols=106  Identities=19%  Similarity=0.234  Sum_probs=69.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCC-hhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~-~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .+|||||+|.||+.+++.+... ++++. ++|+++.. .+.++.+++. +++++++++  ++|+|++++|.....     
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~-----   77 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHA-----   77 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHH-----
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHH-----
Confidence            4899999999999999999875 77866 78987532 3345567887 789999997  799999999943322     


Q ss_pred             HHHHhcCCCCcEEEEcC--CCCccCHHHHHHHHHhCCcc
Q 027408          112 KDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~s--rg~~vd~~al~~~L~~g~i~  148 (223)
                      +.....++.|..++.--  .-..-+.+.|.++.++..+.
T Consensus        78 ~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (331)
T 4hkt_A           78 DLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAK  116 (331)
T ss_dssp             HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCe
Confidence            22233344454444321  12223344455555555444

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.44  E-value=3.6e-07  Score=80.61  Aligned_cols=89  Identities=13%  Similarity=0.080  Sum_probs=62.4

Q ss_pred             CEEEEEcccHHHHHHHHHHcc-CCCeEEEEc---CCCCChhH-HHhhC------------C-------eecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHD---RVKMDPQL-EKETG------------A-------KFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~-~G~~V~~~d---~~~~~~~~-~~~~g------------~-------~~~~~l~e~l~~   92 (223)
                      ++|+|||.|.||..+|..|.. .|.+|.+|+   +++...+. .+..+            .       ...++++++++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            589999999999999999977 599999999   43211111 12111            1       133578888899


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      +|+|++++|... ...+ -++....++++++|++.
T Consensus        83 aD~Vilav~~~~-~~~v-~~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFA-HEGY-FQAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGG-HHHH-HHHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHH-HHHH-HHHHHhhCCCCcEEEEc
Confidence            999999999433 2222 24555667889999985

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.43  E-value=5.1e-07  Score=77.91  Aligned_cols=67  Identities=21%  Similarity=0.362  Sum_probs=54.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCC-hhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~-~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~  103 (223)
                      .+|||||+|.||+.+++.++.. ++++. ++|+++.. .+.++.++...+.++++++.  ++|+|++++|..
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~   76 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTS   76 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCch
Confidence            4899999999999999999876 67765 78887532 23355667777889999998  899999999943

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.42  E-value=3.3e-07  Score=68.28  Aligned_cols=96  Identities=13%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee----cCCHH---hh-cccCCEEEEcCCCCh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EEDLD---TM-LPKCDIVVVNTPLTE  104 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~l~---e~-l~~aDvVv~~~p~~~  104 (223)
                      .+.+++|.|+|+|.+|+.+++.|...|++|+++|+++...+.....+...    ..+.+   ++ +.++|+|+.+++...
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANI   82 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCH
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCch
Confidence            35678899999999999999999999999999998642222222223321    12222   32 568999999998642


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      +.. ..-....+.+.+. .++..+.+
T Consensus        83 ~~~-~~~~~~~~~~~~~-~ii~~~~~  106 (144)
T 2hmt_A           83 QAS-TLTTLLLKELDIP-NIWVKAQN  106 (144)
T ss_dssp             HHH-HHHHHHHHHTTCS-EEEEECCS
T ss_pred             HHH-HHHHHHHHHcCCC-eEEEEeCC
Confidence            221 1223444556665 45544443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.42  E-value=7.1e-07  Score=76.83  Aligned_cols=87  Identities=18%  Similarity=0.327  Sum_probs=65.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-CC-CeEEEEcCCCCCh-hHHHhh-----CCeecCCHHhhcccCCEEEEcCCCChhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDP-QLEKET-----GAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~-~~~~~~-----g~~~~~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      ..++++|||+|.+|+.+++.+.. .+ .+|.+|||++... +.++.+     .+. +.++++++ ++|+|++|+|...  
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~--  199 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK--  199 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS--
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC--
Confidence            57899999999999999998875 44 5699999986332 233332     244 67899999 9999999999542  


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       .++..   +.+++|+.+++++.
T Consensus       200 -pv~~~---~~l~~G~~V~~ig~  218 (322)
T 1omo_A          200 -PVVKA---EWVEEGTHINAIGA  218 (322)
T ss_dssp             -CCBCG---GGCCTTCEEEECSC
T ss_pred             -ceecH---HHcCCCeEEEECCC
Confidence             34432   56899999999953

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.42  E-value=4.1e-07  Score=78.89  Aligned_cols=67  Identities=30%  Similarity=0.422  Sum_probs=54.4

Q ss_pred             CCEEEEEcccHHHHHHHHHHccC--CCeEE-EEcCCCCC-hhHHHhhCCeecCCHHhhcc--cCCEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~--G~~V~-~~d~~~~~-~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      -.+|||||+|.||+.+++.++..  ++++. ++|+++.. .+.++.+++..+++++++++  ++|+|++|+|.
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   85 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPS   85 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCG
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCc
Confidence            35899999999999999999876  77855 88987532 23455678887889999996  79999999993

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.41  E-value=5.3e-07  Score=78.51  Aligned_cols=66  Identities=23%  Similarity=0.316  Sum_probs=54.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      .+|||||+|.||+..++.++.. ++++. ++|+++...+.++..++..++++++++.  +.|+|++|+|.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~   75 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPN   75 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence            5899999999999999999876 77865 6788764444556678887889999997  78999999994

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.40  E-value=1.3e-06  Score=74.56  Aligned_cols=107  Identities=17%  Similarity=0.283  Sum_probs=72.2

Q ss_pred             CEEEEEcccHHHHH-HHHHHcc-CCCeEE-EEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~-~G~~V~-~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      .+|||||+|.||+. +++.+.. -++++. ++|+++... +.++.+++..+++++++..++|+|++++|.....     +
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~-----~   80 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHF-----D   80 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHH-----H
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHH-----H
Confidence            58999999999997 8888865 467765 889887444 3455567776778888767899999999943322     2


Q ss_pred             HHHhcCCCCcE-EEEc-CCCCccCHHHHHHHHHhCCcc
Q 027408          113 DRIAKMKKGVL-IVNN-ARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       113 ~~~~~mk~ga~-ivn~-srg~~vd~~al~~~L~~g~i~  148 (223)
                      .....++.|.. ++.- ....+-+.+.|.++.++..+.
T Consensus        81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            33344556664 4432 222334555677777776655

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.38  E-value=3.4e-07  Score=77.47  Aligned_cols=96  Identities=16%  Similarity=0.190  Sum_probs=64.6

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhhC----CeecCCHHhhcccCCEEEEcCCCCh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETG----AKFEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~g----~~~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|.+++|+... .+.++.++    +.. .+++++..++|+||.++|...
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~-~~~~~l~~~aDiIInaTp~gm  199 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKA-QAFEQLKQSYDVIINSTSASL  199 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGCCSCEEEEEECSCCCC
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeE-eeHHHhcCCCCEEEEcCcCCC
Confidence            456899999999999999999999999996 89999997532 22333332    222 256666688999999999543


Q ss_pred             hhh-hcccHHHHhcCCCCcEEEEcCCC
Q 027408          105 KTR-GMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       105 ~t~-~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      ... ..+.   .+.++++.+++|+.-.
T Consensus       200 ~~~~~~l~---~~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          200 DGELPAID---PVIFSSRSVCYDMMYG  223 (281)
T ss_dssp             ----CSCC---GGGEEEEEEEEESCCC
T ss_pred             CCCCCCCC---HHHhCcCCEEEEecCC
Confidence            211 1122   1334566666666543

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.37  E-value=7.2e-07  Score=76.43  Aligned_cols=105  Identities=10%  Similarity=0.126  Sum_probs=68.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-----Hh-------hCCeecCCHHhhcccCCEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-----KE-------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-----~~-------~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      .++|+|||.|.||..+|..+...|+ +|..||+++...+..     ..       ..+....++ +.+++||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999988888 999999976332221     00       112333566 678999999999831


Q ss_pred             Ch-----------hh---hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q 027408          103 TE-----------KT---RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (223)
Q Consensus       103 ~~-----------~t---~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L  142 (223)
                      ..           .+   ..-+.++.-+. .+++++++++.+.-+....+.+..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~-~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEeCChHHHHHHHHHHhh
Confidence            11           11   11122233333 468999999876555455555544

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.37  E-value=2.6e-06  Score=74.72  Aligned_cols=97  Identities=22%  Similarity=0.278  Sum_probs=77.1

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC----CCC---------hhHHHhhCC-eecCCHHhhcccCCE
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV----KMD---------PQLEKETGA-KFEEDLDTMLPKCDI   95 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~----~~~---------~~~~~~~g~-~~~~~l~e~l~~aDv   95 (223)
                      +..+.+.+|.|+|.|.+|..+|+.+...|. +|+++|++    ...         ...+++.+. ....+++|.++++|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            447899999999999999999999999999 79999997    322         112222221 124579999999999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      ++-+..     .+++.++.++.|+++.+|+.+|+...
T Consensus       267 lIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          267 FIGVSR-----GNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             EEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             EEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            887743     37899999999999999999998654

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.36  E-value=1e-06  Score=75.37  Aligned_cols=107  Identities=13%  Similarity=0.213  Sum_probs=67.5

Q ss_pred             CEEEEEcccHHHHHH-HHHHccCCCeEE-EEcCCCCCh-hHHHhhCCe-ecCCHHhhcc--cCCEEEEcCCCChhhhhcc
Q 027408           37 KTVGTVGCGRIGKLL-LQRLKPFNCNLL-YHDRVKMDP-QLEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        37 ~~igIiG~G~iG~~i-A~~l~~~G~~V~-~~d~~~~~~-~~~~~~g~~-~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i  110 (223)
                      .+|||||+|.||+.+ ++.+...+.++. ++|+++... +.++++++. .+++++++++  ++|+|++++|....     
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h-----   75 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELH-----   75 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGH-----
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHh-----
Confidence            379999999999998 777766778865 788875322 334556764 5678999986  59999999993222     


Q ss_pred             cHHHHhcCCCCcEEEEcC--CCCccCHHHHHHHHHhCCcc
Q 027408          111 DKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~s--rg~~vd~~al~~~L~~g~i~  148 (223)
                      .+.....++.|..++.-.  ....-+.+.|.++.++..+.
T Consensus        76 ~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~  115 (332)
T 2glx_A           76 REQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVV  115 (332)
T ss_dssp             HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCE
Confidence            123334455666444321  12223334466555554443

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.36  E-value=8.6e-07  Score=76.89  Aligned_cols=69  Identities=22%  Similarity=0.256  Sum_probs=54.2

Q ss_pred             CCCEEEEEcccHHHH-HHHHHHccC-CCeEE-EEcCCCC-ChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKM-DPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~-~iA~~l~~~-G~~V~-~~d~~~~-~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~  103 (223)
                      .-.+|||||+|.||+ .++..++.. +++|. ++|+++. ..+.++.+++..+.+++++++  +.|+|++|+|..
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~  100 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAV  100 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGG
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcH
Confidence            346899999999998 788888776 77865 7888752 233456678877789999996  589999999943

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.36  E-value=8.4e-07  Score=66.53  Aligned_cols=90  Identities=17%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee----cCCHHhh----cccCCEEEEcCCCChh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EEDLDTM----LPKCDIVVVNTPLTEK  105 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~l~e~----l~~aDvVv~~~p~~~~  105 (223)
                      ..+++|.|+|+|.+|+.+|+.|...|.+|+++|+++...+.....+...    ..+.+.+    +.++|+|++++|..+.
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF   83 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH
Confidence            3467899999999999999999999999999999764333344445432    1222222    4679999999994333


Q ss_pred             hhhcccHHHHhcCCCCcEEE
Q 027408          106 TRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~iv  125 (223)
                      +  +......+.+....+++
T Consensus        84 n--~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           84 N--LKILKALRSVSDVYAIV  101 (141)
T ss_dssp             H--HHHHHHHHHHCCCCEEE
T ss_pred             H--HHHHHHHHHhCCceEEE
Confidence            2  22234444454333443

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=98.34  E-value=2e-06  Score=71.44  Aligned_cols=101  Identities=17%  Similarity=0.130  Sum_probs=75.1

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeE-EEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      -..++|+++|+|.||+.+++.  . ++++ .+|+  .+..+    +++...+++++++.++|+|+-|.+     ...+.+
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~--~k~ge----lgv~a~~d~d~lla~pD~VVe~A~-----~~av~e   75 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD--RISKD----IPGVVRLDEFQVPSDVSTVVECAS-----PEAVKE   75 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC--SSCCC----CSSSEECSSCCCCTTCCEEEECSC-----HHHHHH
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe--ccccc----cCceeeCCHHHHhhCCCEEEECCC-----HHHHHH
Confidence            367899999999999999998  4 7874 5677  22222    266667789999999999999986     234444


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCcc
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~---~al~~~L~~g~i~  148 (223)
                      .....++.|.-+|.+|-|.+.|.   +.|.++.++|.-.
T Consensus        76 ~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           76 YSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             HHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             HHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            57788899999999999988887   4455555555433

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.33  E-value=8.3e-07  Score=74.51  Aligned_cols=71  Identities=18%  Similarity=0.186  Sum_probs=52.2

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhC----CeecCCHHhhcc-cCCEEEEcCCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETG----AKFEEDLDTMLP-KCDIVVVNTPLT  103 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g----~~~~~~l~e~l~-~aDvVv~~~p~~  103 (223)
                      ..+.+++++|+|.|.+|++++..|...|.+|.+++|+... .+.++.++    +.. .+++++.+ ++|+||.++|..
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivIn~t~~~  191 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQA-VSMDSIPLQTYDLVINATSAG  191 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGCCCSCCSEEEECCCC-
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEE-eeHHHhccCCCCEEEECCCCC
Confidence            4678999999999999999999999999999999997522 23333322    212 23445444 899999999954

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.33  E-value=1.3e-06  Score=78.20  Aligned_cols=109  Identities=13%  Similarity=0.092  Sum_probs=73.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH--------------------HhhCCeecCCHHhhcccCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE--------------------KETGAKFEEDLDTMLPKCD   94 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~--------------------~~~g~~~~~~l~e~l~~aD   94 (223)
                      +-.+|+|||+|.+|..+|..+...|++|+++|.++...+..                    ....+...++.++.+++||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            45689999999999999999999999999999874321111                    0112345568888899999


Q ss_pred             EEEEcCCCChhh-------hhcc--cHHHHhcCC---CCcEEEEcCCCCccCHHHHHH-HHHh
Q 027408           95 IVVVNTPLTEKT-------RGMF--DKDRIAKMK---KGVLIVNNARGAIMDTQAVVD-ACSS  144 (223)
Q Consensus        95 vVv~~~p~~~~t-------~~~i--~~~~~~~mk---~ga~ivn~srg~~vd~~al~~-~L~~  144 (223)
                      ++++|+| ||..       ..+.  .+...+.++   ++.++|.-|.-.+=..+.+.. .|++
T Consensus       100 ~~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~  161 (444)
T 3vtf_A          100 ATFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE  161 (444)
T ss_dssp             EEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT
T ss_pred             ceEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH
Confidence            9999988 3321       1111  123334454   678999988877655555443 3443

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.32  E-value=1.6e-06  Score=73.00  Aligned_cols=71  Identities=20%  Similarity=0.180  Sum_probs=53.3

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhhC---CeecCCHHhhc-ccCCEEEEcCCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETG---AKFEEDLDTML-PKCDIVVVNTPL  102 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~g---~~~~~~l~e~l-~~aDvVv~~~p~  102 (223)
                      +.++.|+++.|+|.|.+|++++..|...|. +|.+++|+... .+.++.++   +.. .+++++- .++|+||.++|.
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~-~~~~~l~~~~~DivInaTp~  191 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRI-SRYEALEGQSFDIVVNATSA  191 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEE-ECSGGGTTCCCSEEEECSSG
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeE-eeHHHhcccCCCEEEECCCC
Confidence            446899999999999999999999999996 89999997532 23333433   222 2444443 689999999994

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.32  E-value=1.2e-06  Score=75.54  Aligned_cols=66  Identities=23%  Similarity=0.388  Sum_probs=52.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCC-hhHHHhhCCe-ecCCHHhhcc--cCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMD-PQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~-~~~~~~~g~~-~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      .+|||||+|.||+.+++.+... ++++. ++|+++.. .+.++.+++. .+++++++++  ++|+|++|+|.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   74 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSST   74 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCC
Confidence            4899999999999999999775 67765 78987532 3345566763 6789999997  79999999993

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.32  E-value=1e-07  Score=80.73  Aligned_cols=95  Identities=12%  Similarity=0.066  Sum_probs=63.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC---eecCCHHhhc-ccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA---KFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~---~~~~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....+.....|.   ....+..+.+ ..+|+|++++|.. .+..++ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            68999999999999999999889999999997532222112232   1112334444 7899999999943 222222 3


Q ss_pred             HHHhcCCCCcEEEEcCCCCcc
Q 027408          113 DRIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~v  133 (223)
                      +....++++++||.+..|=-.
T Consensus        81 ~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSCCC
T ss_pred             HHHHhhCCCCEEEEeccCccc
Confidence            344456678899998887544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.31  E-value=1e-06  Score=75.73  Aligned_cols=68  Identities=13%  Similarity=0.121  Sum_probs=53.5

Q ss_pred             CCEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCC-hhHHHhhCC-eecCCHHhhcc--cCCEEEEcCCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMD-PQLEKETGA-KFEEDLDTMLP--KCDIVVVNTPLT  103 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~-~~~~~~~g~-~~~~~l~e~l~--~aDvVv~~~p~~  103 (223)
                      -.+|||||+|.||+.+++.++.. ++++. ++|+++.. .+.++.+++ ..++++++++.  ++|+|++++|..
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   78 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQ   78 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGG
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCH
Confidence            35899999999999999999875 67765 77887632 234556677 46789999997  799999999943

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.30  E-value=1e-06  Score=75.15  Aligned_cols=106  Identities=16%  Similarity=0.222  Sum_probs=65.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCC----------HHhhcccCCEEEEcCCCChhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED----------LDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~----------l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      ++|+|||.|.||..+|..|. .|.+|.+++|+....+..++.|+....+          -++....+|+|++++|.. .+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence            68999999999999999999 8999999999753233334445432110          124567899999999932 12


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      ..++  +.++.+.++. ||.+..|=- .++.+.+.+...++.
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEE
Confidence            2221  2233344555 887766642 233444444444443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.30  E-value=7.3e-07  Score=78.67  Aligned_cols=92  Identities=15%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             EEEEEcccHHHHHHHHHHccCC--------CeEEEEcCCCCC--hhHHHh-----------------hCCeecCCHHhhc
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKMD--PQLEKE-----------------TGAKFEEDLDTML   90 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G--------~~V~~~d~~~~~--~~~~~~-----------------~g~~~~~~l~e~l   90 (223)
                      ||+|||.|.+|.++|..|...|        .+|..|.|.+..  ....+.                 .++...+++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            8999999999999999997654        359999876421  111111                 1234457899999


Q ss_pred             ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +++|+|++++|  .+...-+-++....++++..+|+++.|=
T Consensus       116 ~~ad~ii~avP--s~~~r~~l~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIP--HQFLPRICSQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSC--GGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECC--hhhhHHHHHHhccccCCCceeEEecccc
Confidence            99999999999  2222222345556778899999999884

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.30  E-value=1.7e-06  Score=74.44  Aligned_cols=106  Identities=15%  Similarity=0.167  Sum_probs=70.1

Q ss_pred             CEEEEEcccHHHHHHHHHHc-c-CCCeE-EEEcCCCCCh-hHHHhhCC-eecCCHHhhcc--cCCEEEEcCCCChhhhhc
Q 027408           37 KTVGTVGCGRIGKLLLQRLK-P-FNCNL-LYHDRVKMDP-QLEKETGA-KFEEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~-~-~G~~V-~~~d~~~~~~-~~~~~~g~-~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~  109 (223)
                      .+|||||+|.||+.+++.++ . .++++ .++|+++... ..++.+++ ..+.+++++++  ++|+|++++|....    
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h----   84 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFH----   84 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGH----
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhH----
Confidence            58999999999999999987 5 47774 5789875322 33455677 56679999986  69999999993222    


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccC---HHHHHHHHHhC-Ccc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIMD---TQAVVDACSSG-HIA  148 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~vd---~~al~~~L~~g-~i~  148 (223)
                       -+.....++.|..++. ...-..+   .+.|.++.++. .+.
T Consensus        85 -~~~~~~al~~G~~v~~-eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           85 -PEMTIYAMNAGLNVFC-EKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             -HHHHHHHHHTTCEEEE-CSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             -HHHHHHHHHCCCEEEE-cCCCCCCHHHHHHHHHHHHhCCCCe
Confidence             1333445566765543 2221223   34477777766 555

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.28  E-value=1.6e-06  Score=74.12  Aligned_cols=107  Identities=14%  Similarity=0.193  Sum_probs=67.3

Q ss_pred             CEEEEEcccHHHH-HHHHHHccC-CCeEEEEcCCCCCh-hHHHhhCCee-cCCHHhhc-ccCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGK-LLLQRLKPF-NCNLLYHDRVKMDP-QLEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~-~iA~~l~~~-G~~V~~~d~~~~~~-~~~~~~g~~~-~~~l~e~l-~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .+|||||+|.||+ .+++.++.. +.++.++|+++... +.++.+++.. +.+..+++ +++|+|++++|.  ....   
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~--~~h~---   77 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAAT--DVHS---   77 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCG--GGHH---
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCc--hhHH---
Confidence            4799999999998 488888765 67877999875322 3445567653 34455566 679999999993  2221   


Q ss_pred             HHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHhCCcc
Q 027408          112 KDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       112 ~~~~~~mk~ga-~ivn~-srg~~vd~~al~~~L~~g~i~  148 (223)
                      +-....++.|. +++.- ..-.+-+.+.|.++.++..+.
T Consensus        78 ~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           78 TLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             HHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            22334455565 44442 112233445577777776655

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.26  E-value=2.8e-06  Score=72.87  Aligned_cols=66  Identities=15%  Similarity=0.218  Sum_probs=50.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCC-ChhHHHhhCCe-ecCCHHhhcc--cCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKM-DPQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~-~~~~~~~~g~~-~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      .+|||||+|.||+.+++.++.. +.++. ++|+++. ..+.++++++. .+.++++++.  +.|+|++++|.
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   77 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATIN   77 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCG
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCc
Confidence            5899999999999999988765 55654 7788763 33445566774 6789999997  79999999994

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.26  E-value=4.3e-06  Score=63.34  Aligned_cols=104  Identities=15%  Similarity=0.165  Sum_probs=73.4

Q ss_pred             CCCEEEEEcc----cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      +-++|+|||.    |++|..+++.+...|++|+-+++.....+   -.|...+.+++|+-...|++++++|. +....++
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~---i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~   87 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLKEPVDILDVFRPP-SALMDHL   87 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCc---CCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHH
Confidence            4578999999    89999999999999999777766411111   24677777899998899999999995 4444444


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                       ++..+. ..+.++++.+-    .++++.+..++..++
T Consensus        88 -~~~~~~-gi~~i~~~~g~----~~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           88 -PEVLAL-RPGLVWLQSGI----RHPEFEKALKEAGIP  119 (140)
T ss_dssp             -HHHHHH-CCSCEEECTTC----CCHHHHHHHHHTTCC
T ss_pred             -HHHHHc-CCCEEEEcCCc----CHHHHHHHHHHcCCE
Confidence             344433 33456655432    257778888777666

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.26  E-value=3e-06  Score=72.76  Aligned_cols=102  Identities=14%  Similarity=0.134  Sum_probs=68.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCe-EEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      .+|+|||+|+||+.+++.+... +++ +.++|++... ...  +++..++++++++.++|+|++++|....     -+..
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~--~gv~~~~d~~~ll~~~DvViiatp~~~h-----~~~~   75 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTK--TPVFDVADVDKHADDVDVLFLCMGSATD-----IPEQ   75 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSS--SCEEEGGGGGGTTTTCSEEEECSCTTTH-----HHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhc--CCCceeCCHHHHhcCCCEEEEcCCcHHH-----HHHH
Confidence            4799999999999999999776 677 4588887533 222  4565567888888889999999984322     1344


Q ss_pred             HhcCCCCcEEEEcCCCCc-c-CH-HHHHHHHHhCC
Q 027408          115 IAKMKKGVLIVNNARGAI-M-DT-QAVVDACSSGH  146 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~-v-d~-~al~~~L~~g~  146 (223)
                      ...++.|..++...-..+ + +. +.|.++.+++.
T Consensus        76 ~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           76 APKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             HHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            456677877776554332 2 22 34555555544

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.25  E-value=3.1e-06  Score=70.88  Aligned_cols=97  Identities=13%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCC---eecCCHHhhc-ccCCEEEEcCCCChhh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGA---KFEEDLDTML-PKCDIVVVNTPLTEKT  106 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~---~~~~~l~e~l-~~aDvVv~~~p~~~~t  106 (223)
                      ..+.|+++.|+|.|.+|+++++.|...|.+|++++|+... .+.++.++.   ....+++++. .++|+|+.++|.....
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~  194 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG  194 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC
Confidence            4678999999999999999999999999999999997532 233333221   1112344444 5899999999854321


Q ss_pred             h-hcccHHHHhcCCCCcEEEEcCCCC
Q 027408          107 R-GMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       107 ~-~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      . ..+..   ..++++.+++|+.-..
T Consensus       195 ~~~~i~~---~~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          195 DIPAIPS---SLIHPGIYCYDMFYQK  217 (271)
T ss_dssp             CCCCCCG---GGCCTTCEEEESCCCS
T ss_pred             CCCCCCH---HHcCCCCEEEEeccCC
Confidence            0 00221   2346677777776544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.25  E-value=2.3e-06  Score=72.94  Aligned_cols=66  Identities=15%  Similarity=0.274  Sum_probs=48.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHhh---------CCee-cCCHHhhcccCCEEEEcCCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET---------GAKF-EEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~~---------g~~~-~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ++|+|||.|.||..+|..|...|  .+|.++|+++...+ ....+         .+.. ..++ +.+++||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999998778  68999999752221 12111         1222 3566 6788999999999853

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.22  E-value=5.1e-06  Score=70.23  Aligned_cols=71  Identities=20%  Similarity=0.211  Sum_probs=55.0

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-hHHHhhC-------Ceec--CCHHhhcccCCEEEEcC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETG-------AKFE--EDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~~~~~g-------~~~~--~~l~e~l~~aDvVv~~~  100 (223)
                      ..+.|+++.|+|.|.+|++++..|...|. +|.+++|+.... +.++.++       +...  +++++.++++|+||.++
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence            46899999999999999999999999999 699999975322 2222221       2222  37888889999999999


Q ss_pred             CC
Q 027408          101 PL  102 (223)
Q Consensus       101 p~  102 (223)
                      |.
T Consensus       203 p~  204 (283)
T 3jyo_A          203 PM  204 (283)
T ss_dssp             ST
T ss_pred             CC
Confidence            94

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.22  E-value=7.7e-06  Score=62.20  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=72.5

Q ss_pred             CCEEEEEcc----cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           36 GKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        36 g~~igIiG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      -++|+|||.    |.+|..+++.|...|++|+-.++..  .+   -.|+..+.+++|+....|++++++|. +....++ 
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~--~~---i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv-   94 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKY--EE---VLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV-   94 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC--SE---ETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH-
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCC--Ce---ECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH-
Confidence            689999999    7999999999999999977776643  22   24777778899998899999999994 3333443 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccE
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~  149 (223)
                      ++..+. ..+.+++..  |.  .++.+.+..++..+.-
T Consensus        95 ~~~~~~-gi~~i~~~~--g~--~~~~l~~~a~~~Gi~v  127 (144)
T 2d59_A           95 EQAIKK-GAKVVWFQY--NT--YNREASKKADEAGLII  127 (144)
T ss_dssp             HHHHHH-TCSEEEECT--TC--CCHHHHHHHHHTTCEE
T ss_pred             HHHHHc-CCCEEEECC--Cc--hHHHHHHHHHHcCCEE
Confidence            333332 334555443  32  3677888888876663

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=98.21  E-value=1.3e-06  Score=73.85  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=63.4

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCCh--hh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE--KT  106 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~--~t  106 (223)
                      +.++.|+++.|+|.|.+|++++..|...|. +|.+++|+.... +.++.+......++++ + ++|+||.++|..-  ..
T Consensus       117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~  194 (282)
T 3fbt_A          117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKE  194 (282)
T ss_dssp             TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTST
T ss_pred             CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCC
Confidence            456889999999999999999999999998 899999975222 2222222122233444 4 8999999999532  11


Q ss_pred             h-hcccHHHHhcCCCCcEEEEcCCCC
Q 027408          107 R-GMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       107 ~-~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      . ..+..+.   ++++.+++|+.-.+
T Consensus       195 ~~~pi~~~~---l~~~~~v~DlvY~P  217 (282)
T 3fbt_A          195 GESPVDKEV---VAKFSSAVDLIYNP  217 (282)
T ss_dssp             TCCSSCHHH---HTTCSEEEESCCSS
T ss_pred             ccCCCCHHH---cCCCCEEEEEeeCC
Confidence            1 1234433   35677777775433

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.21  E-value=1.8e-06  Score=74.47  Aligned_cols=66  Identities=21%  Similarity=0.314  Sum_probs=52.0

Q ss_pred             CEEEEEcccHHHHHHHHHHc-c-CCCeEE-EEcCCCCC-hhHHHhhC--CeecCCHHhhccc--CCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLK-P-FNCNLL-YHDRVKMD-PQLEKETG--AKFEEDLDTMLPK--CDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~-~-~G~~V~-~~d~~~~~-~~~~~~~g--~~~~~~l~e~l~~--aDvVv~~~p~  102 (223)
                      .+|||||+|.||+.+++.++ . -++++. ++|+++.. .+.++.++  ...++++++++++  .|+|++|+|.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~   76 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWG   76 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCc
Confidence            47999999999999999998 5 367755 78887532 23445667  5677899999975  9999999993

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.17  E-value=3.2e-06  Score=73.46  Aligned_cols=68  Identities=22%  Similarity=0.269  Sum_probs=53.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHc-c-CCCeEE-EEcCCCCCh-hHHHhhC--CeecCCHHhhcc--cCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLK-P-FNCNLL-YHDRVKMDP-QLEKETG--AKFEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~-~-~G~~V~-~~d~~~~~~-~~~~~~g--~~~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      .-.+|||||+|.||+..++.+. . -++++. ++|+++... +.+++++  ...++++++++.  +.|+|++|+|.
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~   97 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASN   97 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCc
Confidence            3458999999999999999987 4 377765 789876433 3455667  567789999997  58999999994

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.16  E-value=1e-06  Score=75.07  Aligned_cols=106  Identities=17%  Similarity=0.280  Sum_probs=66.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeE-EEEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      .+|||||+|.||+.+++.+... +.++ .++|+++...+...+. +..+++++++++  ++|+|++++|....     -+
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h-----~~   84 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATH-----AE   84 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGH-----HH
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHH-----HH
Confidence            5899999999999999999875 6774 5889864221111111 445678999985  79999999993222     12


Q ss_pred             HHHhcCCCCcEE-EEc-CCCCccCHHHHHHHHHhCCcc
Q 027408          113 DRIAKMKKGVLI-VNN-ARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       113 ~~~~~mk~ga~i-vn~-srg~~vd~~al~~~L~~g~i~  148 (223)
                      -....++.|..+ +.- ..-.+-+...|.++.++..+.
T Consensus        85 ~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           85 ITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             HHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence            333445666644 432 112233345566666655444

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.16  E-value=9.1e-06  Score=69.74  Aligned_cols=107  Identities=8%  Similarity=0.085  Sum_probs=68.1

Q ss_pred             CEEEEEcccHHHH-HHHHHHccCCCeE-EEEcCCCCC-hhHHHhh-CCeecCCHHhhcc--cCCEEEEcCCCChhhhhcc
Q 027408           37 KTVGTVGCGRIGK-LLLQRLKPFNCNL-LYHDRVKMD-PQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        37 ~~igIiG~G~iG~-~iA~~l~~~G~~V-~~~d~~~~~-~~~~~~~-g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i  110 (223)
                      .+|||||+|.+|. .++..++..+.++ .++|+++.. .+.++.+ +...+++++++++  +.|+|++++|....     
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-----   79 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDR-----   79 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGH-----
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhH-----
Confidence            5899999999996 6777776668885 588988643 3445555 4566789999996  68999999993322     


Q ss_pred             cHHHHhcCCCCcEE-EEc-CCCCccCHHHHHHHHHhCCcc
Q 027408          111 DKDRIAKMKKGVLI-VNN-ARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       111 ~~~~~~~mk~ga~i-vn~-srg~~vd~~al~~~L~~g~i~  148 (223)
                      -+.....++.|..+ +.- ..-.+-+.++|.++.++..+.
T Consensus        80 ~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~  119 (336)
T 2p2s_A           80 AELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRK  119 (336)
T ss_dssp             HHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence            13334445556543 331 111222334455555554443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.15  E-value=2e-05  Score=74.87  Aligned_cols=117  Identities=13%  Similarity=0.176  Sum_probs=84.5

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh---------------h-------CCeecCCHHhhcccC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---------------T-------GAKFEEDLDTMLPKC   93 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~---------------~-------g~~~~~~l~e~l~~a   93 (223)
                      =++|||||.|.||..||..+...|++|+.+|+++...+....               .       .+....+++ .+++|
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~a  394 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTV  394 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSC
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhC
Confidence            469999999999999999999999999999987532211100               0       012233444 47799


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      |+||-++|.+.+.+.-+-+++-+.++++++|..-+.+  +....|.+.++ ..-+.+++--|.
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfn  454 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFS  454 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCS
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccC
Confidence            9999999988888888888888889999998655444  55566666543 445556776554

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.15  E-value=5.6e-06  Score=71.86  Aligned_cols=107  Identities=18%  Similarity=0.296  Sum_probs=71.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeE-EEEcCCCCC-hhHHHhhCC----eecCCHHhhcc--cCCEEEEcCCCChhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMD-PQLEKETGA----KFEEDLDTMLP--KCDIVVVNTPLTEKTR  107 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V-~~~d~~~~~-~~~~~~~g~----~~~~~l~e~l~--~aDvVv~~~p~~~~t~  107 (223)
                      .+|||||+|.||+.+++.+... ++++ .++|+++.. .+.++++++    ..+.+++++++  ++|+|++++|..  .+
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~--~h   84 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS--LH   84 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG--GH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH--HH
Confidence            5899999999999999998765 5675 578886522 234455563    45679999986  599999999932  22


Q ss_pred             hcccHHHHhcCCCCcEEEEcC--CCCccCHHHHHHHHHhCCcc
Q 027408          108 GMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~s--rg~~vd~~al~~~L~~g~i~  148 (223)
                         -+-....++.|..++.--  .-.+-+.++|.++.++..+.
T Consensus        85 ---~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           85 ---VEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             ---HHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             ---HHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence               233445567777655422  12223345677777776655

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.15  E-value=1.7e-06  Score=76.14  Aligned_cols=84  Identities=19%  Similarity=0.289  Sum_probs=68.8

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCC---eEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      ...+|.|||. |..|...++.++++|+   .|.++|++..      ..|..    + +.+.++|+||.|+........++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~------~~g~~----~-~~i~~aDivIn~vlig~~aP~Lv  281 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKET------SRGGP----F-DEIPQADIFINCIYLSKPIAPFT  281 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHH------TTCSC----C-THHHHSSEEEECCCCCSSCCCSC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccc------ccCCc----h-hhHhhCCEEEECcCcCCCCCccc
Confidence            4668999999 9999999999999998   8999998531      11222    2 33569999999998766667889


Q ss_pred             cHHHHhcC-CCCcEEEEcCC
Q 027408          111 DKDRIAKM-KKGVLIVNNAR  129 (223)
Q Consensus       111 ~~~~~~~m-k~ga~ivn~sr  129 (223)
                      .++.++.| |+|++|||+|-
T Consensus       282 t~e~v~~m~k~gsVIVDVA~  301 (394)
T 2qrj_A          282 NMEKLNNPNRRLRTVVDVSA  301 (394)
T ss_dssp             CHHHHCCTTCCCCEEEETTC
T ss_pred             CHHHHhcCcCCCeEEEEEec
Confidence            99999999 99999999973

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.15  E-value=5.1e-06  Score=71.70  Aligned_cols=69  Identities=22%  Similarity=0.223  Sum_probs=51.7

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhH-----HHh---h----CCeecCCHHhhcccCCEEEEcC--
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-----EKE---T----GAKFEEDLDTMLPKCDIVVVNT--  100 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-----~~~---~----g~~~~~~l~e~l~~aDvVv~~~--  100 (223)
                      .++|+|||.|.+|..+|..|...|+ +|..||+++...+.     ...   .    .+....++++.+++||+|++++  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            4699999999999999999988887 89999997632222     110   1    1223468888899999999998  


Q ss_pred             CCCh
Q 027408          101 PLTE  104 (223)
Q Consensus       101 p~~~  104 (223)
                      |..+
T Consensus        89 p~~~   92 (331)
T 1pzg_A           89 TKVP   92 (331)
T ss_dssp             SSCT
T ss_pred             CCCC
Confidence            6433

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.14  E-value=3e-06  Score=72.78  Aligned_cols=66  Identities=14%  Similarity=0.138  Sum_probs=51.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC---Ce-EEEEcCCCC-ChhHHHhhCC-eecCCHHhhcc--cCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN---CN-LLYHDRVKM-DPQLEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G---~~-V~~~d~~~~-~~~~~~~~g~-~~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      .+|||||+|.||+..++.++..+   ++ +.++|+++. ..+.++++++ ..++++++++.  +.|+|++++|.
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   76 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQH   76 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCG
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCc
Confidence            48999999999999999998654   35 457888652 2344566777 46789999996  69999999993

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.13  E-value=1.4e-05  Score=68.48  Aligned_cols=72  Identities=17%  Similarity=0.120  Sum_probs=53.2

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHH----Hh----hCC--e--ecCC---HHhhcccCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE----KE----TGA--K--FEED---LDTMLPKCD   94 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~----~~----~g~--~--~~~~---l~e~l~~aD   94 (223)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|.+++|+....+.+    ++    .+.  .  ..++   +.+.+.++|
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence            456899999999999999999999999999 899999983222222    11    121  1  1223   456678899


Q ss_pred             EEEEcCCC
Q 027408           95 IVVVNTPL  102 (223)
Q Consensus        95 vVv~~~p~  102 (223)
                      +||.++|.
T Consensus       229 iIINaTp~  236 (315)
T 3tnl_A          229 IFTNATGV  236 (315)
T ss_dssp             EEEECSST
T ss_pred             EEEECccC
Confidence            99999994

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.13  E-value=5.8e-06  Score=71.35  Aligned_cols=85  Identities=18%  Similarity=0.179  Sum_probs=57.2

Q ss_pred             CEEEEEcccHHHHH-HHH-HHcc-CCCeEE-EEcCCCCChhHHHh-hCCeecCCHHhhccc--CCEEEEcCCCChhhhhc
Q 027408           37 KTVGTVGCGRIGKL-LLQ-RLKP-FNCNLL-YHDRVKMDPQLEKE-TGAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~-~l~~-~G~~V~-~~d~~~~~~~~~~~-~g~~~~~~l~e~l~~--aDvVv~~~p~~~~t~~~  109 (223)
                      .+|||||+|.||+. .+. .+.. -++++. ++|+++...+.... .++..++++++++.+  .|+|++|+|.....   
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~---   79 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHF---   79 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHH---
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHH---
Confidence            47999999999996 555 4343 477865 88987644333333 356677899999976  89999999943222   


Q ss_pred             ccHHHHhcCCCCcEEEE
Q 027408          110 FDKDRIAKMKKGVLIVN  126 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn  126 (223)
                        +-....++.|..++.
T Consensus        80 --~~~~~al~aGk~Vl~   94 (345)
T 3f4l_A           80 --EYAKRALEAGKNVLV   94 (345)
T ss_dssp             --HHHHHHHHTTCEEEE
T ss_pred             --HHHHHHHHcCCcEEE
Confidence              333344555655554

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.12  E-value=5.9e-06  Score=71.79  Aligned_cols=66  Identities=21%  Similarity=0.250  Sum_probs=49.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--------CCeE-EEEcCCCCC-hhHHHhhCCe-ecCCHHhhcc--cCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--------NCNL-LYHDRVKMD-PQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--------G~~V-~~~d~~~~~-~~~~~~~g~~-~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      -+|||||+|.||+..++.++..        +++| .++|+++.. .+.++++++. .+++++++++  +.|+|++|+|.
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~  104 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPN  104 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCG
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCCh
Confidence            4799999999999888776542        5674 578887643 3456677874 6789999995  57999999993

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.12  E-value=4.7e-06  Score=71.03  Aligned_cols=101  Identities=18%  Similarity=0.300  Sum_probs=62.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhhCCe--ecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~--~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      .+|||||+|.||+.+++.++.. ++++. ++|+++...+   ..|+.  .++++.+. .++|+|++|+|  +.++   -+
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~---~~g~~~~~~~~l~~~-~~~DvViiatp--~~~h---~~   80 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVP---FELQPFRVVSDIEQL-ESVDVALVCSP--SREV---ER   80 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSC--HHHH---HH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHH---HcCCCcCCHHHHHhC-CCCCEEEECCC--chhh---HH
Confidence            5899999999999999999764 67876 6888753322   24543  23455555 68999999999  2222   13


Q ss_pred             HHHhcCCCCcEEEEcCC--C-CccCHHHHHHHHHhCC
Q 027408          113 DRIAKMKKGVLIVNNAR--G-AIMDTQAVVDACSSGH  146 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~sr--g-~~vd~~al~~~L~~g~  146 (223)
                      .....++.|..+++..-  + ...+...|.++.++..
T Consensus        81 ~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           81 TALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             HHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            34455667777776532  1 2223345666655544

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.11  E-value=1e-05  Score=66.93  Aligned_cols=82  Identities=7%  Similarity=0.073  Sum_probs=59.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      ++|+|+|+|+||+.+++.+...+.++. ++|++..     ...++..++++++++ ++|+|+-.++  |+.  .  .+.+
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~-----~~~gv~v~~dl~~l~-~~DVvIDft~--p~a--~--~~~~   71 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPK-----ATTPYQQYQHIADVK-GADVAIDFSN--PNL--L--FPLL   71 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSC--HHH--H--HHHH
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCcc-----ccCCCceeCCHHHHh-CCCEEEEeCC--hHH--H--HHHH
Confidence            689999999999999999987655755 5888653     145777778899988 9999985544  222  1  2333


Q ss_pred             hcCCCCcEEEEcCCCC
Q 027408          116 AKMKKGVLIVNNARGA  131 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~  131 (223)
                      . ++.|.-+|..+.|-
T Consensus        72 ~-l~~g~~vVigTTG~   86 (243)
T 3qy9_A           72 D-EDFHLPLVVATTGE   86 (243)
T ss_dssp             T-SCCCCCEEECCCSS
T ss_pred             H-HhcCCceEeCCCCC
Confidence            4 78888888777764

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.10  E-value=1.5e-05  Score=68.96  Aligned_cols=65  Identities=18%  Similarity=0.356  Sum_probs=50.7

Q ss_pred             CEEEEEcccHHHH-HHHHHHccC-CCeEE-EEcCCCCChhHHHh---hCCeecCCHHhhccc--CCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKMDPQLEKE---TGAKFEEDLDTMLPK--CDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~-~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~---~g~~~~~~l~e~l~~--aDvVv~~~p~  102 (223)
                      .+|||||+|.||+ ..+..++.. +++|. ++|++ ...+.++.   .++..+.++++++.+  .|+|++++|.
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   75 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPA   75 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCG
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCc
Confidence            4899999999999 577777665 67764 78887 45555555   466777899999975  8999999994

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.10  E-value=1.1e-05  Score=69.55  Aligned_cols=64  Identities=20%  Similarity=0.302  Sum_probs=48.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhH-----HHh---h----CCeecCCHHhhcccCCEEEEcC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-----EKE---T----GAKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-----~~~---~----g~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .++|+|||.|.||..+|..+...|+ +|..||+++...+.     ...   .    .+....++ +.+++||+|++++
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~av   90 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITA   90 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcC
Confidence            3699999999999999999998888 99999997643321     010   0    13333567 7789999999998

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.09  E-value=6.6e-06  Score=62.59  Aligned_cols=90  Identities=16%  Similarity=0.118  Sum_probs=57.9

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC-Ch-hHHH--hhCCeec-------CCHHhh-cccCCEEEEcCCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DP-QLEK--ETGAKFE-------EDLDTM-LPKCDIVVVNTPLT  103 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~~~--~~g~~~~-------~~l~e~-l~~aDvVv~~~p~~  103 (223)
                      .++|.|+|+|.+|+.+++.|...|.+|.++++++. .. ....  ..++...       ..++++ +.++|.|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            46799999999999999999999999999998631 11 1111  1233221       123344 78899999999855


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEc
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      +.+  +.-....+.+.+...++..
T Consensus        83 ~~n--~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           83 ADN--AFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHH--HHHHHHHHHHTSSSCEEEE
T ss_pred             HHH--HHHHHHHHHHCCCCEEEEE
Confidence            433  2224455555444444443

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.06  E-value=7.5e-06  Score=70.19  Aligned_cols=94  Identities=19%  Similarity=0.246  Sum_probs=59.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhH-HHhh--------CCe-ecCCHHhhcccCCEEEEcCCCCh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET--------GAK-FEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~-~~~~--------g~~-~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ++|+|||.|.||..+|..+...|.  +|.++|+++...+. ...+        ... ...+ .+.+++||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            589999999999999999988888  99999997522221 1111        111 1234 356789999999998533


Q ss_pred             hh---h-hc------ccHHHHhcC---CCCcEEEEcCCCC
Q 027408          105 KT---R-GM------FDKDRIAKM---KKGVLIVNNARGA  131 (223)
Q Consensus       105 ~t---~-~~------i~~~~~~~m---k~ga~ivn~srg~  131 (223)
                      ..   + .+      +-.+.++.+   .+++++|+++.+.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~  119 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPV  119 (319)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcH
Confidence            10   0 00      112222222   4788888876544

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.06  E-value=7.1e-06  Score=70.09  Aligned_cols=65  Identities=23%  Similarity=0.304  Sum_probs=48.0

Q ss_pred             CEEEEEcccHHHHHHHHHHcc--CCCeEEEEcCCCCChhHHH---hh-------C--CeecCCHHhhcccCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEK---ET-------G--AKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~---~~-------g--~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ++|+|||.|.+|..+|..+..  .|.+|..+|+++...+...   ..       .  +....++++ +++||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            589999999999999999976  5789999999764322111   00       1  223356766 8999999999973

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.06  E-value=8.3e-06  Score=72.79  Aligned_cols=107  Identities=17%  Similarity=0.194  Sum_probs=67.5

Q ss_pred             CEEEEEcccHHHH-HHHHHHccC-CCeE-EEEcCCCCC-hhHHHhhCCe-----ecCCHHhhcc--cCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGK-LLLQRLKPF-NCNL-LYHDRVKMD-PQLEKETGAK-----FEEDLDTMLP--KCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~-~iA~~l~~~-G~~V-~~~d~~~~~-~~~~~~~g~~-----~~~~l~e~l~--~aDvVv~~~p~~~~  105 (223)
                      .+|||||+|.||+ .+++.+... ++++ .++|+++.. .+.++.+++.     .+.++++++.  +.|+|++++|....
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence            5899999999997 899988765 5675 588886532 2334556664     4678999996  79999999993322


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcC--CCCccCHHHHHHHHHhCCcc
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~s--rg~~vd~~al~~~L~~g~i~  148 (223)
                           -+-....++.|..++.--  .-.+-+.+.|.++.++..+.
T Consensus       164 -----~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  203 (433)
T 1h6d_A          164 -----AEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK  203 (433)
T ss_dssp             -----HHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred             -----HHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCe
Confidence                 233334455666444321  11222334566655554433

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.05  E-value=7.9e-06  Score=65.82  Aligned_cols=90  Identities=18%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhhCCeec----CC---HHhh-cccCCEEEEcCCCChhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFE----ED---LDTM-LPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~----~~---l~e~-l~~aDvVv~~~p~~~~t~  107 (223)
                      ++|.|+|+|.+|+.+|+.|...|.+|.++|+++...+. ....+...+    .+   ++++ +.++|+|+++++....+ 
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n-   79 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN-   79 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH-
Confidence            47999999999999999999999999999987533222 233344321    12   3333 67899999999855443 


Q ss_pred             hcccHHHHhcCCCCcEEEEcC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~s  128 (223)
                       .+-....+.+.+...+|-..
T Consensus        80 -~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           80 -LFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             -HHHHHHHHHTSCCCEEEECC
T ss_pred             -HHHHHHHHHHcCCCeEEEEE
Confidence             22244444433444444333

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.04  E-value=4.5e-06  Score=70.44  Aligned_cols=97  Identities=19%  Similarity=0.241  Sum_probs=65.3

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhhCC---------eecCCHHhhcccCCEEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGA---------KFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~---------~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .++.|+++.|+|.|.+|+++|+.|...| +|++++|+.... +.++.++.         ....++.+.+.++|+||.++|
T Consensus       124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag  202 (287)
T 1nvt_A          124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP  202 (287)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCC
Confidence            4688999999999999999999999999 999999974221 22222110         011233566788999999998


Q ss_pred             CChhhh---hcccHHHHhcCCCCcEEEEcCCCC
Q 027408          102 LTEKTR---GMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       102 ~~~~t~---~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ......   ..+.  ..+.++++.+++|+.-..
T Consensus       203 ~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p  233 (287)
T 1nvt_A          203 IGMYPNIDVEPIV--KAEKLREDMVVMDLIYNP  233 (287)
T ss_dssp             TTCTTCCSSCCSS--CSTTCCSSSEEEECCCSS
T ss_pred             CCCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC
Confidence            543210   0120  134577888888887643

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.04  E-value=2.9e-05  Score=66.26  Aligned_cols=84  Identities=13%  Similarity=0.103  Sum_probs=59.0

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhh-CCeecCCHHhhc----------ccCCEEEEcCCCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKET-GAKFEEDLDTML----------PKCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~-g~~~~~~l~e~l----------~~aDvVv~~~p~~  103 (223)
                      .+|||||+ |.||+..++.++..+.+ +.++|+++.....++.+ +...+.++++++          ++.|+|++++|. 
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~-   82 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPN-   82 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCG-
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCc-
Confidence            58999999 78999999999888887 45888876544333333 456678999988          579999999993 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEE
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                       .++.   +-....++.|..++
T Consensus        83 -~~H~---~~~~~al~aGkhVl  100 (312)
T 3o9z_A           83 -HLHY---PQIRMALRLGANAL  100 (312)
T ss_dssp             -GGHH---HHHHHHHHTTCEEE
T ss_pred             -hhhH---HHHHHHHHCCCeEE
Confidence             3222   23333444555544

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.02  E-value=7.6e-06  Score=70.52  Aligned_cols=66  Identities=17%  Similarity=0.266  Sum_probs=50.5

Q ss_pred             CEEEEEcccHHHHH-HHHHHccC-CCeEE-EEcCCCC-ChhHHHhhCCe-ecCCHHhhcc--cCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKM-DPQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~-~~~~~~~~g~~-~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      .+|||||+|.||+. ++..++.. +++|. ++|+++. ..+.++++++. .+++++++++  +.|+|++++|.
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~   96 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPT   96 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCG
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCC
Confidence            48999999999986 46667655 67765 7888752 34456678874 5789999995  58999999993

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.02  E-value=2.2e-05  Score=68.28  Aligned_cols=105  Identities=12%  Similarity=0.224  Sum_probs=65.9

Q ss_pred             CEEEEEcccHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHHHhh-CCeecCCHHhhcc--cCCEEEEcCCCChhhhhcc
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i  110 (223)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++.  ...+.. +...+.++++++.  +.|+|++|+|.....    
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~----   81 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEE--KVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHA----   81 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHH--HHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHH----
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHH----
Confidence            47999999999997 77777665 77865 7788652  222333 5667789999997  789999999943222    


Q ss_pred             cHHHHhcCCCCcEEEEcC--CCCccCHHHHHHHHHhCCcc
Q 027408          111 DKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~s--rg~~vd~~al~~~L~~g~i~  148 (223)
                       +-....++.|..++.--  .-.+-+.++|.++.++..+.
T Consensus        82 -~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  120 (364)
T 3e82_A           82 -PLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRL  120 (364)
T ss_dssp             -HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCe
Confidence             23334445555554422  12223344455555554443

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.02  E-value=1.2e-05  Score=69.80  Aligned_cols=64  Identities=20%  Similarity=0.242  Sum_probs=49.9

Q ss_pred             CEEEEEcccHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHHHhh-CCeecCCHHhhccc--CCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLPK--CDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~e~l~~--aDvVv~~~p~  102 (223)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++..  .++++ +...+.++++++.+  .|+|++|+|.
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   75 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL--SKERYPQASIVRSFKELTEDPEIDLIVVNTPD   75 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG--GGTTCTTSEEESCSHHHHTCTTCCEEEECSCG
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHHhCCCCceECCHHHHhcCCCCCEEEEeCCh
Confidence            58999999999997 77777665 77764 78887532  34445 56677899999976  8999999993

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=98.00  E-value=1.4e-05  Score=71.43  Aligned_cols=111  Identities=18%  Similarity=0.180  Sum_probs=79.2

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC---eEEEEc----CC--C-CChh---HH---Hhh----CCe-ecCCHHhh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHD----RV--K-MDPQ---LE---KET----GAK-FEEDLDTM   89 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d----~~--~-~~~~---~~---~~~----g~~-~~~~l~e~   89 (223)
                      +..+.+++|.|+|.|..|+++++.|...|.   +|+++|    |+  . +..+   ..   ..+    +.. ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            456899999999999999999999999998   799999    76  1 1111   11   011    110 13568899


Q ss_pred             cccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus        90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~  146 (223)
                      ++++|+||.++|..+   +++.++.++.|+++.++++++...  .+.-+.++.+.|.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            999999999998421   456667788899999999995543  3444555555554

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=97.99  E-value=1e-05  Score=70.93  Aligned_cols=110  Identities=14%  Similarity=0.103  Sum_probs=69.8

Q ss_pred             CCEEEEEcccHHHHHHHHHHccC--CCeEE-EEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc-
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-  110 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~--G~~V~-~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i-  110 (223)
                      -.+|||||+| +|+..++.++..  ++++. ++|++. +..+.++++|+..++++++++.+.|++++++|....  .-. 
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h--~~~~   83 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVA--GGAG   83 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CT--TSHH
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCccc--chhH
Confidence            3589999999 799988888765  57755 778876 344567788998889999999999999999993321  100 


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      .+-..+.|+.|..++.=--=..-+.++|+++-++..+.
T Consensus        84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~  121 (372)
T 4gmf_A           84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCC  121 (372)
T ss_dssp             HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCE
Confidence            12233344455544332111222344555555555544

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.99  E-value=1.7e-05  Score=67.87  Aligned_cols=66  Identities=17%  Similarity=0.209  Sum_probs=51.6

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhh-CCeecCCHHhhc-----------ccCCEEEEcCCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKET-GAKFEEDLDTML-----------PKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~-g~~~~~~l~e~l-----------~~aDvVv~~~p~  102 (223)
                      .+|||||+ |.||+..++.++..+.+ +.++|+++.....++.+ +...++++++++           ++.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 78999999999888887 45888876544333333 456678899987           568999999993

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.99  E-value=2.4e-05  Score=67.02  Aligned_cols=73  Identities=18%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh----HHHhh----CC--e--ecCCH---HhhcccCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ----LEKET----GA--K--FEEDL---DTMLPKCD   94 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~----~~~~~----g~--~--~~~~l---~e~l~~aD   94 (223)
                      +.++.|+++.|+|.|.+|++++..|...|. +|.+++|+....+    .++++    +.  .  ...++   .+.+.++|
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D  222 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD  222 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence            356899999999999999999999999998 7999999832211    22221    21  1  22343   55678899


Q ss_pred             EEEEcCCCC
Q 027408           95 IVVVNTPLT  103 (223)
Q Consensus        95 vVv~~~p~~  103 (223)
                      +||.++|..
T Consensus       223 iIINaTp~G  231 (312)
T 3t4e_A          223 ILTNGTKVG  231 (312)
T ss_dssp             EEEECSSTT
T ss_pred             EEEECCcCC
Confidence            999999943

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.98  E-value=1.3e-05  Score=69.26  Aligned_cols=67  Identities=16%  Similarity=0.165  Sum_probs=49.0

Q ss_pred             CEEEEEcccHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHHHhhCCeecCCHHhhccc--CCEEEEcCCCCh
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~~--aDvVv~~~p~~~  104 (223)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++...+ ....+...++++++++.+  .|+|++|+|...
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   79 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDT   79 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-TTCSSCCEESCHHHHHHCSSCCEEEECSCTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-hhCCCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence            58999999999997 78877765 67765 7887642111 111245667899999965  899999999543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.98  E-value=6.9e-06  Score=73.01  Aligned_cols=91  Identities=14%  Similarity=0.189  Sum_probs=63.1

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----CCH---Hhh-cccCCEEEEcCCCChhhh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDL---DTM-LPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l---~e~-l~~aDvVv~~~p~~~~t~  107 (223)
                      +.+|.|+|+|++|+.+|+.|...|.+|+++|+++...+..+..|+..+    ++.   +++ +.++|+|+++++..+.+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            457999999999999999999999999999997644444555565321    222   233 578999999999654443


Q ss_pred             hcccHHHHhcCCCCcEEEEcC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .+  ....+.+.+...+|--+
T Consensus        84 ~i--~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           84 QL--TEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             HH--HHHHHHHCTTCEEEEEE
T ss_pred             HH--HHHHHHhCCCCeEEEEE
Confidence            22  45555666665554433

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.97  E-value=3e-05  Score=65.04  Aligned_cols=67  Identities=21%  Similarity=0.219  Sum_probs=50.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      .++++.|+|.|.+|++++..|...|. +|.+++|+. +..+.++.++.....++.  +.++|+||.++|..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~g  186 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG  186 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCC
Confidence            57899999999999999999999998 799999975 233444455543322222  46899999999954

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.97  E-value=6.9e-06  Score=71.41  Aligned_cols=85  Identities=22%  Similarity=0.249  Sum_probs=57.4

Q ss_pred             CCEEEEEcccHHHHH-HHHHHccC-CCeEE-EEcCCCCCh-hHHHhh-CCeecCCHHhhccc--CCEEEEcCCCChhhhh
Q 027408           36 GKTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDP-QLEKET-GAKFEEDLDTMLPK--CDIVVVNTPLTEKTRG  108 (223)
Q Consensus        36 g~~igIiG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~-~~~~~~-g~~~~~~l~e~l~~--aDvVv~~~p~~~~t~~  108 (223)
                      ..+|||||+|.||+. +++.++.. +.++. ++|+++... +.++.+ +...++++++++++  .|+|++|+|  +.++.
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp--~~~H~   82 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGP--PQLHF   82 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSC--HHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCC--cHHHH
Confidence            358999999999995 88888766 67765 889875322 233344 34567899999975  599999999  33322


Q ss_pred             cccHHHHhcCCCCcEEE
Q 027408          109 MFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~iv  125 (223)
                         +-....++.|..++
T Consensus        83 ---~~~~~al~aGkhVl   96 (359)
T 3m2t_A           83 ---EMGLLAMSKGVNVF   96 (359)
T ss_dssp             ---HHHHHHHHTTCEEE
T ss_pred             ---HHHHHHHHCCCeEE
Confidence               23334445555444

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.95  E-value=4.1e-05  Score=65.78  Aligned_cols=64  Identities=22%  Similarity=0.272  Sum_probs=47.9

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhH-----HH---hh--C--CeecCCHHhhcccCCEEEEcC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-----EK---ET--G--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-----~~---~~--g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .++|+|||.|.+|..+|..+...|+ +|..+|+++...+.     ..   ..  .  +....++ +.+++||+|++++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            3689999999999999999988887 89999987642221     11   01  1  2233567 7789999999998

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.94  E-value=0.00014  Score=61.83  Aligned_cols=96  Identities=17%  Similarity=0.111  Sum_probs=73.8

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC--ChhHHHhhCCeecCCHHhhcccCCEEEEcCCC-------
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM--DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL-------  102 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~-------  102 (223)
                      .+.|.+|+++|= +++.++++..+..+|++|.+..|...  ..+......+....+++++++++|+|....=.       
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~  230 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE  230 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence            589999999996 99999999999999999999998652  22233333466678999999999999884320       


Q ss_pred             Chh-----hhhcccHHHHhcCCCCcEEEEcC
Q 027408          103 TEK-----TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       103 ~~~-----t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ..+     ...-++.+.++.+|++++|..+.
T Consensus       231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHpl  261 (301)
T 2ef0_A          231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCL  261 (301)
T ss_dssp             -CHHHHHTTTCCBCHHHHTTSCTTCEEEECS
T ss_pred             hhHHHHHhhccccCHHHHHhcCCCcEEECCC
Confidence            011     12457889999999999998875

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.93  E-value=1.3e-05  Score=69.85  Aligned_cols=89  Identities=21%  Similarity=0.171  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh------CCeecCCHHhhcccCCEEEEcCCCChhhh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET------GAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~------g~~~~~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      =+.+||+|+|+|.+|+.+|+.|+. ..+|.+.|++....+.....      .+...+++.++++++|+|+.++|..  ..
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~--~~   90 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF--LG   90 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG--GH
T ss_pred             CCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc--cc
Confidence            345689999999999999999976 47899999865333322221      1112235667889999999999932  11


Q ss_pred             hcccHHHHhcCCCCcEEEEcC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .   .-.-..++.|..+++++
T Consensus        91 ~---~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           91 F---KSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             H---HHHHHHHHHTCEEEECC
T ss_pred             c---hHHHHHHhcCcceEeee
Confidence            1   11223345566777765

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.92  E-value=8.2e-06  Score=72.03  Aligned_cols=66  Identities=20%  Similarity=0.321  Sum_probs=50.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccC---------CCeEE-EEcCCCC-ChhHHHhhCC-eecCCHHhhcc--cCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF---------NCNLL-YHDRVKM-DPQLEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~---------G~~V~-~~d~~~~-~~~~~~~~g~-~~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      .+|||||+|.||+..+..++..         +.+|. ++|+++. ..+.++++++ ..+++++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            4899999999999988888653         34644 7788752 3345567777 46789999995  58999999993

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.92  E-value=7.8e-06  Score=71.73  Aligned_cols=66  Identities=20%  Similarity=0.290  Sum_probs=52.6

Q ss_pred             CEEEEEccc-HHHHHHHHHHccC-CCeEE-EEcCCCC-ChhHHHhhCCeecCCHHhhccc--CCEEEEcCCC
Q 027408           37 KTVGTVGCG-RIGKLLLQRLKPF-NCNLL-YHDRVKM-DPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G-~iG~~iA~~l~~~-G~~V~-~~d~~~~-~~~~~~~~g~~~~~~l~e~l~~--aDvVv~~~p~  102 (223)
                      .+|||||+| .+|..++..+... ++++. ++|+++. ..+.++++++..+.++++++++  .|+|++++|.
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~   74 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPH   74 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCG
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCc
Confidence            479999999 9999999998765 66754 7888653 2334566788888899999974  9999999993

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.91  E-value=1.2e-05  Score=69.24  Aligned_cols=67  Identities=24%  Similarity=0.401  Sum_probs=52.1

Q ss_pred             CCEEEEEccc-HHHHHHHHHHccC--CCeE-EEEcCCCCC-hhHHHhhCC-eecCCHHhhcc--cCCEEEEcCCC
Q 027408           36 GKTVGTVGCG-RIGKLLLQRLKPF--NCNL-LYHDRVKMD-PQLEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG~G-~iG~~iA~~l~~~--G~~V-~~~d~~~~~-~~~~~~~g~-~~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      -.+|||||+| .+|+..+..++..  ++++ .++|+++.. .+.++++++ ..+++++++++  +.|+|++++|.
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   92 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV   92 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence            3589999999 8999999999876  4675 588887532 234556676 66789999985  58999999993

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.91  E-value=1.7e-05  Score=67.59  Aligned_cols=112  Identities=14%  Similarity=0.192  Sum_probs=66.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhh--C------Cee-cCCHHhhcccCCEEEEcCCCCh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--G------AKF-EEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~--g------~~~-~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ++|+|||.|.+|..+|..+...|.  +|..+|+++...+ ...++  .      ... ..+ .+.+++||+|+++++...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            589999999999999999998888  8999998642111 11111  1      111 123 356889999999995322


Q ss_pred             h-----------hhhc---ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEE
Q 027408          105 K-----------TRGM---FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (223)
Q Consensus       105 ~-----------t~~~---i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a  150 (223)
                      .           +..+   +.++.-+ ..+++++++++.+.-+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~-~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITR-AAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHH-HCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHH-hCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           1111   1122222 358899988766543333444444444455444

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.91  E-value=1.6e-05  Score=69.84  Aligned_cols=158  Identities=15%  Similarity=0.171  Sum_probs=101.3

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC-C---C----h----hHHHhhC-CeecCCHHhhcccCCEE
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK-M---D----P----QLEKETG-AKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~-~---~----~----~~~~~~g-~~~~~~l~e~l~~aDvV   96 (223)
                      +..+...+|.|+|.|..|..+|+.+...|. +|+.+|++. .   .    .    ..+.... .....+|+|+++.+|++
T Consensus       183 g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~  262 (398)
T 2a9f_A          183 KKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIF  262 (398)
T ss_dssp             TCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSE
T ss_pred             CCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEE
Confidence            557899999999999999999999999999 899999863 0   0    0    1112111 11134699999999998


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEcc
Q 027408           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTP  176 (223)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~tP  176 (223)
                      +=+.     ..+++.++.++.|+++.+|+.+|....  |..=.++.+.|+... +.=       ..+.| -+..|+++-|
T Consensus       263 IG~S-----apgl~T~EmVk~Ma~~pIIfalsNPt~--E~~pe~a~~~g~~i~-atG-------rs~~p-~Q~NN~~~FP  326 (398)
T 2a9f_A          263 IGVS-----APGVLKAEWISKMAARPVIFAMANPIP--EIYPDEALEAGAYIV-GTG-------RSDFP-NQINNVLAFP  326 (398)
T ss_dssp             EECC-----STTCCCHHHHHTSCSSCEEEECCSSSC--SSCHHHHHTTTCSEE-EES-------CTTSS-SBCCGGGTHH
T ss_pred             EecC-----CCCCCCHHHHHhhCCCCEEEECCCCCc--cCCHHHHHHhCCeEE-EeC-------CCCCC-CcCCceeEcc
Confidence            7663     257899999999999999999998764  222222333455221 211       11112 2345677766


Q ss_pred             CCCCCc-----HHHHHHHHHHHHHHHHHHHcCC
Q 027408          177 HVSGTT-----IDAQLRYAAGVKDMLDRYFKGE  204 (223)
Q Consensus       177 H~a~~t-----~~~~~~~~~~~~~~i~~~~~g~  204 (223)
                      =++-..     ..-.+.|...+++.|.+...-+
T Consensus       327 gi~~Gal~~~a~~I~d~m~~aAa~alA~~~~~~  359 (398)
T 2a9f_A          327 GIFRGALDARAKTITVEMQIAAAKGIASLVPDD  359 (398)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHTCSSC
T ss_pred             hHHHHHHHcCCcCCCHHHHHHHHHHHHhcCCcc
Confidence            544211     1122445556667676666443

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.90  E-value=4.3e-05  Score=62.33  Aligned_cols=92  Identities=20%  Similarity=0.187  Sum_probs=62.1

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH---HHhhCCeec--CCHHhhcccCCEEEEcCCCChh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKETGAKFE--EDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---~~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ..+|.|++|.|||.|.+|..-++.|...|.+|+++++... .+.   ....++...  .-.++.+.++|+|+.++. +++
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~-~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d~~  103 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS-AEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-DQA  103 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC-HHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-CTH
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-CHH
Confidence            4579999999999999999999999999999999998642 322   222233221  112345788999987765 333


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                          +|.......+ -.++||+..
T Consensus       104 ----~N~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A          104 ----VNKFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             ----HHHHHHHHSC-TTCEEEC--
T ss_pred             ----HHHHHHHHHh-CCCEEEEeC
Confidence                3344444455 557788853

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.89  E-value=2e-05  Score=68.32  Aligned_cols=66  Identities=18%  Similarity=0.294  Sum_probs=50.5

Q ss_pred             CEEEEEcccHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHHHhh-CCeecCCHHhhcc--cCCEEEEcCCCCh
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~e~l~--~aDvVv~~~p~~~  104 (223)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++  ...++.+ +...++++++++.  +.|+|++|+|...
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   77 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRT--EEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGL   77 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCH--HHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTT
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHH
Confidence            48999999999997 77777765 77764 778764  2234444 5667789999997  6899999999543

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.89  E-value=3.3e-05  Score=65.67  Aligned_cols=95  Identities=13%  Similarity=0.172  Sum_probs=59.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHH--hhCC------e--ecCCHHhhcccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEK--ETGA------K--FEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~--~~g~------~--~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ..++|+|||.|.||..+|..|...|.  +|.++|++....+ ...  ..+.      .  ...+. +.++++|+|+++++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~   84 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG   84 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCC
Confidence            45799999999999999999998888  9999999742221 011  1111      1  11243 56789999999995


Q ss_pred             CChhh-----------hh---cccHHHHhcCCCCcEEEEcCCCC
Q 027408          102 LTEKT-----------RG---MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       102 ~~~~t-----------~~---~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      .....           ..   -+-++..+ ..+++++++++.|-
T Consensus        85 ~~~~~g~~r~~~~~~n~~~~~~~~~~i~~-~~~~~~vi~~~Np~  127 (319)
T 1lld_A           85 PRQKPGQSRLELVGATVNILKAIMPNLVK-VAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHH-HCTTSEEEECCSSH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCceEEEecCch
Confidence            32110           00   11122222 36788898887654

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.89  E-value=3.7e-05  Score=68.70  Aligned_cols=85  Identities=20%  Similarity=0.286  Sum_probs=57.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHccC-CCeE-EEEcCCCCChhH-HH---hhC---CeecC----CHHhhcc--cCCEEEEcC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQL-EK---ETG---AKFEE----DLDTMLP--KCDIVVVNT  100 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~-G~~V-~~~d~~~~~~~~-~~---~~g---~~~~~----~l~e~l~--~aDvVv~~~  100 (223)
                      -.+|||||+|.||+..+..+... +++| .++|+++...+. ++   ++|   ...++    +++++++  +.|+|++++
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            35899999999999999988765 6775 588887532222 22   234   34566    8999997  589999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEE
Q 027408          101 PLTEKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      |....  .   +-..+.|+.|..++
T Consensus       100 p~~~h--~---~~~~~al~aGkhV~  119 (444)
T 2ixa_A          100 PWEWH--H---EHGVAAMKAGKIVG  119 (444)
T ss_dssp             CGGGH--H---HHHHHHHHTTCEEE
T ss_pred             CcHHH--H---HHHHHHHHCCCeEE
Confidence            93322  1   33344455565444

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.87  E-value=4.1e-05  Score=64.94  Aligned_cols=81  Identities=21%  Similarity=0.324  Sum_probs=65.3

Q ss_pred             cccCCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||++.|||-+ .+|+.+|..|...++.|+.+....              .++.+.+++||+|+.++.    ..+
T Consensus       173 ~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G----~p~  234 (303)
T 4b4u_A          173 NNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVG----KAE  234 (303)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSC----STT
T ss_pred             HCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccC----CCC
Confidence            3568999999999975 569999999999999999887532              378889999999999986    234


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+   .+|+|+++||++--.
T Consensus       235 ~i~~d---~vk~GavVIDVGin~  254 (303)
T 4b4u_A          235 LIQKD---WIKQGAVVVDAGFHP  254 (303)
T ss_dssp             CBCGG---GSCTTCEEEECCCBC
T ss_pred             ccccc---cccCCCEEEEeceec
Confidence            55544   468999999998543

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.86  E-value=4e-05  Score=64.84  Aligned_cols=105  Identities=14%  Similarity=0.133  Sum_probs=70.2

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhccc
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ..+|+|+|+ |++|+.+++.+...|++++ .+||.....   +..|+..+.+++++..  ..|++++++|.  ....-+-
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~---~~~G~~vy~sl~el~~~~~~D~viI~tP~--~~~~~~~   81 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT---THLGLPVFNTVREAVAATGATASVIYVPA--PFCKDSI   81 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHHHHHCCCEEEECCCG--GGHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc---eeCCeeccCCHHHHhhcCCCCEEEEecCH--HHHHHHH
Confidence            468999999 9999999999988898843 667642111   2457777789999998  89999999993  3222222


Q ss_pred             HHHHhcCCCCc-EEEEcCCCCc-cCHHHHHHHHHhCCcc
Q 027408          112 KDRIAKMKKGV-LIVNNARGAI-MDTQAVVDACSSGHIA  148 (223)
Q Consensus       112 ~~~~~~mk~ga-~ivn~srg~~-vd~~al~~~L~~g~i~  148 (223)
                      .+..+   .|. .+|..+-|-- -+.+.|.++.++..+.
T Consensus        82 ~ea~~---~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           82 LEAID---AGIKLIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            33333   333 3455555532 2445788888776654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.85  E-value=2.8e-05  Score=66.25  Aligned_cols=93  Identities=10%  Similarity=0.066  Sum_probs=58.5

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhHHH---hh---CCeecCCHHhhcccCCEEEEcCCCCh---
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEK---ET---GAKFEEDLDTMLPKCDIVVVNTPLTE---  104 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~---~~---g~~~~~~l~e~l~~aDvVv~~~p~~~---  104 (223)
                      .++|+|||.|.||..+|..+...|.  +|..+|.+......+.   ..   .+....++ +.+++||+|+++.....   
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            4799999999999999999977777  8999998763111111   11   23333567 66899999999973210   


Q ss_pred             -------hhhh---cccHHHHhcCCCCcEEEEcCCC
Q 027408          105 -------KTRG---MFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       105 -------~t~~---~i~~~~~~~mk~ga~ivn~srg  130 (223)
                             .+..   -+.++.-+. .|++++++++..
T Consensus        93 tR~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~sNP  127 (303)
T 2i6t_A           93 SYLDVVQSNVDMFRALVPALGHY-SQHSVLLVASQP  127 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH-TTTCEEEECSSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcCCh
Confidence                   1111   112222233 488999988763

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.84  E-value=4.6e-05  Score=65.64  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=73.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-CCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++...+.++++|...+ .+.+++.+..|+|+-++....     .-..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~-----~~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY-----DLKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC-----CHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH-----HHHH
Confidence            5899999999999999999999999999999998877888888887432 344444457899998887321     2367


Q ss_pred             HHhcCCCCcEEEEcCCCC
Q 027408          114 RIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~  131 (223)
                      .++.++++..++.++...
T Consensus       251 ~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          251 YLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             HHTTEEEEEEEEECCCCC
T ss_pred             HHHHHhcCCEEEEECCCC
Confidence            788899999999886533

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.84  E-value=0.00012  Score=62.43  Aligned_cols=96  Identities=17%  Similarity=0.196  Sum_probs=70.9

Q ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCC-C-hhH-HHhh--CCeecCCHHhhcccCCEEEEcC----CC
Q 027408           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQL-EKET--GAKFEEDLDTMLPKCDIVVVNT----PL  102 (223)
Q Consensus        33 ~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~-~~~~--g~~~~~~l~e~l~~aDvVv~~~----p~  102 (223)
                      .+.|.+|++|| .+++.++++..+..+|++|.+..|... . .+. ++..  ++....+++++++++|+|..-.    ..
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~  230 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF  230 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence            58999999999 579999999999999999999988541 2 222 1122  3455689999999999998754    10


Q ss_pred             ---Ch-----hhhhcccHHHHhcCCCCcEEEEcC
Q 027408          103 ---TE-----KTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       103 ---~~-----~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                         .+     -...-++.+.++.+|++++|..+.
T Consensus       231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             -------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence               00     113457889999999999988774

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.84  E-value=2.4e-05  Score=63.60  Aligned_cols=87  Identities=17%  Similarity=0.248  Sum_probs=57.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee----cCC---HHhh-cccCCEEEEcCCCChhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EED---LDTM-LPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~---l~e~-l~~aDvVv~~~p~~~~t  106 (223)
                      ..++|.|+|+|.+|+.+|+.|...|. |+++++++...+... .++..    ..+   ++++ +.++|.|++++|..+.+
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n   85 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET   85 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH
Confidence            34689999999999999999999999 999998763333333 44432    122   2333 67899999999854433


Q ss_pred             hhcccHHHHhcCCCCcEEE
Q 027408          107 RGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~iv  125 (223)
                        +.-....+.+.++..+|
T Consensus        86 --~~~~~~a~~~~~~~~ii  102 (234)
T 2aef_A           86 --IHCILGIRKIDESVRII  102 (234)
T ss_dssp             --HHHHHHHHHHCSSSEEE
T ss_pred             --HHHHHHHHHHCCCCeEE
Confidence              33345556666764443

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=97.84  E-value=1.3e-05  Score=69.57  Aligned_cols=66  Identities=21%  Similarity=0.190  Sum_probs=49.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--------CCe-EEEEcCCCC-ChhHHHhhCC-eecCCHHhhcc--cCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--------NCN-LLYHDRVKM-DPQLEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--------G~~-V~~~d~~~~-~~~~~~~~g~-~~~~~l~e~l~--~aDvVv~~~p~  102 (223)
                      -+|||||+|.||+..++.++..        +.+ +.++|+++. ..+.++++++ ..+++++++++  +.|+|++++|.
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~   85 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPG   85 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence            4899999999999988877543        235 447788752 3345566776 45689999995  48999999993

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.84  E-value=3.2e-05  Score=69.95  Aligned_cols=66  Identities=17%  Similarity=0.190  Sum_probs=51.8

Q ss_pred             CCEEEEEcc----cHHHHHHHHHHccC--CCeE-EEEcCCCCC-hhHHHhhCCe---ecCCHHhhcc--cCCEEEEcCC
Q 027408           36 GKTVGTVGC----GRIGKLLLQRLKPF--NCNL-LYHDRVKMD-PQLEKETGAK---FEEDLDTMLP--KCDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG~----G~iG~~iA~~l~~~--G~~V-~~~d~~~~~-~~~~~~~g~~---~~~~l~e~l~--~aDvVv~~~p  101 (223)
                      -.+|||||+    |.||+..++.++..  +++| .++|+++.. ...++.+++.   .+.+++++++  +.|+|++|+|
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp  117 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK  117 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence            358999999    99999999999875  6775 478886532 2344556764   6789999995  6999999999

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.83  E-value=0.00025  Score=60.50  Aligned_cols=96  Identities=14%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH---H----HhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL---E----KETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~---~----~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|.+|++||=|  ++.++++..+..+|++|.+..|... .. +.   +    ++.|  +....+++++++++|+|...
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            5899999999985  9999999999999999999998652 22 12   1    1445  45578999999999999884


Q ss_pred             CCC-------Chh-----hhhcccHHHHhcCCCCcEEEEcC
Q 027408          100 TPL-------TEK-----TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       100 ~p~-------~~~-----t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .=.       .++     ...-++.+.++.+|++++|..+.
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            320       011     13457888888899999888774

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=97.83  E-value=0.00019  Score=61.95  Aligned_cols=96  Identities=14%  Similarity=0.190  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH-------HHhhC--CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL-------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|.+|++||= +++.++++..+..+|++|.+..|... .. +.       ++..|  +....+++++++++|+|....
T Consensus       176 ~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~  255 (340)
T 4ep1_A          176 TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDV  255 (340)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecC
Confidence            489999999994 78999999999999999999998642 22 21       12445  445679999999999998755


Q ss_pred             CCCh------h-----hhhcccHHHHhcCCCCcEEEEcC
Q 027408          101 PLTE------K-----TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       101 p~~~------~-----t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      =-..      +     ...-++.+.++.+|++++|..+.
T Consensus       256 w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          256 WMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             C------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             ccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence            2110      0     12457889999999999998775

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.82  E-value=1.8e-05  Score=70.12  Aligned_cols=85  Identities=19%  Similarity=0.248  Sum_probs=58.7

Q ss_pred             CCEEEEEcccH---HHHHHHHHHccCC-CeEE--EEcCCCC-ChhHHHhhCC---eecCCHHhhccc-------CCEEEE
Q 027408           36 GKTVGTVGCGR---IGKLLLQRLKPFN-CNLL--YHDRVKM-DPQLEKETGA---KFEEDLDTMLPK-------CDIVVV   98 (223)
Q Consensus        36 g~~igIiG~G~---iG~~iA~~l~~~G-~~V~--~~d~~~~-~~~~~~~~g~---~~~~~l~e~l~~-------aDvVv~   98 (223)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|+++. ..+.++++|+   ..++++++++++       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999988887665 6765  5688652 2344566787   467899999976       899999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEE
Q 027408           99 NTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      ++|.....     +-....++.|..|+
T Consensus       117 ~tp~~~H~-----~~~~~al~aGkhVl  138 (417)
T 3v5n_A          117 VTPNHVHY-----AAAKEFLKRGIHVI  138 (417)
T ss_dssp             CSCTTSHH-----HHHHHHHTTTCEEE
T ss_pred             CCCcHHHH-----HHHHHHHhCCCeEE
Confidence            99944322     33334455555444

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.81  E-value=0.00034  Score=59.87  Aligned_cols=96  Identities=14%  Similarity=0.186  Sum_probs=73.4

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH---HH----hhC--CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL---EK----ETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~---~~----~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|.+|++||= +++.++++..+..+|++|.+..|... .. +.   ++    +.|  +....+++++++++|+|....
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            589999999996 99999999999999999999998652 22 22   11    445  445689999999999998844


Q ss_pred             CC-------Chh-----hhhcccHHHHhcCCCCcEEEEcC
Q 027408          101 PL-------TEK-----TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       101 p~-------~~~-----t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      =.       .++     ...-++.+.++.+|++++|..+.
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            21       111     13457899999999999998774

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.81  E-value=1.1e-05  Score=70.96  Aligned_cols=68  Identities=21%  Similarity=0.186  Sum_probs=52.6

Q ss_pred             CCEEEEEcccH---HHHHHHHHHccCC-CeEE--EEcCCCC-ChhHHHhhCC---eecCCHHhhccc-------CCEEEE
Q 027408           36 GKTVGTVGCGR---IGKLLLQRLKPFN-CNLL--YHDRVKM-DPQLEKETGA---KFEEDLDTMLPK-------CDIVVV   98 (223)
Q Consensus        36 g~~igIiG~G~---iG~~iA~~l~~~G-~~V~--~~d~~~~-~~~~~~~~g~---~~~~~l~e~l~~-------aDvVv~   98 (223)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|+++. ..+.++++|+   ..++++++++.+       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            45899999999   9999998887654 6765  4688652 3344566787   567899999965       899999


Q ss_pred             cCCCC
Q 027408           99 NTPLT  103 (223)
Q Consensus        99 ~~p~~  103 (223)
                      ++|..
T Consensus        92 ~tp~~   96 (398)
T 3dty_A           92 ATPNG   96 (398)
T ss_dssp             ESCGG
T ss_pred             CCCcH
Confidence            99943

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=97.80  E-value=0.00015  Score=61.68  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccC-CCeEEEEcCCCC--ChhHHHhhCC--eecCCHHhhcccCCEEEEcCCCCh
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM--DPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~-G~~V~~~d~~~~--~~~~~~~~g~--~~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      .+.|.+|+++|=   |++.++++..+..+ |++|.+..|...  ..+..++.|.  ....+++++++++|+|....=-.+
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e  225 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE  225 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence            589999999996   69999999999999 999999998642  2222334454  345789999999999988654321


Q ss_pred             ------hh-----hhcccHHHHhcCCCCcEEEEcC
Q 027408          105 ------KT-----RGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       105 ------~t-----~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                            +.     ..-++.+.++.+|++++|..+.
T Consensus       226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence                  11     2457888888889998887764

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=97.78  E-value=8.1e-05  Score=63.92  Aligned_cols=61  Identities=23%  Similarity=0.280  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccHHHH-HHHHHHccC-CCeE-EEEcCCCCChhHHHhhCCeecCCHHhhccc---CCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGK-LLLQRLKPF-NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~-~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~---aDvVv~~~p  101 (223)
                      .-.+|||||+|.||+ ..+..++.. +++| .++|++..      ..++..+.++++++++   .|+|++++|
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~------~~g~~~~~~~~~ll~~~~~vD~V~i~tp   90 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT------VEGVNSYTTIEAMLDAEPSIDAVSLCMP   90 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC------CTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh------hcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence            346899999999998 788888765 6775 47787653      2467777899999865   899999999

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.78  E-value=1.5e-05  Score=71.87  Aligned_cols=93  Identities=23%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccC-CCeEEEEcCCCCCh-hHHHhhCCee----c---CCHHhhcccCCEEEEcCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDP-QLEKETGAKF----E---EDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~-~~~~~~g~~~----~---~~l~e~l~~aDvVv~~~p  101 (223)
                      ...+.+++|+|+|.|.+|+.+++.|... |.+|.+++|+.... +.+...++..    .   .++.++++++|+|+.++|
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp   97 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIP   97 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSC
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCc
Confidence            4568899999999999999999999877 78999999975322 2222223321    1   245567789999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ....  .-+..   ..++.+..+++++
T Consensus        98 ~~~~--~~v~~---a~l~~g~~vvd~~  119 (467)
T 2axq_A           98 YTFH--PNVVK---SAIRTKTDVVTSS  119 (467)
T ss_dssp             GGGH--HHHHH---HHHHHTCEEEECS
T ss_pred             hhhh--HHHHH---HHHhcCCEEEEee
Confidence            4321  11112   2234566777764

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.78  E-value=1.5e-05  Score=71.52  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=48.5

Q ss_pred             CCCEEEEEcccHH--HHHHHHHHcc----CCCeEEEEcCCCCChhHHHh---------hCCeecCCHHhhcccCCEEEEc
Q 027408           35 EGKTVGTVGCGRI--GKLLLQRLKP----FNCNLLYHDRVKMDPQLEKE---------TGAKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        35 ~g~~igIiG~G~i--G~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~---------~g~~~~~~l~e~l~~aDvVv~~   99 (223)
                      ..+||+|||.|.+  |..++..+..    .| +|..||+.+...+....         ..+...+++++++++||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4579999999996  6788877753    36 99999997522221111         1244557899999999999999


Q ss_pred             CCC
Q 027408          100 TPL  102 (223)
Q Consensus       100 ~p~  102 (223)
                      ++.
T Consensus        83 irv   85 (450)
T 3fef_A           83 ILP   85 (450)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            963

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.76  E-value=6.1e-06  Score=68.40  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=69.6

Q ss_pred             HHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC-------------------Ch
Q 027408           13 GHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM-------------------DP   72 (223)
Q Consensus        13 ~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~-------------------~~   72 (223)
                      +.++++-..|....    ...|.+++|.|||+|.+|..+|+.|...|. +|.++|+...                   +.
T Consensus        12 y~Rq~~l~~~g~~~----q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka   87 (249)
T 1jw9_B           12 YNRQIILRGFDFDG----QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKV   87 (249)
T ss_dssp             THHHHTSTTTHHHH----HHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHH
T ss_pred             hhheecccccCHHH----HHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHH
Confidence            34555545575322    236899999999999999999999999997 7999998751                   11


Q ss_pred             hHH-Hhh-----CC--ee----c--CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 027408           73 QLE-KET-----GA--KF----E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus        73 ~~~-~~~-----g~--~~----~--~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      +.+ +.+     ++  ..    .  .+++++++++|+|+.+++ +.+++..+++...+.   +..+|+.
T Consensus        88 ~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B           88 ESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             HHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             HHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence            111 111     11  11    1  134567889999998886 566777776655543   3345554

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.74  E-value=4.3e-05  Score=66.39  Aligned_cols=91  Identities=15%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hhCCeec---CC---HHhhcccCCEEEEcCCCChhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~---~~---l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .|++|.|+|.|.||...++.++.+|++|+++++++...+.+. ++|...+   .+   +.++....|+|+.++.....  
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~--  264 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP--  264 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence            789999999999999999999999999999998765444444 6665321   22   23334568999998873321  


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                         ....++.|+++..+++++..
T Consensus       265 ---~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          265 ---LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             ---SHHHHHHEEEEEEEEECCCC
T ss_pred             ---HHHHHHHHhcCCEEEEEccC
Confidence               25677888998899988753

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.74  E-value=0.00033  Score=60.19  Aligned_cols=96  Identities=16%  Similarity=0.198  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCC-C-ChhH---H----HhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVK-M-DPQL---E----KETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~-~-~~~~---~----~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|.+|+++|=|  ++.++++..+..+|++|.+..|.. . ..+.   +    ++.|  +....+++++++++|+|...
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            5899999999985  999999999999999999999864 2 2222   1    1455  44578999999999999884


Q ss_pred             CCC-------Chh-----hhhcccHHHHhcC-CCCcEEEEcC
Q 027408          100 TPL-------TEK-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (223)
Q Consensus       100 ~p~-------~~~-----t~~~i~~~~~~~m-k~ga~ivn~s  128 (223)
                      .=.       .++     ...-++.+.++.+ |++++|..+.
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            321       011     1345788999999 8899988774

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.74  E-value=3.1e-05  Score=67.28  Aligned_cols=66  Identities=12%  Similarity=0.093  Sum_probs=50.2

Q ss_pred             CCEEEEEcccHHHH-HHHHHHccCCCeE-EEEcCCCCC-hhHHHhhC-CeecCCHHhhccc--CCEEEEcCC
Q 027408           36 GKTVGTVGCGRIGK-LLLQRLKPFNCNL-LYHDRVKMD-PQLEKETG-AKFEEDLDTMLPK--CDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG~G~iG~-~iA~~l~~~G~~V-~~~d~~~~~-~~~~~~~g-~~~~~~l~e~l~~--aDvVv~~~p  101 (223)
                      -.+|||||+|.+|. .++..++.-++++ .++|+++.. .+.+++++ ...++++++++++  .|+|++++|
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp   97 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAV   97 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCC
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence            46899999999995 5677777678885 478887532 33455666 4567899999975  899999999

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.73  E-value=2.1e-05  Score=70.23  Aligned_cols=65  Identities=14%  Similarity=0.094  Sum_probs=51.4

Q ss_pred             CEEEEEcc----cHHHHHHHHHHccC--CCeE-EEEcCCCCC-hhHHHhhCCe---ecCCHHhhcc--cCCEEEEcCC
Q 027408           37 KTVGTVGC----GRIGKLLLQRLKPF--NCNL-LYHDRVKMD-PQLEKETGAK---FEEDLDTMLP--KCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~----G~iG~~iA~~l~~~--G~~V-~~~d~~~~~-~~~~~~~g~~---~~~~l~e~l~--~aDvVv~~~p  101 (223)
                      .+|||||+    |.||+..++.++..  ++++ .++|+++.. .+.++.+++.   .+.++++++.  +.|+|++|+|
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp   98 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ   98 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence            58999999    99999999999876  6775 588886532 2344556664   6789999996  6899999999

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.72  E-value=4.5e-05  Score=65.28  Aligned_cols=67  Identities=15%  Similarity=0.106  Sum_probs=46.1

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhH-HHhh---------CCeecCCHHhhcccCCEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET---------GAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~-~~~~---------g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      -++|+|||.|.||.++|..++..|.  +|..+|+++...+. ...+         ......+..+.+++||+|+++.|.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~   84 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA   84 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCC
Confidence            4699999999999999999976664  79999987521111 1110         111112345678999999999764

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.72  E-value=3e-05  Score=62.97  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=44.0

Q ss_pred             CCEEEEEcccHHHHHHHHH--HccCCCeE-EEEcCCCCChh-HHHhhCCeecCCHHhhcccCCEEEEcCC
Q 027408           36 GKTVGTVGCGRIGKLLLQR--LKPFNCNL-LYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~--l~~~G~~V-~~~d~~~~~~~-~~~~~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ..+|+|||+|.+|+.+++.  ....|+++ .++|.++.... ......+...+++++++++.|+|++|+|
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvP  154 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVP  154 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSC
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecC
Confidence            4679999999999999995  34567875 47887663322 1222233446789999977799999999

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=97.72  E-value=0.00037  Score=59.76  Aligned_cols=96  Identities=10%  Similarity=0.091  Sum_probs=71.1

Q ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH-------HHhhC--CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL-------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|.+|++|| .+++.++++..+..+|++|.+..|... .. +.       ++..|  +....+++++++++|+|+...
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence            58999999999 589999999999999999999998642 22 21       12234  455689999999999998754


Q ss_pred             CCCh----------h--hhhcccHHHHhcCCCCcEEEEcC
Q 027408          101 PLTE----------K--TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       101 p~~~----------~--t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      =-..          +  ...-++.+.++.+|++++|..+.
T Consensus       234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            2110          0  12357888889899999888764

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.71  E-value=8.3e-05  Score=62.92  Aligned_cols=105  Identities=14%  Similarity=0.151  Sum_probs=70.9

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeE-EEEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhccc
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .++|+|+|+ |++|+.+++.++..|+++ ..++|.....   ...|+..+.+++++.+  .+|++++++|  ++...-+-
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~---~i~G~~vy~sl~el~~~~~~Dv~Ii~vp--~~~~~~~~   81 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM---EVLGVPVYDTVKEAVAHHEVDASIIFVP--APAAADAA   81 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHHHHSCCSEEEECCC--HHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc---eECCEEeeCCHHHHhhcCCCCEEEEecC--HHHHHHHH
Confidence            568999998 999999999998889984 3667653111   1357777789999988  8999999999  33322222


Q ss_pred             HHHHhcCCCCcE-EEEcCCCCc-cCHHHHHHHHHhCCcc
Q 027408          112 KDRIAKMKKGVL-IVNNARGAI-MDTQAVVDACSSGHIA  148 (223)
Q Consensus       112 ~~~~~~mk~ga~-ivn~srg~~-vd~~al~~~L~~g~i~  148 (223)
                      ++..+   .|.- +|..+.|-. .+++.+.++.++..+.
T Consensus        82 ~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           82 LEAAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            33333   2332 555665532 3455788887776664

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.71  E-value=0.00015  Score=64.69  Aligned_cols=110  Identities=14%  Similarity=0.222  Sum_probs=74.3

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEc--------CCCCChhH------------------HHhhCCeecC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHD--------RVKMDPQL------------------EKETGAKFEE   84 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d--------~~~~~~~~------------------~~~~g~~~~~   84 (223)
                      +.+|.|+||+|-|+|++|...|+.|...|.+|++++        +.....+.                  ....+...+ 
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~-  308 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL-  308 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE-
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe-
Confidence            457899999999999999999999999999987543        33222211                  112234333 


Q ss_pred             CHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCCCC--cEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG--VLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        85 ~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~g--a~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +.++++ -+||+.+-|.-     .+.|+.+..+.++..  .++++.+.+.+ ..++ .+.|.+..|.
T Consensus       309 ~~~~i~~~~~DI~iPcAl-----~~~I~~~~a~~L~a~g~k~IaEgAN~p~-t~eA-~~iL~~rGIl  368 (450)
T 4fcc_A          309 EGQQPWSVPVDIALPCAT-----QNELDVDAAHQLIANGVKAVAEGANMPT-TIEA-TELFQQAGVL  368 (450)
T ss_dssp             ETCCGGGSCCSEEEECSC-----TTCBCHHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cCcccccCCccEEeeccc-----cccccHHHHHHHHhcCceEEecCCCCCC-CHHH-HHHHHHCCCE
Confidence            223333 46999988875     567888888888643  46777776664 4444 3567776666

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.70  E-value=0.0001  Score=62.59  Aligned_cols=96  Identities=22%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh---h--C--CeecCCHHhhcccCCEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE---T--G--AKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~---~--g--~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ++|+|||.|.+|.++|..+...|.  +|..||+++...+     ....   +  .  +....+ .+.+++||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            589999999999999999987777  8999999752221     1111   1  1  222345 7889999999998753


Q ss_pred             C--h-hhh-hcc--c----H---HHHhcCCCCcEEEEcCCCCccCH
Q 027408          103 T--E-KTR-GMF--D----K---DRIAKMKKGVLIVNNARGAIMDT  135 (223)
Q Consensus       103 ~--~-~t~-~~i--~----~---~~~~~mk~ga~ivn~srg~~vd~  135 (223)
                      .  | .++ .++  |    +   +.+....|++++++++  ..+|.
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~  123 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDV  123 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchH
Confidence            2  1 111 111  1    1   2334447899999998  34444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.68  E-value=9.9e-05  Score=59.57  Aligned_cols=73  Identities=25%  Similarity=0.288  Sum_probs=52.5

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC-eec-----CCHHhhcccCCEEEEcCCCC
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-KFE-----EDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-~~~-----~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ...+.||+|.|.|. |.||+.+++.|...|++|++++|++...+.....++ ..+     .++.+.+..+|+|+.+....
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            45789999999997 999999999999999999999997643333333344 221     45677888999999887643

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.67  E-value=0.00021  Score=61.61  Aligned_cols=96  Identities=11%  Similarity=0.108  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCC--ChhH---H----HhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL---E----KETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~---~----~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .|.|.+|+++|=|  +++++++..+..+|++|.+..|...  ..+.   +    +..|  +....+++++++++|+|...
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            5889999999985  9999999999999999999998642  2222   1    1445  44568999999999999884


Q ss_pred             CCC--------Chh-----hhhcccHHHHhcC-CCCcEEEEcC
Q 027408          100 TPL--------TEK-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (223)
Q Consensus       100 ~p~--------~~~-----t~~~i~~~~~~~m-k~ga~ivn~s  128 (223)
                      .=.        ..+     ...-++.+.++.+ |++++|..+.
T Consensus       232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence            320        011     1245788999999 9999998874

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.66  E-value=0.00012  Score=62.38  Aligned_cols=64  Identities=19%  Similarity=0.267  Sum_probs=47.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHh-------h--C--CeecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE-------T--G--AKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~-------~--g--~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ++|+|||.|.+|..+|..+...|. +|..+|+++...+. ..+       .  .  +....+. +.+++||+|+++.+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g   79 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSG   79 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCC
Confidence            589999999999999999988886 89999987532221 111       0  1  2222566 67899999999975

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.66  E-value=7e-05  Score=64.09  Aligned_cols=87  Identities=14%  Similarity=0.127  Sum_probs=57.4

Q ss_pred             CEEEEEcccHHHHHHHHHHcc--CCCe-EEEEcCCCCC--hhHHHhhCCee-cCCHHhhcc-----cCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP--FNCN-LLYHDRVKMD--PQLEKETGAKF-EEDLDTMLP-----KCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~--~G~~-V~~~d~~~~~--~~~~~~~g~~~-~~~l~e~l~-----~aDvVv~~~p~~~~  105 (223)
                      .+|||||+|.||+.+++.+..  -+.+ +.++|+++..  .+.++.+++.. .++.+++++     +.|+|+.++|  ..
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp--~~   82 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS--AS   82 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC--HH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC--hH
Confidence            489999999999999999843  4666 4578887654  34556677652 456777753     5899999999  33


Q ss_pred             hhhcccHHHHhcCCCCcEEEE
Q 027408          106 TRGMFDKDRIAKMKKGVLIVN  126 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn  126 (223)
                      ...-+....++. ++|..+++
T Consensus        83 ~h~~~a~~al~a-~~Gk~Vi~  102 (312)
T 1nvm_B           83 AHVQNEALLRQA-KPGIRLID  102 (312)
T ss_dssp             HHHHHHHHHHHH-CTTCEEEE
T ss_pred             HHHHHHHHHHHh-CCCCEEEE
Confidence            222222222221 23777777

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.66  E-value=6.4e-05  Score=65.47  Aligned_cols=91  Identities=16%  Similarity=0.230  Sum_probs=69.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec---CC---HHhhcccCCEEEEcCCCChhhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~---l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++...+.++++|...+   .+   .+++....|+|+.++....    
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~----  269 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH----  269 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH----
Confidence            5899999999999999999999999999999987766677777886432   12   2233356899998887321    


Q ss_pred             cccHHHHhcCCCCcEEEEcCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg  130 (223)
                       .....++.++++..++.++..
T Consensus       270 -~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          270 -NLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             -CHHHHHTTEEEEEEEEECCCC
T ss_pred             -HHHHHHHHhccCCEEEEeccC
Confidence             125677888999899888753

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.65  E-value=7.6e-05  Score=63.96  Aligned_cols=113  Identities=18%  Similarity=0.201  Sum_probs=64.8

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhh--C------CeecCCHHhhcccCCEEEEcCCCCh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--G------AKFEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~--g------~~~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      .++|+|||.|.+|..++..+...|.  +|..+|.+....+ ...++  .      +....+..+.+++||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4689999999999999999988777  8999998753221 12211  1      1111123566899999999987422


Q ss_pred             hhhhc---------------ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCccEE
Q 027408          105 KTRGM---------------FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  150 (223)
Q Consensus       105 ~t~~~---------------i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~--L~~g~i~~a  150 (223)
                      . .+.               +.+. +....|++++++++..-=+....+.+.  +...++.|.
T Consensus        87 k-~g~~r~dl~~~n~~i~~~i~~~-i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           87 K-PGETRLDLAKKNVMIAKEVTQN-IMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHH-HHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             C-CCcCHHHHHHhhHHHHHHHHHH-HHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEecc
Confidence            1 111               1122 222368999999754322223333333  233466665

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.65  E-value=0.00019  Score=62.27  Aligned_cols=91  Identities=16%  Similarity=0.113  Sum_probs=68.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-------CCHHhhcc-----cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~e~l~-----~aDvVv~~~p  101 (223)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|...+       .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            58999999999999999999999999 79999988766677777876422       12333332     4899999886


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNARG  130 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~srg  130 (223)
                      ..+     .....++.++++ ..++.++-.
T Consensus       272 ~~~-----~~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          272 NVG-----VMRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             CHH-----HHHHHHHTBCTTTCEEEECSCC
T ss_pred             CHH-----HHHHHHHHhhcCCcEEEEEcCC
Confidence            311     125778889998 888888643

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=97.65  E-value=0.00042  Score=59.09  Aligned_cols=96  Identities=14%  Similarity=0.106  Sum_probs=71.1

Q ss_pred             CCC-CCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCC-Ch-hHH---H----hhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLE-GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-DP-QLE---K----ETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~-g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~~---~----~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+. |.+|++|| .+++.++++..+..+|++|.+..|... .. +..   +    ..|  +....++++.++++|+|...
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            578 99999999 578999999999999999999998642 22 221   1    334  34567999999999999876


Q ss_pred             CC--CCh--h--------hhhcccHHHHhcCCCCcEEEEcC
Q 027408          100 TP--LTE--K--------TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       100 ~p--~~~--~--------t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .=  -..  +        ...-++.+.++.+|++++|..+.
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~l  262 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCL  262 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            51  111  0        12447888888888888888775

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.64  E-value=0.00019  Score=62.40  Aligned_cols=90  Identities=17%  Similarity=0.107  Sum_probs=67.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-------CCHHhhcc-----cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~e~l~-----~aDvVv~~~p  101 (223)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|...+       .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            58999999999999999999999999 79999987766677777776422       12333332     4799998887


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr  129 (223)
                      .. .    .....++.++++ ..++.++-
T Consensus       271 ~~-~----~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          271 RL-D----TMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CH-H----HHHHHHHHBCTTTCEEEECSC
T ss_pred             CH-H----HHHHHHHHhhcCCcEEEEecc
Confidence            21 1    125677888998 88888764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.64  E-value=0.00018  Score=62.42  Aligned_cols=90  Identities=17%  Similarity=0.063  Sum_probs=68.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-------CCHHhhcc-----cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~e~l~-----~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 79999988766777778886432       12333332     5899999886


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr  129 (223)
                      . +.+    -...++.++++ ..++.++-
T Consensus       271 ~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 R-IET----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             C-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             C-HHH----HHHHHHHHhcCCCEEEEEcc
Confidence            2 111    25778889998 88888864

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=97.64  E-value=0.00013  Score=63.56  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=56.6

Q ss_pred             CEEEEEc-ccHHHHH-HH----HHHccCC-CeE----------EEEcCCCC-ChhHHHhhCCe-ecCCHHhhccc--CCE
Q 027408           37 KTVGTVG-CGRIGKL-LL----QRLKPFN-CNL----------LYHDRVKM-DPQLEKETGAK-FEEDLDTMLPK--CDI   95 (223)
Q Consensus        37 ~~igIiG-~G~iG~~-iA----~~l~~~G-~~V----------~~~d~~~~-~~~~~~~~g~~-~~~~l~e~l~~--aDv   95 (223)
                      .+||||| +|.||+. .+    +.++..+ ..+          .++|+++. ..+.++++++. .++++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4799999 9999998 66    6665443 222          48888763 33445667874 66899999965  899


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEE
Q 027408           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      |++++|.....     +-....++.|..++
T Consensus        87 V~i~tp~~~h~-----~~~~~al~~Gk~V~  111 (383)
T 3oqb_A           87 FFDAATTQARP-----GLLTQAINAGKHVY  111 (383)
T ss_dssp             EEECSCSSSSH-----HHHHHHHTTTCEEE
T ss_pred             EEECCCchHHH-----HHHHHHHHCCCeEE
Confidence            99999943222     33344455555544

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.64  E-value=0.00021  Score=62.10  Aligned_cols=90  Identities=14%  Similarity=0.041  Sum_probs=68.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-------CCHHhhcc-----cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~e~l~-----~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            58999999999999999999999999 79999988766677777886432       12333332     4899998886


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr  129 (223)
                      . +.    .-...++.++++ ..++.++-
T Consensus       275 ~-~~----~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 T-AQ----TLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             C-HH----HHHHHHHTBCTTTCEEEECCC
T ss_pred             C-HH----HHHHHHHHhhcCCCEEEEECC
Confidence            2 11    125778889998 88888764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.63  E-value=6.4e-05  Score=65.09  Aligned_cols=93  Identities=24%  Similarity=0.179  Sum_probs=69.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecC------CHHhhc-ccCCEEEEcCCCChhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE------DLDTML-PKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~------~l~e~l-~~aDvVv~~~p~~~~t~  107 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++...+.++++|...+-      ++.+.+ ...|+|+.++..++   
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~---  255 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT---  255 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc---
Confidence            58999999999999999999999999999999887777777788864321      232323 46899999987410   


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      ...-...++.++++..++.++..
T Consensus       256 ~~~~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          256 DIDFNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             TCCTTTGGGGEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCEEEEecCC
Confidence            01124556788888888888653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.62  E-value=3.7e-05  Score=68.98  Aligned_cols=69  Identities=22%  Similarity=0.220  Sum_probs=49.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhhC-Ce----ecC---CHHhhcccCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETG-AK----FEE---DLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g-~~----~~~---~l~e~l~~aDvVv~~~p~~  103 (223)
                      .+++|+|+|.|.||+.+++.|...|.+|.+++|+....+ .+..++ +.    ...   +++++++++|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            478999999999999999999999999999998642111 111121 11    122   4557788999999999853

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.60  E-value=4.2e-05  Score=66.36  Aligned_cols=93  Identities=17%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC---CChhHHHhhCCeecC--CHHhhc----ccCCEEEEcCCCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK---MDPQLEKETGAKFEE--DLDTML----PKCDIVVVNTPLT  103 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~---~~~~~~~~~g~~~~~--~l~e~l----~~aDvVv~~~p~~  103 (223)
                      .+.|++|.|+|.|.+|..+++.++.+|++|++.+++.   ...+.++++|+..++  ++.+.+    ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            4679999999999999999999999999999999876   445566677765431  111111    3589999888733


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +..   + ...++.|+++..+++++.
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            221   0 566788888888888864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.60  E-value=0.00018  Score=61.79  Aligned_cols=96  Identities=16%  Similarity=0.276  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh-----hC--CeecCCHHhhcccCCEEEEcC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE-----TG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~-----~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      ...++|+|||.|.+|..+|..+...|+ +|..+|+++...+     ....     ..  +....+. +.+++||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            456799999999999999999988887 9999999764321     1111     12  2223455 7889999999997


Q ss_pred             CCC--hh-hh-hcc--c----HH---HHhcCCCCcEEEEcCCC
Q 027408          101 PLT--EK-TR-GMF--D----KD---RIAKMKKGVLIVNNARG  130 (223)
Q Consensus       101 p~~--~~-t~-~~i--~----~~---~~~~mk~ga~ivn~srg  130 (223)
                      +..  +. ++ .++  |    ++   .+....|++++++++..
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP  126 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP  126 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence            521  11 11 011  1    11   22223588999999853

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=97.60  E-value=0.0002  Score=61.01  Aligned_cols=93  Identities=18%  Similarity=0.277  Sum_probs=69.7

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCCh-----
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE-----  104 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~-----  104 (223)
                      .+.|.+|++||-   +++.++++..+..+|++|.+..|.....+. ...|  ...+++++++++|+|....--.+     
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~-~~~g--~~~d~~eav~~aDvvyt~~~q~er~~~~  220 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEE-NTFG--TYVSMDEAVESSDVVMLLRIQNERHQSA  220 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT-CSSC--EECCHHHHHHHCSEEEECCCCTTTCCSS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcch-hhcC--ccCCHHHHhCCCCEEEeccchhhccccc
Confidence            589999999996   479999999999999999999885422221 2223  34689999999999987532111     


Q ss_pred             ----h--hhhcccHHHHhcCCCCcEEEEcC
Q 027408          105 ----K--TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       105 ----~--t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                          +  ...-++.+.++.+|++++|..+.
T Consensus       221 ~~~~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          221 VSQEGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             CCSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             hhHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence                1  13457899999999999998774

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=97.60  E-value=0.00016  Score=61.66  Aligned_cols=96  Identities=19%  Similarity=0.282  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCCC-Chh-H---HHhhCC--eecCCHHhhcccCCEEEEcCCC
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ-L---EKETGA--KFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~-~---~~~~g~--~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      .+.|.+|++||=   |++.++++..+..+|++|.+..|... ..+ .   +++.|.  ....+++++++++|+|....=-
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ  231 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            589999999997   59999999999999999999998642 222 2   223343  3457899999999999885531


Q ss_pred             C------hhh-----hhcccHHHHhcCCCCcEEEEcC
Q 027408          103 T------EKT-----RGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       103 ~------~~t-----~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .      ++.     ..-++.+.++.+|++++|..+.
T Consensus       232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            1      111     2345667777777777776653

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.60  E-value=0.00023  Score=60.97  Aligned_cols=93  Identities=12%  Similarity=0.203  Sum_probs=59.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh-----hCCeec-CCHHhhcccCCEEEEcCCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE-----TGAKFE-EDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~-----~g~~~~-~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ++|+|||.|.||..+|..+...|.  +|..+|+++...+     +...     ...... ++..+.+++||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            589999999999999999987676  8999999763221     1110     122221 24567889999999997632


Q ss_pred             hh-----------hhhccc--HHHHhcCCCCcEEEEcCC
Q 027408          104 EK-----------TRGMFD--KDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~-----------t~~~i~--~~~~~~mk~ga~ivn~sr  129 (223)
                      ..           +..++.  .+.+....|++++++++.
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            11           111110  123334468899999985

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=97.59  E-value=0.00044  Score=60.23  Aligned_cols=97  Identities=13%  Similarity=0.131  Sum_probs=71.6

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCCC----hhH-------HHhhC--CeecCCHHhhcccCCEEE
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMD----PQL-------EKETG--AKFEEDLDTMLPKCDIVV   97 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~~----~~~-------~~~~g--~~~~~~l~e~l~~aDvVv   97 (223)
                      .+.|++|++||=+  +++.+++..+..+|++|.+..|....    .+.       +++.|  +....+++++++++|+|.
T Consensus       177 ~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVy  256 (365)
T 4amu_A          177 NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIY  256 (365)
T ss_dssp             SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEE
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEE
Confidence            4899999999976  89999999999999999999986422    221       23345  345689999999999998


Q ss_pred             EcC----CCChh---------hhhcccHHHHhcCCCCcEEEEcCC
Q 027408           98 VNT----PLTEK---------TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        98 ~~~----p~~~~---------t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .-+    ....+         ...-++.+.++.+|++++|..+.-
T Consensus       257 td~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP  301 (365)
T 4amu_A          257 TDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLP  301 (365)
T ss_dssp             ECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSC
T ss_pred             ecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCC
Confidence            742    11111         023478888888888888888753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.59  E-value=0.0002  Score=62.05  Aligned_cols=90  Identities=18%  Similarity=0.123  Sum_probs=68.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-------CCHHhhcc-----cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~e~l~-----~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|...+       .++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 79999987766677777886422       12333332     4899998886


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr  129 (223)
                      ..+     .....++.++++ ..++.++-
T Consensus       270 ~~~-----~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVK-----VMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CHH-----HHHHHHHTBCTTTCEEEECSC
T ss_pred             cHH-----HHHHHHHhhccCCcEEEEEec
Confidence            211     126778889998 88888764

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=97.58  E-value=0.00017  Score=61.85  Aligned_cols=64  Identities=25%  Similarity=0.226  Sum_probs=47.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEE-EEcCCC-CChhHH----HhhCC--eecCCHHhhccc--CCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK-MDPQLE----KETGA--KFEEDLDTMLPK--CDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~~-~~~~~~----~~~g~--~~~~~l~e~l~~--aDvVv~~~p  101 (223)
                      .+|||||+|.+|+..++.+ .-+.+|. ++|+++ ...+.+    +++++  ..++++++++++  .|+|++++|
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp   76 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTV   76 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSS
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence            4899999999999887777 5577755 688765 233222    22354  567899999964  899999999

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.58  E-value=0.00019  Score=62.43  Aligned_cols=90  Identities=14%  Similarity=0.100  Sum_probs=68.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-------CCHHhhcc-----cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~e~l~-----~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++...+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            58899999999999999999999999 79999988877778888886432       22333222     4899998887


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~sr  129 (223)
                      .. .    .-...++.++++ ..++.++-
T Consensus       273 ~~-~----~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          273 NV-S----VMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CH-H----HHHHHHHTBCTTTCEEEECSC
T ss_pred             CH-H----HHHHHHHHhhccCCEEEEEcc
Confidence            21 1    126778889986 88887764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.57  E-value=0.00017  Score=62.04  Aligned_cols=95  Identities=17%  Similarity=0.128  Sum_probs=60.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh-----hCCeecCCHHhhcccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE-----TGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~-----~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ..++|+|||.|.||.++|..+...|.  +|..+|++....+     +...     .++...++..+.+++||+|+++.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            35799999999999999999987776  8999998642111     1111     1222222334678899999998753


Q ss_pred             --Chh-hh-hcc--c----H---HHHhcCCCCcEEEEcCC
Q 027408          103 --TEK-TR-GMF--D----K---DRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 --~~~-t~-~~i--~----~---~~~~~mk~ga~ivn~sr  129 (223)
                        .|. ++ .++  |    +   +.+....|++++++++.
T Consensus        84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence              111 11 111  1    1   22333467899999984

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=97.57  E-value=0.0002  Score=61.71  Aligned_cols=96  Identities=13%  Similarity=0.158  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCC-C-ChhH-------HHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVK-M-DPQL-------EKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~-~-~~~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .|.|.+|++||=|  +++++++..+..+|++|.+..|.. . ..+.       ++..|  +....+++++++++|+|...
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            5889999999985  999999999999999999999864 2 2222       11445  44568999999999999884


Q ss_pred             CCC-----Ch---h-----hhhcccHHHHhcC-CCCcEEEEcC
Q 027408          100 TPL-----TE---K-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (223)
Q Consensus       100 ~p~-----~~---~-----t~~~i~~~~~~~m-k~ga~ivn~s  128 (223)
                      .=.     .+   +     ...-++.+.++.+ |++++|..+.
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC
Confidence            320     11   1     1245788999999 9999998875

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=97.56  E-value=0.00051  Score=59.30  Aligned_cols=95  Identities=12%  Similarity=0.072  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH-------HHhhC--CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL-------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|.+|++|| .+++.++++..+..+|++|.+..|... .. +.       ++..|  +....+++ +++++|+|..-+
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence            58999999999 489999999999999999999998642 22 21       12345  34567899 999999998633


Q ss_pred             --C--C-C---hh----h--hhcccHHHHhcCCCCcEEEEcC
Q 027408          101 --P--L-T---EK----T--RGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       101 --p--~-~---~~----t--~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                        +  . .   ++    .  ..-++.+.++.+|++++|..+.
T Consensus       251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence              1  0 0   11    1  1446777777778888777664

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.56  E-value=0.00018  Score=62.04  Aligned_cols=67  Identities=28%  Similarity=0.327  Sum_probs=47.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCCh-hHHHhhCC------------------eecCCHHhhcccCCE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDP-QLEKETGA------------------KFEEDLDTMLPKCDI   95 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~-~~~~~~g~------------------~~~~~l~e~l~~aDv   95 (223)
                      .+|||+|+|.||+.+++.+... ++++. +.|+++... ..++..|+                  ....+.++++.++|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            3899999999999999999765 56754 566653222 22233332                  233578888889999


Q ss_pred             EEEcCCCC
Q 027408           96 VVVNTPLT  103 (223)
Q Consensus        96 Vv~~~p~~  103 (223)
                      |+.|+|..
T Consensus        83 V~~aTp~~   90 (334)
T 2czc_A           83 IVDATPGG   90 (334)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCcc
Confidence            99999944

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.54  E-value=9.1e-05  Score=63.41  Aligned_cols=116  Identities=16%  Similarity=0.134  Sum_probs=67.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhH-HHh---------hCCeecCCHHhhcccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKE---------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~-~~~---------~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ..++|+|||.|.+|.+++..+...|.  +|..+|.++...+. +..         ..+....+..+.+++||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            45799999999999999999876664  79999986421111 111         1112112446778999999999864


Q ss_pred             Chhh---h--------hccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCccEE
Q 027408          103 TEKT---R--------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  150 (223)
Q Consensus       103 ~~~t---~--------~~i~--~~~~~~mk~ga~ivn~srg~~vd~~al~~~--L~~g~i~~a  150 (223)
                      ....   +        .++.  .+.+....|++++++++..-=+....+.+.  +...++.|.
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEec
Confidence            2211   0        1110  122233378999999763322223333333  233356555

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.54  E-value=0.00018  Score=60.80  Aligned_cols=90  Identities=13%  Similarity=0.162  Sum_probs=61.1

Q ss_pred             CEEEEEc-ccHHHHHHHHHHcc-CCCeEE-EEcCCCCCh---hHH-----HhhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP---QLE-----KETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~---~~~-----~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .+|+|+| +|+||+.+++.+.. -++++. ++|++....   +..     ...|+...+++++++.++|+|+-.++  |+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~--p~   99 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ--PQ   99 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--HH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--HH
Confidence            5899999 99999999999864 578854 668754210   111     12456667899999999999998776  33


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      .   ........++.|.-+|..+.|-
T Consensus       100 a---~~~~~~~~l~~Gv~vViGTTG~  122 (288)
T 3ijp_A          100 A---SVLYANYAAQKSLIHIIGTTGF  122 (288)
T ss_dssp             H---HHHHHHHHHHHTCEEEECCCCC
T ss_pred             H---HHHHHHHHHHcCCCEEEECCCC
Confidence            2   1223333455677777777773

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.54  E-value=0.00018  Score=62.21  Aligned_cols=66  Identities=21%  Similarity=0.303  Sum_probs=43.5

Q ss_pred             EEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCCh-hHHHhhCCeec-----------------CCHHhhcccCCEEE
Q 027408           38 TVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDP-QLEKETGAKFE-----------------EDLDTMLPKCDIVV   97 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~-~~~~~~g~~~~-----------------~~l~e~l~~aDvVv   97 (223)
                      +|||+|+|.||+.+++.+... ++++. +.|++.... ..+...++..+                 .++++++.++|+|+
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~   82 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence            799999999999999999765 56765 556543211 22222233222                 24445566899999


Q ss_pred             EcCCCC
Q 027408           98 VNTPLT  103 (223)
Q Consensus        98 ~~~p~~  103 (223)
                      .|+|..
T Consensus        83 ~aTp~~   88 (340)
T 1b7g_O           83 DTTPNG   88 (340)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            999943

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=97.52  E-value=0.00077  Score=58.48  Aligned_cols=96  Identities=11%  Similarity=0.107  Sum_probs=67.3

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC--ChhHHH---hh--------CCeecCCHHhhcccCCEEEE
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM--DPQLEK---ET--------GAKFEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~~~---~~--------g~~~~~~l~e~l~~aDvVv~   98 (223)
                      .|.|.+|++||= -++.++++..+..+|++|.+..|...  +.+..+   +.        ++....+++|+++++|+|+.
T Consensus       185 ~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvyt  264 (353)
T 3sds_A          185 GLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVT  264 (353)
T ss_dssp             SCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEe
Confidence            479999999995 57899999999999999999998652  222211   11        34556799999999999987


Q ss_pred             cC--CCChh----------hhhcccHHHHhc--CCCCcEEEEcC
Q 027408           99 NT--PLTEK----------TRGMFDKDRIAK--MKKGVLIVNNA  128 (223)
Q Consensus        99 ~~--p~~~~----------t~~~i~~~~~~~--mk~ga~ivn~s  128 (223)
                      -+  +...+          ....++.+.++.  +|++++|..+.
T Consensus       265 d~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          265 DTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             CCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             CCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            43  21111          113467777777  77777777663

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=97.52  E-value=0.00045  Score=58.98  Aligned_cols=96  Identities=19%  Similarity=0.308  Sum_probs=67.9

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccC-CCeEEEEcCCCC-Chh-H---HHhhCC--eecCCHHhhcccCCEEEEcCC
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM-DPQ-L---EKETGA--KFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~-G~~V~~~d~~~~-~~~-~---~~~~g~--~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .+.|.+|+++|=   |++.++++..+..+ |++|.+..|... ..+ .   +++.|.  ....+++++++++|+|....=
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            589999999997   59999999999999 999999998642 222 2   223353  356799999999999987643


Q ss_pred             CCh-----hh-----hhcccHHHHhcCCCCcEEEEcC
Q 027408          102 LTE-----KT-----RGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       102 ~~~-----~t-----~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      -.+     +.     ..-++.+.++.+|++++|..+.
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            111     10     2345677777777777777653

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=97.52  E-value=0.00018  Score=65.08  Aligned_cols=115  Identities=16%  Similarity=0.169  Sum_probs=70.8

Q ss_pred             CCEEEEEcccHH--HHHHHHHHc---cC-CCeEEEEcCCCCChhHH----H----hh----CCeecCCHHhhcccCCEEE
Q 027408           36 GKTVGTVGCGRI--GKLLLQRLK---PF-NCNLLYHDRVKMDPQLE----K----ET----GAKFEEDLDTMLPKCDIVV   97 (223)
Q Consensus        36 g~~igIiG~G~i--G~~iA~~l~---~~-G~~V~~~d~~~~~~~~~----~----~~----g~~~~~~l~e~l~~aDvVv   97 (223)
                      .++|+|||.|.+  |.++|..+.   ++ |.+|..||+++...+..    .    ..    .+...+++++.+++||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            468999999997  566666664   23 78999999975321111    1    11    1233468888899999999


Q ss_pred             EcCCCCh---------------------hhh-------hc--------ccH---HHHhcCCCCcEEEEcCCCCccCHHHH
Q 027408           98 VNTPLTE---------------------KTR-------GM--------FDK---DRIAKMKKGVLIVNNARGAIMDTQAV  138 (223)
Q Consensus        98 ~~~p~~~---------------------~t~-------~~--------i~~---~~~~~mk~ga~ivn~srg~~vd~~al  138 (223)
                      +++|...                     +|.       ++        +-.   +.+....|++++||++..--+-..++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9997310                     110       00        011   22333458999999987665555555


Q ss_pred             HHHHHhCCccEEE
Q 027408          139 VDACSSGHIAGYS  151 (223)
Q Consensus       139 ~~~L~~g~i~~a~  151 (223)
                      .+ +...++.|.+
T Consensus       163 ~k-~p~~rviG~c  174 (480)
T 1obb_A          163 TR-TVPIKAVGFC  174 (480)
T ss_dssp             HH-HSCSEEEEEC
T ss_pred             HH-CCCCcEEecC
Confidence            44 5555666553

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.52  E-value=0.0003  Score=60.56  Aligned_cols=91  Identities=16%  Similarity=0.218  Sum_probs=67.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec---C---C-HHhh---c-----ccCCEEEEc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E---D-LDTM---L-----PKCDIVVVN   99 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~---~-l~e~---l-----~~aDvVv~~   99 (223)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++...+.++++|...+   .   + .+++   .     ...|+|+.+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            5899999999999999999999999999999987655566677776321   1   1 1222   2     258999988


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      +...+     .....++.++++..++.++.+
T Consensus       248 ~g~~~-----~~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNEK-----CITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCHH-----HHHHHHHHSCTTCEEEECSCC
T ss_pred             CCCHH-----HHHHHHHHHhcCCEEEEEecC
Confidence            87321     125677889999999988753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.51  E-value=8.8e-05  Score=63.83  Aligned_cols=90  Identities=17%  Similarity=0.205  Sum_probs=65.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p~  102 (223)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|...+     .++.+.+      ...|+|+.++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            78999999999999999999999999 89999987655556667775421     1232222      147999888872


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .+     .....++.++++..++.++.
T Consensus       247 ~~-----~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PK-----ALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HH-----HHHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHHhcCCEEEEEcc
Confidence            11     12566777888888888764

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=97.51  E-value=0.00034  Score=59.17  Aligned_cols=68  Identities=16%  Similarity=0.109  Sum_probs=56.1

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCC
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .+.|.+|+++|=   +++.++++..+..+|++|.+..|....+....+.|+....+++++++++|+|.. +-
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~  213 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LR  213 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eC
Confidence            589999999996   899999999999999999999986422221334577777899999999999988 54

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.50  E-value=0.00068  Score=60.48  Aligned_cols=109  Identities=16%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHH----HhhC-------CeecCCHHhhcc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE----KETG-------AKFEEDLDTMLP   91 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~----~~~g-------~~~~~~l~e~l~   91 (223)
                      +.++.|++|+|.|+|++|+..|+.|...|.+|+ +.|.+       ....+..    +..+       .... +.++++.
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~  308 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWG  308 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTT
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-Cchhhhc
Confidence            357899999999999999999999999999987 44542       1122211    1111       2233 4566663


Q ss_pred             -cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           92 -KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        92 -~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                       +||+++-|..     .+.++.+....++ -.+|+-.+.+.+ ..++ .+.|.+..+.
T Consensus       309 ~~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~-t~eA-~~iL~~~GI~  358 (440)
T 3aog_A          309 LPVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPT-TPAA-DDILLEKGVL  358 (440)
T ss_dssp             CCCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHHTCE
T ss_pred             CCCcEEEecCC-----cCccchhhHHHcC-CcEEEecCcccc-CHHH-HHHHHHCCCE
Confidence             7999999987     4456666666673 456666666664 4444 3556665555

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.49  E-value=0.00011  Score=62.00  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=64.8

Q ss_pred             CEEEEEcccHHHHHHHHHHcc----CCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP----FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~----~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~  109 (223)
                      .+|||||+|.||+..++.+..    -+.++. ++|++..    ++..++. ..+++++++  +.|+|++++|..  .+. 
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~----a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~--~H~-   79 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL----GSLDEVR-QISLEDALRSQEIDVAYICSESS--SHE-   79 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC----CEETTEE-BCCHHHHHHCSSEEEEEECSCGG--GHH-
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH----HHHcCCC-CCCHHHHhcCCCCCEEEEeCCcH--hHH-
Confidence            489999999999999998865    356654 6776532    2334555 369999986  689999999932  222 


Q ss_pred             ccHHHHhcCCCCcE-EEEcC-CCCccCHHHHHHHHHhCCcc
Q 027408          110 FDKDRIAKMKKGVL-IVNNA-RGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       110 i~~~~~~~mk~ga~-ivn~s-rg~~vd~~al~~~L~~g~i~  148 (223)
                        +.....++.|.. ++.-- .-.+-+.++|.++.++..+.
T Consensus        80 --~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           80 --DYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             --HHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence              334445556664 44421 11223345677766665544

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.49  E-value=0.0002  Score=64.01  Aligned_cols=108  Identities=16%  Similarity=0.261  Sum_probs=67.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeE-EEEcCCCCChhH-HHhh-C----------------------CeecCCHHhhc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQL-EKET-G----------------------AKFEEDLDTML   90 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V-~~~d~~~~~~~~-~~~~-g----------------------~~~~~~l~e~l   90 (223)
                      .+|||||+|.||+.+++.+... ++++ .++|++....+. +++. |                      ...++++++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            4799999999999999988754 6774 577886532222 2222 3                      33567999999


Q ss_pred             c--cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCC-ccCHHHHHHHHHhCCcc
Q 027408           91 P--KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA-IMDTQAVVDACSSGHIA  148 (223)
Q Consensus        91 ~--~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~-~vd~~al~~~L~~g~i~  148 (223)
                      .  +.|+|++++|.. .. +.  +-....++.|..++....+- ...-..|.++-++..+.
T Consensus       104 ~d~dIDaVviaTp~p-~~-H~--e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          104 SNPLIDVIIDATGIP-EV-GA--ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             TCTTCCEEEECSCCH-HH-HH--HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCEEEEcCCCh-HH-HH--HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            6  589999999832 21 11  34455667777777543211 11224566655555544

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.49  E-value=0.00012  Score=62.79  Aligned_cols=91  Identities=22%  Similarity=0.230  Sum_probs=67.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc----ccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----PKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l----~~aDvVv~~~p~~~~  105 (223)
                      .|++|.|+|.|.+|..+++.++..|++|++.++++...+.++++|....     .++.+.+    ...|+|+.++...+ 
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~-  242 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKP-  242 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHH-
Confidence            5889999999999999999999999999999987655556666775422     1222222    35899998886211 


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                          .....++.++++..++.++..
T Consensus       243 ----~~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          243 ----AFQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             ----HHHHHHHHEEEEEEEEECCCC
T ss_pred             ----HHHHHHHHhhcCCEEEEeccc
Confidence                125677888888888888754

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=97.49  E-value=0.0012  Score=58.50  Aligned_cols=109  Identities=20%  Similarity=0.274  Sum_probs=72.7

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHcc-CCCeEE-EEcCC-------CCChhHHH----hhC-------CeecCCHHhhc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRV-------KMDPQLEK----ETG-------AKFEEDLDTML   90 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~-~G~~V~-~~d~~-------~~~~~~~~----~~g-------~~~~~~l~e~l   90 (223)
                      +.++.|++|.|.|+|++|+..|+.|.. .|.+|+ +.|.+       ....+...    ..+       .... +.++++
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil  282 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELL  282 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-Cchhhh
Confidence            457899999999999999999999998 999987 44442       11222111    111       1223 456666


Q ss_pred             -ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           91 -PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        91 -~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                       .+||+++-|..     .+.++.+....++ -.+|+-.+.+.+ ..++ .+.|.+..+.
T Consensus       283 ~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          283 ELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPT-TPEA-DEILSRRGIL  333 (415)
T ss_dssp             TCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCccc-CHHH-HHHHHHCCCE
Confidence             47999999987     4567788888773 456666666664 5444 3556666665

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.48  E-value=7.7e-05  Score=64.31  Aligned_cols=94  Identities=16%  Similarity=0.183  Sum_probs=60.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh--h----CCeecCCHHhhcccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE--T----GAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~--~----g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ..++|+|||.|.||..+|..+...|+  +|..+|.+....+     +...  +    .+....++++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            57899999999999999999987776  8999998642111     1111  0    1122346665 899999999864


Q ss_pred             CCh---hhh-hcc--c----H---HHHhcCCCCcEEEEcCC
Q 027408          102 LTE---KTR-GMF--D----K---DRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       102 ~~~---~t~-~~i--~----~---~~~~~mk~ga~ivn~sr  129 (223)
                      ...   .++ .++  |    +   +.+....|++++++++.
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            211   011 111  1    1   12233378999999884

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.48  E-value=8.4e-05  Score=60.10  Aligned_cols=65  Identities=18%  Similarity=0.218  Sum_probs=46.3

Q ss_pred             CCEEEEEcccHHHHHHHHHH--ccCCCeE-EEEcCCCCChh-HHHhhCCeecCCHHhhcc-cCCEEEEcCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRL--KPFNCNL-LYHDRVKMDPQ-LEKETGAKFEEDLDTMLP-KCDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l--~~~G~~V-~~~d~~~~~~~-~~~~~g~~~~~~l~e~l~-~aDvVv~~~p  101 (223)
                      .++|+|||+|.+|+.+++.+  .. |+++ .++|.++.... ......+...++++++++ +.|+|++|+|
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~P  149 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP  149 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCC
Confidence            46899999999999999963  34 7874 47787653221 122223334678899886 5899999999

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=97.48  E-value=0.00084  Score=57.55  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC--ChhHHH-------hhC--CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM--DPQLEK-------ETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~~~-------~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|.+|++||= .++.++++..+..+|++|.+..|...  +.+..+       +.|  +....+++++++++|+|..-+
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~  231 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT  231 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEec
Confidence            589999999996 56999999999999999999998653  222211       234  455689999999999999843


Q ss_pred             ----CCChh--------hhhcccHHHHhcCCCCcEEEEcC
Q 027408          101 ----PLTEK--------TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       101 ----p~~~~--------t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                          ....+        ...-++.+.++.+|++++|..+.
T Consensus       232 w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          232 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             cccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence                21111        11446888888888888887763

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.48  E-value=0.00054  Score=58.74  Aligned_cols=66  Identities=23%  Similarity=0.260  Sum_probs=47.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh-----hCC--eecCCHHhhcccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE-----TGA--KFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~-----~g~--~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ..++|+|||.|.||.++|..+...|. +|..+|+++...+     +...     ...  ....+ .+.+++||+|+++.+
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG   82 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence            45799999999999999999987777 9999999764321     1110     112  22234 478899999999864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.47  E-value=0.0002  Score=61.82  Aligned_cols=91  Identities=21%  Similarity=0.192  Sum_probs=67.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-C-C---HHh----hc----ccCCEEEEcC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E-D---LDT----ML----PKCDIVVVNT  100 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~-~---l~e----~l----~~aDvVv~~~  100 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|...+ + +   .++    +.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            58899999999999999999999999 89999987655566777776421 1 1   122    11    2589999988


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      ... .    .....++.++++..++.++.+
T Consensus       251 g~~-~----~~~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          251 GAE-A----SIQAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CCH-H----HHHHHHHHSCTTCEEEECSCC
T ss_pred             CCh-H----HHHHHHHHhcCCCEEEEEecC
Confidence            722 1    125677889999999988753

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.47  E-value=0.0001  Score=63.46  Aligned_cols=94  Identities=16%  Similarity=0.099  Sum_probs=58.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhH-HHhh--------CCeecCCHHhhcccCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~-~~~~--------g~~~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ..+||+|||.|.+|.+++..+...+.  ++..+|......+. +.++        .+....+..+.+++||+|+++.+..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            34799999999999999999876665  79999986421111 1111        1112224467789999999998643


Q ss_pred             hhh-----------hhcccHH---HHhcCCCCcEEEEcCC
Q 027408          104 EKT-----------RGMFDKD---RIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t-----------~~~i~~~---~~~~mk~ga~ivn~sr  129 (223)
                      ...           ..++ .+   .+....|++.+++++.
T Consensus        88 ~k~g~~R~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~tN  126 (326)
T 2zqz_A           88 QKPGETRLDLVNKNLKIL-KSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             -----CHHHHHHHHHHHH-HHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEeCC
Confidence            211           0111 11   2222368899999844

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=97.47  E-value=0.00054  Score=59.51  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCC-C-ChhH-------HHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVK-M-DPQL-------EKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~-~-~~~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .|.|.+|+++|=|  +++++++..+..+|++|.+..|.. . ..+.       +++.|  +....+++++++++|+|...
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  252 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTD  252 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEc
Confidence            5899999999985  999999999999999999999864 2 2222       11445  45578999999999999884


Q ss_pred             CCC---C---hh-----hhhcccHHHHhcCC---CCcEEEEcCC
Q 027408          100 TPL---T---EK-----TRGMFDKDRIAKMK---KGVLIVNNAR  129 (223)
Q Consensus       100 ~p~---~---~~-----t~~~i~~~~~~~mk---~ga~ivn~sr  129 (223)
                      .=.   .   ++     ...-++.+.++.+|   ++++|..+.-
T Consensus       253 ~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          253 VWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             CSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             ccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence            420   0   11     13457888888888   8888888753

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=97.46  E-value=0.00066  Score=58.91  Aligned_cols=95  Identities=12%  Similarity=0.072  Sum_probs=69.3

Q ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH-------HHhhC--CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL-------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+.|.+|++|| .+++.++++..+..+|++|.+..|... .. +.       ++..|  +....+++ +++++|+|..-+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence            58899999999 589999999999999999999998642 22 21       12345  34567899 999999998633


Q ss_pred             ----CC---C-hh----h--hhcccHHHHhcCCCCcEEEEcC
Q 027408          101 ----PL---T-EK----T--RGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       101 ----p~---~-~~----t--~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                          ..   . ++    .  ..-++.+.++.+|++++|..+.
T Consensus       229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence                10   0 11    1  1456788888888888888775

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.46  E-value=0.00019  Score=60.26  Aligned_cols=91  Identities=19%  Similarity=0.312  Sum_probs=59.8

Q ss_pred             CCEEEEEc-ccHHHHHHHHHHcc-CCCeEE-EEcCCCCCh---hHHH----hhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           36 GKTVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP---QLEK----ETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        36 g~~igIiG-~G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~---~~~~----~~g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      -.+|+|+| +|+||+.+++.+.. -++++. ++|++....   +...    ..++...+++++++.++|+|+-+++  |+
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~--p~   84 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL--PE   84 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC--HH
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC--HH
Confidence            36899999 89999999998864 477866 478764211   0000    1155566899999999999998886  33


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ..   .......++.|.-+|..+.|-
T Consensus        85 a~---~~~~~~al~~G~~vVigTTG~  107 (272)
T 4f3y_A           85 GT---LVHLDAALRHDVKLVIGTTGF  107 (272)
T ss_dssp             HH---HHHHHHHHHHTCEEEECCCCC
T ss_pred             HH---HHHHHHHHHcCCCEEEECCCC
Confidence            21   122223345566677666663

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.45  E-value=0.00015  Score=61.06  Aligned_cols=88  Identities=15%  Similarity=0.122  Sum_probs=64.7

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecC------CHHhhcccCCEEEEcCCCChhhh
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE------DLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~------~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .|++|.|+|. |.+|..+++.++..|++|++.++++...+.++++|.....      ++.+.+...|+|+. +.. +   
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~---  199 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K---  199 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence            5889999998 9999999999999999999999876555666677764321      12233356899988 763 1   


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        .....++.++++..++.++.
T Consensus       200 --~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          200 --EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             --THHHHHTTEEEEEEEEEC--
T ss_pred             --HHHHHHHhhccCCEEEEEeC
Confidence              22677788888888888753

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.44  E-value=0.00036  Score=61.32  Aligned_cols=92  Identities=18%  Similarity=0.204  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p  101 (223)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|...+     .++.+.+      ...|+|+-++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g  291 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATG  291 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCC
Confidence            368999999999999999999999999 89999987766677788886432     2222222      24899999987


Q ss_pred             CChhhhhcccHHHHhcC----CCCcEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKM----KKGVLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~m----k~ga~ivn~sr  129 (223)
                      ....+.    ...++.+    +++..++.++-
T Consensus       292 ~~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          292 VPQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CHHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             CcHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            332221    3334444    89999988874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.44  E-value=0.00044  Score=61.96  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=71.3

Q ss_pred             cCCCCCEEEEEccc----------HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-CCeecCCHHhhcccCCEEEEcC
Q 027408           32 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        32 ~~l~g~~igIiG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-g~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      ..+.|++|+|+|+.          .-...+++.|...|.+|.+|||.-. .+....+ ++...+++++.++++|+|++++
T Consensus       318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGV-EQASKMLTDVEFVENPYAAADGADALVIVT  396 (446)
T ss_dssp             SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCH-HHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred             ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCC-HhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence            46899999999986          5678999999999999999999642 2222233 5666778999999999999998


Q ss_pred             CCChhhhhcccHH-HHhcCCCCcEEEEcCCCCccCHHHH
Q 027408          101 PLTEKTRGMFDKD-RIAKMKKGVLIVNNARGAIMDTQAV  138 (223)
Q Consensus       101 p~~~~t~~~i~~~-~~~~mk~ga~ivn~srg~~vd~~al  138 (223)
                      .-.+ .+. ++.+ ..+.|+ ..+|+|+ |+ +.|.+.+
T Consensus       397 ~~~~-f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          397 EWDA-FRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             CCTT-TTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             CCHH-hhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            7322 222 3444 445565 4577775 54 3455444

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.44  E-value=0.00016  Score=62.55  Aligned_cols=90  Identities=14%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hhCCeec---CCH---HhhcccCCEEEEcCCCChhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE---EDL---DTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~---~~l---~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++...+.+. ++|...+   .+.   .++....|+|+-++....   
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~---  256 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHH---  256 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChH---
Confidence            689999999999999999999999999999998765555555 6775421   222   223346899998887321   


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        .-...++.++++..++.++.
T Consensus       257 --~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          257 --ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             --CSHHHHTTEEEEEEEEECSC
T ss_pred             --HHHHHHHHhccCCEEEEeCC
Confidence              12567788899999988874

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.44  E-value=0.00034  Score=60.15  Aligned_cols=96  Identities=18%  Similarity=0.117  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHh--------hCCeecCCHHhhcccCCEEEEcCCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE--------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~--------~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      -.+++|+|||.|.||..+|..+...|.  ++..+|++....+ .+.+        .++....+..+.+++||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            467899999999999999999987776  8999998642111 0001        0222233445778999999998653


Q ss_pred             C--h-hhh-hcc------cH---HHHhcCCCCcEEEEcCC
Q 027408          103 T--E-KTR-GMF------DK---DRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~--~-~t~-~~i------~~---~~~~~mk~ga~ivn~sr  129 (223)
                      .  | .++ .++      -.   +.+....|++++++++.
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence            2  1 111 111      11   23344467899999974

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.43  E-value=0.00013  Score=62.48  Aligned_cols=114  Identities=15%  Similarity=0.098  Sum_probs=65.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhh--------CCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--------GAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~--------g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      +||+|||.|.+|.+++..+...+.  ++..+|......+ .+.++        .+....+..+.+++||+|+++.+....
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~   85 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK   85 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            699999999999999999976665  7999998642121 11111        111222446778999999999864221


Q ss_pred             h-----------hhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCccEE
Q 027408          106 T-----------RGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  150 (223)
Q Consensus       106 t-----------~~~i~--~~~~~~mk~ga~ivn~srg~~vd~~al~~~--L~~g~i~~a  150 (223)
                      .           ..++.  .+.+....|++.+++++-.-=+....+.+.  +...++.|.
T Consensus        86 ~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           86 PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEec
Confidence            1           01110  122233368999999854322222333333  233355555

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.42  E-value=0.00029  Score=60.00  Aligned_cols=108  Identities=16%  Similarity=0.103  Sum_probs=74.2

Q ss_pred             CCCCCEEEEE-cc-cHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhh
Q 027408           33 DLEGKTVGTV-GC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTR  107 (223)
Q Consensus        33 ~l~g~~igIi-G~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~  107 (223)
                      -+..++++|| |+ |+.|+.+++.++..|++++ .++|.....+   ..|+..+.+++|+.+  ..|++++++|  ++..
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~vD~avI~vP--~~~~   84 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT---HLGLPVFNTVKEAKEQTGATASVIYVP--PPFA   84 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCC--HHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcce---ECCeeeechHHHhhhcCCCCEEEEecC--HHHH
Confidence            4677889999 99 9999999999999999843 5666431111   357777788999998  8999999999  3332


Q ss_pred             hcccHHHHhcCCCC-cEEEEcCCCCc-cCHHHHHHHHHhC-Ccc
Q 027408          108 GMFDKDRIAKMKKG-VLIVNNARGAI-MDTQAVVDACSSG-HIA  148 (223)
Q Consensus       108 ~~i~~~~~~~mk~g-a~ivn~srg~~-vd~~al~~~L~~g-~i~  148 (223)
                      .-+-++..+   .| ..+++.+-|-. -++..+.+..++. .+.
T Consensus        85 ~~~~~e~i~---~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           85 AAAINEAID---AEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             HHHHHHHHH---TTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             HHHHHHHHH---CCCCEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            222233333   22 24567777643 2344788888877 655

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.42  E-value=0.00032  Score=60.39  Aligned_cols=111  Identities=11%  Similarity=0.151  Sum_probs=71.3

Q ss_pred             CEEEEEcccHHHHHHHHHHcc---------CCCeEE-EEcCCCCCh-----h--HHHhh-CCeecC--CHHhhcc--cCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP---------FNCNLL-YHDRVKMDP-----Q--LEKET-GAKFEE--DLDTMLP--KCD   94 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~---------~G~~V~-~~d~~~~~~-----~--~~~~~-g~~~~~--~l~e~l~--~aD   94 (223)
                      .+|||+|+|.||+.+++.+..         .+.+|. ++|++....     .  ..... .....+  ++++++.  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            379999999999999999875         466754 667654211     1  11111 122233  8999985  589


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCcc
Q 027408           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (223)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~  148 (223)
                      +|+.|+|....... .-+-....++.|..++....+.+. +-..|.+..++.+..
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999995432211 224456778899999888665553 456677777776664

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.42  E-value=0.00015  Score=63.10  Aligned_cols=90  Identities=23%  Similarity=0.275  Sum_probs=67.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhcc--------cCCEEEEcC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP--------KCDIVVVNT  100 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l~--------~aDvVv~~~  100 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+     .++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            58999999999999999999999999 89999987666667777886432     23333332        379998887


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .. +.    .-...++.++++..++.++.
T Consensus       262 G~-~~----~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GV-AE----TVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CC-HH----HHHHHHHHEEEEEEEEECSC
T ss_pred             CC-HH----HHHHHHHHhccCCEEEEEec
Confidence            62 11    22567788889888888864

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.42  E-value=0.00014  Score=58.94  Aligned_cols=97  Identities=19%  Similarity=0.103  Sum_probs=61.4

Q ss_pred             CCCCEEEEEc-ccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCC-------eecCCHHhhcccCCEEEEcCCCCh
Q 027408           34 LEGKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGA-------KFEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        34 l~g~~igIiG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~-------~~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ...|+|.|.| .|.||+.+++.|...| ++|++++|++...+.....++       ...++++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            4568899999 6999999999999999 899999987522111111111       112345677889999998776432


Q ss_pred             hhhhcccHHHHhcCCC--CcEEEEcCCCCc
Q 027408          105 KTRGMFDKDRIAKMKK--GVLIVNNARGAI  132 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~--ga~ivn~srg~~  132 (223)
                      ..  ......+..|++  ...||++|...+
T Consensus       101 ~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            21  112344444432  246888887443

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=97.39  E-value=0.0015  Score=56.12  Aligned_cols=96  Identities=17%  Similarity=0.110  Sum_probs=70.5

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCCC---hh-H---H----Hh--hC--CeecCCHHhhcccCCE
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMD---PQ-L---E----KE--TG--AKFEEDLDTMLPKCDI   95 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~~---~~-~---~----~~--~g--~~~~~~l~e~l~~aDv   95 (223)
                      .+.|.+|++||=+  ++.++++..+..+|++|.+..|....   .+ .   +    ++  .|  +....+++++++++|+
T Consensus       158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv  237 (328)
T 3grf_A          158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV  237 (328)
T ss_dssp             TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred             ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence            5899999999965  99999999999999999999986422   11 1   1    12  34  3456799999999999


Q ss_pred             EEEcC----C-CCh---h-----hhhcccHHHHhcCCCCcEEEEcC
Q 027408           96 VVVNT----P-LTE---K-----TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        96 Vv~~~----p-~~~---~-----t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      |..-+    . -.+   +     ....++.+.++.+|++++|..+.
T Consensus       238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            98631    1 001   0     12447899999999999998774

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00032  Score=60.22  Aligned_cols=91  Identities=16%  Similarity=0.106  Sum_probs=66.6

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec------CCHHhhcc-----cCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTMLP-----KCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~e~l~-----~aDvVv~~~p~  102 (223)
                      .|++|.|+|. |.||..+++.++..|++|++.++++...+.++++|....      .++.+.+.     ..|+|+.++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            5899999999 999999999999999999999987655556666665321      23444333     47999888762


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      .+     .....++.|+++..+++++..
T Consensus       249 ~~-----~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          249 EA-----AIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HH-----HHHHHTTSEEEEEEEEECCCC
T ss_pred             HH-----HHHHHHHHHhcCCEEEEEeCC
Confidence            11     225677888888888888753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.39  E-value=0.00014  Score=62.39  Aligned_cols=90  Identities=20%  Similarity=0.213  Sum_probs=66.9

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhcc----cCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP----KCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l~----~aDvVv~~~p~~~~  105 (223)
                      .|++|.|+|.|.+|...++.++..|.+|++.++++...+.++++|....     .++.+.+.    ..|+|+.++...+ 
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~-  244 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPK-  244 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH-
Confidence            6899999999999999999999999999999987766667777776421     13333222    5788888875221 


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                          .-...++.++++..++.++-
T Consensus       245 ----~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          245 ----AFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             ----HHHHHHHHEEEEEEEEECSC
T ss_pred             ----HHHHHHHHhccCCEEEEeCC
Confidence                22567788888888888764

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=97.37  E-value=0.0001  Score=66.50  Aligned_cols=115  Identities=15%  Similarity=0.088  Sum_probs=69.3

Q ss_pred             CCEEEEEcccHH-HHHHHHHHccC-----CCeEEEEcCCCCChhH----HH----hhC----CeecCCHHhhcccCCEEE
Q 027408           36 GKTVGTVGCGRI-GKLLLQRLKPF-----NCNLLYHDRVKMDPQL----EK----ETG----AKFEEDLDTMLPKCDIVV   97 (223)
Q Consensus        36 g~~igIiG~G~i-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~----~~----~~g----~~~~~~l~e~l~~aDvVv   97 (223)
                      .++|+|||.|.+ |.++|..|...     +.+|..||+.+...+.    ..    ..+    +....++++.+++||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            459999999998 66677666444     5679999997522111    11    111    233468888999999999


Q ss_pred             EcCCCChh---hh----------------------------hccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 027408           98 VNTPLTEK---TR----------------------------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (223)
Q Consensus        98 ~~~p~~~~---t~----------------------------~~i~--~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~  144 (223)
                      +++|....   ++                            .++-  .+.+....|+++++|++..--+-..++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            99985221   00                            0110  122333458999999987654444444444333


Q ss_pred             CCccEE
Q 027408          145 GHIAGY  150 (223)
Q Consensus       145 g~i~~a  150 (223)
                      .++.|.
T Consensus       188 ~rViG~  193 (472)
T 1u8x_X          188 SKILNI  193 (472)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            355554

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.37  E-value=0.00023  Score=61.64  Aligned_cols=89  Identities=15%  Similarity=0.054  Sum_probs=64.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc----c--cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----P--KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l----~--~aDvVv~~~p~~  103 (223)
                      .|++|.|+|.|.+|...++.++..|++|++.++++...+.++++|...+     .++.+.+    .  ..|+|+-++. .
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~  267 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-G  267 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-h
Confidence            6899999999999999999999999999999987655566677776422     1222222    1  5788888776 1


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +     .....++.++++..++.++.
T Consensus       268 ~-----~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          268 A-----GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             S-----CHHHHHHHEEEEEEEEEECC
T ss_pred             H-----HHHHHHHHhhcCCEEEEEec
Confidence            1     12566777888888877754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.36  E-value=0.00021  Score=62.42  Aligned_cols=67  Identities=22%  Similarity=0.356  Sum_probs=48.0

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhhCCeecCC---HHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEED---LDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~~~---l~e~l~~aDvVv~~   99 (223)
                      -+.|++|+|+|.|.+|+.+++.++.+|++|+++|+++.....  +...-...+.+   +.++++++|+|+..
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            478999999999999999999999999999999986532211  11000011222   56777889998654

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=97.35  E-value=0.00036  Score=61.96  Aligned_cols=109  Identities=13%  Similarity=0.244  Sum_probs=66.0

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCCC------------CChh----HHHhhC-------CeecCCH
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK------------MDPQ----LEKETG-------AKFEEDL   86 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~~------------~~~~----~~~~~g-------~~~~~~l   86 (223)
                      +.++.|++|.|.|+|++|+..|+.|...|.+|+ +.|.++            ...+    ..+..+       .+.+ +.
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~  285 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TD  285 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cc
Confidence            346899999999999999999999999999987 555551            1111    111112       1222 23


Q ss_pred             Hhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           87 DTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        87 ~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      ++++ .+||+++-|..     .+.++.+....+ +..+|+-.+.+++ ..++ .+.|.+..+.
T Consensus       286 ~~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~-t~ea-~~il~~~GI~  340 (421)
T 2yfq_A          286 EEFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPT-TPEG-DKVLTERGIN  340 (421)
T ss_dssp             ---------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCS-CHHH-HHHHHHHTCE
T ss_pred             cchhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCcccc-CHHH-HHHHHHCCCE
Confidence            4444 36999999886     556788888888 3567777777775 4433 3555555555

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.34  E-value=0.00014  Score=62.42  Aligned_cols=90  Identities=17%  Similarity=0.152  Sum_probs=65.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccC--CCeEEEEcCCCCChhHHHhhCCeecCCHH-------hhcc--cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKFEEDLD-------TMLP--KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~~~~l~-------e~l~--~aDvVv~~~p~~  103 (223)
                      .|.+|.|+|.|.+|...++.++.+  |++|++.++++...+.++++|...+-+..       ++-.  ..|+|+-++.. 
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~-  248 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGT-  248 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCC-
Confidence            789999999999999999999998  99999999876555667777764322221       1111  57999888862 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +.    .....++.++++..++.++.
T Consensus       249 ~~----~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          249 EE----TTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             HH----HHHHHHHHEEEEEEEEECCC
T ss_pred             hH----HHHHHHHHhhcCCEEEEeCC
Confidence            11    12566777888888887764

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.33  E-value=0.00079  Score=57.48  Aligned_cols=64  Identities=30%  Similarity=0.399  Sum_probs=47.1

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCC--CeEEEEcCCCCChhHHHhhC-------Cee---cCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETG-------AKF---EEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~e~l~~aDvVv~~~p  101 (223)
                      +||+|+|. |.+|..++..|...|  .+|..+|+.+ ....+.++.       +..   .+++++.+++||+|+++..
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag   77 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG   77 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCC
Confidence            48999998 999999999998777  5899999875 222222211       122   1367888999999999875

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.32  E-value=0.0003  Score=60.25  Aligned_cols=87  Identities=17%  Similarity=0.222  Sum_probs=60.4

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----C---CHHhh-cccCCEEEEcCCCChhhh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----E---DLDTM-LPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~---~l~e~-l~~aDvVv~~~p~~~~t~  107 (223)
                      .+++.|+|+|.+|+.+++.|...|. |.++|+++...+ ....++...    .   .++++ ++++|.|+++++..+.  
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~--  190 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE--  190 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH--
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH--
Confidence            5689999999999999999999999 999998764444 444454321    2   23344 6789999999985433  


Q ss_pred             hcccHHHHhcCCCCcEEEE
Q 027408          108 GMFDKDRIAKMKKGVLIVN  126 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn  126 (223)
                      ++.-....+.+.+...++-
T Consensus       191 n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          191 TIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             HHHHHHHHHTTCTTSEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEE
Confidence            3444566677777644443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.32  E-value=0.0005  Score=54.80  Aligned_cols=91  Identities=11%  Similarity=0.141  Sum_probs=58.9

Q ss_pred             CEEEEEc-ccHHHHHHHHHHc-cCCCeEEEEcCCCC-ChhHH--HhhCCe-------ecCCHHhhcccCCEEEEcCCCCh
Q 027408           37 KTVGTVG-CGRIGKLLLQRLK-PFNCNLLYHDRVKM-DPQLE--KETGAK-------FEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~-~~G~~V~~~d~~~~-~~~~~--~~~g~~-------~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      |+|.|.| .|.||+.+++.|. ..|++|++++|++. ..+..  ...++.       ..++++++++.+|+|+.+.....
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            5799999 5999999999999 89999999998642 11111  111221       12345667889999998887431


Q ss_pred             hhhhcccHHHHhcCCC-C-cEEEEcCCCC
Q 027408          105 KTRGMFDKDRIAKMKK-G-VLIVNNARGA  131 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~-g-a~ivn~srg~  131 (223)
                      - .   ....+..|++ + ..||++|...
T Consensus        86 ~-~---~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           86 S-D---MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             H-H---HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             h-h---HHHHHHHHHhcCCCeEEEEeece
Confidence            1 1   3445555542 2 3677776544

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.31  E-value=0.00018  Score=63.59  Aligned_cols=89  Identities=15%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC---CeEEEEcCCCCCh-hHHHhh------CCee-------cCCHHhhccc--CCEEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDP-QLEKET------GAKF-------EEDLDTMLPK--CDIVV   97 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G---~~V~~~d~~~~~~-~~~~~~------g~~~-------~~~l~e~l~~--aDvVv   97 (223)
                      ++|+|+|.|.||+.+++.|...|   .+|.+++|+.... +.+..+      .+..       .+++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999998887   3899999975322 222221      1211       2346677777  89999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus        98 ~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      .++|...  ..-+.+   ..++.|..+++++..
T Consensus        82 n~ag~~~--~~~v~~---a~l~~g~~vvD~a~~  109 (405)
T 4ina_A           82 NIALPYQ--DLTIME---ACLRTGVPYLDTANY  109 (405)
T ss_dssp             ECSCGGG--HHHHHH---HHHHHTCCEEESSCC
T ss_pred             ECCCccc--ChHHHH---HHHHhCCCEEEecCC
Confidence            9988322  111112   223456667776543

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.31  E-value=0.0003  Score=59.60  Aligned_cols=104  Identities=14%  Similarity=0.088  Sum_probs=68.4

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      .+++|+|+ |++|+.+++.+...|++ |..++|.....+   ..|+..+.+++++..  .+|++++++|  ++...-+-+
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~---i~G~~vy~sl~el~~~~~~Dv~ii~vp--~~~~~~~v~   88 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQN---VHGVPVFDTVKEAVKETDANASVIFVP--APFAKDAVF   88 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCC--HHHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCce---ECCEeeeCCHHHHhhcCCCCEEEEccC--HHHHHHHHH
Confidence            45788898 99999999999888988 335565421111   257777889999998  8999999999  333222223


Q ss_pred             HHHhcCCCCcE-EEEcCCCCc-cCHHHHHHHHHhCCcc
Q 027408          113 DRIAKMKKGVL-IVNNARGAI-MDTQAVVDACSSGHIA  148 (223)
Q Consensus       113 ~~~~~mk~ga~-ivn~srg~~-vd~~al~~~L~~g~i~  148 (223)
                      +..+   .|.. +|..+.|-. -+++.|.++.++..+.
T Consensus        89 ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           89 EAID---AGIELIVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             HHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            3333   3333 455555532 3456788888776664

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.31  E-value=0.00058  Score=50.37  Aligned_cols=99  Identities=18%  Similarity=0.225  Sum_probs=69.0

Q ss_pred             CEEEEEcc----cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ++|+|||.    ++.|..+.+.|...|++|+-++|...  +   -.|...+.++.++-. .|++++++|. +.+..++ +
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~--~---i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v-~   76 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKG--E---VLGKTIINERPVIEG-VDTVTLYINP-QNQLSEY-N   76 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCS--E---ETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGH-H
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCC--c---CCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHH-H
Confidence            67999996    67999999999999999999998642  1   246666778888877 9999999992 2233333 3


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +..+ +...+++++.  |-  .++++.+..++..++
T Consensus        77 e~~~-~g~k~v~~~~--G~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           77 YILS-LKPKRVIFNP--GT--ENEELEEILSENGIE  107 (122)
T ss_dssp             HHHH-HCCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             HHHh-cCCCEEEECC--CC--ChHHHHHHHHHcCCe
Confidence            4333 3334566543  32  356777777777676

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=97.29  E-value=0.0014  Score=58.86  Aligned_cols=110  Identities=21%  Similarity=0.269  Sum_probs=69.0

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEc-------CCCCChh-H---HH---h-------h-----CCeec
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHD-------RVKMDPQ-L---EK---E-------T-----GAKFE   83 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d-------~~~~~~~-~---~~---~-------~-----g~~~~   83 (223)
                      +.+|.|++|.|-|+|++|+..|+.|...|.+|+ +.|       +.....+ .   .+   .       +     +.+.+
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            457899999999999999999999999999977 444       3222111 1   00   0       0     22222


Q ss_pred             CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcC-CCCc-EEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGV-LIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        84 ~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~m-k~ga-~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      + .++++ .+||+.+-|..     .+.|+.+....+ ++++ +|+-.+.+. ...+| .+.|.+..|.
T Consensus       327 ~-~~~~~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p-~T~eA-~~~L~~rGIl  386 (470)
T 2bma_A          327 P-NEKPWGVPCTLAFPCAT-----QNDVDLDQAKLLQKNGCILVGEGANMP-STVDA-INLFKSNNII  386 (470)
T ss_dssp             S-SCCTTSSCCSEEEECSS-----TTCBCSHHHHHHHHTTCCEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred             c-CcCeeecCccEEEeccc-----cCcCCHHHHHHHHhcCcEEEEeCCCCC-CCHHH-HHHHHHCCcE
Confidence            1 13333 37999988875     455666655555 2334 444444454 56666 6777777766

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.29  E-value=0.0013  Score=58.94  Aligned_cols=92  Identities=18%  Similarity=0.280  Sum_probs=66.1

Q ss_pred             cCCCCCEEEEEccc----------HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           32 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        32 ~~l~g~~igIiG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      ..+.|++|+|+|+-          .-...+++.|...|.+|.+|||.-. .+....++  +...+++++.++.+|+|+++
T Consensus       314 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~  392 (450)
T 3gg2_A          314 GNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAM-KEAQKRLGDKVEYTTDMYDAVRGAEALFHV  392 (450)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCH-HHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred             ccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCc-HHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence            46899999999963          3468899999999999999999642 22223333  66678899999999999999


Q ss_pred             CCCChhhhhcccH-HHHhcCCCCcEEEEc
Q 027408          100 TPLTEKTRGMFDK-DRIAKMKKGVLIVNN  127 (223)
Q Consensus       100 ~p~~~~t~~~i~~-~~~~~mk~ga~ivn~  127 (223)
                      ++-. +.+. ++. ...+.|+ ..+|+|.
T Consensus       393 t~~~-~f~~-~~~~~~~~~~~-~~~i~D~  418 (450)
T 3gg2_A          393 TEWK-EFRM-PDWSALSQAMA-ASLVIDG  418 (450)
T ss_dssp             SCCG-GGSS-CCHHHHHHHSS-SCEEEES
T ss_pred             cCCH-HHhh-cCHHHHHHhcC-CCEEEEC
Confidence            8732 2222 343 3445565 5678885

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.29  E-value=0.00056  Score=59.34  Aligned_cols=89  Identities=22%  Similarity=0.201  Sum_probs=53.2

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCC-CeEEEEc--CCCCChhHHHhhC-------------Cee-cCCHHhhcc-cCCEEE
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHD--RVKMDPQLEKETG-------------AKF-EEDLDTMLP-KCDIVV   97 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G-~~V~~~d--~~~~~~~~~~~~g-------------~~~-~~~l~e~l~-~aDvVv   97 (223)
                      .+|+|+| .|.+|+.+++.|...+ ++|.++.  +..........++             ... ..+++++++ ++|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            5899999 8999999999997664 5776664  3221111111111             111 114556656 899999


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus        98 ~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      +|+|....     .+..-..++.|+.+|+.+.-
T Consensus        89 ~atp~~~~-----~~~a~~~~~aG~~VId~s~~  116 (354)
T 1ys4_A           89 SALPSDLA-----KKFEPEFAKEGKLIFSNASA  116 (354)
T ss_dssp             ECCCHHHH-----HHHHHHHHHTTCEEEECCST
T ss_pred             ECCCchHH-----HHHHHHHHHCCCEEEECCch
Confidence            99992211     11122223568889988753

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.29  E-value=0.00024  Score=61.41  Aligned_cols=67  Identities=22%  Similarity=0.320  Sum_probs=43.9

Q ss_pred             CEEEEEcccHHHHHHHHHHcc-CCCeEE-EEcCCCCCh-hHHHhh------------------CCeecCCHHhhcccCCE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP-QLEKET------------------GAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~-~~~~~~------------------g~~~~~~l~e~l~~aDv   95 (223)
                      .+|||+|+|.||+.+++.+.. -++++. +.++++... ..+...                  ++....+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            379999999999999999876 467765 445543211 112111                  11111256677788999


Q ss_pred             EEEcCCCC
Q 027408           96 VVVNTPLT  103 (223)
Q Consensus        96 Vv~~~p~~  103 (223)
                      |+.|+|..
T Consensus        82 V~~atp~~   89 (337)
T 1cf2_P           82 VIDCTPEG   89 (337)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCch
Confidence            99999944

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.26  E-value=0.0003  Score=60.59  Aligned_cols=90  Identities=20%  Similarity=0.163  Sum_probs=66.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhc----c--cCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----P--KCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l----~--~aDvVv~~~p~  102 (223)
                      .|.+|.|+|.|.+|...++.++..|. +|++.++++...+.++++|...+     .++.+.+    .  ..|+|+-++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~  245 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD  245 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            58899999999999999999999999 79999987655667777886432     1222222    1  47889888763


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .+     .....++.++++..++.++-
T Consensus       246 ~~-----~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          246 VH-----TFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             TT-----HHHHHHHHEEEEEEEEECCC
T ss_pred             hH-----HHHHHHHHHhcCCEEEEecc
Confidence            21     22667788888888888763

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.26  E-value=0.00029  Score=63.03  Aligned_cols=114  Identities=18%  Similarity=0.256  Sum_probs=72.4

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC--Ch--hHHHhhCCeec--CCHHhhccc-CCEEEEcC--C-C
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM--DP--QLEKETGAKFE--EDLDTMLPK-CDIVVVNT--P-L  102 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~--~~--~~~~~~g~~~~--~~l~e~l~~-aDvVv~~~--p-~  102 (223)
                      ++.|++|.|||.|..|.++|+.|+..|++|.++|....  ..  +..++.|+...  ...++++.+ +|+||++.  | .
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            57899999999999999999999999999999998542  11  23344576532  233456666 89998763  3 2


Q ss_pred             Chhhh-------hcccH-HHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCC
Q 027408          103 TEKTR-------GMFDK-DRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       103 ~~~t~-------~~i~~-~~~~~mk~ga~i-vn~srg~~vd~~al~~~L~~g~  146 (223)
                      +|...       .++.+ +.+..+.+..+| |--+.|+.-...-+...|+...
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            23211       12332 333333333444 4455677666666667777644

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.26  E-value=0.00029  Score=59.12  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=34.9

Q ss_pred             cCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ..+.|+++.|+| .|.+|+++++.|...|++|++++|+.
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            457899999999 99999999999999999999999964

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.26  E-value=0.00023  Score=61.79  Aligned_cols=90  Identities=18%  Similarity=0.128  Sum_probs=65.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhcc-----cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP-----KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l~-----~aDvVv~~~p~~  103 (223)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|...+     .++.+.+.     ..|+|+-++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            58899999999999999999999999 69999987655566777776421     12222221     479998887621


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       .    .....++.++++..++.++.
T Consensus       270 -~----~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          270 -E----ILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             -H----HHHHHHHTEEEEEEEEECCC
T ss_pred             -H----HHHHHHHHHhcCCEEEEeCC
Confidence             1    12567788888888888764

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=97.26  E-value=0.0035  Score=55.58  Aligned_cols=109  Identities=17%  Similarity=0.240  Sum_probs=73.3

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHH----HhhC-Ce--ecCCHHhhc-ccCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE----KETG-AK--FEEDLDTML-PKCD   94 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~----~~~g-~~--~~~~l~e~l-~~aD   94 (223)
                      +.+|.|++|.|.|+|++|+..|+.|...|.+|+ +.|.+       ....+..    +..+ +.  .. +.++++ -.||
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~-~~~e~~~~~~D  291 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-APEEVFGLEAE  291 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCB-CTTTGGGSSCS
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeec-cchhhhccCce
Confidence            347899999999999999999999999999987 55552       2222211    1222 11  11 223444 4799


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +++-|..     .+.++.+..+.++ =.+|+..+.+.+ ..++ .+.|.+..|.
T Consensus       292 VliP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~-t~~A-~~~L~~~Gi~  337 (419)
T 3aoe_E          292 VLVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGL-NPEA-EAYLLGKGAL  337 (419)
T ss_dssp             EEEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCB-CHHH-HHHHHHHTCE
T ss_pred             EEEeccc-----ccccccchHhhCC-ceEEEECCCCcC-CHHH-HHHHHHCCCE
Confidence            9999876     5567788888885 347788887775 4444 4566666665

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.25  E-value=0.0013  Score=52.06  Aligned_cols=93  Identities=14%  Similarity=0.091  Sum_probs=58.9

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-CCHH----hhcccCCEEEEcCCCC-----hh
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLD----TMLPKCDIVVVNTPLT-----EK  105 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l~----e~l~~aDvVv~~~p~~-----~~  105 (223)
                      |+|.|.|. |.||+.+++.|...|.+|++.+|++.........++..+ .++.    +.+..+|+|+.+....     ..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence            57999997 999999999999999999999997522221111233211 1111    6678899999887642     11


Q ss_pred             hhhcccHHHHhcCCC-CcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKK-GVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~-ga~ivn~sr  129 (223)
                      ..-......++.+++ +..+|++|.
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEec
Confidence            111123455666653 467777765

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.24  E-value=0.00086  Score=58.24  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=58.5

Q ss_pred             CCEEEEEc-ccHHHHHHHHHHccCC------CeEEEEc-CCCCChhHH---------HhhCCeecCCHHhhcccCCEEEE
Q 027408           36 GKTVGTVG-CGRIGKLLLQRLKPFN------CNLLYHD-RVKMDPQLE---------KETGAKFEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        36 g~~igIiG-~G~iG~~iA~~l~~~G------~~V~~~d-~~~~~~~~~---------~~~g~~~~~~l~e~l~~aDvVv~   98 (223)
                      .++|+|+| .|.+|+.+.+.|...+      .++..+. ++.......         ....+... +.++ +.++|+|++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~-~~~~-~~~~DvVf~   86 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPT-EAAV-LGGHDAVFL   86 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEEC-CHHH-HTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccC-CHHH-hcCCCEEEE
Confidence            36899999 8999999999998766      4666554 322111111         01111222 3333 558999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHH
Q 027408           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA  137 (223)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~a  137 (223)
                      |+|...      ..+....++.|+.+|+.|...-.+..+
T Consensus        87 alg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~  119 (352)
T 2nqt_A           87 ALPHGH------SAVLAQQLSPETLIIDCGADFRLTDAA  119 (352)
T ss_dssp             CCTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHH
T ss_pred             CCCCcc------hHHHHHHHhCCCEEEEECCCccCCcch
Confidence            999432      344444446689999998765554433

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.24  E-value=0.00046  Score=59.06  Aligned_cols=94  Identities=19%  Similarity=0.195  Sum_probs=59.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC--CChh-----HHHh-----hC--CeecCCHHhhcccCCEEEEc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK--MDPQ-----LEKE-----TG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~--~~~~-----~~~~-----~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      ..++|+|||.|.||..+|..+...|. +|..+|+++  ...+     ....     ..  +....+ .+.+++||+|+++
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIia   85 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVIT   85 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEe
Confidence            56799999999999999999988888 999999973  1111     1110     01  122233 4678899999999


Q ss_pred             CCC--Chh-hh-hcc------cHH---HHhcCCCCcEEEEcCC
Q 027408          100 TPL--TEK-TR-GMF------DKD---RIAKMKKGVLIVNNAR  129 (223)
Q Consensus       100 ~p~--~~~-t~-~~i------~~~---~~~~mk~ga~ivn~sr  129 (223)
                      ...  .|. ++ .++      -++   .+....|++++++++.
T Consensus        86 ag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           86 AGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            742  221 11 111      112   2223358899999984

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.23  E-value=0.0016  Score=58.56  Aligned_cols=97  Identities=15%  Similarity=0.088  Sum_probs=67.4

Q ss_pred             CCCCCEEEEEcccH----------HHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-------------CCeecCCHHhh
Q 027408           33 DLEGKTVGTVGCGR----------IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------------GAKFEEDLDTM   89 (223)
Q Consensus        33 ~l~g~~igIiG~G~----------iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------------g~~~~~~l~e~   89 (223)
                      .+.|++|+|+|+.-          -...+++.|...|.+|.+|||.-...+....+             ++....+..+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            48999999999753          68889999999999999999964322211111             24445678889


Q ss_pred             cccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus        90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++++|+|++++.- ++.+.+=.....+.|+...+|+|. |+-
T Consensus       406 ~~~ad~~vi~t~~-~~f~~~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          406 CDGAHAVVICTEW-DMFKELDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             HTTCSEEEECSCC-GGGGGSCHHHHHHHSCSSCEEEES-SCT
T ss_pred             HhCCcEEEEecCC-hhhhcCCHHHHHHhcCCCCEEEeC-CCc
Confidence            9999999999984 233332223444667766657776 543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.23  E-value=0.00095  Score=57.11  Aligned_cols=111  Identities=14%  Similarity=0.060  Sum_probs=71.1

Q ss_pred             CCEEEEEcccHHHHH-HHHHHccCCCeEEEEcCCCCCh--hHHHhhCCeec--CCHHhhc-ccCCEEEEcC--C-CChhh
Q 027408           36 GKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTML-PKCDIVVVNT--P-LTEKT  106 (223)
Q Consensus        36 g~~igIiG~G~iG~~-iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~e~l-~~aDvVv~~~--p-~~~~t  106 (223)
                      .++|.|||.|.+|.+ +|+.|+..|++|.++|.+....  +..++.|+...  .+.+++. .++|+||...  | .+|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            578999999999996 9999999999999999865322  23445576543  3445555 5799998853  3 33332


Q ss_pred             hh-------cccH-HHHhc--CCCCc-EEEEcCCCCccCHHHHHHHHHhCC
Q 027408          107 RG-------MFDK-DRIAK--MKKGV-LIVNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       107 ~~-------~i~~-~~~~~--mk~ga-~ivn~srg~~vd~~al~~~L~~g~  146 (223)
                      ..       ++.+ +.+..  ++... +-|--+.|+.-...-+...|+...
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            11       2332 33332  33333 345555787776666777777643

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.23  E-value=0.00048  Score=59.12  Aligned_cols=89  Identities=19%  Similarity=0.177  Sum_probs=65.1

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----CCHHhhc----c--cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML----P--KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e~l----~--~aDvVv~~~p~~  103 (223)
                      .|++|.|+|. |.||...++.++.+|++|++.+++....+.++++|...+    .++.+.+    .  ..|+|+-++...
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~  238 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP  238 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence            6899999998 999999999999999999999987766667777775422    2232222    1  478888887631


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                            .....+..++++..++.++.
T Consensus       239 ------~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          239 ------AFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             ------CHHHHHHTEEEEEEEEEC--
T ss_pred             ------HHHHHHHhhcCCCEEEEEEc
Confidence                  23667788888888888753

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=97.22  E-value=0.0022  Score=54.91  Aligned_cols=93  Identities=5%  Similarity=-0.016  Sum_probs=64.8

Q ss_pred             CCCCCEEEE-----EcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCC--h-
Q 027408           33 DLEGKTVGT-----VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT--E-  104 (223)
Q Consensus        33 ~l~g~~igI-----iG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~--~-  104 (223)
                      .+. .+|++     +|=+++.++++..+..+|++|.+..|...........++....+++++++++|+|....=..  . 
T Consensus       166 ~l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~  244 (324)
T 1js1_X          166 RPK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGD  244 (324)
T ss_dssp             SCE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTT
T ss_pred             Cee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCc
Confidence            356 89999     99999999999999999999999998653222111135666789999999999998843210  0 


Q ss_pred             --------hhhhcccHHHHhcCCCCcEEEEc
Q 027408          105 --------KTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       105 --------~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                              .....++.+.++.+| +++|..+
T Consensus       245 ~~~~~~~r~~~y~vt~e~l~~a~-~ai~MHc  274 (324)
T 1js1_X          245 NYGQILSTDRNWTVGDRQMAVTN-NAYFMHC  274 (324)
T ss_dssp             CTTCCCCCCTTSSBCHHHHTTSS-SCEEECC
T ss_pred             cccchHHHhcCcccCHHHHHhcC-CcEEECC
Confidence                    012345556666555 5555544

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=97.22  E-value=0.0022  Score=56.93  Aligned_cols=110  Identities=22%  Similarity=0.332  Sum_probs=70.3

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHHHhh----CC------------eecCCH
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKET----GA------------KFEEDL   86 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~~~~----g~------------~~~~~l   86 (223)
                      +.++.|++|.|.|+|++|+..|+.|...|.+|+ +.|.+       ....+...++    +.            ..+.+.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            347999999999999999999999999999987 44442       1112211111    11            122133


Q ss_pred             Hhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           87 DTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        87 ~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      ++++ ..||+++-|.-     .+.|+.+..+.++ =.+|+-.+.+.+ ..++ .+.|.+..+.
T Consensus       285 ~~~~~~~~Dil~P~A~-----~~~I~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVV  339 (421)
T ss_dssp             TGGGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hhhhcCCccEEEecCc-----CCccchhhHHHcC-ceEEEecCCCcC-CHHH-HHHHHHCCCE
Confidence            4555 47999998875     4456666666674 245566666654 5444 4667776666

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.22  E-value=0.0019  Score=56.11  Aligned_cols=90  Identities=14%  Similarity=0.210  Sum_probs=56.1

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCC-CeEEEEcCCC-CChhHHHhh----CC---e-ecCCHHhhcccCCEEEEcCCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVK-MDPQLEKET----GA---K-FEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G-~~V~~~d~~~-~~~~~~~~~----g~---~-~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ...+|+|+| +|.+|+.+++.|.... +++.++.... ...+....+    +.   . .+.+ ++.+.++|+|++|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 8999999999998764 4777665432 211121111    11   0 1122 45567899999999933


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ..      .+.....+.|+.+|+.+...
T Consensus        94 ~s------~~~a~~~~aG~~VId~sa~~  115 (359)
T 1xyg_A           94 TT------QEIIKELPTALKIVDLSADF  115 (359)
T ss_dssp             TH------HHHHHTSCTTCEEEECSSTT
T ss_pred             hH------HHHHHHHhCCCEEEECCccc
Confidence            22      23333337789999998644

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=97.21  E-value=0.0023  Score=54.43  Aligned_cols=93  Identities=19%  Similarity=0.273  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccC-CCeEEEEcCCC-C-ChhH---HHhhCCe--ecCCHHhhcccCCEEEEcCC
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVK-M-DPQL---EKETGAK--FEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~-G~~V~~~d~~~-~-~~~~---~~~~g~~--~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .+.|.+|++||=   |++.++++..+..+ |++|.+..|.. . +.+.   +++.|..  ...+++++++++|+|....-
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~  227 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRI  227 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCc
Confidence            589999999996   68999999999999 99999999864 2 2222   2344543  46799999999999987532


Q ss_pred             ------CChhh-----hhcccHHHHhcCCCCcEEEEc
Q 027408          102 ------LTEKT-----RGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       102 ------~~~~t-----~~~i~~~~~~~mk~ga~ivn~  127 (223)
                            ...+.     ..-++.+.++.  ++++|..+
T Consensus       228 q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~  262 (306)
T 4ekn_B          228 QKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHP  262 (306)
T ss_dssp             CGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECC
T ss_pred             ccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECC
Confidence                  11111     13356666665  66666655

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.21  E-value=0.00023  Score=55.99  Aligned_cols=89  Identities=11%  Similarity=0.158  Sum_probs=58.4

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHh-h---c--ccCCEEEEcCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT-M---L--PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e-~---l--~~aDvVv~~~p~  102 (223)
                      .|++|.|+| .|.||..+++.++..|++|++.++++...+..++.|....     .+..+ +   .  ...|+|+.+.. 
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g-  116 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  116 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-
Confidence            689999999 6999999999999999999999986533334444443211     11111 1   1  13677776654 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       ..    .....++.|+++..+|+++.
T Consensus       117 -~~----~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          117 -GE----AIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             -TH----HHHHHHHTEEEEEEEEECSC
T ss_pred             -hH----HHHHHHHHhccCCEEEEEcC
Confidence             11    12566677777777777754

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.19  E-value=0.00023  Score=59.76  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=35.8

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ..+|.|++|.|||.|.+|...++.|...|++|+++++..
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            357899999999999999999999999999999999754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.19  E-value=0.00059  Score=58.41  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=66.2

Q ss_pred             CCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p~  102 (223)
                      .|++|.|+|.| .||...++.++..|++|++.+++....+.++++|....     .++.+.+      ...|+|+.++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            58999999997 99999999999999999999998877777777776421     1222222      257999888762


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       +.    . .+.+..++++..++.++-
T Consensus       224 -~~----~-~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          224 -PD----G-NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             -HH----H-HHHHHTEEEEEEEEECCC
T ss_pred             -hh----H-HHHHHHhcCCCEEEEEee
Confidence             11    1 345578889888888864

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.19  E-value=0.00026  Score=57.21  Aligned_cols=67  Identities=21%  Similarity=0.234  Sum_probs=46.8

Q ss_pred             CCEEEEEcccHHHHHHHHHH--ccCCCeEE-EEcCCCC-ChhHHHhhCCe--ecCCHHhhccc--CCEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRL--KPFNCNLL-YHDRVKM-DPQLEKETGAK--FEEDLDTMLPK--CDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l--~~~G~~V~-~~d~~~~-~~~~~~~~g~~--~~~~l~e~l~~--aDvVv~~~p~  102 (223)
                      ..+++|+|+|++|+++++.+  ...|+++. ++|.++. ....+.-.|+.  ..+++++++++  .|.+++|+|.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs  158 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPS  158 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence            46899999999999999984  45678854 7787654 22210112443  35688888864  8999999993

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=97.18  E-value=0.00043  Score=58.99  Aligned_cols=64  Identities=20%  Similarity=0.233  Sum_probs=45.3

Q ss_pred             EEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHh-------h--C--CeecCCHHhhcccCCEEEEcCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE-------T--G--AKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~-------~--g--~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ||+|||.|.+|..+|..+...|+ +|..+|++....+. +.+       .  .  +....+. +.+++||+|+++.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~   77 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGI   77 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCC
Confidence            58999999999999998876676 69999987532221 111       1  2  2222455 678999999999663

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.18  E-value=0.0017  Score=55.31  Aligned_cols=89  Identities=20%  Similarity=0.175  Sum_probs=64.3

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p~  102 (223)
                      .|++|.|+| .|.+|...++.++..|++|++.++++...+.++++|....     .++.+.+      ...|+|+.++..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh
Confidence            689999999 8999999999999999999999987655556666665321     1222221      247888887762


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                            -.....++.++++..++.++.
T Consensus       228 ------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          228 ------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             ------GGHHHHHHHEEEEEEEEECCC
T ss_pred             ------HHHHHHHHHhccCCEEEEEcC
Confidence                  123567778888888888753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.18  E-value=0.00025  Score=58.63  Aligned_cols=107  Identities=18%  Similarity=0.216  Sum_probs=68.0

Q ss_pred             HHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h
Q 027408           14 HHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q   73 (223)
Q Consensus        14 ~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~   73 (223)
                      .++++-..|....    ...|.+++|.|+|+|.+|..+++.|...|. ++.++|+.....                   +
T Consensus        10 ~Rq~~l~~~g~~~----q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~   85 (251)
T 1zud_1           10 SRQILLDDIALDG----QQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQ   85 (251)
T ss_dssp             HHHHTSTTTHHHH----HHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHH
T ss_pred             hhhcchhhcCHHH----HHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHH
Confidence            3444444565321    236899999999999999999999999997 688887642110                   0


Q ss_pred             -HHH---hh--CC--eec------CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           74 -LEK---ET--GA--KFE------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        74 -~~~---~~--g~--~~~------~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                       .++   +.  ++  ...      ++++++++++|+|+.++. +..++..+++...+.   +..+|+.+
T Consensus        86 ~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~  150 (251)
T 1zud_1           86 VSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS  150 (251)
T ss_dssp             HHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             HHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence             011   11  11  111      135567888999998886 666777777766553   33355543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=97.18  E-value=0.00036  Score=59.08  Aligned_cols=87  Identities=15%  Similarity=0.147  Sum_probs=63.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-CCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      .|.+|.|+|.|.+|...++.++..|++|++.+ ++...+.++++|...+ .+.+++-...|+|+-++.. +.    . ..
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~-~~----~-~~  214 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNS-QN----A-AA  214 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCc-hh----H-HH
Confidence            68999999999999999999999999999999 7777788888887532 2233333457998888762 11    1 34


Q ss_pred             HHhcCCCCcEEEEcC
Q 027408          114 RIAKMKKGVLIVNNA  128 (223)
Q Consensus       114 ~~~~mk~ga~ivn~s  128 (223)
                      .++.++++..++.++
T Consensus       215 ~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          215 LVPSLKANGHIICIQ  229 (315)
T ss_dssp             TGGGEEEEEEEEEEC
T ss_pred             HHHHhcCCCEEEEEe
Confidence            567888888888774

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.17  E-value=0.00045  Score=58.70  Aligned_cols=88  Identities=22%  Similarity=0.181  Sum_probs=68.1

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CC-HHhhcccCCEEEEcCCCChhhh
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----ED-LDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~-l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .|.+|.|+| .|.+|...++.++..|++|++.++.. ..+.++++|...+     .+ +.+.+...|+|+-++..     
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~-----  225 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-NHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-----  225 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-HHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCH-----
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-hHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCc-----
Confidence            688999997 99999999999999999998887543 3566677776421     23 56666789999998871     


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ... ...++.++++..++.++.
T Consensus       226 ~~~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          226 DVG-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             HHH-HHHGGGEEEEEEEEECCS
T ss_pred             HHH-HHHHHhccCCCEEEEeCC
Confidence            122 678899999999998853

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=97.17  E-value=0.0012  Score=57.93  Aligned_cols=96  Identities=15%  Similarity=0.084  Sum_probs=66.7

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      -.++.|+|.|.+|+++++.++.+|++|+++|+.+..   +         + .+-++.+|-++...|     ...+. . +
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~---~---------~-~~~fp~a~~~~~~~p-----~~~~~-~-~  263 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF---A---------T-TARFPTADEVVVDWP-----HRYLA-A-Q  263 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT---S---------C-TTTCSSSSEEEESCH-----HHHHH-H-H
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh---c---------c-cccCCCceEEEeCCh-----HHHHH-h-h
Confidence            458999999999999999999999999999986421   1         1 122356665555554     11111 1 1


Q ss_pred             h---cCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408          116 A---KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (223)
Q Consensus       116 ~---~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~  151 (223)
                      .   .+.+++.+|-++++.-.|...|..+|+.+...+.+
T Consensus       264 ~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          264 AEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             HHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             ccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence            1   16678888888899888999998888887344343

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.17  E-value=0.00093  Score=57.83  Aligned_cols=87  Identities=17%  Similarity=0.145  Sum_probs=51.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEEEE-cCCCCChh-HHH--------------------hhCCeecCCHHhhcccC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQ-LEK--------------------ETGAKFEEDLDTMLPKC   93 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~~~-d~~~~~~~-~~~--------------------~~g~~~~~~l~e~l~~a   93 (223)
                      .+|||+|+|.||+.+++.+... +++|.++ |+++.... .++                    ..++....+.++++.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            3899999999999999998765 5786644 43221111 011                    11111112345566789


Q ss_pred             CEEEEcCCCChhhhhcccHHH-HhcCCCCcEEEEcC
Q 027408           94 DIVVVNTPLTEKTRGMFDKDR-IAKMKKGVLIVNNA  128 (223)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~-~~~mk~ga~ivn~s  128 (223)
                      |+|+.|+|.....     +.. -..++.|+.+|..+
T Consensus        83 DiV~eatg~~~s~-----~~a~~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           83 DIVVDGAPKKIGK-----QNLENIYKPHKVKAILQG  113 (343)
T ss_dssp             SEEEECCCTTHHH-----HHHHHTTTTTTCEEEECT
T ss_pred             CEEEECCCccccH-----HHHHHHHHHCCCEEEECC
Confidence            9999999833211     112 25677777666543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.17  E-value=0.00052  Score=58.54  Aligned_cols=92  Identities=15%  Similarity=0.177  Sum_probs=57.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHhh--------CCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET--------GAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~~--------g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      +||+|||.|.+|.+++..+...+  .++..+|......+ .+.++        .+....+..+.+++||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            58999999999999999997665  47999998642111 11111        111111235678999999998764321


Q ss_pred             -----------hhhcccHH---HHhcCCCCcEEEEcCC
Q 027408          106 -----------TRGMFDKD---RIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 -----------t~~~i~~~---~~~~mk~ga~ivn~sr  129 (223)
                                 +..++ .+   .+....|++.+++++.
T Consensus        81 ~g~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             TTCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcCHHHHHHhhHHHH-HHHHHHHHHHCCCcEEEEecC
Confidence                       01111 11   2222368899999854

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.16  E-value=0.00042  Score=59.05  Aligned_cols=89  Identities=20%  Similarity=0.157  Sum_probs=62.6

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec------CCHHhhcc-----cCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTMLP-----KCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~e~l~-----~aDvVv~~~p~  102 (223)
                      .|++|.|.|. |.||..+++.++..|++|++.+++....+..+++|....      .++.+.+.     ..|+|+.++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            5899999998 999999999999999999999986543444455554211      23333332     36888877761


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        .    .....++.++++..++.++.
T Consensus       225 --~----~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          225 --E----FLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             --H----HHHHHHTTEEEEEEEEECCC
T ss_pred             --H----HHHHHHHHHhcCCEEEEEec
Confidence              1    12566778888888887764

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.16  E-value=0.002  Score=55.67  Aligned_cols=89  Identities=17%  Similarity=0.083  Sum_probs=54.2

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCC-CeEEEEcCCC-CChhHHHh---h-C--CeecCCHHhhcccCCEEEEcCCCChhhh
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVK-MDPQLEKE---T-G--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G-~~V~~~d~~~-~~~~~~~~---~-g--~~~~~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .+|+|+| .|.||+.+++.|.... +++.++.... ...+....   + +  -..+.++++ +.++|+|++|+|......
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s~~   83 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVFAR   83 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHHHH
Confidence            5899999 7999999999997664 4766655432 11111110   1 1  011234444 578999999999443221


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                       .    .-..++.|+.+|+.|...
T Consensus        84 -~----a~~~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           84 -E----FDRYSALAPVLVDLSADF  102 (345)
T ss_dssp             -T----HHHHHTTCSEEEECSSTT
T ss_pred             -H----HHHHHHCCCEEEEcCccc
Confidence             1    112346788899988643

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.16  E-value=0.0018  Score=51.06  Aligned_cols=93  Identities=14%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-CCH----HhhcccCCEEEEcCCCChhhhh--
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDL----DTMLPKCDIVVVNTPLTEKTRG--  108 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l----~e~l~~aDvVv~~~p~~~~t~~--  108 (223)
                      |+|.|.| .|.||+.+++.|...|.+|++++|++...+... .++..+ .++    .+.+..+|+|+.+.........  
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   79 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKH   79 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCCccccchH
Confidence            5799999 599999999999999999999999752221111 222211 111    1677889999988865332211  


Q ss_pred             -cccHHHHhcCCC--CcEEEEcCCC
Q 027408          109 -MFDKDRIAKMKK--GVLIVNNARG  130 (223)
Q Consensus       109 -~i~~~~~~~mk~--ga~ivn~srg  130 (223)
                       ......++.+++  ...+|.+|..
T Consensus        80 ~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           80 VTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             HHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCceEEEEecc
Confidence             112445555554  3566766653

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=97.15  E-value=0.00084  Score=60.23  Aligned_cols=72  Identities=18%  Similarity=0.185  Sum_probs=50.3

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH---hhCCeec--CCHHhhcccCCEEEEcCCCChh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKFE--EDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .+++|++|.|||.|.+|..-++.|...|++|.++++... .+...   ..++...  .--++.+.++|+|+.++ ..+.
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~-~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at-~~~~   84 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI-PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT-DDDT   84 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC-HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC-SCHH
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCC-HHHHHHHhcCCEEEEECCCCccccCCccEEEEcC-CCHH
Confidence            468999999999999999999999999999999998542 33222   1233221  11134466899887654 4443

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.15  E-value=0.00077  Score=55.64  Aligned_cols=65  Identities=18%  Similarity=0.229  Sum_probs=48.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee----cCCHHhhcccCCEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~l~e~l~~aDvVv~~~p~  102 (223)
                      .++|.|.|.|.||+.+++.|...|++|++.+|+..........++..    ..+++  +.++|+|+.+...
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence            47999999999999999999999999999999764333333334432    12333  7789999888764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.14  E-value=0.0005  Score=59.34  Aligned_cols=90  Identities=12%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             CCCEEEEEcccHHHHHH-HHHH-ccCCCe-EEEEcCCCC---ChhHHHhhCCeec----CCHHh---hcccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLL-LQRL-KPFNCN-LLYHDRVKM---DPQLEKETGAKFE----EDLDT---MLPKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~i-A~~l-~~~G~~-V~~~d~~~~---~~~~~~~~g~~~~----~~l~e---~l~~aDvVv~~~p  101 (223)
                      .+.+|.|+|.|.+|... ++.+ +.+|++ |++.++++.   ..+.++++|+..+    .++.+   +-...|+|+-++.
T Consensus       172 ~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~i~~~~gg~Dvvid~~g  251 (357)
T 2b5w_A          172 DPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIYEATG  251 (357)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGGHHHHSCCEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHHHHHhCCCCCEEEECCC
Confidence            44899999999999999 9999 999998 999998776   5677777887543    12222   1014788888876


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      . +.    .....++.++++..++.++.
T Consensus       252 ~-~~----~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          252 F-PK----HAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             C-HH----HHHHHHHHEEEEEEEEECCC
T ss_pred             C-hH----HHHHHHHHHhcCCEEEEEeC
Confidence            2 11    12566777888888887764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.14  E-value=0.00043  Score=59.47  Aligned_cols=89  Identities=24%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             CCCEEEEE-cccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----CCHHhhc-----ccCCEEEEcCCCCh
Q 027408           35 EGKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLTE  104 (223)
Q Consensus        35 ~g~~igIi-G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e~l-----~~aDvVv~~~p~~~  104 (223)
                      .|++|.|+ |.|.+|...++.++..|++|++.++++...+.++++|...+    +++.+.+     ...|+|+-++..  
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~--  227 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNT--  227 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCH--
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCc--
Confidence            68999999 69999999999999999999999987655566667775422    1222222     247888877761  


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                         .......++.++++..+|.++
T Consensus       228 ---~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          228 ---DMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             ---HHHHHHHHHHEEEEEEEEESS
T ss_pred             ---hHHHHHHHHHhccCCEEEEEC
Confidence               112245667778887777664

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.13  E-value=0.00076  Score=58.78  Aligned_cols=66  Identities=23%  Similarity=0.341  Sum_probs=47.0

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhhCCeec---CCHHhhcccCCEEEE
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFE---EDLDTMLPKCDIVVV   98 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~---~~l~e~l~~aDvVv~   98 (223)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+++.....  +...-....   ..+.++++++|+|+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            468999999999999999999999999999999986533211  111000011   235566778998865

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=97.13  E-value=0.00031  Score=62.99  Aligned_cols=67  Identities=19%  Similarity=0.221  Sum_probs=46.3

Q ss_pred             CCEEEEEcccHH-HHHHHHHHcc----C-CCeEEEEcCCC--CChhH----HH----hhC----CeecCCHHhhcccCCE
Q 027408           36 GKTVGTVGCGRI-GKLLLQRLKP----F-NCNLLYHDRVK--MDPQL----EK----ETG----AKFEEDLDTMLPKCDI   95 (223)
Q Consensus        36 g~~igIiG~G~i-G~~iA~~l~~----~-G~~V~~~d~~~--~~~~~----~~----~~g----~~~~~~l~e~l~~aDv   95 (223)
                      .+||+|||.|.+ |..++..|..    + +.+|..||+.+  ...+.    ..    ..+    +....++++.+++||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            368999999999 8877666544    3 45799999965  32111    11    111    2233678889999999


Q ss_pred             EEEcCCC
Q 027408           96 VVVNTPL  102 (223)
Q Consensus        96 Vv~~~p~  102 (223)
                      |++++|.
T Consensus        87 VVitagv   93 (450)
T 1s6y_A           87 VTTQFRV   93 (450)
T ss_dssp             EEECCCT
T ss_pred             EEEcCCC
Confidence            9999984

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.13  E-value=0.00046  Score=57.88  Aligned_cols=89  Identities=20%  Similarity=0.215  Sum_probs=55.6

Q ss_pred             CEEEEEcc-cHHHHHHHHHHc-cCCCeEE-EEcCCCCC---hhHHH-----hhCCeecCCHHhhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVGC-GRIGKLLLQRLK-PFNCNLL-YHDRVKMD---PQLEK-----ETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~-~~G~~V~-~~d~~~~~---~~~~~-----~~g~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ++|+|+|+ |.||+.+++.+. .-|+++. ++|++...   .+...     ..++...+++++++.++|+|+-+++  |+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~--p~   83 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR--PE   83 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC--HH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC--hH
Confidence            58999998 999999999876 5578865 77875421   01111     1234445678888889999995554  33


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      ..   .+.....++.|.-+|-.+.|
T Consensus        84 ~~---~~~~~~a~~~G~~vVigTtG  105 (273)
T 1dih_A           84 GT---LNHLAFCRQHGKGMVIGTTG  105 (273)
T ss_dssp             HH---HHHHHHHHHTTCEEEECCCC
T ss_pred             HH---HHHHHHHHhCCCCEEEECCC
Confidence            21   12223334456556654445

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=97.13  E-value=0.0023  Score=56.77  Aligned_cols=109  Identities=15%  Similarity=0.270  Sum_probs=73.5

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHHHhh----C------CeecCCHHhhc-c
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKET----G------AKFEEDLDTML-P   91 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~~~~----g------~~~~~~l~e~l-~   91 (223)
                      +.++.|+||.|.|+|++|+..|+.|...|.+|+ +.|.+       ....+...++    +      .+.+ +.++++ .
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~  294 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEK  294 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHS
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceec
Confidence            457999999999999999999999999999975 55554       1112222211    1      2222 455655 4


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +||+++-|..     .+.|+.+....++ -.+|+-.+.+.+ ..+ ..+.|.+..|.
T Consensus       295 ~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t~e-A~~iL~~rGI~  343 (424)
T 3k92_A          295 DCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-TID-ATKILNERGVL  343 (424)
T ss_dssp             CCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHH-HHHHHHHTTCE
T ss_pred             cccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-CHH-HHHHHHHCCCE
Confidence            6999998887     4567777777773 456666666764 444 45667777665

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.13  E-value=0.00099  Score=57.37  Aligned_cols=97  Identities=13%  Similarity=0.209  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhh--C--------CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--G--------AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~--g--------~~~~~~l~e~l~~aDvVv~~   99 (223)
                      ....++|+|||.|.||..+|..+...|.  ++..+|++....+ .+.++  .        +....+.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            4578899999999999999999877776  8999998642111 11111  1        11234555 58899999998


Q ss_pred             CCCC--h-hhh-hcc--c----H---HHHhcCCCCcEEEEcCCC
Q 027408          100 TPLT--E-KTR-GMF--D----K---DRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       100 ~p~~--~-~t~-~~i--~----~---~~~~~mk~ga~ivn~srg  130 (223)
                      ....  | .++ .++  |    .   +.+....|++++++++..
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP  138 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP  138 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence            6421  1 111 111  1    1   122334789999999853

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.12  E-value=0.00054  Score=59.70  Aligned_cols=90  Identities=17%  Similarity=0.211  Sum_probs=64.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCeec-C-C---HHh-------hcc--cCCEEEEc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-E-D---LDT-------MLP--KCDIVVVN   99 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~-~-~---l~e-------~l~--~aDvVv~~   99 (223)
                      .|.+|.|+|.|.+|...++.++.+| .+|++.++++...+.++++|...+ + .   -++       +..  ..|+|+-+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~  274 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  274 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEEC
Confidence            5889999999999999999999999 599999987655566677776421 1 1   111       111  47888888


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +...+.     ....++.++++..++.++.
T Consensus       275 ~g~~~~-----~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          275 TGDSRA-----LLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             SSCTTH-----HHHHHHHEEEEEEEEECCC
T ss_pred             CCCHHH-----HHHHHHHHhcCCEEEEEec
Confidence            762221     2566777888888887764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.12  E-value=0.00043  Score=62.22  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhhCCeec----CC---HHhh-cccCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFE----ED---LDTM-LPKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~----~~---l~e~-l~~aDvVv~~~p~~  103 (223)
                      ..|+|-|+|+|.+|+.+|+.|...|++|++.|.++...+ ....+++..+    ++   |+++ +++||+++.+++..
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D   79 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD   79 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence            367899999999999999999999999999998753332 2334454321    22   3333 57899998777643

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.09  E-value=0.00079  Score=57.08  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=67.4

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeecCCHHhhcc--c-CCEEEEcCCCChhhhhcc
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLP--K-CDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~-aDvVv~~~p~~~~t~~~i  110 (223)
                      ..++.|+|. |++|+.+++.+...|++ |..++|.....+   ..|+..+.+++++..  . .|++++++|.  +...-+
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~~~DvaIi~vp~--~~~~~~   87 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSE---VHGVPVYDSVKEALAEHPEINTSIVFVPA--PFAPDA   87 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHCTTCCEEEECCCG--GGHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCce---ECCEeeeCCHHHHhhcCCCCCEEEEecCH--HHHHHH
Confidence            345777798 99999999999888998 446665431111   257777889999986  5 9999999993  222111


Q ss_pred             cHHHHhcCCCCcE-EEEcCCCCc-cCHHHHHHHHHhCCcc
Q 027408          111 DKDRIAKMKKGVL-IVNNARGAI-MDTQAVVDACSSGHIA  148 (223)
Q Consensus       111 ~~~~~~~mk~ga~-ivn~srg~~-vd~~al~~~L~~g~i~  148 (223)
                      -++..+   .|.. +|..+.|-. -+++.|.++.++..+.
T Consensus        88 v~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           88 VYEAVD---AGIRLVVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HHHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            233333   3333 455555532 2456788888776664

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.09  E-value=0.001  Score=59.03  Aligned_cols=90  Identities=16%  Similarity=0.060  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCH------------------------Hh
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL------------------------DT   88 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l------------------------~e   88 (223)
                      -.|++|.|+|. |.||...++.++..|++|++.+++....+.++++|...+-+.                        ++
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKL  298 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHH
Confidence            36899999998 999999999999999999988876655566667776422111                        11


Q ss_pred             ---hc-ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           89 ---ML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        89 ---~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                         +. ...|+|+-++..  .    .....+..++++..+++++.
T Consensus       299 v~~~~g~g~Dvvid~~G~--~----~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          299 VVEKAGREPDIVFEHTGR--V----TFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHSSCCSEEEECSCH--H----HHHHHHHHSCTTCEEEESCC
T ss_pred             HHHHhCCCceEEEECCCc--h----HHHHHHHHHhcCCEEEEEec
Confidence               11 258999988872  1    22667788999999999874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.08  E-value=0.00037  Score=59.77  Aligned_cols=89  Identities=16%  Similarity=0.126  Sum_probs=61.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCee-c----CCHHhhcc-----cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKF-E----EDLDTMLP-----KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~-~----~~l~e~l~-----~aDvVv~~~p~~  103 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++ ... +    .++.+.+.     ..|+|+.++...
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~  242 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNE  242 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCH
Confidence            78999999999999999999999999 899999865333334333 321 1    12333322     478888887621


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +.     ....++.++++..++.++.
T Consensus       243 ~~-----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          243 AA-----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHhcCCEEEEEec
Confidence            11     2566777788878887764

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=97.08  E-value=0.00059  Score=58.73  Aligned_cols=111  Identities=17%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--------CCeE-EEEcCCCCChhH-------HH---hhCCe-ecC---CHHhhc-cc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--------NCNL-LYHDRVKMDPQL-------EK---ETGAK-FEE---DLDTML-PK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--------G~~V-~~~d~~~~~~~~-------~~---~~g~~-~~~---~l~e~l-~~   92 (223)
                      .+|||||+|.||+.+++.+...        +++| .++|++......       ..   ..++. ..+   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            4799999999999999988653        3565 467776421110       11   11221 233   788887 35


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCcc
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  148 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g~i~  148 (223)
                      .|+|+.|+|.. .+....-+-..+.++.|..+|......+ .+-+.|.++.++....
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~  142 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRR  142 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCE
Confidence            89999999964 1111222344566778888887654443 2334566655555443

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.08  E-value=0.00083  Score=57.61  Aligned_cols=65  Identities=25%  Similarity=0.352  Sum_probs=46.7

Q ss_pred             CCEEEEEc-ccHHHHHHHHHHccCC--CeEEEEcCCCCChhHH---HhhC----Cee---cCCHHhhcccCCEEEEcCC
Q 027408           36 GKTVGTVG-CGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLE---KETG----AKF---EEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG-~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~---~~~g----~~~---~~~l~e~l~~aDvVv~~~p  101 (223)
                      .++|+|+| .|.+|..++..|...|  .+|..+|+.+. ....   ....    +..   .+++++.++++|+|+++.+
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            46899999 8999999999998777  68999997653 1111   1111    111   1256788999999999976

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.08  E-value=0.00055  Score=53.38  Aligned_cols=67  Identities=19%  Similarity=0.136  Sum_probs=47.8

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-------ecCCHHhhcccCCEEEEcCCC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      +++|.|.|. |.||+.+++.|...|.+|++++|++...+.....++.       ..+++.++++++|+|+.+...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence            479999997 9999999999999999999999875221111011221       112455678889999988764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.08  E-value=0.00065  Score=58.80  Aligned_cols=68  Identities=21%  Similarity=0.288  Sum_probs=49.3

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh----hCCeecCCHHhhcccCCEEEEcCC
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE----TGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~----~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      +.++||+|||. |.+|..+|..+..+|.  +|..+|......+     +...    ..+....++.+.+++||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            46789999998 9999999998887774  7999998642111     1111    123334678888999999999863

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.06  E-value=0.00048  Score=58.75  Aligned_cols=90  Identities=20%  Similarity=0.144  Sum_probs=64.8

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhhCCeec-----CCHHhhc-----ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE-----EDLDTML-----PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~-----~~l~e~l-----~~aDvVv~~~p~  102 (223)
                      .|++|.|+|. |.||..+++.++..|++|++.++++...+.+ +++|....     .++.+.+     ...|+|+.++..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  228 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence            6899999998 9999999999999999999999876444555 56665321     1222222     247888887761


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                        .    .....++.++++..++.++..
T Consensus       229 --~----~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          229 --E----ILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             --H----HHHHHHTTEEEEEEEEECCCG
T ss_pred             --c----hHHHHHHHHhhCCEEEEEeec
Confidence              1    236677888888888888643

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=97.06  E-value=0.0015  Score=56.79  Aligned_cols=88  Identities=20%  Similarity=0.275  Sum_probs=53.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEEEEcC-CCCChhHHH------hhC-------------------Ceec--CCHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR-VKMDPQLEK------ETG-------------------AKFE--EDLD   87 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~~~d~-~~~~~~~~~------~~g-------------------~~~~--~~l~   87 (223)
                      .+|||+|+|.||+.+.+.|... .++|.+.+- .......+.      .+|                   +..+  .+++
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   97 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA   97 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence            4899999999999999998765 678776653 321110001      000                   1111  1444


Q ss_pred             hhc---ccCCEEEEcCCCChhhhhcccHHHHhcCCCCc--EEEEcCC
Q 027408           88 TML---PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV--LIVNNAR  129 (223)
Q Consensus        88 e~l---~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga--~ivn~sr  129 (223)
                      ++.   .++|+|+.|+|....     -+..-..++.|+  +||+.+.
T Consensus        98 ~i~w~~~~vDvV~eatg~~~s-----~e~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           98 EIPWGASGAQIVCESTGVFTT-----EEKASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GCCHHHHTCCEEEECSSSCCS-----HHHHGGGGTTTCSEEEESSCC
T ss_pred             HCCcccCCCCEEEECCCchhh-----HHHHHHHHHcCCcEEEEeCCC
Confidence            432   479999999993221     133345567788  8888764

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=97.04  E-value=0.0015  Score=57.90  Aligned_cols=67  Identities=16%  Similarity=0.289  Sum_probs=52.7

Q ss_pred             CCCCEEEEEc-----cc---HHHHHHHHHHccCCCeEEEEcCCCC--ChhHH-------HhhCC--eecCCHHhhcccCC
Q 027408           34 LEGKTVGTVG-----CG---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQLE-------KETGA--KFEEDLDTMLPKCD   94 (223)
Q Consensus        34 l~g~~igIiG-----~G---~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~~-------~~~g~--~~~~~l~e~l~~aD   94 (223)
                      |.|++|+|||     +|   ++.++++..+..+|++|.+..|...  .++..       ++.|.  ....+++++++++|
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD  265 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD  265 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence            7899999997     34   4999999999999999999998642  33322       23453  55689999999999


Q ss_pred             EEEEcC
Q 027408           95 IVVVNT  100 (223)
Q Consensus        95 vVv~~~  100 (223)
                      +|...+
T Consensus       266 VVytd~  271 (418)
T 2yfk_A          266 VVYPKS  271 (418)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            998854

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=97.04  E-value=0.00064  Score=58.57  Aligned_cols=89  Identities=21%  Similarity=0.216  Sum_probs=65.4

Q ss_pred             CCCEEEEE-cccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc-----ccCCEEEEcCCCC
Q 027408           35 EGKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIi-G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l-----~~aDvVv~~~p~~  103 (223)
                      .|++|.|+ |.|.||..+++.++..|++|++.++++...+.++++|....     .++.+.+     ...|+|+.++.. 
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-  245 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA-  245 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG-
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH-
Confidence            68999999 68999999999999999999999987655566666665321     1233322     247888888762 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +     .....+..++++..++.++.
T Consensus       246 ~-----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          246 A-----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             G-----GHHHHHHTEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHhccCCEEEEEEe
Confidence            1     23567788888888888764

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.04  E-value=0.0025  Score=52.50  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=48.2

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcc-cCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~-~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      ++|+|+|+ |+||+.+++.+... ++++. ++|+.               +++++++. .+|+|+-+++.  +.   ..+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p--~a---~~~   60 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHP--DV---VMG   60 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSCT--TT---HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccCh--HH---HHH
Confidence            47999996 99999999998755 88866 56653               24555554 78999866652  21   112


Q ss_pred             HHHhcCCCCcEEEEcCCC
Q 027408          113 DRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg  130 (223)
                      -....++.|.-+|-.+.|
T Consensus        61 ~~~~a~~~g~~~VigTTG   78 (245)
T 1p9l_A           61 NLEFLIDNGIHAVVGTTG   78 (245)
T ss_dssp             HHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHHcCCCEEEcCCC
Confidence            222334556666666666

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=97.03  E-value=0.0041  Score=55.60  Aligned_cols=111  Identities=15%  Similarity=0.170  Sum_probs=68.9

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEE-Ec-------CCCC-Chh------------------HHHhhCCeec
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HD-------RVKM-DPQ------------------LEKETGAKFE   83 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~-~d-------~~~~-~~~------------------~~~~~g~~~~   83 (223)
                      +.++.|++|.|.|+|++|...|+.|...|.+|++ .|       +... ..+                  ...+++.+.+
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i  304 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  304 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEe
Confidence            4578999999999999999999999999999774 44       3221 111                  0001122322


Q ss_pred             CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCC-CCcEEEEcCCCCccCHHHHHHHHHhC-Ccc
Q 027408           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGVLIVNNARGAIMDTQAVVDACSSG-HIA  148 (223)
Q Consensus        84 ~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga~ivn~srg~~vd~~al~~~L~~g-~i~  148 (223)
                      + .++++ -+||+++-|..     .+.|+.+..+.++ +|+.+|--+.-.....++- +.|.+. .+.
T Consensus       305 ~-~~e~~~~~~Dil~P~A~-----~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~-~~l~~~~Gi~  365 (449)
T 1bgv_A          305 P-GEKPWGQKVDIIMPCAT-----QNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL-RFLMQQPNMV  365 (449)
T ss_dssp             E-TCCGGGSCCSEEECCSC-----TTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH-HHHHHCTTCE
T ss_pred             C-chhhhcCCcceeecccc-----ccccchhhHHHHHhcCCeEEEeCCCCcCCHHHH-HHHHHcCCEE
Confidence            1 22333 36898887764     4566677666665 3444544444444566664 666666 655

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=97.02  E-value=0.0056  Score=55.23  Aligned_cols=106  Identities=23%  Similarity=0.354  Sum_probs=70.3

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEE--------cCCCCChhHH----HhhC-------CeecCCHHhhc-cc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLE----KETG-------AKFEEDLDTML-PK   92 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~--------d~~~~~~~~~----~~~g-------~~~~~~l~e~l-~~   92 (223)
                      +|.|++|.|-|+|++|+..|+.|...|.+|+++        |+.....+..    ...+       .+.+.+  +++ .+
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~--~il~~~  318 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVD  318 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS--CGGGSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc--cccccc
Confidence            589999999999999999999999999998753        3333222221    1112       122221  333 47


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      ||+.+-|..     .+.|+.+....++ -.+|+-.+.+. .+.+| .+.|.+..|.
T Consensus       319 ~DIliPcA~-----~n~I~~~na~~l~-akiV~EgAN~p-~T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          319 CDILIPAAS-----EKQLTKSNAPRVK-AKIIAEGANGP-TTPEA-DKIFLERNIM  366 (501)
T ss_dssp             CSEEEECSS-----SCCBCTTTGGGCC-CSEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred             ceEEeeccc-----cCccCHhHHHHcC-ceEEEeCCCCc-CCHHH-HHHHHHCCCE
Confidence            999988876     5677777777775 34666666665 55554 4566666655

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.01  E-value=0.00081  Score=57.16  Aligned_cols=89  Identities=19%  Similarity=0.161  Sum_probs=65.4

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p~  102 (223)
                      .|++|.|+| .|.+|...++.++..|++|++.++++...+.++++|....     .++.+.+      ...|+|+.++..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            589999999 7999999999999999999999987655566666765321     1222222      247888888762


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                            -.....++.++++..++.++.
T Consensus       220 ------~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          220 ------DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             ------GGHHHHHTTEEEEEEEEECCC
T ss_pred             ------HHHHHHHHHhcCCCEEEEEec
Confidence                  122567788888888888864

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=97.01  E-value=0.0019  Score=55.64  Aligned_cols=89  Identities=19%  Similarity=0.170  Sum_probs=52.9

Q ss_pred             CEEEEEcccHHHHHHHHHHcc-CCCeEEEEcCCCCChhHH----H------hhC----------------Ce--ecCCHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLE----K------ETG----------------AK--FEEDLD   87 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~----~------~~g----------------~~--~~~~l~   87 (223)
                      .+|||+|+|+||+.+++.+.. -+++|.+++-.....+..    +      .+.                +.  ...+++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            489999999999999999865 467876554310112211    0      000                00  112555


Q ss_pred             hhc---ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408           88 TML---PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus        88 e~l---~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      ++-   .++|+|+.|+|....     -+..-..++.|+..|.++.+
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~-----~e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTT-----MEKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCS-----HHHHGGGGGGTCSEEEESSC
T ss_pred             HCccccCCCCEEEECCCchhh-----HHHHHHHHhCCCeEEEeccC
Confidence            652   479999999993222     23344556778666666654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.00  E-value=0.00047  Score=60.41  Aligned_cols=96  Identities=13%  Similarity=0.060  Sum_probs=67.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec----CCH-Hhhc----c--cCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL-DTML----P--KCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~~l-~e~l----~--~aDvVv~~~p~  102 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|...+    .++ .+.+    .  ..|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~  264 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            58999999999999999999999999 89999987655566777776422    121 2222    1  47999988873


Q ss_pred             Chhh---------hhcccHHHHhcCCCCcEEEEcCCC
Q 027408          103 TEKT---------RGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       103 ~~~t---------~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      ....         ....-.+.++.++++..++.++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          265 EAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             TCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred             ccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence            2100         000125677888888888877643

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.99  E-value=0.0022  Score=57.91  Aligned_cols=100  Identities=12%  Similarity=0.206  Sum_probs=69.4

Q ss_pred             ccCCCCCEEEEEccc----------HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcC
Q 027408           31 AYDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        31 ~~~l~g~~igIiG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      +..+.|++|+|+|+-          .-...+++.|...|.+|.+|||.-..   ..  .+....++++.++++|+|++++
T Consensus       348 ~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~---~~--~~~~~~~~~~~~~~ad~vvi~t  422 (478)
T 3g79_A          348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN---YP--GVEISDNLEEVVRNADAIVVLA  422 (478)
T ss_dssp             TCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC---BT--TBCEESCHHHHHTTCSEEEECS
T ss_pred             ccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc---cc--CcceecCHHHHHhcCCEEEEec
Confidence            346899999999963          23678999999999999999996531   11  2334568999999999999998


Q ss_pred             CCChhhhhcccHHHHhcCC-CCcEEEEcCCCCccCHHHH
Q 027408          101 PLTEKTRGMFDKDRIAKMK-KGVLIVNNARGAIMDTQAV  138 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk-~ga~ivn~srg~~vd~~al  138 (223)
                      +- ++.+.+=.....+.|+ +..+|+|. |+- .|.+.+
T Consensus       423 ~~-~~f~~~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          423 GH-SAYSSLKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             CC-HHHHSCCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             CC-HHHHhhhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            72 2333222234455677 37788885 543 454443

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.97  E-value=0.0019  Score=55.60  Aligned_cols=90  Identities=19%  Similarity=0.113  Sum_probs=64.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCe---e-c-----CCHHhhc------ccCCEEEE
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAK---F-E-----EDLDTML------PKCDIVVV   98 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~---~-~-----~~l~e~l------~~aDvVv~   98 (223)
                      .|.+|.|+|.|.+|...++.++.+|.+ |++.++++...+.++++.-.   + .     .++.+.+      ...|+|+-
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            588999999999999999999999997 99999876555666655211   1 0     1111211      25899999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ++.. +.    .-...++.++++..++.++.
T Consensus       259 ~~g~-~~----~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          259 CTGV-ES----SIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CSCC-HH----HHHHHHHHSCTTCEEEECCC
T ss_pred             CCCC-hH----HHHHHHHHhcCCCEEEEEcc
Confidence            8872 11    12567788999999998864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.97  E-value=0.00053  Score=59.36  Aligned_cols=89  Identities=18%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc-----ccCCEEEEcCCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l-----~~aDvVv~~~p~~  103 (223)
                      .|++|.|+| .|.+|..+++.++..|++|++.++++...+.++++|....     .++.+.+     ...|+|+.++.. 
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-  241 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG-  241 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence            589999999 7999999999999999999999987544455666665321     2333333     247888888762 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +     .....++.++++..++.++.
T Consensus       242 ~-----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          242 A-----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             H-----HHHHHHHHEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHHhcCCEEEEEeC
Confidence            1     22567788888888888764

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.96  E-value=0.0014  Score=59.01  Aligned_cols=37  Identities=14%  Similarity=0.208  Sum_probs=28.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHcc-CCC---eEEEEcCCCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKP-FNC---NLLYHDRVKM   70 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~-~G~---~V~~~d~~~~   70 (223)
                      .+.+ +|.|||+|.||+.+|..+.. .++   +|++.|+...
T Consensus        11 ~~~~-rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~   51 (480)
T 2ph5_A           11 LFKN-RFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT   51 (480)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC
T ss_pred             cCCC-CEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh
Confidence            3454 58999999999999999864 455   6888887653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.96  E-value=0.0016  Score=54.69  Aligned_cols=39  Identities=10%  Similarity=0.065  Sum_probs=35.2

Q ss_pred             ccCCCCCEEEEEccc---HHHHHHHHHHccCCCeEEEEcCCC
Q 027408           31 AYDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        31 ~~~l~g~~igIiG~G---~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ...+.||++.|.|.+   .||+++|+.|...|++|++.+++.
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            346899999999985   899999999999999999999875

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.96  E-value=0.00046  Score=59.49  Aligned_cols=101  Identities=12%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccC---------CCeE-EEEcCCCCChhHHHhhCC-eecCCHHhhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF---------NCNL-LYHDRVKMDPQLEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~---------G~~V-~~~d~~~~~~~~~~~~g~-~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .+|||||+|.||+.+++.+...         +++| .++|++.....   ..+. ...+++++++ +.|+|+.|+|....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~---~~~~~~~~~d~~~ll-~iDvVve~t~~~~~   79 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR---AIPQELLRAEPFDLL-EADLVVEAMGGVEA   79 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC---SSCGGGEESSCCCCT-TCSEEEECCCCSHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh---ccCcccccCCHHHHh-CCCEEEECCCCcHH
Confidence            3799999999999999988654         4564 46777642211   1111 2356888888 99999999984421


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSG  145 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g  145 (223)
                      ..    +-..+.++.|..+|...-..+ ..-+.|.++-++.
T Consensus        80 a~----~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           80 PL----RLVLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             HH----HHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             HH----HHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            11    222345667777776433222 2445566665555

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.95  E-value=0.00064  Score=58.12  Aligned_cols=89  Identities=25%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hhCCeec------CCHHhhcc-----cCCEEEEcCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTMLP-----KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~------~~l~e~l~-----~aDvVv~~~p  101 (223)
                      .|++|.|+|. |.+|..+++.++..|++|++.+++....+.++ ++|....      .++.+.+.     ..|+|+.++.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  234 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG  234 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence            5899999997 99999999999999999999998754444444 4564311      12333332     4788887775


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      . +     .....++.++++..++.++.
T Consensus       235 ~-~-----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          235 G-K-----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             H-H-----HHHHHHTTEEEEEEEEECCC
T ss_pred             H-H-----HHHHHHHHHhcCCEEEEEcc
Confidence            2 1     22566777888888877753

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.95  E-value=0.0027  Score=54.47  Aligned_cols=88  Identities=18%  Similarity=0.144  Sum_probs=65.4

Q ss_pred             CCEEEEE-cccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCCCC
Q 027408           36 GKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPLT  103 (223)
Q Consensus        36 g~~igIi-G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p~~  103 (223)
                      +++|.|. |.|.+|...++.++..|++|++.+++....+.++++|...+     .++.+.+      ...|+|+-++.. 
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~-  243 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG-  243 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-
Confidence            3677665 89999999999999999999999987766677777776421     2233322      258999988861 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +    .+ ...++.++++..++.++.
T Consensus       244 ~----~~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          244 P----LA-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             H----HH-HHHHHHSCTTCEEEECCC
T ss_pred             h----hH-HHHHhhhcCCCEEEEEec
Confidence            1    12 667889999999999873

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=96.94  E-value=0.00065  Score=59.14  Aligned_cols=90  Identities=20%  Similarity=0.258  Sum_probs=52.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--C--CeEE-EEcCCCCChhHHHhh-CCeecCCHHhhccc------------------
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--N--CNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLPK------------------   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--G--~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~e~l~~------------------   92 (223)
                      .+|||||+|.||+.+++.+...  |  ++|. ++|++.  ......+ |+..+++.++++.+                  
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~   82 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTS   82 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTC
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhc
Confidence            4799999999999999999764  3  4554 556432  1111222 33333445555432                  


Q ss_pred             --CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc
Q 027408           93 --CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (223)
Q Consensus        93 --aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v  133 (223)
                        .|+|+.|+|.....     ......++.|..+|...-..+-
T Consensus        83 ~~~DvVV~~t~~~~~a-----~~~~~AL~aGkhVVtaNkkpla  120 (358)
T 1ebf_A           83 PKPVILVDNTSSAYIA-----GFYTKFVENGISIATPNKKAFS  120 (358)
T ss_dssp             SSCEEEEECSCCHHHH-----TTHHHHHHTTCEEECCCCGGGS
T ss_pred             cCCcEEEEcCCChHHH-----HHHHHHHHCCCeEEecCccccc
Confidence              27999999843221     1223456667777765444443

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.94  E-value=0.0019  Score=55.92  Aligned_cols=89  Identities=12%  Similarity=0.086  Sum_probs=64.4

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhhCCeec----CCHHhhc-----ccCCEEEEcCCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e~l-----~~aDvVv~~~p~~  103 (223)
                      .|.+|.|+| .|.+|...++.++. .|.+|++.++++...+.++++|...+    +++.+.+     ...|+|+-++.. 
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~-  249 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHT-  249 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCc-
Confidence            688999999 99999999999997 59999999987655666777776422    2233322     247888887761 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                          .......++.++++..++.++
T Consensus       250 ----~~~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          250 ----DKHAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             ----HHHHHHHHHHSCTTCEEEECS
T ss_pred             ----hhhHHHHHHHhcCCCEEEEEC
Confidence                112256778888888888773

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.94  E-value=0.0016  Score=51.86  Aligned_cols=66  Identities=15%  Similarity=0.146  Sum_probs=47.3

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-Hh-----hCCeecCCHHhhcccCCEEEEcCCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KE-----TGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~-----~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ++|.|.| .|.||+.+++.|...|.+|++.+|++...+.. ..     .++...++++++++++|+|+.+...
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence            7899999 59999999999999999999999975221110 00     1111123456778899999988754

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=96.92  E-value=0.005  Score=54.23  Aligned_cols=68  Identities=16%  Similarity=0.318  Sum_probs=52.7

Q ss_pred             CCCCCEEEEEcc-----c---HHHHHHHHHHccCCCeEEEEcCCCC--ChhHH-------HhhCC--eecCCHHhhcccC
Q 027408           33 DLEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQLE-------KETGA--KFEEDLDTMLPKC   93 (223)
Q Consensus        33 ~l~g~~igIiG~-----G---~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~~-------~~~g~--~~~~~l~e~l~~a   93 (223)
                      .|.|++|+|+|.     |   ++.++++..+..+|++|.+..|..-  .++..       +..|.  ....+++++++++
T Consensus       188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~a  267 (399)
T 3q98_A          188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDA  267 (399)
T ss_dssp             GGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTC
T ss_pred             ccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCC
Confidence            378999999984     4   7999999999999999999998632  23322       23453  4567999999999


Q ss_pred             CEEEEcC
Q 027408           94 DIVVVNT  100 (223)
Q Consensus        94 DvVv~~~  100 (223)
                      |+|+.-+
T Consensus       268 DvVytd~  274 (399)
T 3q98_A          268 DIVYPKS  274 (399)
T ss_dssp             SEEEECC
T ss_pred             CEEEecC
Confidence            9998764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.91  E-value=0.0052  Score=55.39  Aligned_cols=99  Identities=18%  Similarity=0.176  Sum_probs=68.3

Q ss_pred             cCCCCCEEEEEccc----------HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh------------CCeecCCHHhh
Q 027408           32 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET------------GAKFEEDLDTM   89 (223)
Q Consensus        32 ~~l~g~~igIiG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~------------g~~~~~~l~e~   89 (223)
                      ..+.|++|+|+|+-          .-...+++.|...|.+|.+|||.. ..+....+            .+....++++.
T Consensus       324 ~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (478)
T 2y0c_A          324 EDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVA-QEEARRVIALDLADHPSWLERLSFVDDEAQA  402 (478)
T ss_dssp             SCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTT-HHHHHHHHHHHTTTCHHHHTTEEECSSHHHH
T ss_pred             ccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCc-cHHHHHhhccccccccccccceeecCCHHHH
Confidence            36899999999952          357788999999999999999964 22211222            25566788999


Q ss_pred             cccCCEEEEcCCCChhhhhcccHH-HHhcCCCCcEEEEcCCCCccCHH
Q 027408           90 LPKCDIVVVNTPLTEKTRGMFDKD-RIAKMKKGVLIVNNARGAIMDTQ  136 (223)
Q Consensus        90 l~~aDvVv~~~p~~~~t~~~i~~~-~~~~mk~ga~ivn~srg~~vd~~  136 (223)
                      ++++|+|++++.-. +.+. ++.+ ..+.|+ ..+|+|+ |+ +.|.+
T Consensus       403 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          403 ARDADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             TTTCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             HhCCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            99999999999843 3332 3444 445555 4788887 44 34544

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=96.90  E-value=0.0039  Score=55.66  Aligned_cols=110  Identities=18%  Similarity=0.232  Sum_probs=68.5

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHHH------h-------------hCCeec
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEK------E-------------TGAKFE   83 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~~------~-------------~g~~~~   83 (223)
                      +.+|.|+||.|-|+|++|...|+.|...|.+|+ +.|.+       ....+...      .             .+.+.+
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v  313 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF  313 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe
Confidence            457999999999999999999999999999875 55532       22111110      0             122223


Q ss_pred             CCHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK--KGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        84 ~~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk--~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                       +.++++ -+||+.+-|.-     .+.|+.+....+.  +=.+|+-.+.+.+ ..+| .+.|.+..|.
T Consensus       314 -~~~~i~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~iL~~rGI~  373 (456)
T 3r3j_A          314 -ENQKPWNIPCDIAFPCAT-----QNEINENDADLFIQNKCKMIVEGANMPT-HIKA-LHKLKQNNII  373 (456)
T ss_dssp             -CSCCGGGSCCSEEEECSC-----TTCBCHHHHHHHHHHTCCEEECCSSSCB-CTTH-HHHHHTTTCE
T ss_pred             -CCccccccCccEEEeCCC-----ccchhhHHHHHHHhcCCeEEEecCCCCC-CHHH-HHHHHHCCCE
Confidence             234444 46999888875     5567777776662  2245566666664 3333 3566665555

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.89  E-value=0.0015  Score=52.41  Aligned_cols=70  Identities=19%  Similarity=0.223  Sum_probs=50.8

Q ss_pred             CCCCEEEEEc-ccHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCC-------eecCCHHhhcccCCEEEEcCCCC
Q 027408           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA-------KFEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        34 l~g~~igIiG-~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~-------~~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      +.+++|.|.| .|.||+.+++.|...|.  +|++++|++...+.....++       ...++++++++.+|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5789999999 59999999999999999  99999987632221111111       12245667788899999887644

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.88  E-value=0.0016  Score=56.39  Aligned_cols=88  Identities=17%  Similarity=0.267  Sum_probs=51.5

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccC-CCeEEEEc--CCCCChhHHHhh-------------CCeec-CCHHhhcccCCEEEE
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHD--RVKMDPQLEKET-------------GAKFE-EDLDTMLPKCDIVVV   98 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~-G~~V~~~d--~~~~~~~~~~~~-------------g~~~~-~~l~e~l~~aDvVv~   98 (223)
                      .+|||+| +|.||+.+.+.|... .+++.++.  ++.........+             ..... .+.++ +.++|+|++
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~   83 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS   83 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence            5899999 899999999999765 45776553  221111121111             11111 13344 478999999


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      |+|....  .   +..-..++.|+.+|+.+..
T Consensus        84 atp~~~s--~---~~a~~~~~aG~~VId~s~~  110 (350)
T 2ep5_A           84 ALPNELA--E---SIELELVKNGKIVVSNASP  110 (350)
T ss_dssp             CCCHHHH--H---HHHHHHHHTTCEEEECSST
T ss_pred             CCChHHH--H---HHHHHHHHCCCEEEECCcc
Confidence            9992211  1   1122234567888888743

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.87  E-value=0.0023  Score=54.58  Aligned_cols=91  Identities=18%  Similarity=0.122  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p  101 (223)
                      ..|.+|.|+|.|.+|...++.++..|.+ +++.++++...+.++++|...+     .+..+..      ...|+|+-++.
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G  238 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAG  238 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSC
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccccccccc
Confidence            4689999999999999999999999986 5688887666677788886422     2333322      24688887775


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      . +.+    -+..++.++++..++.++.
T Consensus       239 ~-~~~----~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          239 V-PQT----VELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             S-HHH----HHHHHHHCCTTCEEEECCC
T ss_pred             c-cch----hhhhhheecCCeEEEEEec
Confidence            2 221    2567788999998887764

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.87  E-value=0.0031  Score=54.65  Aligned_cols=91  Identities=20%  Similarity=0.229  Sum_probs=65.6

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc---ccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML---PKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l---~~aDvVv~~~p~~~~  105 (223)
                      .|++|.|+| .|.+|...++.++..|++|++.++ ....+.++++|...+     .++.+.+   ...|+|+-++.....
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~  261 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTE  261 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhh
Confidence            689999999 799999999999999999988874 444566677776421     1233222   358999998873311


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      +    ....+..++++..++.++..
T Consensus       262 ~----~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          262 T----WAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             H----HGGGGBCSSSCCEEEESCCS
T ss_pred             h----hHHHHHhhcCCcEEEEeCCC
Confidence            1    13456778999999998754

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.86  E-value=0.0014  Score=56.49  Aligned_cols=30  Identities=27%  Similarity=0.445  Sum_probs=24.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEEEEc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHD   66 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~~~d   66 (223)
                      .+|||+|+|+||+.+++.+... +++|.+++
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            3899999999999999998765 67766554

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.85  E-value=0.0012  Score=57.80  Aligned_cols=95  Identities=15%  Similarity=0.139  Sum_probs=66.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecC-----CHHhhc------ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-----DLDTML------PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-----~l~e~l------~~aDvVv~~~p~  102 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+.     ++.+.+      ...|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~  264 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            68999999999999999999999999 699999876556677777764321     122222      247999888873


Q ss_pred             Chhh----------hhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKT----------RGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t----------~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ....          ....-.+.++.++++..++.++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          265 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             cccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            2100          00012567788888888887763

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.84  E-value=0.00096  Score=57.15  Aligned_cols=90  Identities=16%  Similarity=0.079  Sum_probs=66.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhhCCeec----CCHHhh----cc--cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LP--KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e~----l~--~aDvVv~~~p~~  103 (223)
                      .|.+|.|+|.|.+|...++.++.. |.+|++.++++...+.++++|...+    .++.+.    ..  ..|+|+-++...
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~  250 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQ  250 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCH
Confidence            589999999999999999999987 7899999987766677778876422    122222    11  579998888721


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +     .-...++.++++..++.++-
T Consensus       251 ~-----~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          251 S-----TIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             H-----HHHHHHHHEEEEEEEEECSC
T ss_pred             H-----HHHHHHHHHhcCCEEEEECC
Confidence            1     22567788888888888763

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.84  E-value=0.0011  Score=56.04  Aligned_cols=73  Identities=16%  Similarity=0.120  Sum_probs=50.7

Q ss_pred             cccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHh-hCCe-------ecCCHHhhcc--cCCEEE
Q 027408           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKE-TGAK-------FEEDLDTMLP--KCDIVV   97 (223)
Q Consensus        30 ~~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~-~g~~-------~~~~l~e~l~--~aDvVv   97 (223)
                      ....+.+++|.|.|. |.||+.+++.|...|++|++++|+..... .... .++.       ...+++++++  .+|+|+
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vi   93 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVV   93 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEE
Confidence            345789999999997 99999999999999999999998642211 1111 1111       1123456676  789988


Q ss_pred             EcCCC
Q 027408           98 VNTPL  102 (223)
Q Consensus        98 ~~~p~  102 (223)
                      .+...
T Consensus        94 h~A~~   98 (330)
T 2pzm_A           94 HSAAA   98 (330)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            77653

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.84  E-value=0.00093  Score=57.32  Aligned_cols=90  Identities=19%  Similarity=0.167  Sum_probs=61.9

Q ss_pred             CCCEEEEEccc-HHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhhCCeec-----CC----HHhhc--ccCCEEEEcCC
Q 027408           35 EGKTVGTVGCG-RIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE-----ED----LDTML--PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G-~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~-----~~----l~e~l--~~aDvVv~~~p  101 (223)
                      .|++|.|+|.| .||..+++.++.. |++|++.++++...+.++++|....     .+    +.++.  ...|+|+.++.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  249 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  249 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCC
Confidence            58899999998 9999999999998 9999999987644455556664321     11    22333  25788887776


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ..+.     ....++.++++..++.++.
T Consensus       250 ~~~~-----~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          250 SEKT-----LSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             CHHH-----HTTGGGGEEEEEEEEECCS
T ss_pred             CHHH-----HHHHHHHHhcCCEEEEECC
Confidence            2111     1345567788878877764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.83  E-value=0.0041  Score=50.94  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcc-cH--HHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~--iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ++.||++.|.|. |.  ||+++|+.|...|++|++.+++.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            588999999997 55  99999999999999999998875

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.83  E-value=0.0014  Score=55.57  Aligned_cols=87  Identities=15%  Similarity=0.093  Sum_probs=64.4

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHh------hc-ccCCEEEEcCCCChhhh
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT------ML-PKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e------~l-~~aDvVv~~~p~~~~t~  107 (223)
                      |+ |.|+|. |.+|...++.++..|++|++.++++...+.++++|...+-+..+      +. ...|+|+-++..    .
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~----~  222 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGD----K  222 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCH----H
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCc----H
Confidence            45 999998 99999999999999999999998876777777888643212221      11 246888877751    1


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        .....++.++++..++.++.
T Consensus       223 --~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          223 --VLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             --HHHHHHHTEEEEEEEEECCC
T ss_pred             --HHHHHHHHHhcCCEEEEEec
Confidence              23677888888888888864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.82  E-value=0.0053  Score=55.36  Aligned_cols=104  Identities=17%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             CCCCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCCChhH---HHh-h-------CCeecCCHHhhcc
Q 027408           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKE-T-------GAKFEEDLDTMLP   91 (223)
Q Consensus        33 ~l~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---~~~-~-------g~~~~~~l~e~l~   91 (223)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+|||.-...+.   ... +       .+...+++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            489999999995          446788999999999999999996432211   111 1       1344567888999


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHH
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  139 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~  139 (223)
                      ++|+|++++.-. +.+.+=.....+.|+...+|+|. |+ ++|.+.+.
T Consensus       412 ~ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~  456 (481)
T 2o3j_A          412 GAHAIVVLTEWD-EFVELNYSQIHNDMQHPAAIFDG-RL-ILDQKALR  456 (481)
T ss_dssp             TCSEEEECSCCG-GGTTSCHHHHHHHSCSSCEEEES-SS-CSCHHHHH
T ss_pred             CCCEEEEcCCcH-HhhccCHHHHHHhcCCCCEEEEC-CC-CCCHHHHH
Confidence            999999999732 33332223445567776678876 44 45655443

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=96.82  E-value=0.0039  Score=53.62  Aligned_cols=89  Identities=17%  Similarity=0.066  Sum_probs=62.6

Q ss_pred             CC-CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCC----hhHHHhhCCeecCCH--------Hhhc--------cc
Q 027408           35 EG-KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD----PQLEKETGAKFEEDL--------DTML--------PK   92 (223)
Q Consensus        35 ~g-~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~----~~~~~~~g~~~~~~l--------~e~l--------~~   92 (223)
                      .| .+|.|+|. |.+|...++.++.+|++|++..++...    .+..+++|...+-+.        .+.+        ..
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g  245 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  245 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCC
Confidence            57 89999998 999999999999999998888765433    344567776432111        1111        24


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +|+|+-++.. +   ..  ...++.++++..++.++.
T Consensus       246 ~Dvvid~~G~-~---~~--~~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          246 AKLALNCVGG-K---SS--TGIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             EEEEEESSCH-H---HH--HHHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCCc-h---hH--HHHHHHhccCCEEEEecC
Confidence            7999988861 1   11  256788999988888864

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.81  E-value=0.0047  Score=53.47  Aligned_cols=89  Identities=13%  Similarity=0.004  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc-----ccCCEEEEcCCC
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPL  102 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l-----~~aDvVv~~~p~  102 (223)
                      -.|.+|.|+|. |.+|...++.++..|++|++.. ++...+.++++|...+     .++.+.+     ...|+|+-++..
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~  241 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN  241 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCc
Confidence            47899999999 8999999999999999988775 4555667778886421     2222222     237999888872


Q ss_pred             ChhhhhcccHHHHhcC-CCCcEEEEcC
Q 027408          103 TEKTRGMFDKDRIAKM-KKGVLIVNNA  128 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~m-k~ga~ivn~s  128 (223)
                      . .    .....++.+ +++..++.++
T Consensus       242 ~-~----~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          242 V-E----STTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             H-H----HHHHHHHHSCTTCEEEEESS
T ss_pred             h-H----HHHHHHHHhhcCCCEEEEEe
Confidence            1 1    124566777 5788888876

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.81  E-value=0.0039  Score=52.53  Aligned_cols=108  Identities=10%  Similarity=0.147  Sum_probs=75.8

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCCh---------
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE---------  104 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~---------  104 (223)
                      +.|++|.++|........++.|...|++|.+......  + ....|.....++.+.++++|+|+...|...         
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~--~-~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~   81 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQL--D-HGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF   81 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTS--S-CCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEecccc--c-cccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence            6789999999999999999999999999987753211  1 112244444567788889999987444221         


Q ss_pred             -hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccE
Q 027408          105 -KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (223)
Q Consensus       105 -~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~  149 (223)
                       .+...++++.++.++++.+|+ +   + +|..++.+++.+..+.-
T Consensus        82 a~~~~~~~~~~l~~~~~l~~i~-~---g-~~~~d~~~~~~~~gi~v  122 (300)
T 2rir_A           82 SNEEVVLKQDHLDRTPAHCVIF-S---G-ISNAYLENIAAQAKRKL  122 (300)
T ss_dssp             CSSCEECCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHTTCCE
T ss_pred             ccCCccchHHHHhhcCCCCEEE-E---e-cCCHHHHHHHHHCCCEE
Confidence             122236788999999988877 2   2 37778677777777663

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.81  E-value=0.001  Score=52.87  Aligned_cols=67  Identities=19%  Similarity=0.243  Sum_probs=47.6

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----hCCee-cCCHHhhcccCCEEEEcCCCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKF-EEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~-~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ++|.|.| .|.||+.+++.|...|++|++.+|+....+....     .++.. .+++.++++++|+|+.+....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            4799999 7999999999999999999999997522111010     11111 224566788999999887644

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.81  E-value=0.0018  Score=55.82  Aligned_cols=91  Identities=15%  Similarity=0.213  Sum_probs=55.1

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccC-CCeEEEE-cCC---CCChhHH------Hhh-CCeecC--CHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRV---KMDPQLE------KET-GAKFEE--DLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~-G~~V~~~-d~~---~~~~~~~------~~~-g~~~~~--~l~e~l~~aDvVv~~~p  101 (223)
                      .+|+|+| .|.+|+.+.+.|... .+++..+ .++   ..-....      ... .....+  +.+++++++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            5899999 599999999999874 5676654 333   1111111      110 121111  45566589999999999


Q ss_pred             CChhhhhcccHHHH-hcCCCCcEEEEcCCCCcc
Q 027408          102 LTEKTRGMFDKDRI-AKMKKGVLIVNNARGAIM  133 (223)
Q Consensus       102 ~~~~t~~~i~~~~~-~~mk~ga~ivn~srg~~v  133 (223)
                      .     +. ..+.. ..++.|+.+|+.|..--.
T Consensus        85 ~-----~~-s~~~~~~~~~~g~~vIDlSa~fR~  111 (337)
T 3dr3_A           85 H-----EV-SHDLAPQFLEAGCVVFDLSGAFRV  111 (337)
T ss_dssp             H-----HH-HHHHHHHHHHTTCEEEECSSTTSS
T ss_pred             h-----HH-HHHHHHHHHHCCCEEEEcCCcccc
Confidence            2     11 12222 234678999999865433

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.80  E-value=0.0089  Score=51.95  Aligned_cols=97  Identities=12%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             cCCCCCEEEEEcc--cHHHHHHHHHHccCCCeEEEEcCCC-C-Chh-------HHHhhCC--eecCCHHhhcccCCEEEE
Q 027408           32 YDLEGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVK-M-DPQ-------LEKETGA--KFEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        32 ~~l~g~~igIiG~--G~iG~~iA~~l~~~G~~V~~~d~~~-~-~~~-------~~~~~g~--~~~~~l~e~l~~aDvVv~   98 (223)
                      ..+.|.+|++||=  +++.++++..+..+|++|.++.|.. . ..+       .+.+.|.  ....+++|.++++|+|..
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt  256 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYT  256 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEE
Confidence            4689999999995  5899999999999999999999854 2 221       1223343  456799999999999985


Q ss_pred             cCCC----Chh---------hhhcccHHHHhcC-CCCcEEEEcC
Q 027408           99 NTPL----TEK---------TRGMFDKDRIAKM-KKGVLIVNNA  128 (223)
Q Consensus        99 ~~p~----~~~---------t~~~i~~~~~~~m-k~ga~ivn~s  128 (223)
                      -.-.    .++         ...-++.+.++.+ |++++|..+.
T Consensus       257 ~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          257 DVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             CCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            3321    111         1134677888764 7788888774

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.80  E-value=0.0011  Score=54.78  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=46.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-HH--hhCCeecCCHHhhccc-CCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EK--ETGAKFEEDLDTMLPK-CDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~--~~g~~~~~~l~e~l~~-aDvVv~~~p  101 (223)
                      .+++|.|.|.|.||+.+++.|...|++|++++|+...... ..  ..++....+++++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            4678999999999999999999999999999987532110 00  0111112344556666 999987653

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=96.79  E-value=0.0099  Score=53.11  Aligned_cols=99  Identities=11%  Similarity=0.121  Sum_probs=74.5

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC---eEEEEcCCC----CChhH------------HHhhCCeecCCHHhhcc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK----MDPQL------------EKETGAKFEEDLDTMLP   91 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~---~V~~~d~~~----~~~~~------------~~~~g~~~~~~l~e~l~   91 (223)
                      ++.|...+|.|.|.|..|..+|+.+...|.   +|+.+|+..    .....            ++..+-....+|.|+++
T Consensus       214 gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~  293 (487)
T 3nv9_A          214 KKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACV  293 (487)
T ss_dssp             TCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHT
T ss_pred             CCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHh
Confidence            567899999999999999999999999998   699999862    11111            11111113458999999


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      .+|+++=+.- .  ..+++.++.++.|.+..+|.-.|....
T Consensus       294 ~adVlIG~S~-~--~pg~ft~e~V~~Ma~~PIIFaLSNPtp  331 (487)
T 3nv9_A          294 GADVLISLST-P--GPGVVKAEWIKSMGEKPIVFCCANPVP  331 (487)
T ss_dssp             TCSEEEECCC-S--SCCCCCHHHHHTSCSSCEEEECCSSSC
T ss_pred             cCCEEEEecc-c--CCCCCCHHHHHhhcCCCEEEECCCCCc
Confidence            9997765441 0  136899999999999999998887654

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.78  E-value=0.0024  Score=52.74  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=47.4

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhhCCee-------cCCHHhhcccCCEEEEcCCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ++|.|.| .|.||+.+++.|... |.+|.+.+|++.........++..       .++++++++.+|+|+.+...
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4799999 599999999999887 999999998753222112223321       23466788999999888764

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.77  E-value=0.0025  Score=56.94  Aligned_cols=106  Identities=15%  Similarity=0.137  Sum_probs=66.4

Q ss_pred             CEEEEEcccHHHHHHHHHHcc----------CCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCC-
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP----------FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPL-  102 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~----------~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~-  102 (223)
                      .+|||+|+|.||+.+++.+..          .+.+|. ++|++....... ..+...++++++++.  +.|+|+.++|. 
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            589999999999999887652          355654 667654211111 123455678999986  58999999994 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCcc
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~  148 (223)
                      .+..     +-....++.|..++..-.+-.. .-..|.++.++.+..
T Consensus        90 ~~h~-----~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           90 EPAR-----ELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             TTHH-----HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHH-----HHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            2222     2234556778777755442222 235677766665554

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=96.77  E-value=0.0019  Score=56.24  Aligned_cols=133  Identities=11%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (223)
                      .++.|+|.|.+|+++++.++.+|++|+++|+.+   +.+         + .+-++.+|-++...|          .+.+.
T Consensus       200 ~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~---~~~---------~-~~~fp~a~~v~~~~p----------~~~~~  256 (362)
T 3on5_A          200 ERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRP---NQC---------E-KHFFPDADEIIVDFP----------ADFLR  256 (362)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHTEEEEEEESCG---GGG---------C-GGGCTTCSEEEESCH----------HHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEECCCc---ccc---------c-cccCCCceEEecCCH----------HHHHh
Confidence            479999999999999999999999999999854   111         1 112345665554444          22233


Q ss_pred             c--CCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEee--------CCCCCCCCCCCCccCCCCeEEcc---CCCCCcH
Q 027408          117 K--MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD--------VWNPQPAPKDHPWRYMPNQAMTP---HVSGTTI  183 (223)
Q Consensus       117 ~--mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lD--------v~~~ep~~~~~~l~~~~nv~~tP---H~a~~t~  183 (223)
                      .  +.+++.+|-++++.-.|...|..+|+. ...+.++=        ..+.+-         .+.-+-+|   -+++-|.
T Consensus       257 ~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~iGSr~R~~rl~~~g~---------~~~ri~~PIGL~Iga~tP  326 (362)
T 3on5_A          257 KFLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGILGSKERTRRLLQNRK---------PPDHLYSPVGLSIDAQGP  326 (362)
T ss_dssp             HSCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEESSCHHHHHHHHTSCC---------CCTTEESSCSCCSCCCSH
T ss_pred             hcCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEEeCCHHHHHHHHhcCC---------cHhheECCCCCCCCCCCH
Confidence            3  456777787888888888888877766 33333321        011110         01124455   3667666


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Q 027408          184 DAQLRYAAGVKDMLDRYFKGED  205 (223)
Q Consensus       184 ~~~~~~~~~~~~~i~~~~~g~~  205 (223)
                      +.   ++..++-+|....+|++
T Consensus       327 ~E---IAvSI~AEiia~~~~~~  345 (362)
T 3on5_A          327 EE---IAISIVAQLIQLIRSRK  345 (362)
T ss_dssp             HH---HHHHHHHHHHHHHHHSC
T ss_pred             HH---HHHHHHHHHHHHHhCCC
Confidence            64   55566767777777764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=96.76  E-value=0.00085  Score=59.91  Aligned_cols=88  Identities=18%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecC---C-----------------------HH
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE---D-----------------------LD   87 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~---~-----------------------l~   87 (223)
                      .|.+|.|+|. |.+|...++.++..|++|++.++++...+.++++|+..+-   +                       +.
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~  307 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIR  307 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHH
Confidence            6899999998 9999999999999999999888766556667777764220   1                       11


Q ss_pred             hhc--ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           88 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        88 e~l--~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ++.  ...|+|+-++..  .    .....+..++++..++.++
T Consensus       308 ~~t~g~g~Dvvid~~G~--~----~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          308 ELTGGEDIDIVFEHPGR--E----TFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHTSCCEEEEEECSCH--H----HHHHHHHHEEEEEEEEESC
T ss_pred             HHhCCCCCcEEEEcCCc--h----hHHHHHHHhhCCcEEEEEe
Confidence            112  368999988872  1    1256677888888888776

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.76  E-value=0.0051  Score=51.39  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=34.5

Q ss_pred             cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .++.||++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999996 8999999999999999999999865

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.75  E-value=0.0046  Score=52.58  Aligned_cols=68  Identities=24%  Similarity=0.268  Sum_probs=45.4

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-ChhHHH------hhCCee-------cCCHHhhcc--cCCEE
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEK------ETGAKF-------EEDLDTMLP--KCDIV   96 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~------~~g~~~-------~~~l~e~l~--~aDvV   96 (223)
                      ...++|.|.|. |.+|+.+++.|...|.+|++.+|+.. ..+...      ..++..       ..++.++++  ++|+|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            34678999997 99999999999999999999999752 221111      123221       123455666  78887


Q ss_pred             EEcCC
Q 027408           97 VVNTP  101 (223)
Q Consensus        97 v~~~p  101 (223)
                      +.+..
T Consensus        88 i~~a~   92 (346)
T 3i6i_A           88 VSTVG   92 (346)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            77665

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.75  E-value=0.002  Score=57.00  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=46.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC--CeecC---CHHhhcccCCEEEE
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--AKFEE---DLDTMLPKCDIVVV   98 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g--~~~~~---~l~e~l~~aDvVv~   98 (223)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|+++|+++..........  ...+.   .+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999999999998764432211100  11112   23455567898875

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.75  E-value=0.0074  Score=52.31  Aligned_cols=93  Identities=22%  Similarity=0.306  Sum_probs=60.1

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCC-CeEEEEcC-CCCChhHH-------HhhCCeecCCHHhhcccCCEEEEcCCCCh
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDR-VKMDPQLE-------KETGAKFEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G-~~V~~~d~-~~~~~~~~-------~~~g~~~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      .-.+||||| .|.+|+.+.+.|.... .++..+.. +..-....       .+..+... +.+++..++|+|++|+|.. 
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~-~~~~~~~~~Dvvf~alp~~-   89 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEF-DPEKVSKNCDVLFTALPAG-   89 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCC-CHHHHHHHCSEEEECCSTT-
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeC-CHHHhhcCCCEEEECCCcH-
Confidence            345899998 5999999999998764 46655543 22111111       11112222 4556667899999999932 


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCCccCH
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDT  135 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~  135 (223)
                           +..+....+ .|+.+||.|..--.+.
T Consensus        90 -----~s~~~~~~~-~g~~VIDlSsdfRl~~  114 (351)
T 1vkn_A           90 -----ASYDLVREL-KGVKIIDLGADFRFDD  114 (351)
T ss_dssp             -----HHHHHHTTC-CSCEEEESSSTTTCSS
T ss_pred             -----HHHHHHHHh-CCCEEEECChhhhCCc
Confidence                 335666666 8999999997655553

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.74  E-value=0.0014  Score=55.66  Aligned_cols=89  Identities=17%  Similarity=0.126  Sum_probs=60.7

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHh-h---c--ccCCEEEEcCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT-M---L--PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e-~---l--~~aDvVv~~~p~  102 (223)
                      .|++|.|+| .|.||..+++.++..|++|++.++++...+.++++|....     .+..+ +   .  ...|+|+.++. 
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-  218 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-  218 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-
Confidence            589999999 7999999999999999999999987544444555554311     11211 1   1  13688877775 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       ..    .....++.++++..++.++.
T Consensus       219 -~~----~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          219 -RD----TWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             -GG----GHHHHHHTEEEEEEEEECCC
T ss_pred             -hH----HHHHHHHHhcCCCEEEEEec
Confidence             22    12566777787777777753

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.74  E-value=0.002  Score=54.73  Aligned_cols=86  Identities=14%  Similarity=0.110  Sum_probs=63.3

Q ss_pred             EEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhh----c-----ccCCEEEEcCCCChhhh
Q 027408           38 TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM----L-----PKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        38 ~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~----l-----~~aDvVv~~~p~~~~t~  107 (223)
                      +|.|+|. |.+|...++.++..|++|++.++++...+.++++|...+-+..+.    +     ...|+|+-++.. +   
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~-~---  228 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG-K---  228 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCT-H---
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcH-H---
Confidence            7999998 999999999999999999999988766777777776432222221    1     246888888762 2   


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        .-.+.++.++++..++.++.
T Consensus       229 --~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          229 --QLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             --HHHHHHTTEEEEEEEEECCC
T ss_pred             --HHHHHHHhhcCCCEEEEEec
Confidence              12567788888888887764

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.73  E-value=0.0015  Score=55.93  Aligned_cols=89  Identities=18%  Similarity=0.135  Sum_probs=58.2

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHh----hc--ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----~l--~~aDvVv~~~p~  102 (223)
                      .|++|.|+|. |.+|..+++.++..|++|++.++++...+.++++|....     .++.+    +.  ...|+|+.++. 
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-  244 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-  244 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            5899999999 999999999999999999999987544444555554211     11111    11  14577766665 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .+     .....++.++++..++.++.
T Consensus       245 ~~-----~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          245 AL-----YFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             SS-----SHHHHHHHEEEEEEEEESSC
T ss_pred             HH-----HHHHHHHhhccCCEEEEEec
Confidence            11     12455566666666666653

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.73  E-value=0.002  Score=54.51  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (223)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            46899999999999999999999998886 688888754

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.73  E-value=0.0012  Score=56.54  Aligned_cols=89  Identities=16%  Similarity=0.109  Sum_probs=63.0

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec---CCHHhhc------ccCCEEEEcCCCCh
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDLDTML------PKCDIVVVNTPLTE  104 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~l~e~l------~~aDvVv~~~p~~~  104 (223)
                      .|++|.|+| .|.+|...++.++..|++|++. .++...+.++++|...+   .++.+.+      ...|+|+-++.. +
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~-~  227 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGG-P  227 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCT-H
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCc-H
Confidence            689999999 7999999999999999999988 55544556666776432   1222222      257888887762 1


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                           .....++.++++..++.++..
T Consensus       228 -----~~~~~~~~l~~~G~iv~~g~~  248 (343)
T 3gaz_A          228 -----VLDASFSAVKRFGHVVSCLGW  248 (343)
T ss_dssp             -----HHHHHHHHEEEEEEEEESCCC
T ss_pred             -----HHHHHHHHHhcCCeEEEEccc
Confidence                 125667778888888877543

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.73  E-value=0.0022  Score=52.97  Aligned_cols=38  Identities=21%  Similarity=0.058  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      .+.||++.|.|.   |.||+.+|+.|...|++|++.+|+..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999997   69999999999999999999998763

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.73  E-value=0.0018  Score=55.74  Aligned_cols=97  Identities=16%  Similarity=0.186  Sum_probs=59.6

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHh-hCCee-----c---CCHHhhcccCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE-TGAKF-----E---EDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~-~g~~~-----~---~~l~e~l~~aDvVv~~~p~  102 (223)
                      .+++|.|.|. |.+|+.+++.|...|++|++.+|+....  +.... .++..     .   .++.++++.+|+|+.++..
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            4688999995 9999999999998999999999876443  11111 12211     1   2355678899999876653


Q ss_pred             ChhhhhcccHHHHhcCCC-C--cEEEEcCCCC
Q 027408          103 TEKTRGMFDKDRIAKMKK-G--VLIVNNARGA  131 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~-g--a~ivn~srg~  131 (223)
                      ............+..+++ +  ..+|++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            211111222334433322 2  4677777653

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.71  E-value=0.0018  Score=57.64  Aligned_cols=112  Identities=14%  Similarity=0.152  Sum_probs=69.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhhCCeec--CCHHhhcccCCEEEEcCC---CChh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTP---LTEK  105 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~e~l~~aDvVv~~~p---~~~~  105 (223)
                      ++.+|+|.|||.|..|.+.|+.|+..|++|.++|......  ...+ .|+...  ....+.+..+|.|++...   .+|.
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~   80 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPS   80 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHH
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHH
Confidence            3678999999999999999999999999999999765332  2223 455432  112455668999988742   2232


Q ss_pred             hhh-------cccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          106 TRG-------MFDK-DRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       106 t~~-------~i~~-~~~-~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      ...       ++.+ +.+ ..++...+-|--+.|+--...-|...|++.
T Consensus        81 ~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~  129 (439)
T 2x5o_A           81 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  129 (439)
T ss_dssp             HHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            221       2222 112 224433444555567766555566666654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.70  E-value=0.0019  Score=55.66  Aligned_cols=89  Identities=12%  Similarity=0.059  Sum_probs=60.6

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHh----hc--ccCCEEEEcCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----~l--~~aDvVv~~~p~  102 (223)
                      .|++|.|+| .|.||..+++.++..|++|++.++++...+.++++|....     .+..+    ..  ...|+|+.++..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~  241 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGG  241 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCG
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCc
Confidence            589999999 7999999999999999999999987544445555554321     11111    11  146888777752


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       +     .....++.++++..++.++.
T Consensus       242 -~-----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          242 -S-----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             -G-----GHHHHHHHEEEEEEEEECCC
T ss_pred             -h-----HHHHHHHhccCCCEEEEEec
Confidence             1     12455677777777777753

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.70  E-value=0.0015  Score=53.77  Aligned_cols=64  Identities=16%  Similarity=0.280  Sum_probs=45.5

Q ss_pred             EEEEEcc-cHHHHHHHHHHccC--CCeEEEEcCCCCChhHHHhhCCee-------cCCHHhhcccCCEEEEcCC
Q 027408           38 TVGTVGC-GRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        38 ~igIiG~-G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p  101 (223)
                      +|.|.|. |.||+.+++.|...  |++|.+.+|++...+.....++..       .++++++++++|+|+.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            4789996 99999999999987  999999998764332222223321       1345677889999987765

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.69  E-value=0.0011  Score=57.19  Aligned_cols=88  Identities=14%  Similarity=0.171  Sum_probs=49.6

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccC---CCeEEEEc-CCCCChhH-HHhhCCeecCCHH-hhcccCCEEEEcCCCChhhhhc
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPF---NCNLLYHD-RVKMDPQL-EKETGAKFEEDLD-TMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~---G~~V~~~d-~~~~~~~~-~~~~g~~~~~~l~-e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      .+|+|+| .|.+|+.+.+.|...   ..++.++. ++...... .....+.. .+++ +.+.++|+|+.|+|.....   
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~-~~~~~~~~~~vDvVf~a~g~~~s~---   79 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRV-QNVEEFDWSQVHIALFSAGGELSA---   79 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEE-EEGGGCCGGGCSEEEECSCHHHHH---
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEE-ecCChHHhcCCCEEEECCCchHHH---
Confidence            5899999 999999999998765   34666554 32210100 00001111 1111 2346899999999932111   


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg  130 (223)
                        +..-..++.|+.+|+.+..
T Consensus        80 --~~a~~~~~~G~~vId~s~~   98 (336)
T 2r00_A           80 --KWAPIAAEAGVVVIDNTSH   98 (336)
T ss_dssp             --HHHHHHHHTTCEEEECSST
T ss_pred             --HHHHHHHHcCCEEEEcCCc
Confidence              1111223567888887743

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.67  E-value=0.0058  Score=54.43  Aligned_cols=84  Identities=15%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             CCCCCEEEEEccc----------HHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCC
Q 027408           33 DLEGKTVGTVGCG----------RIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        33 ~l~g~~igIiG~G----------~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .+.|++|+|+|+-          .-...+++.|... |.+|.+|||.-...        ....++++.++++|+|+++++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~--------~~~~~~~~~~~~ad~vvi~t~  383 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD--------FVEHDMSHAVKDASLVLILSD  383 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT--------TBCSTTHHHHTTCSEEEECSC
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc--------cccCCHHHHHhCCCEEEEecC
Confidence            4799999999963          3468899999998 99999999965321        234678999999999999987


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEc
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      -. +.+. ++.+.++.|+ ..+|+|.
T Consensus       384 ~~-~f~~-~d~~~~~~~~-~~~i~D~  406 (431)
T 3ojo_A          384 HS-EFKN-LSDSHFDKMK-HKVIFDT  406 (431)
T ss_dssp             CG-GGTS-CCGGGGTTCS-SCEEEES
T ss_pred             CH-HHhc-cCHHHHHhCC-CCEEEEC
Confidence            32 2222 2333446666 5678876

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=96.63  E-value=0.0053  Score=51.98  Aligned_cols=65  Identities=17%  Similarity=0.212  Sum_probs=43.0

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCC--eEEEEcC--CCCChhH-HHhh--------CCeecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDR--VKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~--~V~~~d~--~~~~~~~-~~~~--------g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      +||+|+| .|.+|..++..|...|.  ++..+|+  .....+. ..++        .+....+..+.++++|+|+++..
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag   79 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG   79 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCC
Confidence            5899999 99999999999976665  6888998  4311110 1110        11111122567899999999875

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.61  E-value=0.0017  Score=55.05  Aligned_cols=86  Identities=16%  Similarity=0.133  Sum_probs=59.7

Q ss_pred             EEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec---CCH-Hhhc-----ccCCEEEEcCCCChhhh
Q 027408           38 TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDL-DTML-----PKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        38 ~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~l-~e~l-----~~aDvVv~~~p~~~~t~  107 (223)
                      +|.|+|. |.+|...++.++..|++|++.++++...+.++++|...+   .+. .+.+     ...|+|+-++.. +   
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~-~---  227 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG-R---  227 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT-T---
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcH-H---
Confidence            7999998 999999999999999999999988766777777775321   111 1111     236777777652 1   


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        .....++.++++..++.++.
T Consensus       228 --~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          228 --TLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             --THHHHHHTEEEEEEEEECSC
T ss_pred             --HHHHHHHhhccCCEEEEEee
Confidence              12566777777777777653

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.60  E-value=0.0034  Score=52.62  Aligned_cols=38  Identities=16%  Similarity=0.101  Sum_probs=33.9

Q ss_pred             cCCCCCEEEEEcc-cH--HHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~--iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ..+.||++.|.|. |.  ||+++|+.|...|++|++.+++.
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~   67 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD   67 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999997 45  99999999999999999999864

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.60  E-value=0.0018  Score=55.07  Aligned_cols=88  Identities=9%  Similarity=0.151  Sum_probs=56.6

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHh----hc--ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----~l--~~aDvVv~~~p~  102 (223)
                      .|++|.|+|. |.||..+++.++..|++|++.+++....+.++++|....     .+..+    ..  ...|+|+.++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~  224 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK  224 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcH
Confidence            5889999995 999999999999999999999987533344444553211     11111    11  135766666652


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                            ......++.++++..++.++
T Consensus       225 ------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          225 ------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             ------TTHHHHHHTEEEEEEEEECC
T ss_pred             ------HHHHHHHHhhccCCEEEEEe
Confidence                  11245566666666666664

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.59  E-value=0.0013  Score=55.83  Aligned_cols=72  Identities=13%  Similarity=0.078  Sum_probs=46.5

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhhCCeecCCHHhhcccCCEEEEcCCC
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ..++.+|+|.|.|. |.||+.+++.|...|++|++.+|+...... ....++....+++++++.+|+|+-+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            45789999999997 999999999999999999999987532100 0001111223456778899999877653

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.58  E-value=0.0019  Score=55.58  Aligned_cols=88  Identities=14%  Similarity=0.143  Sum_probs=58.1

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhh----cc--cCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM----LP--KCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~----l~--~aDvVv~~~p~  102 (223)
                      .|++|.|.|. |.+|..+++.++..|++|++.++++...+.++++|....     .+..+.    ..  ..|+|+.++..
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~  249 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  249 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCCh
Confidence            5899999998 999999999999999999999987544445555554311     111111    11  46777766541


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                        .   . ....++.++++..++.++
T Consensus       250 --~---~-~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          250 --V---N-LSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             --H---H-HHHHHHHEEEEEEEEECC
T ss_pred             --H---H-HHHHHHhccCCCEEEEEe
Confidence              1   1 145566677777776665

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.58  E-value=0.0022  Score=55.27  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=25.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccC---CCeEEEEcC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF---NCNLLYHDR   67 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~---G~~V~~~d~   67 (223)
                      .+|||+|+|.||+.+.+.+...   .++|.+++.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            4799999999999999998654   578775543

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.57  E-value=0.0036  Score=51.97  Aligned_cols=67  Identities=19%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC-CC--h-hHH------HhhCCee-------cCCHHhhcccCCEEE
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK-MD--P-QLE------KETGAKF-------EEDLDTMLPKCDIVV   97 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~-~~--~-~~~------~~~g~~~-------~~~l~e~l~~aDvVv   97 (223)
                      +++|.|.|. |.+|+.+++.|...|++|.+.+|+. ..  . +..      ...++..       .+++.++++.+|+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            578999996 9999999999998899999999865 11  1 111      1223321       124556677889888


Q ss_pred             EcCCC
Q 027408           98 VNTPL  102 (223)
Q Consensus        98 ~~~p~  102 (223)
                      .+.+.
T Consensus        82 ~~a~~   86 (307)
T 2gas_A           82 CAAGR   86 (307)
T ss_dssp             ECSSS
T ss_pred             ECCcc
Confidence            77763

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.57  E-value=0.0027  Score=53.36  Aligned_cols=69  Identities=14%  Similarity=0.083  Sum_probs=48.9

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHh------hCCe--------ecCCHHhhcccCCEE
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKE------TGAK--------FEEDLDTMLPKCDIV   96 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~------~g~~--------~~~~l~e~l~~aDvV   96 (223)
                      .+.+++|.|.|. |.||+.+++.|...|++|++.+|+....+. ...      .++.        ...+++++++.+|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            468999999997 999999999999999999999986422111 110      1121        123455667789999


Q ss_pred             EEcCC
Q 027408           97 VVNTP  101 (223)
Q Consensus        97 v~~~p  101 (223)
                      +-+..
T Consensus        88 ih~A~   92 (342)
T 1y1p_A           88 AHIAS   92 (342)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            87764

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=96.55  E-value=0.0048  Score=52.82  Aligned_cols=66  Identities=20%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCC----CCChh-----HHHh-h----CCeecCCHHhhcccC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRV----KMDPQ-----LEKE-T----GAKFEEDLDTMLPKC   93 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~----~~~~~-----~~~~-~----g~~~~~~l~e~l~~a   93 (223)
                      .+||+|+|. |.+|+.++..|...|+       +|..+|+.    ....+     +... .    .+....++.+.+++|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            468999997 9999999999987775       79999986    21011     1110 0    112236788999999


Q ss_pred             CEEEEcCC
Q 027408           94 DIVVVNTP  101 (223)
Q Consensus        94 DvVv~~~p  101 (223)
                      |+|+.+..
T Consensus        85 D~Vi~~ag   92 (329)
T 1b8p_A           85 DVALLVGA   92 (329)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEeCC
Confidence            99998764

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=96.54  E-value=0.012  Score=50.60  Aligned_cols=88  Identities=13%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCC----hhHHHhhCCeecCC--------HHhhcc---cCCEEEE
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD----PQLEKETGAKFEED--------LDTMLP---KCDIVVV   98 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~----~~~~~~~g~~~~~~--------l~e~l~---~aDvVv~   98 (223)
                      .|.+|.|+|. |.+|...++.++.+|+++++...+...    .+.++++|...+-+        +.++..   ..|+|+-
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid  246 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALN  246 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEE
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEE
Confidence            6899999998 999999999999999987665543322    24556777643212        222222   3799998


Q ss_pred             cCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ++. .+.+     .+.++.++++..++.++
T Consensus       247 ~~g-~~~~-----~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          247 CVG-GKSS-----TELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSC-HHHH-----HHHHTTSCTTCEEEECC
T ss_pred             CCC-cHHH-----HHHHHhhCCCCEEEEEe
Confidence            886 1221     35688899998888875

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=96.53  E-value=0.0027  Score=54.84  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=24.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccC---CCeEEEEc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF---NCNLLYHD   66 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~---G~~V~~~d   66 (223)
                      .+|||+|+|+||+.+.+.+...   +++|.+++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            3899999999999999998754   36776554

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.53  E-value=0.003  Score=54.52  Aligned_cols=93  Identities=14%  Similarity=0.196  Sum_probs=62.5

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCC-------------------hhHH-H---hh--CC--eec
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-------------------PQLE-K---ET--GA--KFE   83 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-------------------~~~~-~---~~--g~--~~~   83 (223)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|.....                   .+.+ +   +.  ++  ...
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~  109 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  109 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence            36899999999999999999999999997 58888874310                   0111 1   11  11  111


Q ss_pred             ---------------------CCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           84 ---------------------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        84 ---------------------~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                                           .++.++++++|+|+.++- +.+++..++......   +..+|+.+
T Consensus       110 ~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~~---~~plI~aa  171 (340)
T 3rui_A          110 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  171 (340)
T ss_dssp             CCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHHT---TCEEEEEE
T ss_pred             eccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHHc---CCcEEEee
Confidence                                 124577889999987765 566777777665543   34566654

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.52  E-value=0.0064  Score=51.18  Aligned_cols=66  Identities=15%  Similarity=0.162  Sum_probs=46.7

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-------cCCHHhhcccCCEEEEcCC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p  101 (223)
                      .++|.|.|. |.||+.+++.|...|++|++++|+....+.....++..       ..+++++++.+|+|+.+..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            368999995 99999999999999999999998764332222223321       1245567888999987765

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.51  E-value=0.0027  Score=54.57  Aligned_cols=89  Identities=18%  Similarity=0.176  Sum_probs=60.2

Q ss_pred             CC--CEEEEEcc-cHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-hCCeec-----CCHHhhcc-----cCCEEEEc
Q 027408           35 EG--KTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTMLP-----KCDIVVVN   99 (223)
Q Consensus        35 ~g--~~igIiG~-G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~-----~~l~e~l~-----~aDvVv~~   99 (223)
                      .|  ++|.|.|. |.||..+++.++..|+ +|++.+++....+...+ +|....     .+..+.+.     ..|+|+.+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~  237 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN  237 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEEC
Confidence            46  89999998 9999999999999999 99999986533344443 554211     12222221     36888777


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +.  .    ......++.++++..++.++.
T Consensus       238 ~G--~----~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          238 VG--G----NISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             CC--H----HHHHHHHHTEEEEEEEEECCC
T ss_pred             CC--H----HHHHHHHHHhccCcEEEEECC
Confidence            75  1    122566777888777777754

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.50  E-value=0.0062  Score=50.54  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+.||++.|.|.   |.||+.+|+.|...|++|++.+|+.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   57 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP   57 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            488999999997   5999999999999999999999865

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.50  E-value=0.019  Score=47.43  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=34.1

Q ss_pred             ccCCCCCEEEEEcc-cH--HHHHHHHHHccCCCeEEEEcCCC
Q 027408           31 AYDLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~--iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ...+.||++.|.|. |.  ||+++|+.|...|++|++.+++.
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            45789999999996 45  99999999999999999999875

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.49  E-value=0.0016  Score=60.18  Aligned_cols=37  Identities=16%  Similarity=0.285  Sum_probs=33.1

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~   68 (223)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46889999999999999999999999998 58888754

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.49  E-value=0.0036  Score=51.49  Aligned_cols=66  Identities=15%  Similarity=0.234  Sum_probs=47.5

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccC--CCeEEEEcCCCCChhHHHhhCCee-------cCCHHhhcccCCEEEEcCCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~e~l~~aDvVv~~~p~  102 (223)
                      |+|.|.|. |.||+.+++.|...  |++|.+.+|+....+.....++..       ..+++++++++|+|+.+...
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            57899996 99999999999988  999999998764332222223321       13456778899999877653

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.49  E-value=0.0034  Score=52.40  Aligned_cols=65  Identities=11%  Similarity=0.178  Sum_probs=40.2

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhccc--CCEEEEcCC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~--aDvVv~~~p  101 (223)
                      +++|.|.|. |.||+.+++.|...|++|++.+|+..... ....++....+++++++.  +|+|+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            689999997 99999999999999999999997642211 111122223455666664  899987764

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.48  E-value=0.0073  Score=54.99  Aligned_cols=113  Identities=14%  Similarity=0.117  Sum_probs=71.9

Q ss_pred             CCCCEEEEEcccHHHHH-HHHHHccCCCeEEEEcCCCCCh--hHHHhhCCeec--CCHHhhcccCCEEEEc--CC-CChh
Q 027408           34 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVN--TP-LTEK  105 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~-iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~e~l~~aDvVv~~--~p-~~~~  105 (223)
                      +.+++|-|||.|.+|.+ +|+.|+..|++|.++|......  +..++.|+...  .+.+.+..++|+||..  +| .+|.
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~   96 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV   96 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence            57899999999999997 7888999999999999864322  23445576543  2445555679999875  33 3343


Q ss_pred             hhh-------cccH-HHHhc--CCCC-cEEEEcCCCCccCHHHHHHHHHhCC
Q 027408          106 TRG-------MFDK-DRIAK--MKKG-VLIVNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       106 t~~-------~i~~-~~~~~--mk~g-a~ivn~srg~~vd~~al~~~L~~g~  146 (223)
                      ...       ++.+ +.+..  +++. .+-|--+.|+.-...-+...|+...
T Consensus        97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G  148 (524)
T 3hn7_A           97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG  148 (524)
T ss_dssp             HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            221       2333 33333  3333 3446666788776666777777643

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.47  E-value=0.0092  Score=49.94  Aligned_cols=65  Identities=20%  Similarity=0.275  Sum_probs=47.1

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC-ChhHH---HhhCCee-------cCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLE---KETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~---~~~g~~~-------~~~l~e~l~~aDvVv~~~p  101 (223)
                      ++|.|.|. |.+|+.+++.|...|++|.+.+|+.. ..+..   ...+++.       .+++.++++.+|+|+.+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            58999995 99999999999999999999998763 22211   1234332       1245567788999887776

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.46  E-value=0.0072  Score=49.60  Aligned_cols=38  Identities=24%  Similarity=0.310  Sum_probs=34.4

Q ss_pred             cCCCCCEEEEEccc---HHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~G---~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+|+||++.|-|.+   .||+++|+.|...|++|++.+|+.
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~   42 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE   42 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            36899999999974   699999999999999999999875

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.45  E-value=0.0077  Score=49.72  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=34.5

Q ss_pred             ccCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCC
Q 027408           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        31 ~~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      ...+.||++.|.|. |.||+.+|+.|...|++|++++++
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            34689999999996 799999999999999999999986

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.45  E-value=0.0023  Score=51.54  Aligned_cols=65  Identities=20%  Similarity=0.181  Sum_probs=43.5

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcc----cCCEEEEcCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP----KCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~----~aDvVv~~~p  101 (223)
                      |+|.|.|. |.||+.+++.|...|++|++.+|+....+......+....+++++++    ..|+|+.+..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag   71 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAG   71 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCC
Confidence            57899996 99999999999999999999998753221100000111123444444    7899987764

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=96.45  E-value=0.0051  Score=52.89  Aligned_cols=30  Identities=23%  Similarity=0.510  Sum_probs=24.5

Q ss_pred             EEEEEcccHHHHHHHHHHccC-CCeEEEEcC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR   67 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~-G~~V~~~d~   67 (223)
                      +|||+|+|.||+.+.+.+... .++|.+.+-
T Consensus         3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~   33 (330)
T 1gad_O            3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND   33 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCeEEEEEcC
Confidence            799999999999999998654 567766553

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.44  E-value=0.0055  Score=51.16  Aligned_cols=65  Identities=18%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             CCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----hCCeecCCHHhhcccCCEEEEcCCC
Q 027408           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        36 g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      +++|.|.| .|.||+.+++.|...|.+|++.+|++...+ ...     .++. ..++.++++++|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47899999 599999999999999999999999743222 111     1122 34566788899999887653

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.43  E-value=0.0022  Score=52.63  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+.||++.|.|.   |.||+.+|+.|...|++|++.+|+.
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   44 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            578999999997   6999999999999999999999875

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.43  E-value=0.0047  Score=50.84  Aligned_cols=37  Identities=30%  Similarity=0.397  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   40 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999995 8999999999999999999999874

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=96.43  E-value=0.0062  Score=52.21  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=65.7

Q ss_pred             CEEEEEcccHHHHHHHHHHcc-------CCCeEE-EEcCCCC------Ch----hHHHhhC-Ce--ecCCHHhhcc--cC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKP-------FNCNLL-YHDRVKM------DP----QLEKETG-AK--FEEDLDTMLP--KC   93 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~-------~G~~V~-~~d~~~~------~~----~~~~~~g-~~--~~~~l~e~l~--~a   93 (223)
                      .+|+|+|+|.||+.+++.+..       .+.+|. ++|++..      ..    +.....+ +.  .+ +.++++.  +.
T Consensus         5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~~~i   83 (325)
T 3ing_A            5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMGEAA   83 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTTSCC
T ss_pred             EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcCCCC
Confidence            479999999999999999865       345554 5565431      01    1112223 21  12 5677774  58


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCcc
Q 027408           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (223)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~v-d~~al~~~L~~g~i~  148 (223)
                      |+|+.|+|..... ...-+-....++.|..+|....+.+. .-+.|.++.++.+..
T Consensus        84 DvVVe~T~~~~~~-~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~  138 (325)
T 3ing_A           84 DLLVDCTPASRDG-VREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKY  138 (325)
T ss_dssp             SEEEECCCCCSSS-HHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CEEEECCCCcccc-chHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCe
Confidence            9999999943111 11113455667788888877665442 344566655555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	9e-37
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	5e-31
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	3e-26
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	3e-26
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	6e-24
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	1e-14
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	3e-14
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	6e-12
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	2e-06
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	0.002

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  125 bits (314), Expect = 9e-37
 Identities = 88/178 (49%), Positives = 110/178 (61%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ +L
Sbjct: 11  ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 70

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+G 
Sbjct: 71  HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA 130

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
            IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 131 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 188

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  110 bits (276), Expect = 5e-31
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 2/179 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R    G   + +  W     +      L+ KT+G  G G IG+ L +R + F+ +
Sbjct: 13  LLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMD 72

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + Y D  +     E    A F + LD++L       +N P T +TR  F+K  I  + +G
Sbjct: 73  IDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG 132

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
            ++VN ARG ++D + VV A  +G +A    DV+  +P   +  +  +PN  + PH+  
Sbjct: 133 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGS 190

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 98.1 bits (243), Expect = 3e-26
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 5/176 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   R        +    W  +  +       GKTVG VG GRIG+L+ QR+  F   +
Sbjct: 13  LLAASRQIPAADASLREHTWKRSSFSGTEIF--GKTVGVVGLGRIGQLVAQRIAAFGAYV 70

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D   + P    + G +     D +L + D + V+ P T +T G+ DK+ +AK K GV
Sbjct: 71  VAYDP-YVSPARAAQLGIELLSL-DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV 128

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
           +IVN ARG ++D  A+ DA + GH+     DV+  +P   D P   +    +TPH+
Sbjct: 129 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPHL 183

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 98.1 bits (243), Expect = 3e-26
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L+L+R     + +   G  N   +A  +++  GK +G +G G IG  L    +     +
Sbjct: 13  LLLLLRGVPEANAKAHRGVGN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYV 70

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            ++D     P       A   + L  +L   D+V ++ P    T+ M     I+ MK G 
Sbjct: 71  YFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 126

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHV 178
           L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P     N  +TPH+
Sbjct: 127 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 186

Query: 179 SG 180
            G
Sbjct: 187 GG 188

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 6e-24
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 7/182 (3%)

Query: 3   ILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           IL L R     H  +  G        +  VA  A  + G+T+G +G GR+G+ +  R K 
Sbjct: 11  ILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKA 70

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F  N+L++D   +   +E+  G +    L  +L   D V ++  L E    + +   + +
Sbjct: 71  FGFNVLFYDP-YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 129

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTP 176
           M++G  +VN ARG ++D +A+  A   G I G + DV   +P      P +  PN   TP
Sbjct: 130 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 189

Query: 177 HV 178
           H 
Sbjct: 190 HA 191

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 67.5 bits (163), Expect = 1e-14
 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 18/191 (9%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           ++   ++R       +V   +   A       ++  + VG VG G IG++ +Q ++ F  
Sbjct: 10  IQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGA 67

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++ +D  +       E    + + LD +  + D++ ++ P       M + + IAKMK+
Sbjct: 68  KVITYDIFRNPEL---EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ 124

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY------------ 168
            V+IVN +RG ++DT AV+    SG I GY+ DV+  +    +  W              
Sbjct: 125 DVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLI 184

Query: 169 -MPNQAMTPHV 178
             PN  +TP  
Sbjct: 185 ARPNVLVTPKT 195

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 66.8 bits (161), Expect = 3e-14
 Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 18/191 (9%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
            L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++  K F   +
Sbjct: 13  TLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKV 71

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D   M               L+ +  + D++ ++ P  E+   + ++     MK G 
Sbjct: 72  IAYDPYPMKGDHPD----FDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGA 127

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA-------------PKDHPWRYM 169
           +++N AR  ++DTQA++    SG +AG   D +  +               P       M
Sbjct: 128 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 187

Query: 170 PNQAMTPHVSG 180
           PN  ++PH++ 
Sbjct: 188 PNVVLSPHIAY 198

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 60.2 bits (144), Expect = 6e-12
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 10/179 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   +  +    ++  G++           ++G+ V  +G G IG  + + L      +
Sbjct: 12  LLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQV 68

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
               R   +         +F   L+  L +    V   PL + TRG+     +A M +  
Sbjct: 69  RGFSRTPKEGP------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDA 122

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-NPQPAPKDHPWRYMPNQAMTPHVSG 180
           + VN  R  ++D   V+          ++ DVW       KD  +  +PN   TP V+G
Sbjct: 123 VFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 181

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 30  RAYDLE--GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
           RA D+   GK     G G +GK   Q L+ F   ++  +   ++        A  E    
Sbjct: 16  RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINA-----LQAAMEGYEV 70

Query: 88  TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN-NARGAIMDTQAVVDACSS 144
           T + +          T     +       +MK   ++ N       +D + + +    
Sbjct: 71  TTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE 128

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 2/133 (1%)

Query: 39  VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 98
           VG +G G +GK + + L     +L+  DR           GA+       +  +CD+++ 
Sbjct: 3   VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62

Query: 99  NTPLTEKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156
             P +   + +   +   I   K G ++++ +  A + ++ + DA  +  +      V  
Sbjct: 63  MLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG 122

Query: 157 PQPAPKDHPWRYM 169
            +P   D     M
Sbjct: 123 GEPKAIDGTLSVM 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.7
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.66
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.63
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.58
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.57
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.55
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.46
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.38
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.34
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.25
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.21
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.18
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.11
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.07
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.05
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.96
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.94
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.93
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.93
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.92
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.87
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.8
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.76
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.7
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.69
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.69
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.68
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.67
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.51
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.47
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.45
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.43
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.43
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.4
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.36
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.31
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.29
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.26
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.25
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.2
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.2
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.16
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.15
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.15
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.12
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.09
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.07
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	98.06
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.04
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.04
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	98.01
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.97
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.96
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.92
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.91
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	97.88
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.85
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.85
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.83
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.83
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	97.83
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.82
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.82
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.82
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.82
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.81
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.78
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.78
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.77
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.77
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.77
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.76
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.74
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.73
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.71
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.71
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.71
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.7
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.7
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.68
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.67
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.64
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.63
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.63
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.59
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.56
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.56
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.56
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	97.54
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.53
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.53
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.51
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.51
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.49
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.48
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.46
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	97.46
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.45
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.44
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.42
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.41
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.39
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.32
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	97.3
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.26
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.26
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	97.25
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.23
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.22
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.17
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.16
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.15
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.15
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	97.15
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.15
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.15
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	97.09
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.08
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.04
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.03
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.03
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.03
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.02
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.0
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.93
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.92
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	96.88
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.88
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.83
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.83
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.82
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.8
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.78
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	96.74
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.74
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.69
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.67
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.66
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.65
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.64
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	96.63
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	96.61
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.58
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.54
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.5
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.47
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.46
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.46
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.43
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.43
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.43
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.43
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.4
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.4
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.39
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.37
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.37
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.36
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.26
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.26
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.25
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.25
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.2
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.19
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	96.18
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.14
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	96.14
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.13
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.13
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.12
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.1
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.1
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.09
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.08
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.06
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.05
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.04
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.03
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.03
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.03
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.01
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.01
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.0
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.0
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.99
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.99
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.96
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.95
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.9
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.89
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.86
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.79
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.78
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.78
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.71
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	95.7
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.69
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	95.66
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.64
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	95.63
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.58
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.57
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.56
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.56
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.54
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.54
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	95.54
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.53
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.53
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.53
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.52
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.52
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.45
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.42
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.42
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.41
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.41
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.39
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.38
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	95.37
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.34
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.33
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	95.31
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	95.27
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.27
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.26
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.26
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.21
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	95.2
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.2
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.15
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	95.14
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.13
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.12
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.03
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.98
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	94.96
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.86
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.82
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.79
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.77
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.73
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.53
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.49
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.38
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.37
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.33
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.23
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.19
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	94.12
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.94
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.89
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.86
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	93.84
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	93.82
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.63
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.62
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.61
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.45
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.43
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.35
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.3
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	93.28
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	93.26
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.26
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.16
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	93.1
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.09
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.09
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	93.0
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.75
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.65
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.46
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	92.44
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.33
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.26
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.99
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.92
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.88
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	91.86
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.74
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.72
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.69
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	91.64
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.61
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	91.6
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	91.41
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.26
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.22
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.21
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.2
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	91.12
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	90.9
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	90.87
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.83
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.81
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	90.8
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.79
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.67
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.6
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	90.59
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	90.57
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	90.52
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.51
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.43
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	90.43
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.25
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.22
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.1
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.01
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.91
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.57
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.42
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	89.3
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	89.29
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	89.05
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	88.85
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	88.72
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	88.7
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	88.59
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	88.59
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.54
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	88.41
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	88.32
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.17
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	88.08
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.01
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.81
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	87.67
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	87.64
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	87.61
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	87.54
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.02
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	86.96
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	86.96
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	86.96
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.85
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	86.76
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	86.73
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.68
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.63
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	86.41
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.39
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	86.1
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	86.04
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	86.02
d1q7ea_	417	Hypothetical protein YfdW {Escherichia coli [TaxId	85.91
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	85.87
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	85.53
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	85.53
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	85.29
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	84.98
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	84.74
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	84.23
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	84.13
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	83.9
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	83.69
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.61
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	83.3
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.79
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	82.38
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	82.08
d1d4aa_	273	NAD(P)H:quinone reductase {Human (Homo sapiens) [T	81.85
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	81.54
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	81.49
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	81.23
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	80.76
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	80.62
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	80.1

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=1.7e-50  Score=325.00  Aligned_cols=180  Identities=28%  Similarity=0.462  Sum_probs=164.4

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccC-cccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~-~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (223)
                      +|||+++|++.++++.+++|.|... .....++++.|+++||||+|+||+.+|++++.||++|.+||+............
T Consensus        11 ~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~   90 (191)
T d1gdha1          11 LLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQ   90 (191)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHT
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccccccchhhccc
Confidence            4799999999999999999999643 233457899999999999999999999999999999999999775555555555


Q ss_pred             CeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 027408           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (223)
Q Consensus        80 ~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep  159 (223)
                      ....+++++++++||+|++|+|+|++|+++|+++.|+.||+|+++||+|||++||++||+++|++|++.+|+||||++||
T Consensus        91 ~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~EP  170 (191)
T d1gdha1          91 ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP  170 (191)
T ss_dssp             CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             ccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCCC
Confidence            66667999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCCCeEEccCCCCC
Q 027408          160 APKDHPWRYMPNQAMTPHVSGT  181 (223)
Q Consensus       160 ~~~~~~l~~~~nv~~tPH~a~~  181 (223)
                       +.++|||.+|||++|||+|++
T Consensus       171 -~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         171 -NINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             -SCCTTGGGCTTEEECSSCTTC
T ss_pred             -CCCchHHcCCCEEECCccccC
Confidence             457899999999999999974

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=1.5e-50  Score=324.78  Aligned_cols=180  Identities=49%  Similarity=0.888  Sum_probs=168.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      +|||+++|++..+++.+++|.|........+++|.|++|||+|+|+||+.+|+++++||++|.+||+...........++
T Consensus         9 ~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~   88 (188)
T d2naca1           9 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL   88 (188)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC
T ss_pred             HHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccc
Confidence            47999999999999999999997543333567899999999999999999999999999999999998767777777778


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.+|+||||++||.
T Consensus        89 ~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV~~~EP~  168 (188)
T d2naca1          89 TWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPA  168 (188)
T ss_dssp             EECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSC
T ss_pred             cccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeCCCCCCC
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEccCCCC
Q 027408          161 PKDHPWRYMPNQAMTPHVSG  180 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a~  180 (223)
                      +.++||+.+||+++|||+||
T Consensus       169 ~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         169 PKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             CTTCGGGTSTTBCCCCSCTT
T ss_pred             CCCChHHcCCCeEEccccCc
Confidence            99999999999999999997

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.3e-50  Score=321.71  Aligned_cols=174  Identities=33%  Similarity=0.576  Sum_probs=160.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ||||++.|++..+++.++++.|.+..  ..+.++.|+++||+|+|.||+.+|+++++|||+|++||++. ..+.....++
T Consensus        11 ~liL~~~R~i~~~~~~~~~~~W~~~~--~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~-~~~~~~~~~~   87 (184)
T d1ygya1          11 ALLLAASRQIPAADASLREHTWKRSS--FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV-SPARAAQLGI   87 (184)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCGGG--CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS-CHHHHHHHTC
T ss_pred             HHHHHHHcCHHHHHHHHHhCCCCccc--cccccccceeeeeccccchhHHHHHHhhhccceEEeecCCC-ChhHHhhcCc
Confidence            58999999999999999999998654  34779999999999999999999999999999999999865 3444455566


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      .. .+++|++++||+|++|+|+|++|+++|+++.|+.||+++++||+|||++||++||+++|++|+|.+|+||||++||+
T Consensus        88 ~~-~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~~~EP~  166 (184)
T d1ygya1          88 EL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC  166 (184)
T ss_dssp             EE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC
T ss_pred             ee-ccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCCCCCCC
Confidence            64 58999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCccCCCCeEEccCCC
Q 027408          161 PKDHPWRYMPNQAMTPHVS  179 (223)
Q Consensus       161 ~~~~~l~~~~nv~~tPH~a  179 (223)
                      + ++|||.+|||++|||||
T Consensus       167 ~-~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         167 T-DSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             S-CCGGGGCTTEEECSSCS
T ss_pred             C-CchHhcCCCEEECCCCC
Confidence            6 78999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=4.5e-50  Score=322.95  Aligned_cols=179  Identities=29%  Similarity=0.438  Sum_probs=163.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-----ccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAG-----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~-----~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~   75 (223)
                      ++||++.|++...++.+++|.|.+..     ....+.+|.|++|||||+|+||+.+|+++++|||+|++||+... .+..
T Consensus         9 ~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~-~~~~   87 (193)
T d1mx3a1           9 CHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS-DGVE   87 (193)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC-TTHH
T ss_pred             HHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccCccc-ccch
Confidence            47999999999999999999997542     12357899999999999999999999999999999999999754 3344


Q ss_pred             HhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        76 ~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ...++...+++++++++||+|++|+|++++|+++++++.|+.||+++++||+|||++||++||+++|++|++.+|++|||
T Consensus        88 ~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  167 (193)
T d1mx3a1          88 RALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH  167 (193)
T ss_dssp             HHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcC
Confidence            55677778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-CCCCccCCCCeEEccCCCC
Q 027408          156 NPQPAP-KDHPWRYMPNQAMTPHVSG  180 (223)
Q Consensus       156 ~~ep~~-~~~~l~~~~nv~~tPH~a~  180 (223)
                      ++||.+ .++||+.+|||++|||+|+
T Consensus       168 ~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         168 ESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             SSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             CCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            999987 5789999999999999985

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=7.3e-49  Score=317.45  Aligned_cols=176  Identities=25%  Similarity=0.428  Sum_probs=156.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|++...++.+++|.|.+.. ...+++|.|++|||||+|+||+.+|+++++|||+|++|||+.....   ....
T Consensus        11 ~~iL~l~R~~~~~~~~~~~g~w~~~~-~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~---~~~~   86 (199)
T d1dxya1          11 TDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD---HPDF   86 (199)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCHHHHT-CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC---CTTC
T ss_pred             HHHHHHHhCHHHHHHHHHhCCCCccc-CcccccccceeeeeeecccccccccccccccceeeeccCCccchhh---hcch
Confidence            47999999999999999999997543 2357899999999999999999999999999999999999753321   1223


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      . ..++++++++||+|++|+|+|++|+++++++.|+.||+++++||+|||++||++||+++|++|+|.||+||||++||.
T Consensus        87 ~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP~  165 (199)
T d1dxya1          87 D-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETE  165 (199)
T ss_dssp             E-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHH
T ss_pred             h-HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccCCCCc
Confidence            3 358999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C-------------CCCCccCCCCeEEccCCCCC
Q 027408          161 P-------------KDHPWRYMPNQAMTPHVSGT  181 (223)
Q Consensus       161 ~-------------~~~~l~~~~nv~~tPH~a~~  181 (223)
                      +             ..++|+.+|||++|||+|||
T Consensus       166 ~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         166 DLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             chhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            2             22457789999999999996

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=3.6e-48  Score=312.60  Aligned_cols=175  Identities=27%  Similarity=0.445  Sum_probs=155.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||+++|++...++.+++|+|.+..  ..+++|.|++|||||+|+||+.+|+++++|||+|++||+... ... ...+.
T Consensus        10 ~~~l~l~r~~~~~~~~~~~~~~~w~~--~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~-~~~-~~~~~   85 (197)
T d1j4aa1          10 IQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN-PEL-EKKGY   85 (197)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTBCCCTT--CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC-HHH-HHTTC
T ss_pred             HHHHHHHhCcHHHHHHHHhCCCCcCC--CcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccc-ccc-cccee
Confidence            47899999999999999999887543  347899999999999999999999999999999999998653 222 22233


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                       ...++++++++||+|++|+|+|++|+++++++.|+.||+++++||+|||++||++||+++|++|++.+|++|||++||.
T Consensus        86 -~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~Ep~  164 (197)
T d1j4aa1          86 -YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG  164 (197)
T ss_dssp             -BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTT
T ss_pred             -eeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccCCc
Confidence             4568999999999999999999999999999999999999999999999999999999999999999999999999964


Q ss_pred             C-------------CCCCccCCCCeEEccCCCC
Q 027408          161 P-------------KDHPWRYMPNQAMTPHVSG  180 (223)
Q Consensus       161 ~-------------~~~~l~~~~nv~~tPH~a~  180 (223)
                      .             .++||+.+|||++|||+|+
T Consensus       165 ~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         165 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             TTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             ccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            3             3356889999999999985

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-47  Score=305.19  Aligned_cols=174  Identities=28%  Similarity=0.451  Sum_probs=149.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      ++||++.|+++.+++.++++.|.+..  ..+++|.|++|||+|+|.||+.+|++++.|||+|++||+......    ...
T Consensus        11 ~~il~l~R~~~~~~~~~~~~~w~~~~--~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~   84 (188)
T d1sc6a1          11 GELLLLLRGVPEANAKAHRGVGNKLA--AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNA   84 (188)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTC
T ss_pred             HHHHHHHhChHHHHHHHHhCCCcccc--cccccccceEEEEeecccchhhhhhhcccccceEeeccccccchh----hhh
Confidence            47999999999999999999998653  346799999999999999999999999999999999998653221    123


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~  160 (223)
                      ....++++++++||+|++|+|++++|+++|+++.|+.||++++|||+|||++||++||+++|+++++.+|+||||++||.
T Consensus        85 ~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~~~EP~  164 (188)
T d1sc6a1          85 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPA  164 (188)
T ss_dssp             EECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC------
T ss_pred             hhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecCCCCCC
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C----CCCCccCCCCeEEccCCCC
Q 027408          161 P----KDHPWRYMPNQAMTPHVSG  180 (223)
Q Consensus       161 ~----~~~~l~~~~nv~~tPH~a~  180 (223)
                      .    ..+||+.+|||++|||+||
T Consensus       165 ~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         165 TNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             ---CTTTGGGTTCTTEEEECCCSC
T ss_pred             CcCCccchhHhcCCCEEEcCCcCc
Confidence            4    3458999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=3.7e-47  Score=303.00  Aligned_cols=171  Identities=22%  Similarity=0.350  Sum_probs=155.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC
Q 027408            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (223)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (223)
                      +|||++.|++..+++.+++|+|.+..   ...+|.|++|||||+|.||+.+|+.+++||++|++|||++...      ..
T Consensus        10 ~liL~~~R~i~~~~~~~~~~~w~~~~---~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~------~~   80 (181)
T d1qp8a1          10 ALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG------PW   80 (181)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS------SS
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCCCC---CCCcccCceEEEeccccccccceeeeecccccccccccccccc------ce
Confidence            48999999999999999999997643   2347999999999999999999999999999999999976321      12


Q ss_pred             eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCC-C
Q 027408           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ-P  159 (223)
Q Consensus        81 ~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~e-p  159 (223)
                      ....++++++++||+|++|+|+|++|+++|+++.|+.||++++|||+|||++||+++|+++|+++++.+|++|||++| |
T Consensus        81 ~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~~e~p  160 (181)
T d1qp8a1          81 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRND  160 (181)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTC
T ss_pred             eeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCCCCCC
Confidence            345689999999999999999999999999999999999999999999999999999999999999999999999765 5


Q ss_pred             CCCCCCccCCCCeEEccCCCC
Q 027408          160 APKDHPWRYMPNQAMTPHVSG  180 (223)
Q Consensus       160 ~~~~~~l~~~~nv~~tPH~a~  180 (223)
                      .+.++||+.+|||++|||+||
T Consensus       161 ~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         161 FAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             CGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCChHHcCCCEEeccccCc
Confidence            678889999999999999997

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5e-17  Score=124.92  Aligned_cols=108  Identities=17%  Similarity=0.231  Sum_probs=90.6

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      +..|.||+++|+|+|.||+.+|++++++|++|+++++.+...-.+...|+.. .+++++++.+|+++.++.    ++++|
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v-~~~~~a~~~adivvtaTG----n~~vI   93 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEV-TTMDEACQEGNIFVTTTG----CIDII   93 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSS----CSCSB
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEe-eehhhhhhhccEEEecCC----Cccch
Confidence            3569999999999999999999999999999999999763333333345554 589999999999988876    67889


Q ss_pred             cHHHHhcCCCCcEEEEcC-CCCccCHHHHHHHHH
Q 027408          111 DKDRIAKMKKGVLIVNNA-RGAIMDTQAVVDACS  143 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~s-rg~~vd~~al~~~L~  143 (223)
                      +.+.|+.||+|+++.|++ +..-+|.++|.+...
T Consensus        94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~  127 (163)
T d1li4a1          94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAV  127 (163)
T ss_dssp             CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCS
T ss_pred             hHHHHHhccCCeEEEEeccccceecHHHHhhccc
Confidence            999999999999999987 566699999877543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.66  E-value=8.4e-17  Score=123.96  Aligned_cols=115  Identities=18%  Similarity=0.267  Sum_probs=100.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~  114 (223)
                      ++|||||+|.||..+|+.|...|++|++||+++...+.+.+.+.....+.+|+++++|+|++|+|..+....++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            589999999999999999999999999999987555666667788888999999999999999998888777652  357


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~  151 (223)
                      +..++++.++||++....-+...+.+.+++..+....
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd  117 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLD  117 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceec
Confidence            8889999999999999998889999999998887433

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.63  E-value=9.4e-16  Score=118.11  Aligned_cols=147  Identities=16%  Similarity=0.108  Sum_probs=97.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC-eecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      +||||||+|.||+++|+.|+..|++|.+|||++...+.+.+.+. ....+..+.+++||+|++++|.. .+..++ ++..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhh-hhhh
Confidence            68999999999999999999999999999998654555556664 22334456789999999999933 444444 6778


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC-CCCCCCCCCccCCCCeEEccCCCCCcHHHHH
Q 027408          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN-PQPAPKDHPWRYMPNQAMTPHVSGTTIDAQL  187 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~-~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~  187 (223)
                      ..+++++++++++......... ...+...-+..-.+...+ ..|......|+....+++||+-++. .+..+
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~-~~~~~  149 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD-PEQLA  149 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC-HHHHH
T ss_pred             hhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC-HHHHH
Confidence            8899999999998665333332 333333322222222111 1122334557777789999976643 44433

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.58  E-value=2.3e-14  Score=110.48  Aligned_cols=148  Identities=11%  Similarity=0.016  Sum_probs=105.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCC--eecCCHHhhc-ccCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDTML-PKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~e~l-~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      |+|+|||+|.||.++|+.|+..|.  +|++||+++...+.+.+.+.  ....+.++.. ..+|+|++|+|.. .+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~-~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch-hhhhhh-
Confidence            579999999999999999988875  79999998755566666665  2334444433 5799999999932 233333 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC-CCCCCCCCccCCCCeEEccCCCCCcHHHHH
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP-QPAPKDHPWRYMPNQAMTPHVSGTTIDAQL  187 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~-ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~  187 (223)
                      ++....+++++++++++.....-.+++.+.+...-+.+--+...+. .|......|+...++++|||-.. +.+..+
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~-~~~~~~  155 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT-DKKRLK  155 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS-CHHHHH
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCC-CHHHHH
Confidence            5677889999999999997776667777777765455444443322 24445567888888999998653 455444

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.57  E-value=2.3e-15  Score=115.92  Aligned_cols=115  Identities=17%  Similarity=0.232  Sum_probs=99.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc--HHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~--~~~  114 (223)
                      ++|||||+|.||..+|++|...|++|.+||+++...+.....+.....++.+++..+|+|++|+|..+....++.  ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            589999999999999999999999999999987555566667777778999999999999999998777665542  346


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~  151 (223)
                      .+.++++.++||++....-+...+.+.+++..+.+..
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~d  118 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLD  118 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEe
Confidence            7789999999999999999999999999998887443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.55  E-value=1.1e-14  Score=111.31  Aligned_cols=103  Identities=17%  Similarity=0.229  Sum_probs=86.7

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .-|.||++.|+|||.+|+.+|++++++|++|++++..|...-.+.-.|++. .+++++++.+|+++.++.    ..++|+
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTG----n~~vI~   93 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTG----NVDVIK   93 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCS----SSSSBC
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCC----CCcccc
Confidence            358999999999999999999999999999999999774333344456665 589999999999999987    456899


Q ss_pred             HHHHhcCCCCcEEEEcCCCCc-cCHHHHH
Q 027408          112 KDRIAKMKKGVLIVNNARGAI-MDTQAVV  139 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~-vd~~al~  139 (223)
                      .+.|..||+|+++.|++.-.. +|.++|.
T Consensus        94 ~~h~~~MKdgaIl~N~GHfd~EIdv~~L~  122 (163)
T d1v8ba1          94 LEHLLKMKNNAVVGNIGHFDDEIQVNELF  122 (163)
T ss_dssp             HHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred             HHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence            999999999999999998765 5665554

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.46  E-value=7.8e-14  Score=108.51  Aligned_cols=115  Identities=11%  Similarity=0.107  Sum_probs=93.7

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC--------CeecCCHHhhcccCCEEEEcCCCChhhh
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--------AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g--------~~~~~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .++|||||+|.||..+|++|...|++|.+|||++...+...+.+        .....++.+.+..+|.+++++|..+.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            35799999999999999999999999999999874444333322        2223455677889999999999888776


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEE
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~  151 (223)
                      .+. ...+..+++|.++||++....-+...+.+.+.+..+....
T Consensus        82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ld  124 (176)
T d2pgda2          82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVG  124 (176)
T ss_dssp             HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceec
Confidence            654 6788999999999999999999999999999998887443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.38  E-value=1.4e-12  Score=99.03  Aligned_cols=101  Identities=12%  Similarity=0.254  Sum_probs=83.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~  115 (223)
                      ++|||||+|+||+++++.|...|.++++|+|+... .+..+++++....+.++++++||+|++|++  |+.    -.+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~----~~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL----FETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG----HHHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh----HHHHh
Confidence            58999999999999999999999999999997533 334566788888899999999999999997  321    26778


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 027408          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (223)
Q Consensus       116 ~~mk~ga~ivn~srg~~vd~~al~~~L~~g  145 (223)
                      +.++++.++|+++.|  +..+.|.+.|..+
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhccc
Confidence            889999999999887  4667777777543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.34  E-value=8.8e-13  Score=99.97  Aligned_cols=106  Identities=12%  Similarity=0.138  Sum_probs=79.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (223)
                      +||||||+|.||+.+|+.|...|++|.++++.+.........+.....+++|++++||+|++|+|......-+  .+...
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~--~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAA--RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHH--HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHH--Hhhcc
Confidence            5899999999999999999999999999998764443333333434567899999999999999954433221  23333


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       117 ~mk~ga~ivn~srg~~vd~~al~~~L~~g~  146 (223)
                      .  .+.++|+++.........+.+.+++.+
T Consensus        79 ~--~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 H--VRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             T--CCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             c--CCceeeccCcCCHHHHHHHHHHHhccC
Confidence            3  367899999888877788888776654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.25  E-value=6.3e-12  Score=95.58  Aligned_cols=115  Identities=13%  Similarity=0.149  Sum_probs=88.0

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHh
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (223)
                      ||||||+|.||..+|++|...|..+ +|+++. +..+..+..+...  +..+.+.++|++++++|..++.... ....++
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~v~~~-~~~l~~   77 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEA--VPLERVAEARVIFTCLPTTREVYEV-AEALYP   77 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEE--CCGGGGGGCSEEEECCSSHHHHHHH-HHHHTT
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcc--cccccccceeEEEecccchhhhhhh-hccccc
Confidence            6999999999999999999888766 566654 2223334444432  3346667899999999977766544 467889


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCC
Q 027408          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (223)
Q Consensus       117 ~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~  156 (223)
                      .++++.++||++....-....+.+.+++..+......|+.
T Consensus        78 ~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsG  117 (156)
T d2cvza2          78 YLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG  117 (156)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEES
T ss_pred             cccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccC
Confidence            9999999999999999999999999999888844433443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.21  E-value=1.8e-11  Score=94.80  Aligned_cols=120  Identities=15%  Similarity=0.138  Sum_probs=92.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC--------eecCCHH---hhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA--------KFEEDLD---TMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~--------~~~~~l~---e~l~~aDvVv~~~p~~~~  105 (223)
                      ++|||||+|.||..+|+.|...|++|.+|||++...+...+.+.        ....+.+   ..+..++.++.+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            67999999999999999999999999999997643333322221        1223333   345678899999987666


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~  157 (223)
                      ....+ ......++++.+++|++....-+...+.+.|.+..+......|+..
T Consensus        82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~  132 (178)
T d1pgja2          82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGG  132 (178)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESH
T ss_pred             hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCC
Confidence            65555 5677889999999999999999999999999998888665555554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.18  E-value=7.9e-11  Score=90.70  Aligned_cols=108  Identities=16%  Similarity=0.191  Sum_probs=79.2

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC---------------CeecCCHHhhcccCCEEEEcC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG---------------AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g---------------~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .|||+|||.|.||..+|..|...|++|.+|+|++...+.....+               ....++++|.++++|+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            47999999999999999999999999999999753333333322               122367899999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~  146 (223)
                      |... +.. +-++....++++++|+ ...|.......+.+.+....
T Consensus        81 ~~~~-~~~-~~~~i~~~l~~~~~iv-~~~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          81 PAIH-HAS-IAANIASYISEGQLII-LNPGATGGALEFRKILRENG  123 (184)
T ss_dssp             CGGG-HHH-HHHHHGGGCCTTCEEE-ESSCCSSHHHHHHHHHHHTT
T ss_pred             chhH-HHH-HHHHhhhccCCCCEEE-EeCCCCccHHHHHHHHHHhc
Confidence            9332 233 3366778889999877 45555555666667776654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.11  E-value=1.6e-10  Score=87.06  Aligned_cols=85  Identities=16%  Similarity=0.244  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        33 ~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      ...-++|+||| +|.||+.+|+.|+..|++|.+||++..             ...++.+..+|++++++|...  ...+.
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~-------------~~~~~~~~~~~~v~~~~~~~~--~~~v~   70 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILANADVVIVSVPINL--TLETI   70 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHTTCSEEEECSCGGG--HHHHH
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc-------------cccchhhhhccccccccchhh--heeee
Confidence            45667999999 999999999999999999999998652             134566788999999999433  23344


Q ss_pred             HHHHhcCCCCcEEEEcCCCCc
Q 027408          112 KDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~  132 (223)
                      .+....++++++++|++.-+.
T Consensus        71 ~~~~~~~~~~~iiiD~~Svk~   91 (152)
T d2pv7a2          71 ERLKPYLTENMLLADLTSVKR   91 (152)
T ss_dssp             HHHGGGCCTTSEEEECCSCCH
T ss_pred             ecccccccCCceEEEecccCH
Confidence            788899999999999987543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.07  E-value=1e-10  Score=88.25  Aligned_cols=98  Identities=18%  Similarity=0.266  Sum_probs=72.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC-CeEEEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      ++|||||+|+||+++++.|...| .+|.++||++... ...+++++...++.++ +.++|+|+++++  |..  +  .+.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk--P~~--~--~~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK--PQD--M--EAA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC--HHH--H--HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC--HHH--H--HHh
Confidence            58999999999999999886555 8999999986333 3445678877766655 578999999998  432  1  445


Q ss_pred             HhcCC-CCcEEEEcCCCCccCHHHHHHHHH
Q 027408          115 IAKMK-KGVLIVNNARGAIMDTQAVVDACS  143 (223)
Q Consensus       115 ~~~mk-~ga~ivn~srg~~vd~~al~~~L~  143 (223)
                      ++.++ .+.++|++..|-  ..+.+.+.|.
T Consensus        74 ~~~l~~~~~~viS~~ag~--~~~~l~~~l~  101 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGL--SVGTLSRYLG  101 (152)
T ss_dssp             HTTCCCTTCEEEECCTTC--CHHHHHHHTT
T ss_pred             HHHHhhcccEEeecccCC--CHHHHHHHhC
Confidence            55554 478899888876  4566777764

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=3e-11  Score=91.09  Aligned_cols=89  Identities=16%  Similarity=0.063  Sum_probs=60.6

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM  118 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~m  118 (223)
                      |||||+|+||+.+++.|+..+..+.+|+|++...+...+.+.....+++++++++|+|++|+|...     + .+.++.+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~-----i-~~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-----I-KTVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-----H-HHHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchh-----h-hHHHhhh
Confidence            799999999999999997744445689998643333333333345688899999999999999432     2 4556666


Q ss_pred             C-CCcEEEEcCCCCcc
Q 027408          119 K-KGVLIVNNARGAIM  133 (223)
Q Consensus       119 k-~ga~ivn~srg~~v  133 (223)
                      + ++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence            4 78999999977643

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.96  E-value=9.1e-10  Score=83.85  Aligned_cols=96  Identities=25%  Similarity=0.368  Sum_probs=72.2

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC-CChhHHHhhCCee--cCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK-MDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~-~~~~~~~~~g~~~--~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.+++|.|||.|.||+.+++.|...|. ++.+++|+. +..+.+.+++...  ++++.+.+.++|+|+.|++.   ...
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss---~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA---PHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS---SSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC---CCc
Confidence            5899999999999999999999999998 599999985 3445666667543  45777888899999999872   345


Q ss_pred             cccHHHHhcC------CCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKM------KKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~m------k~ga~ivn~srg~  131 (223)
                      +++++.++..      ++..++||.+...
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavPr  126 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANPR  126 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence            6777666432      2334777776543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.94  E-value=3.8e-09  Score=81.68  Aligned_cols=97  Identities=20%  Similarity=0.232  Sum_probs=75.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecC----------------------------
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE----------------------------   84 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~----------------------------   84 (223)
                      .+.--+|.|||.|..|..-++.++.+|.+|.++|.+....+..++++..+.+                            
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            3556799999999999999999999999999999987666666665533221                            


Q ss_pred             -CHHhhcccCCEEEEcCC-CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           85 -DLDTMLPKCDIVVVNTP-LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        85 -~l~e~l~~aDvVv~~~p-~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       .+.+.++++|+|+.++- .......++.++.++.||||++|||++-
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence             13345788999987642 1233456899999999999999999973

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.7e-09  Score=84.70  Aligned_cols=116  Identities=14%  Similarity=0.092  Sum_probs=86.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------h------------------hCCeecCCHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E------------------TGAKFEEDLD   87 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~------------------~g~~~~~~l~   87 (223)
                      ++|+|||.|.||+.+|..+...|++|+.||+++...+.+.           +                  ..+....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            6999999999999999999999999999999763221110           0                  1233456888


Q ss_pred             hhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        88 e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      +.+++||+|+-++|.+.+.+.-+-.+.-+.++++++|...+.+-  ....|.+.+. ..-+..++--|
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~-~p~r~ig~Hff  149 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATT-RQDRFAGLHFF  149 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSS-CGGGEEEEEEC
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhhhcc-CHhHEEeeccc
Confidence            99999999999999888888877788888899999987665543  4555666543 34454555533

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.93  E-value=1.9e-09  Score=82.26  Aligned_cols=97  Identities=12%  Similarity=0.172  Sum_probs=75.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh---CCee----cCCHHhhcccCCEEEEcCC-CCh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---GAKF----EEDLDTMLPKCDIVVVNTP-LTE  104 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~---g~~~----~~~l~e~l~~aDvVv~~~p-~~~  104 (223)
                      .+.-.+|.|||.|..|..-++.++.+|.+|.++|.+....+..+..   .++.    ...+++.+++||+||.++- ...
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            3567899999999999999999999999999999875333322221   1211    1356788899999998753 344


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ....+|.++.++.||||++|||++-
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             ccCeeecHHHHhhcCCCcEEEEeec
Confidence            5677899999999999999999974

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.92  E-value=7.6e-10  Score=84.70  Aligned_cols=96  Identities=23%  Similarity=0.320  Sum_probs=75.8

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhccc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~  111 (223)
                      -|++|+|+|||||.-|++-|..|+..|.+|++--|.. .+.+.+++.|++.. +++|+.+.+|+|.+.+|+.-+ ..+..
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~PD~~q-~~vy~   90 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQ-GRLYK   90 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHH-HHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecchHHH-HHHHH
Confidence            3789999999999999999999999999988766644 33456777788765 899999999999999993222 23344


Q ss_pred             HHHHhcCCCCcEEEEcCCCC
Q 027408          112 KDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++....||+|+.+. .+.|-
T Consensus        91 ~~I~p~lk~g~~L~-FaHGf  109 (182)
T d1np3a2          91 EEIEPNLKKGATLA-FAHGF  109 (182)
T ss_dssp             HHTGGGCCTTCEEE-ESCCH
T ss_pred             HhhhhhcCCCcEEE-Eeccc
Confidence            57889999999875 44443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.87  E-value=5e-09  Score=82.61  Aligned_cols=108  Identities=21%  Similarity=0.255  Sum_probs=83.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcc-cCCEEEEcCCCChhhhhccc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~-~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .|.|+||+|.|+|++|+.+|+.|...|++|+++|.+..........+.... +.++++. +||+++-|.-     .+.|+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~-----~~~I~   97 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAM-----GGVIT   97 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSC-----SCCBC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeecccc-----ccccc
Confidence            599999999999999999999999999999999987544444555676665 6777775 7999987764     57789


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       112 ~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      ++..+.++- .+|+..+.+++.++ +..+.|.+..|.
T Consensus        98 ~~~a~~i~a-k~i~e~AN~p~~~~-~~~~~L~~rgI~  132 (201)
T d1c1da1          98 TEVARTLDC-SVVAGAANNVIADE-AASDILHARGIL  132 (201)
T ss_dssp             HHHHHHCCC-SEECCSCTTCBCSH-HHHHHHHHTTCE
T ss_pred             HHHHhhhhh-heeeccCCCCcchh-hHHHHhcccceE
Confidence            999998863 45566666666655 445677777665

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.80  E-value=1e-08  Score=80.89  Aligned_cols=91  Identities=15%  Similarity=0.134  Sum_probs=71.1

Q ss_pred             CCC-CEEEEEcccHHHHHHHHHHcc------CCCeEE-EEcCCCCChhHHHhhCCee----cCCHHhhcccCCEEEEcCC
Q 027408           34 LEG-KTVGTVGCGRIGKLLLQRLKP------FNCNLL-YHDRVKMDPQLEKETGAKF----EEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        34 l~g-~~igIiG~G~iG~~iA~~l~~------~G~~V~-~~d~~~~~~~~~~~~g~~~----~~~l~e~l~~aDvVv~~~p  101 (223)
                      +.| |+|+|||||.-|++-|..|+.      .|.+|+ +..+...+.+.++..|++.    +.+.+|++++||+|.+.+|
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            678 899999999999999999998      456665 4444446777788888752    3378899999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEE
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVN  126 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn  126 (223)
                      +  +...-+-++....||+|+.+.-
T Consensus       121 D--e~Q~~vy~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         121 D--SAQADNYEKVFSHMKPNSILGL  143 (226)
T ss_dssp             H--HHHHHHHHHHHHHSCTTCEEEE
T ss_pred             h--HHHHHHHHHHHHhcCCCceeee
Confidence            4  3333344678899999998763

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.76  E-value=4e-09  Score=82.41  Aligned_cols=95  Identities=19%  Similarity=0.246  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------hCCeecCCHHhhcccCCEEEEc
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TGAKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g~~~~~~l~e~l~~aDvVv~~   99 (223)
                      +.-++|+|||.|.+|.++|..|...|.+|..|+|++...+....              .++....+++++++++|+|+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            34468999999999999999999999999999986421111111              1234457899999999999999


Q ss_pred             CCCChhhhhcccHHHH-----hcCCCCcEEEEcCCC
Q 027408          100 TPLTEKTRGMFDKDRI-----AKMKKGVLIVNNARG  130 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~-----~~mk~ga~ivn~srg  130 (223)
                      +|. ...+.++ ++.-     ...+++..+++++.|
T Consensus        85 vPs-~~~~~~~-~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          85 IPT-QFLRGFF-EKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             SCH-HHHHHHH-HHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             CcH-HHHHHHH-HHHHhhhhhhhccCCcEEEEEECC
Confidence            992 1122221 1111     123467789999887

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.70  E-value=7.9e-09  Score=80.40  Aligned_cols=115  Identities=11%  Similarity=0.080  Sum_probs=82.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------hC-------------CeecCCHHhhccc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK   92 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~e~l~~   92 (223)
                      ++|+|||.|.||+.+|..+...|++|.+||+++...+....           .+             +....+. +.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence            57999999999999999999999999999997532221100           00             1222233 34679


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      ||+|+-++|.+.+.+.-+..+.-+.++++++|.+.+.+-.  ...|.+.+. ..-+..++-.|
T Consensus        84 adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~--i~~la~~~~-~p~r~~g~Hf~  143 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTIS--ISLLAKALK-RPENFVGMHFF  143 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC--HHHHGGGCS-CGGGEEEEECC
T ss_pred             cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccccc--HHHHHHhcc-CchheEeeccc
Confidence            9999999999888888888888899999999977766543  455666554 34454555543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=1.3e-08  Score=76.66  Aligned_cols=92  Identities=16%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCC-------eecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-------KFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-------~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      |||+|||.|.||..+|..|...|++|.+++|.....+.....+.       ....+..+.+..+|+|+++++. ..+...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence            68999999999999999999999999999997643332111111       1123445667889999999994 333333


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg  130 (223)
                       .+.....+++++.|+.+..|
T Consensus        80 -~~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 -VKSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             -HHHHHTTSCTTSCEEEECSS
T ss_pred             -HHhhccccCcccEEeeccCc
Confidence             25556677889989888766

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.69  E-value=1.7e-08  Score=77.96  Aligned_cols=92  Identities=17%  Similarity=0.206  Sum_probs=64.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----------------CCeecCCHHhhcccCCEEEEcC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------GAKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------g~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      |+|+|||.|.+|.++|..|...|.+|..|.|... .+..+..                .+...++++++++++|+|++++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~-~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFD-TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGG-HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEeccc-HHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            6899999999999999999999999999987432 1111110                0123468889999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q 027408          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~  132 (223)
                      |. ...+.+ -++....+++ ..++.++.|..
T Consensus        80 ps-~~~~~~-~~~l~~~l~~-~~ii~~tkg~~  108 (180)
T d1txga2          80 ST-DGVLPV-MSRILPYLKD-QYIVLISKGLI  108 (180)
T ss_dssp             CG-GGHHHH-HHHHTTTCCS-CEEEECCCSEE
T ss_pred             ch-hhhHHH-HHhhcccccc-ceecccccCcc
Confidence            93 222222 3455556655 56666777754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.68  E-value=3.8e-08  Score=77.20  Aligned_cols=104  Identities=12%  Similarity=0.047  Sum_probs=73.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH--------------------HhhCCeecCCHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE--------------------KETGAKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~--------------------~~~g~~~~~~l~e~l~~aDvV   96 (223)
                      |+|+|||+|.+|..+|..++..|++|++||.+....+..                    ........+++++.+++||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            689999999999999999999999999999864211110                    011224457889999999999


Q ss_pred             EEcCCCChh----------hhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH
Q 027408           97 VVNTPLTEK----------TRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA  141 (223)
Q Consensus        97 v~~~p~~~~----------t~~~i~--~~~~~~mk~ga~ivn~srg~~vd~~al~~~  141 (223)
                      ++|+|. |.          ...++.  ....+..+++.++|..|.-.+-..+.+...
T Consensus        81 ~i~VpT-P~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~  136 (202)
T d1mv8a2          81 FICVGT-PSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIP  136 (202)
T ss_dssp             EECCCC-CBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHH
T ss_pred             EEecCc-cccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhh
Confidence            999983 21          111111  234456678899999888777666665554

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.67  E-value=1.4e-08  Score=72.51  Aligned_cols=91  Identities=15%  Similarity=0.163  Sum_probs=66.8

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH---HhhCCeec--CCHHhhcccCCEEEEcCCCChhh
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE---KETGAKFE--EDLDTMLPKCDIVVVNTPLTEKT  106 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~---~~~g~~~~--~~l~e~l~~aDvVv~~~p~~~~t  106 (223)
                      .+|+|++|+|||.|.+|..-|+.|..+|++|+++++... ++..   ...++...  .--++.+..+++|+.++.     
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~-~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~-----   81 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI-PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD-----   81 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC-HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS-----
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC-hHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCC-----
Confidence            479999999999999999999999999999999998653 2222   12222211  112345678899888775     


Q ss_pred             hhcccHHHHhcCCCCcEEEEcC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ...++.+..+.+|+..++||++
T Consensus        82 d~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          82 DDTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEET
T ss_pred             CHHHHHHHHHHHHHcCCEEEeC
Confidence            3345677778888888999974

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=1.4e-07  Score=64.89  Aligned_cols=68  Identities=22%  Similarity=0.249  Sum_probs=48.3

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hhCCe-ec-CCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAK-FE-EDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~-~~-~~l~e~l~~aDvVv~~~  100 (223)
                      +++||+|+|+|+|..|.++|+.|...|++|+++|.+........ ..+.. .. ..-++.+.+.|+|+++.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SP   72 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASP   72 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECT
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECC
Confidence            57999999999999999999999999999999998653222111 11221 11 12245567889887753

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.45  E-value=2.4e-06  Score=66.02  Aligned_cols=134  Identities=13%  Similarity=0.165  Sum_probs=85.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH----------------h--hCCeecCCHHhhcccCCEEEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK----------------E--TGAKFEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~----------------~--~g~~~~~~l~e~l~~aDvVv~   98 (223)
                      |+|+|||+|.+|..+|..++ .|++|++||.++...+...                .  .......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            68999999999999998775 6999999998753221111                0  112223455666788999999


Q ss_pred             cCCCChhhhh-ccc-------HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCc---c
Q 027408           99 NTPLTEKTRG-MFD-------KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW---R  167 (223)
Q Consensus        99 ~~p~~~~t~~-~i~-------~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l---~  167 (223)
                      ++|....... ..+       .+.+...+++.+++.-+.-.+-..+.+.+.+.+.++.      +.+|-..+.+.+   .
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~  153 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL  153 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence            9995433221 111       1223334677888888887777777787777666543      456766555544   4


Q ss_pred             CCCCeEEccC
Q 027408          168 YMPNQAMTPH  177 (223)
Q Consensus       168 ~~~nv~~tPH  177 (223)
                      ..+++++--+
T Consensus       154 ~p~riv~G~~  163 (196)
T d1dlja2         154 YPSRIIVSCE  163 (196)
T ss_dssp             SCSCEEEECC
T ss_pred             CCCEEEEeCC
Confidence            4566655443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=1.4e-07  Score=71.54  Aligned_cols=92  Identities=24%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec------CC-HHhhcccCCEEEEcCCCChhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------ED-LDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~-l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .|.+|.|+|.|.+|...++.++.+|++|+++++++...+.++++|...+      .+ .+......|+++.++.....  
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~--  104 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD--  104 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT--
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc--
Confidence            6899999999999999999999999999999998888888888886421      11 22334567999888763221  


Q ss_pred             hcccHHHHhcCCCCcEEEEcCC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       ......++.++++..++.++-
T Consensus       105 -~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2         105 -IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             -CCTTTGGGGEEEEEEEEECCC
T ss_pred             -chHHHHHHHhhccceEEEecc
Confidence             112456788899888988864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.43  E-value=1.8e-07  Score=68.16  Aligned_cols=71  Identities=17%  Similarity=0.258  Sum_probs=52.8

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-------cCCHHhh-cccCCEEEEcCCCChhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTM-LPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~e~-l~~aDvVv~~~p~~~~t~  107 (223)
                      |++.|+|+|++|+.+|+.|...|.+|+++|.++...+.....+...       .+.++++ +.++|.|+++++.+..+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS   79 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence            5789999999999999999999999999998764333333444321       1234444 678999999999665543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=3.2e-07  Score=69.22  Aligned_cols=67  Identities=19%  Similarity=0.324  Sum_probs=52.7

Q ss_pred             CEEEEEcccHHHHH-HHHHHccC-CCeE-EEEcCCCCCh-hHHHhhCCeecCCHHhhcccCCEEEEcCCCC
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNL-LYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~~-G~~V-~~~d~~~~~~-~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      .+|||||+|.+|+. .+..++.. ++++ .++|++.... +..+.+++..++++++++++.|+|++++|..
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~   72 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTA   72 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccch
Confidence            47999999999986 56667654 6775 4788876433 4556778888889999999999999999943

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.36  E-value=9e-07  Score=70.69  Aligned_cols=109  Identities=22%  Similarity=0.262  Sum_probs=81.8

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhhCCeecCCHHhhc-ccCCEEEEcCCCChhhhhc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~e~l-~~aDvVv~~~p~~~~t~~~  109 (223)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++.|.+.... ......+.... +.++++ ..||+++-|.-     .+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~-----~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL-----GAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC-----SCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEeccccc-----ccc
Confidence            36999999999999999999999999999999999865222 23334566655 566666 46999998875     677


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      |+++....++- .+|+-.+...+.+.++. +.|.+..|.
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            88888888863 46666666888776654 555555554

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.31  E-value=9.9e-07  Score=67.02  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=60.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      .+|||||+|.||+.+++.++.. ++++. ++|++...   ....+.....+.+++..+.|+|++|+|.....     +-.
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~---~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-----~~a   75 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL---DTKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQ   75 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC---SSSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHH
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc---ccccccccchhhhhhccccceEEEeCCCcccH-----HHH
Confidence            4799999999999999999875 67754 67776532   22334555667888889999999999944322     344


Q ss_pred             HhcCCCCcEEEEcC
Q 027408          115 IAKMKKGVLIVNNA  128 (223)
Q Consensus       115 ~~~mk~ga~ivn~s  128 (223)
                      .+.++.|..+|.+.
T Consensus        76 ~~aL~aG~~vv~~~   89 (170)
T d1f06a1          76 APKFAQFACTVDTY   89 (170)
T ss_dssp             HHHHTTTSEEECCC
T ss_pred             HHHHHCCCcEEEec
Confidence            55567787766543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.29  E-value=2.6e-07  Score=69.67  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=60.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhhCCe--------ecCCHHhhcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAK--------FEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~--------~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ++|+|.|||+|.||+.+|+.|...|.+|+++||+....+ .+..++..        ....+++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            479999999999999999999999999999999863322 22222211        112445667889999988884322


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .     .......+.+..+++.+
T Consensus        81 ~-----~~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          81 A-----TVIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             H-----HHHHHHHHHTCEEECSS
T ss_pred             h-----HHHHHHHhhccceeecc
Confidence            1     12223334556677765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.7e-06  Score=65.42  Aligned_cols=90  Identities=22%  Similarity=0.200  Sum_probs=69.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhc--------ccCCEEEEcC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML--------PKCDIVVVNT  100 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l--------~~aDvVv~~~  100 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++...+.++++|...+     .+..+..        ..+|+|+-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            57899999999999999999999999 69999998877778888886432     2333332        2579999998


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .. +.    .-+..++.++++..++.++-
T Consensus       106 G~-~~----~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2         106 GA-EA----SIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             CC-HH----HHHHHHHHSCTTCEEEECSC
T ss_pred             CC-ch----hHHHHHHHhcCCCEEEEEec
Confidence            72 22    23677889999998888864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=2.3e-06  Score=64.89  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=53.0

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhh---C-CeecCCHHhh-cccCCEEEEcCCCCh
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET---G-AKFEEDLDTM-LPKCDIVVVNTPLTE  104 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~---g-~~~~~~l~e~-l~~aDvVv~~~p~~~  104 (223)
                      +..+.||+|.|+|.|..+++++..|...|.+|.+++|+.... +..+.+   + +... +.++. ..++|+||.|+|...
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~-~~~~~~~~~~dliIN~Tp~G~   91 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQAL-SMDELEGHEFDLIINATSSGI   91 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEEC-CSGGGTTCCCSEEEECCSCGG
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccc-ccccccccccceeecccccCc
Confidence            346899999999999999999999999999999999986322 222222   1 2223 33333 457999999999543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=2.3e-06  Score=64.79  Aligned_cols=81  Identities=17%  Similarity=0.334  Sum_probs=65.8

Q ss_pred             cccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.++.||+|.|||-+. +|+.+|..|...|+.|+.++...              .++.+.+++||+|+.++.    -.+
T Consensus        31 y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G----~p~   92 (166)
T d1b0aa1          31 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVG----KPG   92 (166)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSC----CTT
T ss_pred             cCcccccceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhcc----Ccc
Confidence            35679999999999877 89999999999999999887643              367778899999999987    234


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      ++..+   .+|+|+++||++--.
T Consensus        93 ~i~~~---~vk~g~vvIDvGi~~  112 (166)
T d1b0aa1          93 FIPGD---WIKEGAIVIDVGINR  112 (166)
T ss_dssp             CBCTT---TSCTTCEEEECCCEE
T ss_pred             ccccc---ccCCCcEEEecCcee
Confidence            56544   568999999997543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.5e-06  Score=64.09  Aligned_cols=84  Identities=21%  Similarity=0.264  Sum_probs=66.2

Q ss_pred             cccCCCCCEEEEEcccH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           30 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .+.+++||+|.|||-+. +|+.+|..|...|+.|..++...              .++.+.++++|+|+.+++.    .+
T Consensus        33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~----~~   94 (170)
T d1a4ia1          33 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQ----PE   94 (170)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TT
T ss_pred             hCcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhcccc----cc
Confidence            45689999999999865 89999999999999999998743              2566778899999999882    34


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCccC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAIMD  134 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~vd  134 (223)
                      ++..   ..+|+|+++||++-..+.|
T Consensus        95 ~i~~---~~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          95 MVKG---EWIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             CBCG---GGSCTTCEEEECCCBC---
T ss_pred             cccc---ccccCCCeEeccCcccccc
Confidence            4543   3579999999998655443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=1.6e-06  Score=65.50  Aligned_cols=90  Identities=18%  Similarity=0.256  Sum_probs=68.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec---CCHH---hhcccCCEEEEcCCCChhhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDLD---TMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~l~---e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+++....+.++++|...+   .+.+   ...+..|+++.++.....   
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~---  106 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  106 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchh---
Confidence            5899999999999999999999999999999987766677788886422   1222   223468999998873221   


Q ss_pred             cccHHHHhcCCCCcEEEEcCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        -...++.++++..++.++.
T Consensus       107 --~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         107 --LDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             --HHHHHTTEEEEEEEEECCC
T ss_pred             --HHHHHHHHhcCCEEEEecc
Confidence              2566788888888888764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.15  E-value=4.6e-06  Score=60.41  Aligned_cols=87  Identities=16%  Similarity=0.112  Sum_probs=59.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhhCCeec----CCHH---hh-cccCCEEEEcCCCChhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE----EDLD---TM-LPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~----~~l~---e~-l~~aDvVv~~~p~~~~t~  107 (223)
                      ++|.|+|+|.+|+.+|+.|...|.+|++.|.++...+.. .+.+...+    .+.+   ++ ++++|.++.+++..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            689999999999999999999999999999876332222 33354321    2222   22 5789999888875433  


Q ss_pred             hcccHHHHhcCCCCcEEE
Q 027408          108 GMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~iv  125 (223)
                      +++-....+.+.+..+++
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            334445556666665554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.15  E-value=2.2e-06  Score=64.52  Aligned_cols=90  Identities=19%  Similarity=0.234  Sum_probs=67.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-------CCHHhh---c-----ccCCEEEEc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-------EDLDTM---L-----PKCDIVVVN   99 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-------~~l~e~---l-----~~aDvVv~~   99 (223)
                      .|.+|.|+|.|.||...++.++.+|++|+++++++...+.++++|....       .+.++.   +     ..+|+|+-+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~  105 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  105 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence            5789999999999999999999999999999998766677777775321       122221   1     247999888


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +. ++.+    ....++.++++..++.++-
T Consensus       106 ~g-~~~~----~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2         106 SG-NEKC----ITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             SC-CHHH----HHHHHHHSCTTCEEEECSC
T ss_pred             CC-ChHH----HHHHHHHHhcCCceEEEec
Confidence            86 2222    2566788999999988864

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=2.1e-06  Score=65.86  Aligned_cols=73  Identities=15%  Similarity=0.153  Sum_probs=53.3

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHH----Hhh----CC----eec---CCHHhhcccCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE----KET----GA----KFE---EDLDTMLPKCD   94 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~----~~~----g~----~~~---~~l~e~l~~aD   94 (223)
                      +.++.+++|.|+|.|..|++++..+...|. ++.+++|+....+..    +++    ..    ...   .++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            346899999999999999999999998888 588999986544322    111    11    011   23445677899


Q ss_pred             EEEEcCCCC
Q 027408           95 IVVVNTPLT  103 (223)
Q Consensus        95 vVv~~~p~~  103 (223)
                      +|+.++|..
T Consensus        93 iiIN~Tp~G  101 (182)
T d1vi2a1          93 ILTNGTKVG  101 (182)
T ss_dssp             EEEECSSTT
T ss_pred             eeccccCCc
Confidence            999999954

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.09  E-value=6.8e-06  Score=62.74  Aligned_cols=107  Identities=19%  Similarity=0.318  Sum_probs=69.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCC-hhHHHhhCC----eecCCHHhhcc--cCCEEEEcCCCChhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMD-PQLEKETGA----KFEEDLDTMLP--KCDIVVVNTPLTEKTR  107 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~-~~~~~~~g~----~~~~~l~e~l~--~aDvVv~~~p~~~~t~  107 (223)
                      .+|||||+|.+|+..++.++.. +++|. ++|++... .+...++++    ..+++++++++  +.|+|++++|..... 
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~-   80 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV-   80 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc-
Confidence            3799999999999999999765 67766 66876422 233444453    35679999984  579999999933222 


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCccE
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIAG  149 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~---~al~~~L~~g~i~~  149 (223)
                          +-....++.|.-++- -..-..+.   +.|.+..++..+..
T Consensus        81 ----~~~~~~l~~g~~v~~-EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          81 ----EWAIKAAEKGKHILL-EKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             ----HHHHHHHTTTCEEEE-CSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             ----chhhhhhhccceeec-ccccccCHHHHHHHHHHHHhhCCEE
Confidence                334455566665542 23222333   45667777766653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=1.6e-06  Score=66.29  Aligned_cols=89  Identities=17%  Similarity=0.227  Sum_probs=63.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhc---------ccCCEEEEc
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML---------PKCDIVVVN   99 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l---------~~aDvVv~~   99 (223)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.++++...+.++++|...+     .+..+..         ...|+|+-+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~  107 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  107 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeec
Confidence            58999999999999999999999998 79999998766677777775321     2322221         136888877


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      +... .+    .+..++.++++..++-++
T Consensus       108 vG~~-~~----~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         108 TGDS-RA----LLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             SSCT-TH----HHHHHHHEEEEEEEEECC
T ss_pred             CCch-hH----HHHHHHHhcCCCEEEEEe
Confidence            7521 11    255667778877776664

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=98.06  E-value=1.5e-05  Score=63.83  Aligned_cols=109  Identities=21%  Similarity=0.331  Sum_probs=76.0

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC--------CChhHH----------------HhhCCeecCCHH
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--------MDPQLE----------------KETGAKFEEDLD   87 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~--------~~~~~~----------------~~~g~~~~~~l~   87 (223)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++++...        ...+..                ...+.....+.+
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  106 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence            36999999999999999999999999999988665321        111111                111233344456


Q ss_pred             hhc-ccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           88 TML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        88 e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +++ .+||+++-|..     .+.|+.+..+.++- .+|+-.+.+++ ..++ .+.|.+..|.
T Consensus       107 ~i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         107 AIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hhccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            666 47999999986     56777887787763 46666666665 6666 4777777766

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.04  E-value=1.3e-05  Score=60.09  Aligned_cols=90  Identities=13%  Similarity=0.235  Sum_probs=60.9

Q ss_pred             CEEEEEcccHHHHH-HHHHHccCC-CeEE-EEcCCCCCh--hHHHhhCCeec-CCHHhhc-----ccCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKPFN-CNLL-YHDRVKMDP--QLEKETGAKFE-EDLDTML-----PKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~~G-~~V~-~~d~~~~~~--~~~~~~g~~~~-~~l~e~l-----~~aDvVv~~~p~~~~  105 (223)
                      .+|||||.|.||+. +.+.++.+. .++. +.+++....  ..++++++... .++++++     .+.|+|++++|....
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            48999999999986 567777664 4554 567765433  45667777543 3455543     468999999993222


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                         .-.+..++..+.|..+||-+.
T Consensus        85 ---~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 ---VQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             ---HHHHHHHHHHCTTCEEEECST
T ss_pred             ---HHhHHHHHHHHcCCEEEEccc
Confidence               222345667799999999875

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.04  E-value=3.2e-06  Score=63.70  Aligned_cols=107  Identities=14%  Similarity=0.213  Sum_probs=65.5

Q ss_pred             CEEEEEcccHHHHH-HHHHHccC-CCeEEEEcCCCCC-hhHHHhhCCe-ecCCHHhhcc-cCCEEEEcCCCChhhhhccc
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLLYHDRVKMD-PQLEKETGAK-FEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~~-G~~V~~~d~~~~~-~~~~~~~g~~-~~~~l~e~l~-~aDvVv~~~p~~~~t~~~i~  111 (223)
                      .+|||||+|.+|+. ....++.. +.++.++|+++.. ...++.++.. .+++.+++++ +.|+|++++|.  .++.-+-
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~--~~H~~~~   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAAT--DVHSTLA   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCG--GGHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccc--ccccccc
Confidence            48999999999976 56777665 5678899987532 2344455653 4678888885 57999999993  3322222


Q ss_pred             HHHHhcCCCCc-EEEEcCCC-CccCHHHHHHHHHhCCcc
Q 027408          112 KDRIAKMKKGV-LIVNNARG-AIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       112 ~~~~~~mk~ga-~ivn~srg-~~vd~~al~~~L~~g~i~  148 (223)
                      ...+   +.|. +++.---+ .+-+...|.++.++....
T Consensus        80 ~~al---~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFL---HLGIPTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHH---HTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccc---ccccccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            3333   3443 34332211 223445566666655543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.01  E-value=2.3e-06  Score=65.22  Aligned_cols=90  Identities=18%  Similarity=0.152  Sum_probs=67.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p~  102 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++...+.++++|...+     .++.+.+      ...|+|+-++..
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            58899999999999999999999998 69999998766777888886322     2222222      127999999873


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      ..     .-++.+..++++..++.++-
T Consensus       107 ~~-----~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2         107 SE-----TLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             TT-----HHHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHHhcCCEEEEEee
Confidence            22     12566788899988888863

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.97  E-value=1.8e-06  Score=65.71  Aligned_cols=72  Identities=18%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhhC----CeecCCHHhhcccCCEEEEcCCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETG----AKFEEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g----~~~~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ..+.|++|.|+|.|..+++++..|...+.+|.+++|+....+ ..+.++    +......+..+.++|+|+.|+|..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG   90 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence            357999999999999999999999887789999999863222 222222    222222222357899999999943

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=3.1e-06  Score=64.42  Aligned_cols=95  Identities=19%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             cccCCCCCEEEEEcccHH-HHHHHHHHccCCCeEEEEcCCCCChhHHHhh-------CCe---e--cCCHHhhcccCCEE
Q 027408           30 RAYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------GAK---F--EEDLDTMLPKCDIV   96 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------g~~---~--~~~l~e~l~~aDvV   96 (223)
                      .+.++.||++.|||-+.+ |+.+|..|...|+.|..++..... +.....       +..   .  .+.+++...++|+|
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIv  101 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQ-KFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEE-EEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccc-ccccccceeeeeeccccccccchhHHhhccccCCEE
Confidence            356899999999998765 999999999999999988764211 000000       000   0  12366777899999


Q ss_pred             EEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +.+++...   ..+..   +..|+|+++||++-..
T Consensus       102 IsavG~p~---~~i~~---d~ik~GavvIDvGi~~  130 (171)
T d1edza1         102 ITGVPSEN---YKFPT---EYIKEGAVCINFACTK  130 (171)
T ss_dssp             EECCCCTT---CCBCT---TTSCTTEEEEECSSSC
T ss_pred             EEccCCCc---cccCh---hhcccCceEeeccccc
Confidence            99998221   11322   3468999999998654

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.92  E-value=4.6e-05  Score=60.91  Aligned_cols=110  Identities=12%  Similarity=0.127  Sum_probs=83.6

Q ss_pred             EEEEEcccH--HHHHHHHH------HccCCCeEEEEcCCCCC---------hhH--------------------------
Q 027408           38 TVGTVGCGR--IGKLLLQR------LKPFNCNLLYHDRVKMD---------PQL--------------------------   74 (223)
Q Consensus        38 ~igIiG~G~--iG~~iA~~------l~~~G~~V~~~d~~~~~---------~~~--------------------------   74 (223)
                      +++++|.|.  +|..+++.      +...|..|+..|-++..         .+.                          
T Consensus        42 ~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~  121 (242)
T d2b0ja2          42 SSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHL  121 (242)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEES
T ss_pred             eeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhc
Confidence            466888886  77778774      56778888888765311         000                          


Q ss_pred             --HHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           75 --EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        75 --~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                        .++.|+...++..|+++++|+|++++|..+.+..++ ++..+.++++++++|+|.........+.+.++...+.
T Consensus       122 ~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         122 VHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             SCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             CCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence              001245556899999999999999999766666666 7889999999999999999888888888888887776

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.91  E-value=2.5e-05  Score=63.05  Aligned_cols=111  Identities=16%  Similarity=0.160  Sum_probs=71.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEE--------cCCCCChh-H------------------HHhhCCeecC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQ-L------------------EKETGAKFEE   84 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~--------d~~~~~~~-~------------------~~~~g~~~~~   84 (223)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|+++        |+.....+ .                  ....+.+.+ 
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  110 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-  110 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-
Confidence            4689999999999999999999999999998754        44332111 1                  111122322 


Q ss_pred             CHHhhc-ccCCEEEEcCCCChhhhhcccHHHHhcCCC-CcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        85 ~l~e~l-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~-ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +.++++ .+||+++-|.-     .+.|+.+..+.++. ++.+|--+....+..++....|+++.|.
T Consensus       111 ~~~~~~~~~~DiliPcA~-----~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~ll~~~gI~  171 (255)
T d1bgva1         111 PGEKPWGQKVDIIMPCAT-----QNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMV  171 (255)
T ss_dssp             ETCCGGGSCCSEEECCSC-----TTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHCTTCE
T ss_pred             chhhcccccccEEeeccc-----cccccHHHHHhhhhcCceEEecCCCCCcchHHHHHHHHhcCCE
Confidence            233443 46999987754     66788888777753 4544444444445555655566766655

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.88  E-value=8.3e-05  Score=55.72  Aligned_cols=96  Identities=13%  Similarity=0.165  Sum_probs=69.2

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC-C-ChhHH---Hh----h--CCeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK-M-DPQLE---KE----T--GAKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~-~-~~~~~---~~----~--g~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      +|.|++|++||- .++.++++..+..||+++.++.|.. . +.+..   ++    .  .+....++++.++.+|+|....
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            479999999995 5788999999999999999998854 2 22211   11    1  2345679999999999998753


Q ss_pred             CCC-------hh-----hhhcccHHHHhcCCCCcEEEEcC
Q 027408          101 PLT-------EK-----TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       101 p~~-------~~-----t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      =..       +.     ....++.+.++.+|++++|..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            111       11     12456888999999999987763

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.85  E-value=1.9e-05  Score=60.62  Aligned_cols=39  Identities=15%  Similarity=0.154  Sum_probs=36.3

Q ss_pred             ccCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        31 ~~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +.+|.||++.|.| .|.||+.+|+.|...|++|++++|+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            4589999999999 69999999999999999999999975

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.85  E-value=6.5e-06  Score=61.69  Aligned_cols=89  Identities=19%  Similarity=0.216  Sum_probs=63.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc----ccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----PKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l----~~aDvVv~~~p~~~~  105 (223)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.++++...+.++++|...+     .+..+.+    ...|.++.++.. +.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~-~~  105 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS-NS  105 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC-HH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc-ch
Confidence            5889999999999999999999999999999998766677777776421     1222222    234555665552 22


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      +    -...++.++++..++.++
T Consensus       106 ~----~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         106 A----FGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             H----HHHHHTTEEEEEEEEECC
T ss_pred             H----HHHHHHHhcCCcEEEEEE
Confidence            1    256778888888888875

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.83  E-value=5.4e-05  Score=60.25  Aligned_cols=109  Identities=18%  Similarity=0.231  Sum_probs=75.6

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHc-cCCCeEEEEcC--------CCCChhHHH----h-------hCCeecCCHHhhc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDR--------VKMDPQLEK----E-------TGAKFEEDLDTML   90 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~--------~~~~~~~~~----~-------~g~~~~~~l~e~l   90 (223)
                      +.++.|++|.|-|+|++|+.+|+.|. ..|++|++++-        .....+...    .       .+.+.. +.++++
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~  104 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELL  104 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHH
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-cccccc
Confidence            34689999999999999999999995 67999876542        221111111    1       112223 566776


Q ss_pred             c-cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           91 P-KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        91 ~-~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      . +||+++-|.-     .+.|+.+....++- .+|+-.+.+.+ ..++ .+.|.+..|.
T Consensus       105 ~~~~DI~~PcA~-----~~~I~~~~a~~l~~-~~I~e~AN~p~-t~~a-~~~L~~rgI~  155 (234)
T d1b26a1         105 ELDVDILVPAAL-----EGAIHAGNAERIKA-KAVVEGANGPT-TPEA-DEILSRRGIL  155 (234)
T ss_dssp             TSCCSEEEECSC-----TTCBCHHHHTTCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ccccceeecchh-----cccccHHHHHHhhh-ceEeecCCCCC-CHHH-HHHHHHCCeE
Confidence            5 7999988865     67899999999975 46666666665 5555 4677777766

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=2e-05  Score=55.61  Aligned_cols=40  Identities=20%  Similarity=0.300  Sum_probs=35.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~   72 (223)
                      ...+.||||+|.|..|+.+|..++.+|++++++|+++..+
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            3467789999999999999999999999999999987544

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.83  E-value=0.0001  Score=54.56  Aligned_cols=95  Identities=23%  Similarity=0.255  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCC---CChhHHHhh--CCeecCCHHhhcccCCEEEEcCCCCh-
Q 027408           34 LEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVK---MDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTE-  104 (223)
Q Consensus        34 l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~---~~~~~~~~~--g~~~~~~l~e~l~~aDvVv~~~p~~~-  104 (223)
                      |.|++|++||=   |++.++++..+..+|+++.++.+..   .........  .+...+++++.++++|+|...--..+ 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            67999999994   6799999999999999976655432   112222222  34566799999999999876422111 


Q ss_pred             ----------hhhhcccHHHHhcCCCCcEEEEcC
Q 027408          105 ----------KTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       105 ----------~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                                .....++.+.++.++++++|..+.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence                      012236788888888888887653

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.82  E-value=1.2e-05  Score=63.32  Aligned_cols=85  Identities=16%  Similarity=0.171  Sum_probs=55.4

Q ss_pred             CCEEEEEcccHHHHH-HHHHHccC-CCeEE-EEcCCCCC-hhHHHhhCCe-----ecCCHHhhcc--cCCEEEEcCCCCh
Q 027408           36 GKTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMD-PQLEKETGAK-----FEEDLDTMLP--KCDIVVVNTPLTE  104 (223)
Q Consensus        36 g~~igIiG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~-~~~~~~~g~~-----~~~~l~e~l~--~aDvVv~~~p~~~  104 (223)
                      --+|||||+|.+|+. ++..++.. +++|. ++|+++.. .+.++++++.     .+++++++++  +.|+|++++|  +
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp--~  110 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILP--N  110 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSC--G
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccc--h
Confidence            348999999999975 56666654 67765 78887532 3344555542     3578999985  5899999999  3


Q ss_pred             hhhhcccHHHHhcCCCCcEEE
Q 027408          105 KTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      .++.   +-....|+.|..++
T Consensus       111 ~~H~---~~~~~al~~gk~v~  128 (221)
T d1h6da1         111 SLHA---EFAIRAFKAGKHVM  128 (221)
T ss_dssp             GGHH---HHHHHHHHTTCEEE
T ss_pred             hhhh---hHHHHhhhcchhhh
Confidence            3322   33334445555444

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.82  E-value=8e-06  Score=61.88  Aligned_cols=90  Identities=18%  Similarity=0.139  Sum_probs=65.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhhCCeec-----CCHHhhcc-----cCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP-----KCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l~-----~aDvVv~~~p~~  103 (223)
                      .|.+|.|+|.|.+|...++.++.+|.+ |++.++++...+.++++|...+     .+..+.+.     ..|+|+.|+.. 
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~-  106 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS-  106 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC-
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCc-
Confidence            688999999999999999999999986 5677877666677788886322     23333221     27999988872 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +.    ..+..++.++++..++.++-
T Consensus       107 ~~----~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         107 PE----ILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             HH----HHHHHHHTEEEEEEEEECCC
T ss_pred             HH----HHHHHHhcccCceEEEEEee
Confidence            22    22567888899888888763

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=1.5e-05  Score=60.74  Aligned_cols=107  Identities=20%  Similarity=0.336  Sum_probs=64.0

Q ss_pred             CEEEEEcccHHHHH-HHHHHccCC--CeEE-EEcCCCCC-hhHHHhhCCe-ecCCHHhhcc--cCCEEEEcCCCChhhhh
Q 027408           37 KTVGTVGCGRIGKL-LLQRLKPFN--CNLL-YHDRVKMD-PQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        37 ~~igIiG~G~iG~~-iA~~l~~~G--~~V~-~~d~~~~~-~~~~~~~g~~-~~~~l~e~l~--~aDvVv~~~p~~~~t~~  108 (223)
                      .+|||||+|.+|+. .+..++..+  ++|. ++|+++.. ....+.++.. .+++++|+++  +.|+|++++|.  .++.
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~--~~h~   81 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV--ELNL   81 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG--GGHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccc--cccc
Confidence            47999999999987 577777654  4655 77886532 2334456653 5689999985  57999999993  3332


Q ss_pred             cccHHHHhcCCCCcEEE-EcCC-CCccCHHHHHHHHHhCCcc
Q 027408          109 MFDKDRIAKMKKGVLIV-NNAR-GAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~iv-n~sr-g~~vd~~al~~~L~~g~i~  148 (223)
                      -+-...   ++.|..++ .--- -.+-+...|.+..++....
T Consensus        82 ~~~~~a---l~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          82 PFIEKA---LRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             HHHHHH---HHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             cccccc---cccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            222333   34444443 2211 1223334466666555444

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.82  E-value=7.7e-06  Score=61.82  Aligned_cols=66  Identities=21%  Similarity=0.223  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC-ChhHHHhhCCeecCCHHhhcccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~-~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      .+++|.|+|.|..|++++..|+..|+ +|.+++|+.. ...+...++.....+..  ..++|+||.|+|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence            57899999999999999999999997 6999999863 22334455555443332  3578999999983

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.81  E-value=5.4e-05  Score=57.36  Aligned_cols=89  Identities=15%  Similarity=0.022  Sum_probs=66.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecC-------CHHhhc-----ccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDTML-----PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~e~l-----~~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+++...+.++++|...+.       ..+...     ..+|+++-|+.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            68899999999999999999999998 588899988778888888864321       112222     35799999987


Q ss_pred             CChhhhhcccHHHHhcCCCC-cEEEEcC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~ivn~s  128 (223)
                      . +.    ...+.+..++++ ..++-++
T Consensus       108 ~-~~----~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         108 T-AQ----TLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             C-HH----HHHHHHHTBCTTTCEEEECC
T ss_pred             c-ch----HHHHHHHHhhcCCeEEEecC
Confidence            2 22    236777888885 5666665

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.78  E-value=5e-05  Score=55.64  Aligned_cols=94  Identities=24%  Similarity=0.286  Sum_probs=58.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChhHH-Hh---------hCCe-ecCCHHhhcccCCEEEEcC--C
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLE-KE---------TGAK-FEEDLDTMLPKCDIVVVNT--P  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~-~~---------~g~~-~~~~l~e~l~~aDvVv~~~--p  101 (223)
                      +||+|||.|.+|..+|..+...|.  ++..+|.++...+.. ..         .... ..++..+.+++||+|+++.  |
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            589999999999999999987764  799999876432211 11         0111 1134456788999999985  3


Q ss_pred             CChh-hhhc-c--c----H---HHHhcCCCCcEEEEcCCC
Q 027408          102 LTEK-TRGM-F--D----K---DRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       102 ~~~~-t~~~-i--~----~---~~~~~mk~ga~ivn~srg  130 (223)
                      ..+. ++.. +  |    .   +.+....|++++++++..
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP  120 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC
Confidence            2331 1110 0  1    1   222333578999998653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.78  E-value=9.2e-06  Score=61.81  Aligned_cols=71  Identities=24%  Similarity=0.295  Sum_probs=52.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhh----CC-----eecCCHHhhcccCCEEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKET----GA-----KFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~----g~-----~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .++.||+|.|+|.|..+++++..|...| +|.+++|+....+ ....+    ..     ....+++..+..+|+|+.++|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            4689999999999999999999998877 8999999753222 22111    11     123456667788999999999


Q ss_pred             CC
Q 027408          102 LT  103 (223)
Q Consensus       102 ~~  103 (223)
                      ..
T Consensus        93 ~g   94 (177)
T d1nvta1          93 IG   94 (177)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.77  E-value=3.5e-05  Score=56.97  Aligned_cols=94  Identities=14%  Similarity=0.208  Sum_probs=56.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh---hCC--eecCCHHhhcccCCEEEEcCCCCh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE---TGA--KFEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~---~g~--~~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      |||+|||.|.+|..+|..+...|.  ++..+|.+....+     ....   .+.  ....+-.+.+++||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            799999999999999998876664  7999998652211     1110   111  111222355789999999865321


Q ss_pred             -------hhh--------hccc--HHHHhcCCCCcEEEEcCCC
Q 027408          105 -------KTR--------GMFD--KDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       105 -------~t~--------~~i~--~~~~~~mk~ga~ivn~srg  130 (223)
                             .++        .++.  .+.++...|++++++++..
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  124 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP  124 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence                   011        1110  1223445688999998753

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.77  E-value=4.7e-05  Score=58.10  Aligned_cols=64  Identities=23%  Similarity=0.296  Sum_probs=44.0

Q ss_pred             EEEEEcccHHHHHHHHHHccC-CCeEEEEc-CCCCChhHH-------------------HhhCCeecCCHHhhcccCCEE
Q 027408           38 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHD-RVKMDPQLE-------------------KETGAKFEEDLDTMLPKCDIV   96 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~-G~~V~~~d-~~~~~~~~~-------------------~~~g~~~~~~l~e~l~~aDvV   96 (223)
                      ||||.|+|+||+.+++.+... +++|.+++ +.+. ....                   .+.++....+++++..++|+|
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPN-YEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCS-HHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCc-HHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            799999999999999999765 57877654 4332 1111                   111222234667777889999


Q ss_pred             EEcCCC
Q 027408           97 VVNTPL  102 (223)
Q Consensus        97 v~~~p~  102 (223)
                      +-|+|.
T Consensus        82 iecTG~   87 (178)
T d1b7go1          82 VDTTPN   87 (178)
T ss_dssp             EECCST
T ss_pred             EECCCC
Confidence            999994

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.76  E-value=1.8e-05  Score=66.46  Aligned_cols=91  Identities=10%  Similarity=0.179  Sum_probs=67.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHc-cCCC-eEEEEcCCCCCh-hHHHh----hCC--eecCCHHhhcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDP-QLEKE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~-~~~~~----~g~--~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      .-++++|||.|..+...++.+. -++. +|.+|+|++... +..++    .|+  ..+++++++++.||+|+.|++. +.
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas-~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD-KA  205 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC-SS
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc-CC
Confidence            4579999999999999998774 5666 599999986332 22222    244  3578999999999999988863 33


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +..++..   +.+|||+.|..++.
T Consensus       206 ~~Pv~~~---~~l~pG~hI~aiGs  226 (340)
T d1x7da_         206 YATIITP---DMLEPGMHLNAVGG  226 (340)
T ss_dssp             EEEEECG---GGCCTTCEEEECSC
T ss_pred             CCcccch---hhcCCCCEEeeccc
Confidence            4456654   46799999988875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.74  E-value=1.6e-05  Score=59.36  Aligned_cols=90  Identities=22%  Similarity=0.251  Sum_probs=66.2

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHh----hcccCCEEEEcCCCChh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----MLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----~l~~aDvVv~~~p~~~~  105 (223)
                      .|.+|.|.|.|.||...++.++..|.+|++.++++...+..+++|...+     .++.+    .-...|.++.+.. .+.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~  105 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP  105 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence            5889999999999999999999999999999987766667777776432     12222    2344566666665 222


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      +    -...+..++++..++.++-
T Consensus       106 ~----~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2         106 A----FQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             H----HHHHHHHEEEEEEEEECCC
T ss_pred             H----HHHHHHHhccCCceEeccc
Confidence            2    2677888899988888853

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.73  E-value=2.7e-05  Score=64.79  Aligned_cols=90  Identities=18%  Similarity=0.319  Sum_probs=66.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHcc-CCC-eEEEEcCCCCChhH----HHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQL----EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~----~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      .-++++|||.|..++..++.+.. +.. +|.+|+|++...+.    ....++....+.++.+.+||+|+.++|.   +..
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s---~~P  200 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS---RKP  200 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC---SSC
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC---ccc
Confidence            45689999999999999998864 565 69999997633221    2233455555778888999999999884   344


Q ss_pred             cccHHHHhcCCCCcEEEEcCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg  130 (223)
                      ++..   +.+++|+.|..++..
T Consensus       201 ~~~~---~~l~~G~hv~~iGs~  219 (320)
T d1omoa_         201 VVKA---EWVEEGTHINAIGAD  219 (320)
T ss_dssp             CBCG---GGCCTTCEEEECSCC
T ss_pred             ccch---hhcCCCCeEeecCCc
Confidence            5654   358999999999853

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.2e-05  Score=58.29  Aligned_cols=89  Identities=13%  Similarity=0.159  Sum_probs=64.7

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p~  102 (223)
                      .|.+|.|.|. |.+|....+.++.+|++|++.++++...+.++++|...+     .++.+.+      ...|+|+-++. 
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence            6889999995 999999999999999999998876655566777776422     2333322      23688877764 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       ..    ..+..++.++++..++.++.
T Consensus       107 -~~----~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2         107 -NV----NLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             -HH----HHHHHHHHEEEEEEEEECCC
T ss_pred             -HH----HHHHHHhccCCCCEEEEEec
Confidence             11    22567788899888888853

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=2.6e-05  Score=57.15  Aligned_cols=94  Identities=18%  Similarity=0.206  Sum_probs=56.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHh------h--CCeecCCHHhhcccCCEEEEcCCC--C
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE------T--GAKFEEDLDTMLPKCDIVVVNTPL--T  103 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~------~--g~~~~~~l~e~l~~aDvVv~~~p~--~  103 (223)
                      +||+|||.|.+|..+|..+...+  .++..+|.++...+ .+.+      +  ......+..+.+++||+|+++...  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            58999999999999998886544  57999998642111 1111      0  111223334568899999998632  2


Q ss_pred             hh-hh-hcc--c-------HHHHhcCCCCcEEEEcCCC
Q 027408          104 EK-TR-GMF--D-------KDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       104 ~~-t~-~~i--~-------~~~~~~mk~ga~ivn~srg  130 (223)
                      +. ++ .++  |       .+.+....|++++++++..
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP  118 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc
Confidence            11 11 111  1       1233444688999998754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.71  E-value=0.00011  Score=55.60  Aligned_cols=90  Identities=17%  Similarity=0.065  Sum_probs=65.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec------CC-HHhhc-----ccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE------ED-LDTML-----PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~------~~-l~e~l-----~~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++...+.++++|...+      ++ .+++.     ...|+++.++.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g  108 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIG  108 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCC
Confidence            68899999999999999999999995 79999999888888999887532      11 22221     35899998887


Q ss_pred             CChhhhhcccHHHHhcCC-CCcEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMK-KGVLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk-~ga~ivn~sr  129 (223)
                      ..+.     ....+..+. .+..++.++-
T Consensus       109 ~~~~-----~~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2         109 HLET-----MIDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             CHHH-----HHHHHTTSCTTTCEEEECSC
T ss_pred             chHH-----HHHHHHHhhcCCeEEEEEEc
Confidence            2221     234445554 4467777753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.70  E-value=9.3e-05  Score=55.89  Aligned_cols=89  Identities=16%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecCC-------HHhhc-----ccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-------LDTML-----PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~-------l~e~l-----~~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...++.++..|. +|++.|++....+.++++|...+-+       .++..     ...|+++.++.
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g  106 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  106 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCC
Confidence            68899999999999999999999997 6999999887788888888753311       23332     24799998887


Q ss_pred             CChhhhhcccHHHHhcCCC-CcEEEEcC
Q 027408          102 LTEKTRGMFDKDRIAKMKK-GVLIVNNA  128 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~-ga~ivn~s  128 (223)
                      ..+.    + ...+..+++ +..++-++
T Consensus       107 ~~~~----~-~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2         107 RIET----M-MNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             CHHH----H-HHHHHTBCTTTCEEEECC
T ss_pred             CchH----H-HHHHHHHHHhcCceEEEE
Confidence            3221    2 344444544 34555443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.70  E-value=1.6e-05  Score=60.06  Aligned_cols=87  Identities=15%  Similarity=0.156  Sum_probs=65.4

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhh------cccCCEEEEcCCCChhhh
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM------LPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~------l~~aDvVv~~~p~~~~t~  107 (223)
                      .|++|.|.|. |.+|...++.++.+|++|++.++++...+.++++|...+.+..+.      ...+|+|+-++.  +.  
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~--  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE--  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TT--
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hh--
Confidence            6889999995 999999999999999999999987766677778887543222222      245898888765  11  


Q ss_pred             hcccHHHHhcCCCCcEEEEcC
Q 027408          108 GMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~s  128 (223)
                         ..+.++.++++..++.++
T Consensus       103 ---~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         103 ---VEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             ---HHHHHTTEEEEEEEEEC-
T ss_pred             ---HHHHHHHHhcCCcEEEEe
Confidence               156788899988888875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.68  E-value=4.5e-05  Score=56.77  Aligned_cols=67  Identities=22%  Similarity=0.254  Sum_probs=48.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHh-------hC----CeecCCHHhhcccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE-------TG----AKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~-------~g----~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      +-+||+|||.|.+|+.+|..+...+. ++..+|.++...+ .+.+       .+    .....+.++.+++||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            46899999999999999988876664 7999998763221 1111       11    1223466788999999999874

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.67  E-value=0.00013  Score=53.52  Aligned_cols=94  Identities=19%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCC-hhHHHhhC--------CeecCCHHhhcccCCEEEEcCCCChh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMD-PQLEKETG--------AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~-~~~~~~~g--------~~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      +||+|||.|.+|..+|..+...+.  ++..+|+.+.. ...+.++.        ......-.+.+++||+|+++......
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            479999999999999998876665  79999987632 22222211        11122334567899999998542221


Q ss_pred             ---hh-hcc--c----H---HHHhcCCCCcEEEEcCCC
Q 027408          106 ---TR-GMF--D----K---DRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       106 ---t~-~~i--~----~---~~~~~mk~ga~ivn~srg  130 (223)
                         ++ .++  |    +   +.+....|.+++++++..
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  119 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  119 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence               11 011  1    1   123334578899998763

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=3.8e-05  Score=58.07  Aligned_cols=89  Identities=11%  Similarity=0.171  Sum_probs=63.9

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p~  102 (223)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++....+..++.|....     .++.+.+      ...|+|+.++. 
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g-  103 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  103 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEeccc-
Confidence            4789999885 999999999999999999988876544566666665321     2333332      34788888776 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                       .++    .+..++.++++..+|+++.
T Consensus       104 -~~~----~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         104 -GEA----IQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             -THH----HHHHHHTEEEEEEEEECSC
T ss_pred             -chH----HHHHHHHhcCCCEEEEEcc
Confidence             121    2567788888888888854

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.63  E-value=3.3e-05  Score=57.14  Aligned_cols=68  Identities=15%  Similarity=0.105  Sum_probs=46.7

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHh---------hCCeecCCHHhhcccCCEEEEcCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE---------TGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~---------~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      -.++||+|||.|.+|..+|..+...|.  ++..+|+.+...+ .+.+         ..........+.+++||+|+++..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            467899999999999999999976654  7999998642211 1111         112222334467889999999764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=2.7e-05  Score=60.07  Aligned_cols=68  Identities=19%  Similarity=0.130  Sum_probs=50.0

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-------ecCCHHhhcccCCEEEEcCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ..|||.|+| .|.+|+.+++.|...|++|.++.|++.........+++       ..++++++++++|+|+.++..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            468999999 59999999999999999999999875322211122222       124566778999999988753

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.59  E-value=7.4e-05  Score=56.60  Aligned_cols=87  Identities=21%  Similarity=0.260  Sum_probs=50.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEEEEc-CCCCCh-hHHHhhC------------------CeecCCHHhhcccCCE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHD-RVKMDP-QLEKETG------------------AKFEEDLDTMLPKCDI   95 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~~~d-~~~~~~-~~~~~~g------------------~~~~~~l~e~l~~aDv   95 (223)
                      ++|||-|||+||+.+++.+... ..+|...+ +.+... .....++                  +....+..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            5899999999999999988655 46766554 443211 1111112                  1111245566778999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      |+-|+|.....     +..-.+++.|+-+|-.+
T Consensus        82 ViEcTG~f~~~-----~~~~~hl~~G~K~vi~~  109 (171)
T d1cf2o1          82 VIDCTPEGIGA-----KNLKMYKEKGIKAIFQG  109 (171)
T ss_dssp             EEECCSTTHHH-----HHHHHHHHTTCEEEECT
T ss_pred             EEEccCCCCCH-----HHHHHHHHcCCCEEEEC
Confidence            99999843322     22223344555555443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.56  E-value=2.5e-05  Score=58.53  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=31.1

Q ss_pred             CEEEEE-cccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIi-G~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +||+|+ |.|.||+++|+.|...|++|.+++|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999 799999999999999999999999975

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=4.3e-05  Score=56.29  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=35.1

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      ..+|+||+|.|||.|.+|..-|+.|...|++|+++++.
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45799999999999999999999999999999999764

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.56  E-value=0.00015  Score=54.91  Aligned_cols=87  Identities=26%  Similarity=0.278  Sum_probs=52.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEE-EEcCCCCCh-hHHHhhC------------------CeecCCHHhhcccCCE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDP-QLEKETG------------------AKFEEDLDTMLPKCDI   95 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~-~~~~~~g------------------~~~~~~l~e~l~~aDv   95 (223)
                      .||||.|+|+||+.+++.+... .++|. +.|+.+... .....++                  .....++.++..++|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            4899999999999999998654 46765 445543211 1112222                  2222356667778999


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      |+-|+|.-...     +..-.+++.|+-.|-.|
T Consensus        83 ViEcTG~f~~~-----~~~~~hl~~G~k~Vi~s  110 (172)
T d2czca2          83 IVDATPGGIGA-----KNKPLYEKAGVKAIFQG  110 (172)
T ss_dssp             EEECCSTTHHH-----HHHHHHHHHTCEEEECT
T ss_pred             EEECCCCCCCH-----HHHHHHHHcCCCEEEEC
Confidence            99998833222     22334455566555444

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.54  E-value=0.00042  Score=51.44  Aligned_cols=95  Identities=16%  Similarity=0.170  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcc--cHHHHHHHHHHccCCCeEEEEcCCC-CC-hh-------HHHhhC--CeecCCHHhhcccCCEEEEcC
Q 027408           34 LEGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVK-MD-PQ-------LEKETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        34 l~g~~igIiG~--G~iG~~iA~~l~~~G~~V~~~d~~~-~~-~~-------~~~~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      |.|++|++||=  .++.++++..+..+|+++.++.|.. .. .+       .+...+  +...+++++.++.+|+|....
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            68999999993  6899999999999999999998853 22 21       112222  345679999999999998865


Q ss_pred             CCChh------------hhh-cccHHHHhcCCCCcEEEEcC
Q 027408          101 PLTEK------------TRG-MFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       101 p~~~~------------t~~-~i~~~~~~~mk~ga~ivn~s  128 (223)
                      --...            ... ..........|+++++..+.
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l  121 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  121 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence            32110            111 22333344567788887764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.53  E-value=0.00022  Score=52.73  Aligned_cols=95  Identities=21%  Similarity=0.276  Sum_probs=58.2

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHh-------hCC--ee-cCCHHhhcccCCEEEEcCCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE-------TGA--KF-EEDLDTMLPKCDIVVVNTPLT  103 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~-------~g~--~~-~~~l~e~l~~aDvVv~~~p~~  103 (223)
                      ..||+|||.|.+|+.+|..+...+. ++..||+++...+ .+.+       .+.  .. ..+..+.+++||+|+++....
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            4689999999999999988876654 6999998663221 1111       111  11 123446678999999986522


Q ss_pred             hh---h-----hh-cc--c----HHH---HhcCCCCcEEEEcCCC
Q 027408          104 EK---T-----RG-MF--D----KDR---IAKMKKGVLIVNNARG  130 (223)
Q Consensus       104 ~~---t-----~~-~i--~----~~~---~~~mk~ga~ivn~srg  130 (223)
                      ..   +     +. ++  |    ++.   ++...|++++++++..
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            11   0     11 11  1    222   2333588999998764

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.53  E-value=6.4e-05  Score=54.56  Aligned_cols=89  Identities=20%  Similarity=0.223  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCC-------ChhHHH----hhCCeecCCHHhhcc
Q 027408           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKM-------DPQLEK----ETGAKFEEDLDTMLP   91 (223)
Q Consensus        33 ~l~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~-------~~~~~~----~~g~~~~~~l~e~l~   91 (223)
                      .+.+++|+|+|+          +.-.-.+++.|...|++|.+|||.-.       ..+...    ..+...++++++++.
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            467899999994          56688899999999999999998421       111111    112345679999999


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEc
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      .+|+|+++++-. +    + .+....++++.+|+|+
T Consensus        90 ~~D~ivi~t~h~-~----f-~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          90 SSDVLVLGNGDE-L----F-VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HCSEEEECSCCG-G----G-HHHHHSCCTTCEEEES
T ss_pred             hceEEEEEeCCH-H----H-HHHHHHhcCCCEEEEC
Confidence            999999999832 2    1 3456677788888887

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.51  E-value=0.00026  Score=56.36  Aligned_cols=107  Identities=20%  Similarity=0.292  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHc-cCCCeEEEEcCCCC--------Ch-hHH---Hhh-------CCeecCCHHhhc-c
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKM--------DP-QLE---KET-------GAKFEEDLDTML-P   91 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~-~~G~~V~~~d~~~~--------~~-~~~---~~~-------g~~~~~~l~e~l-~   91 (223)
                      .|.|+||+|-|+|++|..+|+.|. ..|.+|+...-+..        .. +..   ...       +.... +.++++ .
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~  107 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLEL  107 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccc
Confidence            489999999999999999999885 67999775543221        11 111   111       23333 556666 4


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +||+++-|.-     .+.|+.+..+.++- .+|+-.+-+++ ..++ .+.|.+..|.
T Consensus       108 ~~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~-t~ea-~~~L~~rgI~  156 (239)
T d1gtma1         108 EVDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPV-TPEA-DEILFEKGIL  156 (239)
T ss_dssp             CCSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCC-CHHH-HHHHHHCCCE
Confidence            7999999886     56777787777754 46666666665 4555 4667776665

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=4.6e-05  Score=50.21  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      |+|||+|.|..|+.++...+.+|.++.++|+...
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6899999999999999999999999999998653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.49  E-value=4.6e-05  Score=56.26  Aligned_cols=94  Identities=16%  Similarity=0.204  Sum_probs=56.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHh-------hC--CeecCCHHhhcccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------TG--AKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~-------~g--~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ..+||+|||.|.+|..+|..+...|  -++..+|+.+...+ .+.+       .+  .....+.++ +++||+|+++...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-hccccEEEEeccc
Confidence            5679999999999999999998766  47999998652111 1111       01  112335544 6899999998642


Q ss_pred             Chh---hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 027408          103 TEK---TR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~---t~--------~~i~--~~~~~~mk~ga~ivn~sr  129 (223)
                      ...   ++        .++.  .+.+....+.+++++++.
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            111   11        0110  122334467888888874

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.48  E-value=0.00028  Score=49.78  Aligned_cols=100  Identities=14%  Similarity=0.191  Sum_probs=70.5

Q ss_pred             CEEEEEc----ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVG----CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG----~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      |+|+|||    -|..|..+.+.|...|++|+.++|+..     .-.|...+.+++++-...|++++++|  ++...-+-+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~-----~i~G~~~y~sl~~lp~~~D~vvi~vp--~~~~~~~l~   74 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYD-----EIEGLKCYRSVRELPKDVDVIVFVVP--PKVGLQVAK   74 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS-----EETTEECBSSGGGSCTTCCEEEECSC--HHHHHHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccc-----cccCccccccchhccccceEEEEEeC--HHHHHHHHH
Confidence            6899999    478899999999999999999988642     13467777899998888999999999  333222223


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       113 ~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +..+ +....+++..+   . ..+.+.+.+++..+.
T Consensus        75 ~~~~-~g~k~v~~~~g---~-~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          75 EAVE-AGFKKLWFQPG---A-ESEEIRRFLEKAGVE  105 (116)
T ss_dssp             HHHH-TTCCEEEECTT---S-CCHHHHHHHHHHTCE
T ss_pred             HHHh-cCCceEEeccc---h-hhHHHHHHHHHcCCE
Confidence            3333 34446666433   2 344567777776665

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.46  E-value=3.6e-05  Score=57.95  Aligned_cols=90  Identities=16%  Similarity=0.161  Sum_probs=64.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHHhhc-----ccCCEEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l-----~~aDvVv~~~p~~  103 (223)
                      .|.+|.|+|.|.+|...++.++.+|. .|++.++++...+.++++|...+     ++.++..     ...|+|+.++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            58899999999999999999998886 57888887655667777775321     1222222     2378898888722


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      . +    -+..+..++++..++.++-
T Consensus       112 ~-~----~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         112 A-T----VDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             H-H----HHHGGGGEEEEEEEEECCC
T ss_pred             h-H----HHHHHHHHhCCCEEEEEeC
Confidence            1 1    2566788899988888764

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00064  Score=50.85  Aligned_cols=96  Identities=14%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEccc-HHHHHHHHHHccCCCeEEEEcCCCCC--hhH-------HHhhC--CeecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMD--PQL-------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~--~~~-------~~~~g--~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      +|.|++|++||-| ++.++++..+..+|+++.++.|....  .+.       ..+.+  +....++++.+..+|+|....
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            4789999999954 57788888888999999999875421  111       11223  356789999999999998876


Q ss_pred             CCChh------------hhhcccHHHHhcCCCCcEEEEcC
Q 027408          101 PLTEK------------TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       101 p~~~~------------t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      -....            ....++.+.++.++++++|..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            43221            12336777888888888887764

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.45  E-value=0.0004  Score=50.34  Aligned_cols=104  Identities=16%  Similarity=0.206  Sum_probs=71.7

Q ss_pred             CCCEEEEEcc----cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      .-|+|+|||.    ++.|..+.+.|+..|+++..+++++...+   -.|...+.++.++-...|++++++| .+.+..++
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v   87 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLKEPVDILDVFRP-PSALMDHL   87 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---eeceecccchhhccCCCceEEEecc-HHHHHHHH
Confidence            4678999995    88999999999999999999998653222   2466667889998888999999999 22233333


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                       ++..+ +...++++..+   ..++++ .+..++..+.
T Consensus        88 -~~~~~-~g~k~i~~q~G---~~~~e~-~~~a~~~Gi~  119 (136)
T d1iuka_          88 -PEVLA-LRPGLVWLQSG---IRHPEF-EKALKEAGIP  119 (136)
T ss_dssp             -HHHHH-HCCSCEEECTT---CCCHHH-HHHHHHTTCC
T ss_pred             -HHHHh-hCCCeEEEecC---ccCHHH-HHHHHHcCCE
Confidence             34333 35567777554   345554 4544444443

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.44  E-value=0.00056  Score=55.81  Aligned_cols=108  Identities=20%  Similarity=0.302  Sum_probs=72.8

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCC--------CCChhHHHh----hC------CeecCCHHhhc-cc
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--------KMDPQLEKE----TG------AKFEEDLDTML-PK   92 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~--------~~~~~~~~~----~g------~~~~~~l~e~l-~~   92 (223)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++++-+        ....+...+    .+      .... +.++++ ..
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~  110 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKI-YEGSILEVD  110 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCB-CCSCGGGCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeeccccccc-CCcccccCC
Confidence            4799999999999999999999999999998766532        112221111    11      0111 233455 47


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      ||+++-|.-     .+.|+.+....++- .+|+-.+.+++ ..++ .+.|.+..|.
T Consensus       111 ~DIliPaA~-----~~~I~~~~a~~l~a-k~I~EgAN~P~-t~eA-~~~L~~~gI~  158 (293)
T d1hwxa1         111 CDILIPAAS-----EKQLTKSNAPRVKA-KIIAEGANGPT-TPQA-DKIFLERNIM  158 (293)
T ss_dssp             CSEEEECSS-----SSCBCTTTGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ccEEeeccc-----cccccHHHHHHHhh-CEEeccCCCCC-Ccch-HHHHHHCCCE
Confidence            999998875     66788888888864 46667777774 5555 3667666665

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.42  E-value=0.00015  Score=53.06  Aligned_cols=64  Identities=19%  Similarity=0.271  Sum_probs=44.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHhh---------C--CeecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKET---------G--AKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~~---------g--~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      +||+|||.|.+|.++|..+...+. ++..+|..+...+. +.++         .  +....+.++ ++++|+|+++..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-TANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-GTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-hcCCCEEEEeee
Confidence            589999999999999998876554 79999986532211 1111         1  122344554 689999999874

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.41  E-value=0.00012  Score=53.82  Aligned_cols=92  Identities=25%  Similarity=0.303  Sum_probs=57.7

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhC-C---------eecCCHHhhcccCCEEEEcCC--
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETG-A---------KFEEDLDTMLPKCDIVVVNTP--  101 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g-~---------~~~~~l~e~l~~aDvVv~~~p--  101 (223)
                      .||+|||. |.+|+.+|..+...|.  ++..+|.+.. ...+.++. .         ....+..+.+++||+|+++..  
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~-~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT-PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH-HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecccc-chhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence            48999995 9999999999987776  5999998642 22222221 1         112455688899999999754  


Q ss_pred             CCh-hhhh-cc--c----HH---HHhcCCCCcEEEEcCC
Q 027408          102 LTE-KTRG-MF--D----KD---RIAKMKKGVLIVNNAR  129 (223)
Q Consensus       102 ~~~-~t~~-~i--~----~~---~~~~mk~ga~ivn~sr  129 (223)
                      ..+ +++. ++  |    ++   .+....|.++++.++.
T Consensus        80 ~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            222 1111 11  1    12   2233367889988865

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.39  E-value=0.00019  Score=53.72  Aligned_cols=98  Identities=16%  Similarity=0.185  Sum_probs=59.9

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCCh-hHHHhh-------CC--eecCCHHhhcccCCEEEEcC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDP-QLEKET-------GA--KFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~-~~~~~~-------g~--~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+...||+|||.|.+|..+|..+...|.  ++..+|.++... ..+.++       +.  .....-.+.+++||+|+++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            4677899999999999999999988776  799999864211 111111       11  11122245678999999976


Q ss_pred             CC--Ch-hhhh-cc--c----HH---HHhcCCCCcEEEEcCCC
Q 027408          101 PL--TE-KTRG-MF--D----KD---RIAKMKKGVLIVNNARG  130 (223)
Q Consensus       101 p~--~~-~t~~-~i--~----~~---~~~~mk~ga~ivn~srg  130 (223)
                      ..  .+ +++- ++  |    ++   .+....+++++++++..
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            42  22 1111 11  1    11   22233578889888753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.32  E-value=0.00037  Score=51.93  Aligned_cols=86  Identities=19%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-------CCHHhhc-----ccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~e~l-----~~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...++.++.+|. .|++.++++...+.++++|...+       ++..+.+     ..+|+|+.++.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G  107 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence            68899999999999999999999996 57788887777788888886432       2222222     34799998886


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEE
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      . +.    ..+..+..+++|..++
T Consensus       108 ~-~~----~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2         108 N-VK----VMRAALEACHKGWGVS  126 (176)
T ss_dssp             C-HH----HHHHHHHTBCTTTCEE
T ss_pred             C-HH----HHHHHHHhhcCCceeE
Confidence            2 22    2255667777765444

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.30  E-value=0.00078  Score=51.22  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEcc--cHHHHHHHHHHccCCCeEEEEcCCC-C-ChhHH-------HhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVK-M-DPQLE-------KETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~--G~iG~~iA~~l~~~G~~V~~~d~~~-~-~~~~~-------~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .|.|.+|++||=  .++..+++..+..+|+++.++.|.. . ..+..       ...+  +....++++.++++|+|...
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            488999999994  5899999999999999999999853 1 22211       1223  34568999999999999875


Q ss_pred             CCCCh----h---------h-hhcccHHHHhcCCCCcEEEEcC
Q 027408          100 TPLTE----K---------T-RGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       100 ~p~~~----~---------t-~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .--..    .         . ..+..+...+..++++++..+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            42111    0         0 1122344455678889888875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=0.00035  Score=47.00  Aligned_cols=66  Identities=12%  Similarity=0.057  Sum_probs=47.6

Q ss_pred             CCEEEEEcccHHHH-HHHHHHccCCCeEEEEcCCCC-ChhHHHhhCCeec-CCHHhhcccCCEEEEcCC
Q 027408           36 GKTVGTVGCGRIGK-LLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFE-EDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        36 g~~igIiG~G~iG~-~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~-~~l~e~l~~aDvVv~~~p  101 (223)
                      .++|=+||.|.+|. ++|+.|+..|+.|.++|+... ..+..++.|+... ..-.+-+.++|+||....
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsA   69 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPA   69 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTT
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecC
Confidence            36888999999998 679999999999999998752 1233456676542 223344678998877643

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.26  E-value=0.00017  Score=52.86  Aligned_cols=64  Identities=16%  Similarity=0.213  Sum_probs=43.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHH--hh-----C---CeecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEK--ET-----G---AKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~--~~-----g---~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .||+|||.|.+|..+|..+...|.  ++..+|.++...+ .+.  ..     +   +....+. +.+++||+|+++.-
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG   78 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG   78 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecc
Confidence            479999999999999998876665  7999998652211 111  11     1   1122344 45789999999864

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.25  E-value=0.00036  Score=51.56  Aligned_cols=68  Identities=21%  Similarity=0.309  Sum_probs=52.5

Q ss_pred             CCCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCCC-Ch-h---HHHhh--CCeecCCHHhhcccCCEEEEcCC
Q 027408           34 LEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM-DP-Q---LEKET--GAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~---~~~~~--g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      |.|++|++||=   +++.++++..+..+|+++.++.|... .. +   ..+..  .+....+++++++.+|+|....-
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~   79 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI   79 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence            78999999996   79999999999999999999987642 11 1   11222  23456799999999999887654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.23  E-value=0.00064  Score=50.80  Aligned_cols=82  Identities=17%  Similarity=0.136  Sum_probs=58.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-------CCHHhhc-----ccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~e~l-----~~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...+..++.+|. +|++.++++...+.++++|....       +..++..     ...|+++.+..
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G  107 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCC
Confidence            68999999999999999999999985 79999998877788888876432       1122222     24799988876


Q ss_pred             CChhhhhcccHHHHhcCCCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKG  121 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g  121 (223)
                      .. .    ..+..+..++++
T Consensus       108 ~~-~----~~~~a~~~~~~~  122 (176)
T d2jhfa2         108 RL-D----TMVTALSCCQEA  122 (176)
T ss_dssp             CH-H----HHHHHHHHBCTT
T ss_pred             ch-h----HHHHHHHHHhcC
Confidence            22 1    224455566664

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.22  E-value=0.00039  Score=49.48  Aligned_cols=85  Identities=18%  Similarity=0.169  Sum_probs=54.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----CCHHhh----cccCCEEEEcCCCChhhhh
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e~----l~~aDvVv~~~p~~~~t~~  108 (223)
                      |.+-|+|+|.+|+.+++.|++.  +|.+.+.++...+.....|+..+    ++.+-+    +.+|+.++++++....+  
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n--   76 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSET--   76 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhh--
Confidence            4688999999999999999754  56777776654455555565422    233322    46899999988854443  


Q ss_pred             cccHHHHhcCCCCcEEE
Q 027408          109 MFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~iv  125 (223)
                      +.-....+.+.|...++
T Consensus        77 ~~~~~~~r~~~~~~~ii   93 (129)
T d2fy8a1          77 IHCILGIRKIDESVRII   93 (129)
T ss_dssp             HHHHHHHHHHCSSSCEE
T ss_pred             HHHHHHHHHHCCCceEE
Confidence            33344455555554443

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=8e-05  Score=55.79  Aligned_cols=65  Identities=8%  Similarity=0.090  Sum_probs=43.5

Q ss_pred             CEEEEEcccHHHHHHHHHH--c---cC-CCeEEEEcCCCCChhHHHh---------hCCeecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVGCGRIGKLLLQRL--K---PF-NCNLLYHDRVKMDPQLEKE---------TGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l--~---~~-G~~V~~~d~~~~~~~~~~~---------~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      +||+|||.|.+|...+-..  +   .+ .-++..+|.++...+...+         ..+...++.++.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            5899999998887766432  1   12 3579999987532221111         112334678899999999999875

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.16  E-value=0.0014  Score=47.47  Aligned_cols=102  Identities=12%  Similarity=0.100  Sum_probs=70.4

Q ss_pred             CCCEEEEEcc----cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      .-++|+|||.    ++.|..+++.|+.+|++|+.++|...     .-.|...+.+++++-...|++++++|  ++...-+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~-----~i~G~~~~~sl~dlp~~iD~v~i~vp--~~~~~~~   90 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE-----EVLGRKCYPSVLDIPDKIEVVDLFVK--PKLTMEY   90 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS-----EETTEECBSSGGGCSSCCSEEEECSC--HHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc-----ccCCCcccccccccCccceEEEEEeC--HHHHHHH
Confidence            4689999995    68999999999999999999998642     23466777899998888999999999  4332223


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      -++..+ +....+++..+   ..+++ +.+.+++..+.
T Consensus        91 ~~e~~~-~g~k~v~~~~G---~~~ee-~~~~a~~~gi~  123 (139)
T d2d59a1          91 VEQAIK-KGAKVVWFQYN---TYNRE-ASKKADEAGLI  123 (139)
T ss_dssp             HHHHHH-HTCSEEEECTT---CCCHH-HHHHHHHTTCE
T ss_pred             HHHHHH-hCCCEEEEecc---ccCHH-HHHHHHHCCCE
Confidence            234333 34445665444   34444 44555554454

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.15  E-value=9.8e-05  Score=55.14  Aligned_cols=89  Identities=22%  Similarity=0.200  Sum_probs=63.3

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCH-Hhhc-----ccCCEEEEcCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL-DTML-----PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l-~e~l-----~~aDvVv~~~p  101 (223)
                      .|.+|.|+|. |.+|...++.++..|. +|++.++++...+.++++|...+     .++ +++.     ...|+|+-++.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            5789999995 9999999999998885 79999988766677777775321     122 2222     23788888776


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      . +.+   + +..+..++++..++.++
T Consensus       107 ~-~~~---~-~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         107 S-EKT---L-SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             C-HHH---H-TTGGGGEEEEEEEEECC
T ss_pred             c-chH---H-HhhhhhcccCCEEEEec
Confidence            2 222   1 34567888888888775

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.15  E-value=0.00035  Score=47.61  Aligned_cols=67  Identities=18%  Similarity=0.161  Sum_probs=47.7

Q ss_pred             CCCEEEEEcccHHHH-HHHHHHccCCCeEEEEcCCCC-ChhHHHhhCCeec-CCHHhhcccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGK-LLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFE-EDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~-~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~-~~l~e~l~~aDvVv~~~p  101 (223)
                      ..++|=+||.|.+|. ++|+.|+..|++|.++|.... ..+...+.|+... ..-.+.+++.|+||....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~A   76 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSA   76 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCC
Confidence            578899999999995 559999999999999998642 1233345576432 233445678898877643

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=97.15  E-value=0.00028  Score=52.14  Aligned_cols=63  Identities=17%  Similarity=0.255  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc---cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcC
Q 027408           35 EGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        35 ~g~~igIiG~---G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      .|.+|++||=   ++++++++..+..+|+++.+..|..-.++   ...+....++++.++++|+|....
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeeeE
Confidence            6899999994   78999999999999999999888642221   223455678999999999987654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.0003  Score=53.02  Aligned_cols=66  Identities=17%  Similarity=0.147  Sum_probs=44.4

Q ss_pred             CCEEEEEcccHHHHHHHH---HHc--cC-CCeEEEEcCCCCChhH--------HHhh----CCeecCCHHhhcccCCEEE
Q 027408           36 GKTVGTVGCGRIGKLLLQ---RLK--PF-NCNLLYHDRVKMDPQL--------EKET----GAKFEEDLDTMLPKCDIVV   97 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~---~l~--~~-G~~V~~~d~~~~~~~~--------~~~~----g~~~~~~l~e~l~~aDvVv   97 (223)
                      ++||+|||.|.+|...+-   .++  .+ +.++..+|.++...+.        ....    .+...++.++.+++||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            579999999999976432   232  23 4589999997532221        1111    1234578999999999999


Q ss_pred             EcCC
Q 027408           98 VNTP  101 (223)
Q Consensus        98 ~~~p  101 (223)
                      ++..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00029  Score=52.56  Aligned_cols=96  Identities=15%  Similarity=0.180  Sum_probs=58.0

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhh-------CC---eecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET-------GA---KFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~-------g~---~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.-.||+|||.|.+|..+|..+...|.  ++..+|++....+ .+.++       +.   ....+. +.+.+||+|+++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvit   94 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIIT   94 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEe
Confidence            4566799999999999999999987765  7999998642111 11111       11   112344 456899999987


Q ss_pred             CCC--Ch-hhhh-cc--c----HHHHh---cCCCCcEEEEcCC
Q 027408          100 TPL--TE-KTRG-MF--D----KDRIA---KMKKGVLIVNNAR  129 (223)
Q Consensus       100 ~p~--~~-~t~~-~i--~----~~~~~---~mk~ga~ivn~sr  129 (223)
                      ...  .+ +++. ++  |    ++..+   ...+++++++++.
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            642  22 1111 11  1    22222   2357888988876

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=3.8e-05  Score=57.81  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=57.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhcccH
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDK  112 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i~~  112 (223)
                      .+|||||+|.+|+..++.++...  ..+.+++..... +.....+.. ..++++++.  +.|+|++++|  +.++.-+..
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~l~~~~iD~V~I~tp--~~~H~~~~~   83 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-ELGSLDEVR-QISLEDALRSQEIDVAYICSE--SSSHEDYIR   83 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-CCCEETTEE-BCCHHHHHHCSSEEEEEECSC--GGGHHHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH-HHHHhhccC-cCCHHHHHhCCCcchhhhccc--ccccccccc
Confidence            47999999999999998887643  123333322111 111122233 348999985  5799999999  333333333


Q ss_pred             HHHhcCCCCc-EEEEcC-CCCccCHHHHHHHHHhCCcc
Q 027408          113 DRIAKMKKGV-LIVNNA-RGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       113 ~~~~~mk~ga-~ivn~s-rg~~vd~~al~~~L~~g~i~  148 (223)
                      ..++   .|. +++.-- .-.+-+.+.|.+..++....
T Consensus        84 ~al~---~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          84 QFLQ---AGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHHH---TTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccc---cchhhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            3443   343 333321 12234445566654444433

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.08  E-value=0.0012  Score=52.59  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +|+||++.|.| .+.||+++|+.|...|++|++.+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999 58899999999999999999999864

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.04  E-value=0.0011  Score=48.67  Aligned_cols=92  Identities=16%  Similarity=0.127  Sum_probs=49.4

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccC----CCeEEEEcCCCCChhH---HHhhCCeecCCHHhhcccCCEEEEcCCCChhhhh
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQL---EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~---~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      +||||||. |.+|+.+.+.|...    ..++..+..+....+.   ...........-.+.++++|+|++|+|....  .
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s--~   78 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYT--E   78 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHH--H
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHH--H
Confidence            58999995 99999999877532    2456555433211111   0000111111223456899999999992221  1


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      -+-.+. ..-...+++||.|.--
T Consensus        79 ~~~~~l-~~~g~~~~VIDlSsdf  100 (147)
T d1mb4a1          79 KVYPAL-RQAGWKGYWIDAASTL  100 (147)
T ss_dssp             HHHHHH-HHTTCCSEEEESSSTT
T ss_pred             HHhHHH-HHcCCceEEEeCCccc
Confidence            121222 2223346788887543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=0.0008  Score=48.21  Aligned_cols=84  Identities=17%  Similarity=0.120  Sum_probs=51.7

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHH
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~  114 (223)
                      ++|+|+|+ |+||+.+++.+...|+++. .+|++.                 .+.+..+|+|+--..  |+.   ..+-.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~-----------------~~~~~~~DVvIDFS~--p~~---~~~~l   58 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG-----------------VEELDSPDVVIDFSS--PEA---LPKTV   58 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE-----------------EEECSCCSEEEECSC--GGG---HHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc-----------------HHHhccCCEEEEecC--HHH---HHHHH
Confidence            58999996 9999999999998899865 445321                 223467898876554  222   11111


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHH
Q 027408          115 IAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (223)
Q Consensus       115 ~~~mk~ga~ivn~srg~~vd~~al~~~L  142 (223)
                      -...+.+.-+|-.+.|---+....++.+
T Consensus        59 ~~~~~~~~p~ViGTTG~~~~~~~~i~~~   86 (128)
T d1vm6a3          59 DLCKKYRAGLVLGTTALKEEHLQMLREL   86 (128)
T ss_dssp             HHHHHHTCEEEECCCSCCHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEcCCCCHHHHHHHHHH
Confidence            1223445667777777544444444443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.03  E-value=0.00021  Score=52.28  Aligned_cols=93  Identities=16%  Similarity=0.090  Sum_probs=57.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHh-------hC----CeecCCHHhhcccCCEEEEcCC-
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE-------TG----AKFEEDLDTMLPKCDIVVVNTP-  101 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~-------~g----~~~~~~l~e~l~~aDvVv~~~p-  101 (223)
                      +||+|||.|.+|..+|..+...|.  ++..+|.++...+ .+.+       ..    +....+. +.+++||+|+++.. 
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~   79 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence            689999999999999998876664  6999998652211 0100       11    1222344 67889999999864 


Q ss_pred             -CChhhh--hcc------cH---HHHhcCCCCcEEEEcCCC
Q 027408          102 -LTEKTR--GMF------DK---DRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       102 -~~~~t~--~~i------~~---~~~~~mk~ga~ivn~srg  130 (223)
                       ..+...  .++      -+   +.+....|.+++++++..
T Consensus        80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1ojua1          80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP  120 (142)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred             cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC
Confidence             222110  011      11   223444678899998763

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.03  E-value=0.0011  Score=47.57  Aligned_cols=63  Identities=14%  Similarity=0.326  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcc----cHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCC
Q 027408           34 LEGKTVGTVGC----GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        34 l~g~~igIiG~----G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ++=++|+|||.    |..|..+.+.|+..| .+|+.++|+..     .-.|...+.+++|+-...|++++++|
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~-----~i~G~~~y~sl~dlp~~vDlvvi~vp   73 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEE-----EVQGVKAYKSVKDIPDEIDLAIIVVP   73 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCS-----EETTEECBSSTTSCSSCCSEEEECSC
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcc-----ccCCeEeecchhhcCCCCceEEEecC
Confidence            56789999996    899999999998765 68999998642     13477778899999889999999999

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00068  Score=49.64  Aligned_cols=94  Identities=26%  Similarity=0.320  Sum_probs=55.3

Q ss_pred             CEEEEEcc-cHHHHHHHHHHc---cCCCeEEEEcCCCCChhHHHhh-CC------e--ecCCHHhhcccCCEEEEcCC--
Q 027408           37 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDPQLEKET-GA------K--FEEDLDTMLPKCDIVVVNTP--  101 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~---~~G~~V~~~d~~~~~~~~~~~~-g~------~--~~~~l~e~l~~aDvVv~~~p--  101 (223)
                      +||+|||. |.+|+.+|..+.   .+..++..+|..+.....+.++ ..      .  ..++..+.+++||+|+++.-  
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            58999995 999999998764   3456899999754322221121 11      0  11233456889999999863  


Q ss_pred             CChh-hh-hcc--c----H---HHHhcCCCCcEEEEcCCC
Q 027408          102 LTEK-TR-GMF--D----K---DRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       102 ~~~~-t~-~~i--~----~---~~~~~mk~ga~ivn~srg  130 (223)
                      ..|. ++ .++  |    +   +.+....|.++++.++..
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP  120 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP  120 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence            2221 11 111  1    1   223334578888888653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.00  E-value=0.0005  Score=52.73  Aligned_cols=94  Identities=16%  Similarity=0.163  Sum_probs=65.3

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeec-----CCHH----hhc--ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~----e~l--~~aDvVv~~~p~  102 (223)
                      .|.+|.|+|+|.+|...++.++..|. +|++.|+++...+.++++|...+     .++.    ++.  ..+|+++-++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~  104 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  104 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECccc
Confidence            58899999999999999999998888 68899998766777888876532     1222    222  247999988752


Q ss_pred             Chh--hh--------hcccHHHHhcCCCCcEEEEcC
Q 027408          103 TEK--TR--------GMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       103 ~~~--t~--------~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ...  ..        ...-+..+..++++..++.++
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2         105 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             cccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            110  00        011256667788888887776

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0012  Score=48.20  Aligned_cols=86  Identities=13%  Similarity=0.091  Sum_probs=54.2

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh-hH---HHhhCCeec----CCHH---h-hcccCCEEEEcCCCChh
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QL---EKETGAKFE----EDLD---T-MLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~---~~~~g~~~~----~~l~---e-~l~~aDvVv~~~p~~~~  105 (223)
                      .|-|+|+|.+|+.+++.|...|.+|++++..+... +.   ....++..+    .+.+   + -+.+||.|+++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            58899999999999999999999999998765211 11   112244321    2222   1 24679999999985444


Q ss_pred             hhhcccHHHHhcCCCCcEEE
Q 027408          106 TRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~iv  125 (223)
                      +  +.-....+.+.+...+|
T Consensus        85 n--~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          85 N--AFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             H--HHHHHHHHHHTSSSCEE
T ss_pred             H--HHHHHHHHHhCCCCceE
Confidence            3  32234445554554333

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0032  Score=45.91  Aligned_cols=107  Identities=17%  Similarity=0.226  Sum_probs=58.3

Q ss_pred             CEEEEEcc-cHHHHHHHHHHcc---CC-CeEEEEcCCCCCh-h-HHHhhCCeec-CCHHhhcccCCEEEEcCCCChhhhh
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKP---FN-CNLLYHDRVKMDP-Q-LEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTRG  108 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~---~G-~~V~~~d~~~~~~-~-~~~~~g~~~~-~~l~e~l~~aDvVv~~~p~~~~t~~  108 (223)
                      |+|||||. |.+|+.+.+.|..   |- .++..+..+.... . .......... ..-.+.++++|++++++|....  .
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s--~   79 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYT--N   79 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHH--H
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHH--H
Confidence            58999996 9999999986542   22 3566665433111 1 1111111111 1122346789999999993222  1


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCCcc-----------CHHHHHHHHHhCC
Q 027408          109 MFDKDRIAKMKKGVLIVNNARGAIM-----------DTQAVVDACSSGH  146 (223)
Q Consensus       109 ~i~~~~~~~mk~ga~ivn~srg~~v-----------d~~al~~~L~~g~  146 (223)
                      .+ ...+..-+.+.++|+.|..--.           +.+.|..++++|.
T Consensus        80 ~~-~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          80 EI-YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             HH-HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             Hh-hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence            11 2223333445678888864443           3445666666543

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0013  Score=48.64  Aligned_cols=94  Identities=19%  Similarity=0.329  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcc---cHHHHHHHHHHccCCC-eEEEEcCCCC-Chh----HHHhhC--CeecCCHHhhcccCCEEEEcCCC
Q 027408           34 LEGKTVGTVGC---GRIGKLLLQRLKPFNC-NLLYHDRVKM-DPQ----LEKETG--AKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        34 l~g~~igIiG~---G~iG~~iA~~l~~~G~-~V~~~d~~~~-~~~----~~~~~g--~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      |.|.+|++||=   |++.++++..+..+|. .+.++.|... ..+    ..+..+  +....+++++++++|+|....-.
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            78999999995   7799999999999975 4666666432 111    122333  34567999999999999875432


Q ss_pred             Chh----------hhhcccHHHHhcCCCCcEEEEc
Q 027408          103 TEK----------TRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       103 ~~~----------t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      .+.          ....++.+.++.+++++++..+
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHc  116 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  116 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECC
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecC
Confidence            111          1122345566666777766654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0012  Score=52.34  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=34.6

Q ss_pred             cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+|.||++.|.|. +.||+++|+.|...|++|++++|+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4699999999997 5699999999999999999999965

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00072  Score=50.44  Aligned_cols=91  Identities=20%  Similarity=0.196  Sum_probs=57.0

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHcc-CCCeEE-EEcCCCCCh---hH-----HHhhCCeecCCHHhhcccCCEEEEcCCCCh
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDP---QL-----EKETGAKFEEDLDTMLPKCDIVVVNTPLTE  104 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~---~~-----~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~  104 (223)
                      ..+|+|+|+ |+||+.+++.+.. -++++. ++++.....   +.     ....++....++++++..+|+|+--..  |
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~--p   81 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR--P   81 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC--H
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc--H
Confidence            357999996 9999999998865 477754 667643111   00     112344556788889999999987665  3


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCC
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      +...   +-.-...+.+.-+|-.+.|-
T Consensus        82 ~~~~---~~~~~a~~~~~~~ViGTTG~  105 (162)
T d1diha1          82 EGTL---NHLAFCRQHGKGMVIGTTGF  105 (162)
T ss_dssp             HHHH---HHHHHHHHTTCEEEECCCCC
T ss_pred             HHHH---HHHHHHHhccceeEEecCCC
Confidence            3211   11112234566777777774

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.83  E-value=0.0008  Score=50.44  Aligned_cols=66  Identities=20%  Similarity=0.222  Sum_probs=42.6

Q ss_pred             CEEEEEcccHHH--HHHHHHHcc---CC-CeEEEEcCCCCChhH----------HHhhCC----eecCCHHhhcccCCEE
Q 027408           37 KTVGTVGCGRIG--KLLLQRLKP---FN-CNLLYHDRVKMDPQL----------EKETGA----KFEEDLDTMLPKCDIV   96 (223)
Q Consensus        37 ~~igIiG~G~iG--~~iA~~l~~---~G-~~V~~~d~~~~~~~~----------~~~~g~----~~~~~l~e~l~~aDvV   96 (223)
                      +||.|||.|++|  ..++..++.   +. .++..+|.++.....          ....+.    ...++..+.+++||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            489999999766  444444443   22 479999986532111          111222    2446788889999999


Q ss_pred             EEcCCC
Q 027408           97 VVNTPL  102 (223)
Q Consensus        97 v~~~p~  102 (223)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999863

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.82  E-value=0.0016  Score=49.00  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec----CCHHhhc-----ccCCEEEEcCCC
Q 027408           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPL  102 (223)
Q Consensus        33 ~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e~l-----~~aDvVv~~~p~  102 (223)
                      .-.|.+|.|.| .|.+|....+.++..|++|++..+++...+..+++|...+    ...++..     ...|+|+-++. 
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg-  107 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG-  107 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST-
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC-
Confidence            34689999999 5999999999999999999999988877888888876432    1122222     24688887775 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                           +....+.+..|+++..++.++.
T Consensus       108 -----g~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         108 -----GRTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             -----TTTHHHHHHTEEEEEEEEECSC
T ss_pred             -----chhHHHHHHHhCCCceEEEeec
Confidence                 1234788889999988888864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.80  E-value=0.0014  Score=47.89  Aligned_cols=64  Identities=19%  Similarity=0.324  Sum_probs=42.9

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCCCChh---HHHhh---------CCee---cCCHHhhcccCCEEEE
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ---LEKET---------GAKF---EEDLDTMLPKCDIVVV   98 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~---~~~~~---------g~~~---~~~l~e~l~~aDvVv~   98 (223)
                      +||+|||. |.+|+.+|..+...|.  ++..+|+.+....   .+.++         ....   .++..+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            58999995 9999999999988774  7999998642111   11110         1111   1223457789999999


Q ss_pred             cC
Q 027408           99 NT  100 (223)
Q Consensus        99 ~~  100 (223)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            84

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.78  E-value=0.005  Score=45.48  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhhCCeecCC-------HHhhc-----ccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-------LDTML-----PKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~-------l~e~l-----~~aDvVv~~~p  101 (223)
                      .|.+|.|+|.|.+|...+..++..|. +|++.|+++...+.++++|...+-+       .++..     ...|+++.++.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G  107 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  107 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecC
Confidence            68899999999999999999988876 6999999887778888888643211       12222     24899988886

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=96.74  E-value=0.00099  Score=52.39  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=46.3

Q ss_pred             CCCEEEEEcccH----HHHHHHHHHccC--CCeEE-EEcCCCCC-hhHHHhhCC---eecCCHHhhcc--cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGR----IGKLLLQRLKPF--NCNLL-YHDRVKMD-PQLEKETGA---KFEEDLDTMLP--KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~----iG~~iA~~l~~~--G~~V~-~~d~~~~~-~~~~~~~g~---~~~~~l~e~l~--~aDvVv~~~p  101 (223)
                      .-.+|||||+|.    +++..+..++..  +++|. ++|++... .+..+++++   ..++++++++.  +.|+|++++|
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            346899999987    555555566543  56766 68886532 233455554   34679999985  5789999999


Q ss_pred             C
Q 027408          102 L  102 (223)
Q Consensus       102 ~  102 (223)
                      .
T Consensus        95 ~   95 (237)
T d2nvwa1          95 V   95 (237)
T ss_dssp             H
T ss_pred             C
Confidence            3

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.74  E-value=0.0014  Score=47.81  Aligned_cols=92  Identities=13%  Similarity=0.212  Sum_probs=54.0

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCC--eEEEEcCCCCChh---HHHhh----C----Ce-ecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ---LEKET----G----AK-FEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~---~~~~~----g----~~-~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .||+||| .|.+|+.+|..+...+.  ++..+|.......   .+.++    .    .. ...+. +.+++||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence            4899999 69999999999987665  7999996431111   11111    1    11 12344 44679999998854


Q ss_pred             --CChh-hhh-cc--c----H---HHHhcCCCCcEEEEcCC
Q 027408          102 --LTEK-TRG-MF--D----K---DRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       102 --~~~~-t~~-~i--~----~---~~~~~mk~ga~ivn~sr  129 (223)
                        ..+. ++. ++  |    +   +.++...|+++++.++.
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence              2221 111 11  1    1   23344557788888864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.69  E-value=0.0026  Score=50.46  Aligned_cols=85  Identities=14%  Similarity=0.095  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcc-c--HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           34 LEGKTVGTVGC-G--RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        34 l~g~~igIiG~-G--~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      |+||++.|.|. |  .||.++|+.|...|++|++.+++....+..+        .+.+....+.++..-+........++
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~--------~l~~~~~~~~~~~~d~~~~~~~~~~~   74 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVR--------PIAQELNSPYVYELDVSKEEHFKSLY   74 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHH--------HHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--------HHHhhCCceeEeeecccchhhHHHHH
Confidence            89999999996 4  5999999999999999999998753332222        23333444555544444333333333


Q ss_pred             cHHHHhcCCCCcEEEEc
Q 027408          111 DKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~  127 (223)
                       .+..+.+.+-.++||.
T Consensus        75 -~~~~~~~g~id~lV~n   90 (274)
T d2pd4a1          75 -NSVKKDLGSLDFIVHS   90 (274)
T ss_dssp             -HHHHHHTSCEEEEEEC
T ss_pred             -HHHHHHcCCCCeEEee
Confidence             3444444444444443

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.0058  Score=45.91  Aligned_cols=97  Identities=24%  Similarity=0.352  Sum_probs=61.4

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCC-CeEEEE-cCCCCChhHHH---h-hCC--eecCCHHhhcccCCEEEEcCCCChhhh
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFN-CNLLYH-DRVKMDPQLEK---E-TGA--KFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G-~~V~~~-d~~~~~~~~~~---~-~g~--~~~~~l~e~l~~aDvVv~~~p~~~~t~  107 (223)
                      .+|||+|. |-+|+.+.+.|..+- .++... .++........   . .+.  ....+.+++..++|+|++++|....  
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s--   79 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS--   79 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH--
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH--
Confidence            48999995 999999999998753 465544 33221111111   1 111  1124677777889999999994432  


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q 027408          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVD  140 (223)
Q Consensus       108 ~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~  140 (223)
                          .+..... .+..+||.|..--.+....++
T Consensus        80 ----~~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          80 ----YDLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             ----HHHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             ----HHHHHhh-ccceEEecCccccccchhhHH
Confidence                2333333 578999999877775555444

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.66  E-value=0.0012  Score=49.52  Aligned_cols=90  Identities=20%  Similarity=0.152  Sum_probs=67.0

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec------CCHHhhc-----ccCCEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~e~l-----~~aDvVv~~~p~  102 (223)
                      .|++|.|.|. |.+|...++.++..|++|++..+++...+..++.|...+      ...+.++     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            5899999998 779999999999999999999887655566667775321      1222222     34899999886 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~srg  130 (223)
                       .+    ...+.++.++++..++.++..
T Consensus       108 -~~----~~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         108 -GE----FLNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             -HH----HHHHHGGGEEEEEEEEECCCG
T ss_pred             -ch----hhhhhhhhccCCCeEEeecce
Confidence             22    226788999999999998653

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.65  E-value=0.0014  Score=48.92  Aligned_cols=90  Identities=14%  Similarity=0.114  Sum_probs=68.4

Q ss_pred             CCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc---------ccCCEEEEcCCCC
Q 027408           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---------PKCDIVVVNTPLT  103 (223)
Q Consensus        34 l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l---------~~aDvVv~~~p~~  103 (223)
                      ..|.+|.|-| .|.+|....+.++.+|++|++..++....+..+++|...+-+.++..         ...|+|+-++-  
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg--   99 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG--   99 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC--
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc--
Confidence            3577899999 59999999999999999999999887777888888876543334321         24677777764  


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                          +....+.++.++++..++.++.
T Consensus       100 ----g~~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2         100 ----GKQLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             ----THHHHHHHTTEEEEEEEEECCC
T ss_pred             ----HHHHHHHHHHhccCceEEEeec
Confidence                1123678889999999888864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.0012  Score=49.23  Aligned_cols=87  Identities=20%  Similarity=0.147  Sum_probs=55.9

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeec-----CCHHhhc------ccCCEEEEcCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e~l------~~aDvVv~~~p~  102 (223)
                      .|.+|.|.| .|.+|...++.++..|++|++.++++...+..+++|...+     .++.+-+      ...|+|+-++. 
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g-  106 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-  106 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc-
Confidence            488999995 5669999999999999999999988755566666665321     2222222      12466655554 


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEc
Q 027408          103 TEKTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                       .++    ....+..++++..++..
T Consensus       107 -~~~----~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2         107 -RDT----WERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             -GGG----HHHHHHTEEEEEEEEEC
T ss_pred             -HHH----HHHHHHHHhcCCeeeec
Confidence             111    14555666665555554

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0056  Score=46.05  Aligned_cols=96  Identities=13%  Similarity=0.116  Sum_probs=65.6

Q ss_pred             CCCCCEEEEEccc--HHHHHHHHHHccCCCeEEEEcCCCC-C-hh-------HHHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-D-PQ-------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~-------~~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .|.|.+|++||=|  ++..+++..+..+|+++.++.|..- . .+       .....|  +....++++.++++|+|...
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            5789999999954  7999999999999999999998531 1 11       112223  34567999999999999775


Q ss_pred             CCCC----hh----------hhhcccHHHHhcCCCCcEEEEcC
Q 027408          100 TPLT----EK----------TRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       100 ~p~~----~~----------t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .=..    ..          ....++.......++++++..+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            4311    00          01223444555677888888764

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.61  E-value=0.0013  Score=49.16  Aligned_cols=66  Identities=17%  Similarity=0.104  Sum_probs=42.7

Q ss_pred             CCEEEEEcccHHHHHHH--HHHc---cC-CCeEEEEcCCCCChhH----H----HhhC----CeecCCHHhhcccCCEEE
Q 027408           36 GKTVGTVGCGRIGKLLL--QRLK---PF-NCNLLYHDRVKMDPQL----E----KETG----AKFEEDLDTMLPKCDIVV   97 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA--~~l~---~~-G~~V~~~d~~~~~~~~----~----~~~g----~~~~~~l~e~l~~aDvVv   97 (223)
                      ..||+|||.|.+|...+  ..++   .+ +-++..+|..+...+.    .    ...+    +....+..|.+++||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            35799999998876533  3332   22 2379999987532221    1    1112    234568899999999999


Q ss_pred             EcCC
Q 027408           98 VNTP  101 (223)
Q Consensus        98 ~~~p  101 (223)
                      ++.-
T Consensus        83 itag   86 (167)
T d1u8xx1          83 AHIR   86 (167)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9975

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.58  E-value=0.0021  Score=48.34  Aligned_cols=98  Identities=12%  Similarity=0.124  Sum_probs=59.1

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccC-CCeEEEE-cCC--CCChh-HHHh---h-C-----CeecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRV--KMDPQ-LEKE---T-G-----AKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~-G~~V~~~-d~~--~~~~~-~~~~---~-g-----~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      .+|+|+| .|.+|+.+.+.|... .+++... .++  ....+ ....   + +     .....+.+....++|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            4899999 599999999999886 5666543 221  11111 1110   0 1     1122344556678999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHH
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  139 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~  139 (223)
                      .     +.-.+..-...+.+..+||.|..--.+....+
T Consensus        82 ~-----~~s~~~~~~~~~~~~~vIDlSadfRl~~~~~~  114 (179)
T d2g17a1          82 H-----EVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFY  114 (179)
T ss_dssp             H-----HHHHHHHHHHHHTTCEEEECSSTTSSSCHHHH
T ss_pred             c-----hhHHHHhhhhhhcCceeecccccccccccccc
Confidence            2     22112223334578899999976665544443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.54  E-value=0.0041  Score=49.96  Aligned_cols=54  Identities=15%  Similarity=0.127  Sum_probs=41.3

Q ss_pred             HHHcCCCccCcc-cCcccCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           16 QVISGEWNVAGV-AYRAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        16 ~~~~~~w~~~~~-~~~~~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+++..|.+..- -.+..+|+||++.|.| .|.||+++|+.|...|++|++.+|+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_           4 ALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             HHHHHHSCCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhhhhhcCcccccCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            344555653221 1123589999999999 59999999999999999999999864

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0036  Score=47.01  Aligned_cols=90  Identities=14%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHh-----hc--ccCCEEEEcCCCChh
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-----ML--PKCDIVVVNTPLTEK  105 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-----~l--~~aDvVv~~~p~~~~  105 (223)
                      ..+.+|.|.|. |.+|....+.++.+|++|++..+++...+..+++|...+-+.++     .+  ...|.++-++.  ..
T Consensus        30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg--g~  107 (177)
T d1o89a2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG--DK  107 (177)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC--HH
T ss_pred             CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc--hH
Confidence            34557888875 99999999999999999999998876667777777654322222     11  22477776664  11


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                          ...+.++.++++..+|+++.
T Consensus       108 ----~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         108 ----VLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             ----HHHHHHHTEEEEEEEEECCC
T ss_pred             ----HHHHHHHHhccccceEeecc
Confidence                23678888999999998864

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.47  E-value=0.0016  Score=50.65  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=31.9

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ||||.|||.|.-|-..|..|+..|++|.+++.+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6999999999999999999999999999999754

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0019  Score=51.22  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=34.9

Q ss_pred             cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ..|.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4699999999996 8999999999999999999999864

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.46  E-value=0.0021  Score=51.18  Aligned_cols=37  Identities=24%  Similarity=0.296  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999996 6799999999999999999999864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.43  E-value=0.002  Score=45.04  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=31.8

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      -++|.|||.|.+|-.+|..++.+|.+|.++.+..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            4799999999999999999999999999999865

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.43  E-value=0.0051  Score=48.51  Aligned_cols=45  Identities=18%  Similarity=0.170  Sum_probs=37.5

Q ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh
Q 027408           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE   77 (223)
Q Consensus        33 ~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   77 (223)
                      .|.||++.|.| .+.||+++|+.|...|++|++.+++....+..+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~   47 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA   47 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            38999999999 5899999999999999999999997644444433

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.43  E-value=0.01  Score=44.64  Aligned_cols=93  Identities=14%  Similarity=0.147  Sum_probs=54.6

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccC-CCeEEEE-cCCCCChhHHHh---h-C--C-eecCCHHhhcccCCEEEEcCCCChh
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQLEKE---T-G--A-KFEEDLDTMLPKCDIVVVNTPLTEK  105 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~---~-g--~-~~~~~l~e~l~~aDvVv~~~p~~~~  105 (223)
                      ..||||+|. |-.|+.+.+.|... .+++... +++.........   . .  . ......++...++|++++++|..  
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~--   82 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHG--   82 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSS--
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccc--
Confidence            447999995 99999999999876 4565544 333211111111   1 1  1 11223345567899999999933  


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCCccC
Q 027408          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMD  134 (223)
Q Consensus       106 t~~~i~~~~~~~mk~ga~ivn~srg~~vd  134 (223)
                          +..+....+.+...+|+.+.+.-..
T Consensus        83 ----~s~~~~~~l~~~~~~v~~~~~~~~~  107 (183)
T d2cvoa1          83 ----TTQEIIKGLPQELKIVDLSADFRLR  107 (183)
T ss_dssp             ----HHHHHHHTSCSSCEEEECSSTTTCS
T ss_pred             ----hHHHHHHHHHhcCcccccchhhhcc
Confidence                2344455565555666665555443

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.43  E-value=0.0014  Score=47.70  Aligned_cols=90  Identities=12%  Similarity=0.102  Sum_probs=51.2

Q ss_pred             CEEEEEcc-cHHHHHHHHHHcc--C-CCeEEEEcCCCCChhHHHhhC--CeecCCHHhhcccCCEEEEcCCCChhhhhcc
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKP--F-NCNLLYHDRVKMDPQLEKETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~--~-G~~V~~~d~~~~~~~~~~~~g--~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i  110 (223)
                      ++|||||. |.+|+.+.+.|..  + ..++..+..+....+.....+  ........+.+.++|++++++|.....    
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~----   78 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSR----   78 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHH----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhh----
Confidence            68999996 9999999999963  3 345665433221111111000  111111224467899999999922111    


Q ss_pred             cHHHHhcCCCCcEEEEcCCCC
Q 027408          111 DKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       111 ~~~~~~~mk~ga~ivn~srg~  131 (223)
                       +-.-...+.|..+||.|.--
T Consensus        79 -~~~~~~~~~g~~VID~Ss~f   98 (144)
T d2hjsa1          79 -AHAERARAAGCSVIDLSGAL   98 (144)
T ss_dssp             -HHHHHHHHTTCEEEETTCTT
T ss_pred             -hhccccccCCceEEeechhh
Confidence             11222345789999987543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.40  E-value=0.0026  Score=50.18  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=33.8

Q ss_pred             cCCCCCEEEEEccc---HHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~G---~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+|+||++.|.|.+   .||+++|+.|...|++|++.+++.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            36899999999974   599999999999999999888864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.002  Score=45.34  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=31.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +++.|||.|.||-.+|..|..+|++|.++.+.+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            689999999999999999999999999998765

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0049  Score=48.21  Aligned_cols=40  Identities=15%  Similarity=0.129  Sum_probs=35.6

Q ss_pred             cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCC
Q 027408           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD   71 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~   71 (223)
                      +.|+||++.|.|. +.||+++|+.|...|++|++.+|+...
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            3699999999996 779999999999999999999987643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.37  E-value=0.0022  Score=44.63  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      +++.|||.|.+|..+|..+..+|.+|.++.+...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            7899999999999999999999999999987653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.37  E-value=0.0013  Score=49.07  Aligned_cols=36  Identities=8%  Similarity=0.142  Sum_probs=32.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKM   70 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~~~   70 (223)
                      .++||+|||.|..|-..|..|+..|++ |.+++++..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            578999999999999999999999995 999998764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.36  E-value=0.0038  Score=49.73  Aligned_cols=41  Identities=22%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             CcccCCCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           29 YRAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        29 ~~~~~l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ....+|+||++.|.| .+.||+++|+.|...|++|++.+++.
T Consensus        11 ~~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          11 PQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            345679999999999 58999999999999999999988754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0082  Score=47.47  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=34.7

Q ss_pred             cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ..|+||++.|.|. +.||.++|+.|...|++|++++|+.
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4599999999996 7999999999999999999999864

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.26  E-value=0.0068  Score=48.04  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            379999999996 6799999999999999999999864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0047  Score=48.55  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            589999999996 7899999999999999999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0028  Score=44.09  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=31.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ++|.|||.|.+|-.+|..++.+|.+|.++++.+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            689999999999999999999999999999865

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.20  E-value=0.0042  Score=43.17  Aligned_cols=36  Identities=17%  Similarity=0.033  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ..+++|.|||.|.+|-.+|..|+.+|.+|..+.+.+
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            468999999999999999999999999999999865

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.19  E-value=0.0048  Score=48.95  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +|.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999997 6799999999999999999999864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0055  Score=52.36  Aligned_cols=85  Identities=19%  Similarity=0.205  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChh-------------------HH----Hhh--C--Cee---
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-------------------LE----KET--G--AKF---   82 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-------------------~~----~~~--g--~~~---   82 (223)
                      |++++|.|||+|.+|..+++.|...|. ++.++|...-...                   .+    ...  +  +..   
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            678999999999999999999998898 5889987532111                   00    011  1  111   


Q ss_pred             --cCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCC
Q 027408           83 --EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK  119 (223)
Q Consensus        83 --~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk  119 (223)
                        .+..+++++++|+|+.++- +..++..++...+...+
T Consensus       115 ~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         115 KIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             cccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence              1223567889999987775 56677788777765544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0045  Score=49.25  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|.||++.|.|. +.||+++|+.|.+.|++|++.+|+.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            499999999997 6699999999999999999999964

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.14  E-value=0.006  Score=42.02  Aligned_cols=65  Identities=18%  Similarity=0.190  Sum_probs=48.9

Q ss_pred             CCCEEEEEcc----------cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCC
Q 027408           35 EGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p  101 (223)
                      ..++|||+|+          ..-.-.+.+.|...|.+|.+|||.-...+.  ..+.....++++++..+|+|++...
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~--~~~~~~~~~l~~~~~~sDiII~~~~   88 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES--EDQSVLVNDLENFKKQANIIVTNRY   88 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT--TCCSEECCCHHHHHHHCSEEECSSC
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh--ccCCEEEeCHHHHHhhCCEEEEcCC
Confidence            3468999994          455778899999999999999997533221  2345566799999999998775543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.13  E-value=0.0039  Score=43.80  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=32.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .++++.|||.|.+|-.+|..|+..|.+|.++++.+
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            46899999999999999999999999999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.13  E-value=0.0024  Score=45.01  Aligned_cols=33  Identities=12%  Similarity=-0.034  Sum_probs=30.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +++.|||.|.||..+|..++.+|.+|.++.+++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            579999999999999999999999999888753

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.12  E-value=0.0053  Score=48.43  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=34.3

Q ss_pred             cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ..|.+|.+.|.|. +.||+++|+.|...|++|++++|+.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3589999999996 7899999999999999999999864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0036  Score=44.09  Aligned_cols=33  Identities=18%  Similarity=0.100  Sum_probs=31.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +++.|||.|.||-.+|..++.+|.+|.++.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            789999999999999999999999999999875

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.10  E-value=0.006  Score=48.35  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999996 5799999999999999999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.09  E-value=0.0037  Score=43.68  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=31.2

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+++.|||.|.||-.+|..++.+|++|.++.+..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            3789999999999999999999999999888764

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.08  E-value=0.0043  Score=49.27  Aligned_cols=38  Identities=24%  Similarity=0.361  Sum_probs=34.5

Q ss_pred             cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ..|.||++.|.|. +.||+++|+.|...|++|++++|+.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3689999999996 6799999999999999999999864

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0037  Score=49.59  Aligned_cols=37  Identities=22%  Similarity=0.281  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999996 7899999999999999999999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.0043  Score=49.03  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999996 6799999999999999999999864

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.04  E-value=0.0059  Score=48.30  Aligned_cols=39  Identities=21%  Similarity=0.196  Sum_probs=35.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD   71 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~   71 (223)
                      +|.||++.|.|. +.||+++|+.|...|++|++.+++...
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            689999999996 569999999999999999999997643

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.03  E-value=0.0025  Score=46.82  Aligned_cols=91  Identities=23%  Similarity=0.313  Sum_probs=54.2

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCC---eEEEEcCCCCChhHHH--hhCCeecCCHHhhcccCCEEEEcCCCChhhhhc
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEK--ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~--~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      |-+|||||. |-+|+.+.+.|....+   ++.++..+....+...  ..........++...++|++++++|..     .
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~-----~   75 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSS-----T   75 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHH-----H
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCcc-----c
Confidence            458999997 9999999999977643   3444442211111000  001112233445667899999999922     1


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 027408          110 FDKDRIAKMKKGVLIVNNARGA  131 (223)
Q Consensus       110 i~~~~~~~mk~ga~ivn~srg~  131 (223)
                      -.+...+..+++..+||.|.--
T Consensus        76 s~~~~~~~~~~~~~VIDlSsdf   97 (154)
T d2gz1a1          76 SAKYAPYAVKAGVVVVDNTSYF   97 (154)
T ss_dssp             HHHHHHHHHHTTCEEEECSSTT
T ss_pred             hhhHHhhhccccceehhcChhh
Confidence            1123334456799999998544

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.03  E-value=0.0049  Score=49.01  Aligned_cols=38  Identities=32%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3699999999995 8899999999999999999999864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.005  Score=46.37  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=34.9

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .....|+|+|||.|..|-+.|..|+..|++|.+|++.+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            35678999999999999999999999999999999865

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.01  E-value=0.0048  Score=43.34  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      -.+++|.|||.|.+|-.+|..++..|.+|.++++.+
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            357899999999999999999999999999998764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.0073  Score=47.37  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +|.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999996 6899999999999999999999864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0077  Score=47.15  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=33.7

Q ss_pred             CCCCEEEEEccc---HHHHHHHHHHccCCCeEEEEcCCCCC
Q 027408           34 LEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVKMD   71 (223)
Q Consensus        34 l~g~~igIiG~G---~iG~~iA~~l~~~G~~V~~~d~~~~~   71 (223)
                      |.||++.|.|.+   .||+++|+.|...|++|++.+++...
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~   43 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL   43 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            899999999976   49999999999999999999987543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.00  E-value=0.0039  Score=48.93  Aligned_cols=37  Identities=30%  Similarity=0.397  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999997 5699999999999999999999864

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.006  Score=47.90  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++++|+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999995 7899999999999999999999864

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.99  E-value=0.014  Score=43.66  Aligned_cols=89  Identities=19%  Similarity=0.100  Sum_probs=60.7

Q ss_pred             CCCEEEEE--cccHHHHHHHHHHccCCCeEEEEcCCCCChh----HHHhhCCeecCCH------------Hhhc----cc
Q 027408           35 EGKTVGTV--GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ----LEKETGAKFEEDL------------DTML----PK   92 (223)
Q Consensus        35 ~g~~igIi--G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~----~~~~~g~~~~~~l------------~e~l----~~   92 (223)
                      .|.++.|+  |.|.+|....+.++.+|++|++.-++....+    ..+++|...+-+.            .++.    ..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            47888888  6799999999999999999988766543322    2345665432111            1111    24


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .|+|+-++.  ..    .....+..|+++..+|.++.
T Consensus       108 vdvv~D~vg--~~----~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         108 AKLALNCVG--GK----SSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             EEEEEESSC--HH----HHHHHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCC--cc----hhhhhhhhhcCCcEEEEECC
Confidence            788888875  11    12567899999999998863

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.96  E-value=0.0036  Score=45.53  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=31.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~   69 (223)
                      .||+|.|||.|.+|-.+|..|+..+  .+|+++++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999999999999999998876  5789998765

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.95  E-value=0.0062  Score=47.96  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999996 7799999999999999999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.90  E-value=0.0028  Score=44.58  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=31.7

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+++.|||.|.||-.+|..+..+|++|.++.+.+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4789999999999999999999999999998865

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.89  E-value=0.023  Score=44.11  Aligned_cols=154  Identities=17%  Similarity=0.181  Sum_probs=98.5

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCC---Ch------hH----HHhhC-CeecCCHHhhcccCCE
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM---DP------QL----EKETG-AKFEEDLDTMLPKCDI   95 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~---~~------~~----~~~~g-~~~~~~l~e~l~~aDv   95 (223)
                      +..|...+|.|+|.|.-|..+|+.+...+. +++.+|+...   ..      +.    .+... .....++.+++..+++
T Consensus        21 g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~  100 (222)
T d1vl6a1          21 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  100 (222)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcce
Confidence            457999999999999999999999987776 5999998621   10      00    11111 1224578899999998


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCeEEc
Q 027408           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT  175 (223)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv~~t  175 (223)
                      +....     +.+++.++.+..|.+..+|.=.|....--+..  .+-..|+...+.     ..|..   | -+..|+++=
T Consensus       101 ~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~a~~~G~ai~At-----Gsp~~---p-~Q~NN~yiF  164 (222)
T d1vl6a1         101 FIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--LAREAGAFIVAT-----GRSDH---P-NQVNNLLAF  164 (222)
T ss_dssp             EEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--HHHHTTCSEEEE-----SCTTS---S-SBCCGGGTH
T ss_pred             ecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--hheeccceEEec-----CCCCC---C-ccCcceeec
Confidence            76665     36778889999999999999999877654443  334567655332     22322   1 244566666


Q ss_pred             cCCCC-----CcHHHHHHHHHHHHHHHHHHH
Q 027408          176 PHVSG-----TTIDAQLRYAAGVKDMLDRYF  201 (223)
Q Consensus       176 PH~a~-----~t~~~~~~~~~~~~~~i~~~~  201 (223)
                      |=++-     .++ ..+.|...+.+.|.++.
T Consensus       165 PGiglGal~~~ar-itd~m~~aAA~alA~~~  194 (222)
T d1vl6a1         165 PGIMKGAVEKRSK-ITKNMLLSAVEAIARSC  194 (222)
T ss_dssp             HHHHHHHHHHCSC-CCHHHHHHHHHHHHHTS
T ss_pred             chHHHHHHHhccc-cchHHHHHHHHHHHhcC
Confidence            64331     111 23445555566666654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.86  E-value=0.014  Score=45.83  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            589999999996 6799999999999999999999865

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.01  Score=46.52  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999996 6799999999999999999999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.78  E-value=0.04  Score=43.22  Aligned_cols=39  Identities=26%  Similarity=0.104  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD   71 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~   71 (223)
                      +|.||++.|.|. +.||.++|+.|...|++|++..++...
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~   41 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN   41 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            589999999997 579999999999999998777665433

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.78  E-value=0.0055  Score=46.94  Aligned_cols=35  Identities=23%  Similarity=0.111  Sum_probs=31.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +-++|.|||.|-.|-+.|..|+..|.+|.++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45689999999999999999999999999999753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.71  E-value=0.0075  Score=42.91  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=32.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+++|.|||.|.+|-.+|..++..|.+|.++++.+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            47899999999999999999999999999999865

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.70  E-value=0.023  Score=43.17  Aligned_cols=100  Identities=17%  Similarity=0.319  Sum_probs=73.3

Q ss_pred             HHHHHHccCCCeEEEEcCCC----CChhHHHhhCCeecCCHHhhcccCCEEEEc-CCCChhhhhcccHHHHhcCCCCcEE
Q 027408           50 LLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTMLPKCDIVVVN-TPLTEKTRGMFDKDRIAKMKKGVLI  124 (223)
Q Consensus        50 ~iA~~l~~~G~~V~~~d~~~----~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~-~p~~~~t~~~i~~~~~~~mk~ga~i  124 (223)
                      ..++.|.+.|++|++=.-..    -+.+.-.+.|+...++.++++.++|+|+.. .|...+    ...+.++.||+|+++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            46778888899998764321    234455667888888889999999988754 453222    234567899999999


Q ss_pred             EEcCCCCccCHHHHHHHHHhCCccEEEeeCC
Q 027408          125 VNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (223)
Q Consensus       125 vn~srg~~vd~~al~~~L~~g~i~~a~lDv~  155 (223)
                      |..--  .....++.++|.+.++...++|..
T Consensus        97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          97 MCHLG--ALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             EEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             EEecc--cccchhHHHHHHhcCceEEeeecc
Confidence            88754  456678999999999998888854

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0094  Score=45.99  Aligned_cols=69  Identities=17%  Similarity=0.212  Sum_probs=48.4

Q ss_pred             CCCCEEEEEc-ccHHHHHHHHHHccCCC--eEEEEcCCCCChh--HHHhh-----CCeecCCHHhhcccCCEEEEcCCC
Q 027408           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ--LEKET-----GAKFEEDLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        34 l~g~~igIiG-~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~--~~~~~-----g~~~~~~l~e~l~~aDvVv~~~p~  102 (223)
                      ..+++|.|.| .|.+|+.+++.|...|.  +|++++|++....  .....     ++...+++.+.++.+|+++.++..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            5788999999 59999999999977774  7999998653222  11111     111234566677899999887754

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=95.66  E-value=0.008  Score=48.02  Aligned_cols=37  Identities=22%  Similarity=0.369  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999996 8999999999999999999999864

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.64  E-value=0.011  Score=47.12  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999996 7899999999999999999999864

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=95.63  E-value=0.03  Score=41.71  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHcc---CCC----eEEEEcCCCCChh---HHHh---h------CCeecCCHHhhcccCCE
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKP---FNC----NLLYHDRVKMDPQ---LEKE---T------GAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~---~G~----~V~~~d~~~~~~~---~~~~---~------g~~~~~~l~e~l~~aDv   95 (223)
                      -.+|.|+|. |.||..++..|..   ||.    .+..+|.......   ...+   .      .+...++..+.++++|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            448999996 9999999998864   453    4667776442111   1111   1      12334788899999999


Q ss_pred             EEEcCCCC--hh---------hhhcc---cHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q 027408           96 VVVNTPLT--EK---------TRGMF---DKDRIAKMKKGVLIVNNARGAIMDTQAVVD  140 (223)
Q Consensus        96 Vv~~~p~~--~~---------t~~~i---~~~~~~~mk~ga~ivn~srg~~vd~~al~~  140 (223)
                      |++.....  |.         +..++   .+..-+..+++++++-++.  .+|.-+++.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence            99986321  10         11111   1222233466787777764  577777653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.58  E-value=0.007  Score=42.28  Aligned_cols=35  Identities=23%  Similarity=0.175  Sum_probs=32.2

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      ++++.|||.|.+|-.+|..|+.+|.+|.++++.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            57899999999999999999999999999998653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.57  E-value=0.0068  Score=42.84  Aligned_cols=63  Identities=21%  Similarity=0.284  Sum_probs=40.5

Q ss_pred             EEEEEcccHHHHHHHHHHc-cCCCeEE-EEcCCCCChhHHHhhCCe--ecCCHHhhcc-cCCEEEEcCC
Q 027408           38 TVGTVGCGRIGKLLLQRLK-PFNCNLL-YHDRVKMDPQLEKETGAK--FEEDLDTMLP-KCDIVVVNTP  101 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~-~~G~~V~-~~d~~~~~~~~~~~~g~~--~~~~l~e~l~-~aDvVv~~~p  101 (223)
                      +|.|+|+|.+|+++++.+. ..++++. ++|..+.... ..-.|+.  ..+.++++.+ ..++.++++|
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G-~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG-RPVRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT-CEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC-CEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            7999999999999999775 4577855 6676542211 1112333  2345666553 4677778887

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.56  E-value=0.0086  Score=43.72  Aligned_cols=64  Identities=16%  Similarity=0.132  Sum_probs=43.2

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCCCChhHHHh------h-------CCeecCCHHhhcccCCE
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDPQLEKE------T-------GAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~~------~-------g~~~~~~l~e~l~~aDv   95 (223)
                      .||.|||. |.+|..+|..|...+.       .+..+|.... .+.++.      .       .+....+..+.++++|+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv   82 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM-MGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV   82 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc-hhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence            38999995 9999999998864322       4778886542 211111      1       12234678899999999


Q ss_pred             EEEcCC
Q 027408           96 VVVNTP  101 (223)
Q Consensus        96 Vv~~~p  101 (223)
                      |+++..
T Consensus        83 VVitag   88 (154)
T d5mdha1          83 AILVGS   88 (154)
T ss_dssp             EEECCS
T ss_pred             EEEecc
Confidence            999863

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.56  E-value=0.0062  Score=43.00  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=31.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+++.|||.|.||-.+|..++.+|.+|.++.+.+
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4789999999999999999999999999998765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.013  Score=46.02  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47999999996 7799999999999999999999864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.019  Score=46.31  Aligned_cols=88  Identities=18%  Similarity=0.308  Sum_probs=54.6

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhc---ccCCEEEEcCCCCh--hh
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---PKCDIVVVNTPLTE--KT  106 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l---~~aDvVv~~~p~~~--~t  106 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+....+...       ..+..-+   ....++.+.+-.+.  +.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~-------~el~~~~~~~~~~~~~~~~~Dvs~~~~v   81 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAA-------DELQANLPPTKQARVIPIQCNIRNEEEV   81 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-------HHHHHTSCTTCCCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-------HHHHhhhccccCceEEEEeccCCCHHHH
Confidence            599999999996 77999999999999999999999642211110       1121111   23456655554332  23


Q ss_pred             hhcccHHHHhcCCCCcEEEEcC
Q 027408          107 RGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      ..++ ++..+.+.+--++||.+
T Consensus        82 ~~~~-~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          82 NNLV-KSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             HHHH-HHHHHHHSCCCEEEECC
T ss_pred             HHHH-HHHHHHhCCeEEEEeec
Confidence            3333 34445555555677765

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.54  E-value=0.019  Score=44.51  Aligned_cols=64  Identities=25%  Similarity=0.408  Sum_probs=46.7

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCee-----cCCHH---hhcccCCEEEEcC
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-----EEDLD---TMLPKCDIVVVNT  100 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-----~~~l~---e~l~~aDvVv~~~  100 (223)
                      |+||++.|.|. +.||+++|+.|...|++|++.+|+.   +..++.+...     .+..+   +-+.+.|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~---~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE---ELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH---HHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999996 7799999999999999999999864   3333333221     12333   3345789988765

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.53  E-value=0.008  Score=47.47  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999996 8999999999999999999999864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.53  E-value=0.0065  Score=41.95  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=31.5

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+++.|||.|.+|-.+|..++.+|.+|.++.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            3789999999999999999999999999998864

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.53  E-value=0.013  Score=42.75  Aligned_cols=99  Identities=18%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCC-------eEEEEcCCCCChhHHHh-------------hCCeecCCHHhhcccCCE
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDPQLEKE-------------TGAKFEEDLDTMLPKCDI   95 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~~-------------~g~~~~~~l~e~l~~aDv   95 (223)
                      .||.|+|. |.+|+.+|..+...+.       .+..++.... .+..+.             .++...++..+.+++||+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA-MKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccc-hhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            48999996 9999999999875432       1233443221 111110             012234677889999999


Q ss_pred             EEEcCCC--Chh-hh-hcc----------cHHHHhcCCCCcEEEEcCCCCccCHHHH
Q 027408           96 VVVNTPL--TEK-TR-GMF----------DKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (223)
Q Consensus        96 Vv~~~p~--~~~-t~-~~i----------~~~~~~~mk~ga~ivn~srg~~vd~~al  138 (223)
                      |+++.-.  .|. ++ .++          ..+..+..+++++++.++.  .+|.-..
T Consensus        84 ViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             EEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            9998632  221 11 111          1222333456888888764  4665443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.52  E-value=0.0084  Score=46.33  Aligned_cols=35  Identities=14%  Similarity=0.107  Sum_probs=32.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +.+||.|||.|..|-.+|..|+..|.+|.++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            56799999999999999999999999999999854

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.02  Score=44.81  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|++
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            389999999885 8999999999999999999999874

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.45  E-value=0.01  Score=46.79  Aligned_cols=68  Identities=24%  Similarity=0.221  Sum_probs=46.9

Q ss_pred             CCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChh--H------HHhhCCee-------cCCHHhhcccCCEEEEc
Q 027408           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--L------EKETGAKF-------EEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        36 g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~--~------~~~~g~~~-------~~~l~e~l~~aDvVv~~   99 (223)
                      -+||.|+| .|.||+.+++.|...|++|++.+|+.....  .      ....+++.       ...+.+.+..++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            35799999 599999999999999999999998653221  1      11223321       12344667888988887


Q ss_pred             CCCC
Q 027408          100 TPLT  103 (223)
Q Consensus       100 ~p~~  103 (223)
                      .+..
T Consensus        83 ~~~~   86 (312)
T d1qyda_          83 LAGG   86 (312)
T ss_dssp             CCCS
T ss_pred             hhhc
Confidence            7643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.42  E-value=0.015  Score=45.29  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=31.4

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      -|||.|+|. |.||+.+++.|...|++|++++|+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            478999995 99999999999999999999998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.42  E-value=0.0059  Score=48.22  Aligned_cols=35  Identities=20%  Similarity=0.116  Sum_probs=32.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .-|+|.|||.|..|-+.|..|+..|++|.+++.+.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999999754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.41  E-value=0.011  Score=46.66  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=27.6

Q ss_pred             CEEE-EEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVG-TVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~ig-IiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |||+ |.|. +.||+++|+.|...|++|++.+|+.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4664 4575 6799999999999999999999864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.41  E-value=0.011  Score=48.03  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +|.||++.|-|. +.||+++|+.|...|++|++.|++.
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            689999999996 7899999999999999999998864

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.39  E-value=0.061  Score=38.27  Aligned_cols=77  Identities=17%  Similarity=0.203  Sum_probs=45.7

Q ss_pred             EEEEEc-ccHHHHHHHHHHc-cCCCeEE-EEcCCCCChhHHHhhCCeecCCHHhh-cccCCEEEEcCCCChhhhhcccHH
Q 027408           38 TVGTVG-CGRIGKLLLQRLK-PFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        38 ~igIiG-~G~iG~~iA~~l~-~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~-l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      ||+|+| .|+||+.+++.+. ..++++. .+|+...               +..+ ...+|+|+--..  |+..   .+-
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~---------------~~~~~~~~~DvvIDFS~--p~~~---~~~   60 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP---------------LSLLTDGNTEVVIDFTH--PDVV---MGN   60 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC---------------THHHHTTTCSEEEECCC--TTTH---HHH
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---------------hhhhccccCCEEEEccc--HHHH---HHH
Confidence            699999 5999999999875 4578754 6665321               1111 246898886554  2221   111


Q ss_pred             HHhcCCCCcEEEEcCCCCccC
Q 027408          114 RIAKMKKGVLIVNNARGAIMD  134 (223)
Q Consensus       114 ~~~~mk~ga~ivn~srg~~vd  134 (223)
                      .-..++.+.-+|-.+.|---+
T Consensus        61 ~~~~~~~~~~~ViGTTG~~~~   81 (135)
T d1yl7a1          61 LEFLIDNGIHAVVGTTGFTAE   81 (135)
T ss_dssp             HHHHHHTTCEEEECCCCCCHH
T ss_pred             HHHHHhcCCCEEEeccccchh
Confidence            112234566677676766433

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.38  E-value=0.016  Score=45.80  Aligned_cols=37  Identities=14%  Similarity=0.106  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 8999999999999999999999864

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.021  Score=46.48  Aligned_cols=67  Identities=21%  Similarity=0.331  Sum_probs=50.2

Q ss_pred             CCCCCEEEEEcc---cHHHHHHHHHHccCC-CeEEEEcCCC-C-Chh---HHHhhC--CeecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVK-M-DPQ---LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~---G~iG~~iA~~l~~~G-~~V~~~d~~~-~-~~~---~~~~~g--~~~~~~l~e~l~~aDvVv~~   99 (223)
                      .+.|++|+++|-   +++..+++..+..+| +++.++.|.. . ..+   .+++.+  +....+++++++++|+|...
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~  228 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT  228 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEEC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeec
Confidence            589999999996   889999999999885 6888888753 1 221   122223  34567899999999998754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.0039  Score=46.94  Aligned_cols=89  Identities=18%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCe-EEEEcCCC-CChhHHHhhCCee-----cCCHHhhccc-----CCEEEEcCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCN-LLYHDRVK-MDPQLEKETGAKF-----EEDLDTMLPK-----CDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~-V~~~d~~~-~~~~~~~~~g~~~-----~~~l~e~l~~-----aDvVv~~~p  101 (223)
                      .+.+|.|.| .|.+|...++.++.+|++ |++.+.+. .........|...     .+++.+.+++     +|+|+-++.
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG  109 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG  109 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence            357899999 599999999999999986 55555543 2223344556432     1345554433     899998886


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                        .+    .....++.++++..++.++.
T Consensus       110 --g~----~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         110 --GD----ISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             --HH----HHHHHHTTEEEEEEEEEC--
T ss_pred             --ch----hHHHHhhhccccccEEEecc
Confidence              22    23678899999999998864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.33  E-value=0.011  Score=47.82  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=33.2

Q ss_pred             CCCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        34 l~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+||||.|.| .|-||+.+++.|...|.+|++++|+.
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4789999999 69999999999999999999999875

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.0087  Score=38.69  Aligned_cols=45  Identities=13%  Similarity=0.221  Sum_probs=38.3

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (223)
                      .|.+|.|.|. |.+|....+.++.+|++|++..++++..+..+++|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            6788999886 99999999999999999999988776666666655

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=95.27  E-value=0.027  Score=44.43  Aligned_cols=81  Identities=21%  Similarity=0.254  Sum_probs=54.8

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHH
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~  113 (223)
                      ..|++|++||+-    ...+.++..|+++.++++++..       +......-++++++||+|+++-.  .-..+-+ +.
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTGs--TlvN~Tl-~~  185 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITCA--SVVDKTL-PR  185 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEETH--HHHHTCH-HH
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEec--hhhcCCH-HH
Confidence            479999999985    3556677788999999998632       22223456788999999988764  1111111 56


Q ss_pred             HHhcCCCCcEEEEcC
Q 027408          114 RIAKMKKGVLIVNNA  128 (223)
Q Consensus       114 ~~~~mk~ga~ivn~s  128 (223)
                      +++..|+...+|-++
T Consensus       186 LL~~~~~a~~vvl~G  200 (251)
T d2h1qa1         186 LLELSRNARRITLVG  200 (251)
T ss_dssp             HHHHTTTSSEEEEES
T ss_pred             HHHhCCcCCEEEEEC
Confidence            777777776665554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.27  E-value=0.01  Score=47.32  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            379999999996 7899999999999999999999864

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.26  E-value=0.0081  Score=46.91  Aligned_cols=57  Identities=18%  Similarity=0.292  Sum_probs=42.0

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p  101 (223)
                      |||.|.|. |-||+.+++.|...|++|++.|++...        +....+++++++  ..|+|+-+.-
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D--------~~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD--------ITNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC--------TTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc--------CCCHHHHHHHHHHcCCCEEEeecc
Confidence            68999996 999999999999999999999986421        111223455664  4588776544

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.26  E-value=0.015  Score=47.42  Aligned_cols=66  Identities=20%  Similarity=0.126  Sum_probs=44.9

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe-------ecCCHHhhcccCCEEEEcC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~e~l~~aDvVv~~~  100 (223)
                      .+|+|.|.| .|-||+.+++.|...|.+|+++|+..............       ....+.++++.+|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            789999999 69999999999999999999998754221111111111       1123334567899887655

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.21  E-value=0.02  Score=46.44  Aligned_cols=69  Identities=19%  Similarity=0.227  Sum_probs=48.9

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHH---HhhCCee-----cC---CHHhhcccCCEEEEcCCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE---KETGAKF-----EE---DLDTMLPKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~---~~~g~~~-----~~---~l~e~l~~aDvVv~~~p~  102 (223)
                      +.|+|.|+| .|.||+.+++.|.+.|++|.+..|++.+....   ...+++.     .+   .++.++..+|.++...+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            458999999 59999999999999999999998876443221   1123321     11   244567888998877764


Q ss_pred             C
Q 027408          103 T  103 (223)
Q Consensus       103 ~  103 (223)
                      .
T Consensus        82 ~   82 (350)
T d1xgka_          82 Q   82 (350)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.25  Score=37.14  Aligned_cols=157  Identities=12%  Similarity=0.105  Sum_probs=95.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEE-EEcC---CCCCh---hHHHhhCCeec-------C-----CHHhhc--ccCCE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDR---VKMDP---QLEKETGAKFE-------E-----DLDTML--PKCDI   95 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~---~~~~~---~~~~~~g~~~~-------~-----~l~e~l--~~aDv   95 (223)
                      +||+++|.+..|..+.+.|...|++|. ++..   .....   ..+.+.++...       .     ++-+.+  -+.|+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~Dl   80 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAEL   80 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCCc
Confidence            689999999999999999988899976 3421   11111   23344444211       0     111222  25799


Q ss_pred             EEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC-----CCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCC
Q 027408           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA-----RGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP  170 (223)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s-----rg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~  170 (223)
                      ++++.-     ..++.++.++..+-|.+=+..|     ||.    ..+..++.+|.-. .+.-++.-.+--...+.+...
T Consensus        81 iv~~~~-----~~ii~~~~l~~~~~g~iN~H~slLP~yrG~----~pi~wai~~g~~~-~GvTih~~~~~~D~G~Ii~q~  150 (203)
T d2bw0a2          81 NVLPFC-----SQFIPMEIISAPRHGSIIYHPSLLPRHRGA----SAINWTLIHGDKK-GGFSIFWADDGLDTGDLLLQK  150 (203)
T ss_dssp             EEESSC-----SSCCCHHHHTCSTTCEEEEESSCTTTTBSS----CHHHHHHHTTCSE-EEEEEEECCSSSSCSCEEEEE
T ss_pred             eEEeec-----chhhhhhhhhhhhhHhhhhhhccccccccc----ceeeeeecccccc-cCceeEEeccccccchhheee
Confidence            988764     4678899999888776666666     344    3466777777533 345555544434445666556


Q ss_pred             CeEEccCCCCCcHHHHHH-----HHHHHHHHHHHHHcCCC
Q 027408          171 NQAMTPHVSGTTIDAQLR-----YAAGVKDMLDRYFKGED  205 (223)
Q Consensus       171 nv~~tPH~a~~t~~~~~~-----~~~~~~~~i~~~~~g~~  205 (223)
                      .+-+.|+--..+-  ..+     ....+.+.+..+.+|+-
T Consensus       151 ~~~i~~~dt~~~l--~~k~l~~~~~~~~~~~l~~i~~g~~  188 (203)
T d2bw0a2         151 ECEVLPDDTVSTL--YNRFLFPEGIKGMVQAVRLIAEGKA  188 (203)
T ss_dssp             EEECCTTCCHHHH--HHHTTTHHHHHHHHHHHHHHHHTCC
T ss_pred             cccCCCCccHHHH--HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            6777775322221  222     23456777888888863

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.20  E-value=0.013  Score=47.78  Aligned_cols=67  Identities=13%  Similarity=0.093  Sum_probs=46.4

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----h-----------CCeecCCHHhhcccCCEEEE
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----T-----------GAKFEEDLDTMLPKCDIVVV   98 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~-----------g~~~~~~l~e~l~~aDvVv~   98 (223)
                      .||+|.|.|. |-||+.+++.|...|++|++..|+.........    .           .+....++++++..+|.|+.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            5999999995 999999999999999999988775421111110    0           11122356678889998875


Q ss_pred             cCC
Q 027408           99 NTP  101 (223)
Q Consensus        99 ~~p  101 (223)
                      +.-
T Consensus        90 ~a~   92 (342)
T d1y1pa1          90 IAS   92 (342)
T ss_dssp             CCC
T ss_pred             hcc
Confidence            543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.15  E-value=0.012  Score=46.46  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 6799999999999999999999864

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=95.14  E-value=0.081  Score=38.72  Aligned_cols=55  Identities=7%  Similarity=0.086  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcC
Q 027408           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (223)
Q Consensus        46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~  100 (223)
                      ++.++++..+..+|+++.++.|..-........++....++++.++++|+|+.-.
T Consensus        20 ~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~   74 (161)
T d1js1x2          20 AVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN   74 (161)
T ss_dssp             HHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeeh
Confidence            4899999999999999999998753322222335666789999999999998643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.13  E-value=0.013  Score=47.65  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      .|+|.|||.|..|-.+|..|+..|.+|++++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            68999999999999999999999999999998653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.12  E-value=0.0091  Score=46.07  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=30.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ++|+|||.|..|-..|..|+..|++|++++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            579999999999999999999999999999754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.03  E-value=0.056  Score=42.19  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 7899999999999999999999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.98  E-value=0.011  Score=46.27  Aligned_cols=37  Identities=16%  Similarity=0.142  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcc-cH--HHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~--iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      -|.||++.|.|. |.  ||.++|+.|...|++|++.+++.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            389999999996 54  99999999999999999998865

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.96  E-value=7.8e-05  Score=53.22  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.6

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN   59 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G   59 (223)
                      ++++|+|+|.||+.+|+++++||
T Consensus        99 r~l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2          99 RNLITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             HHHHHHHTTSCCSCBCCGGGTC-
T ss_pred             CCEEEEcCCHHHHHHHHHHHhcC
Confidence            46899999999999999999987

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.86  E-value=0.017  Score=44.47  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .-.+++|.|||.|..|-..|..|+..|++|.+++++.
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            3589999999999999999999999999999999865

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.82  E-value=0.0081  Score=45.22  Aligned_cols=64  Identities=20%  Similarity=0.194  Sum_probs=41.5

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCe--EEEEcCCCCChhHHHhhCCe-------ecCCHHhhcccCCEEEEcCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCN--LLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~--V~~~d~~~~~~~~~~~~g~~-------~~~~l~e~l~~aDvVv~~~p  101 (223)
                      +||.|.| .|.||+.+++.|...|.+  |+...|++...... ..+++       ...++.++++.+|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-cCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            6899999 699999999999988865  55555643211111 11111       12344566788999987654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.0067  Score=47.50  Aligned_cols=37  Identities=30%  Similarity=0.234  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (223)
                      .|++++|.|+|+|.+|..+|..|...|. ++..+|...
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            5999999999999999999999999998 588998654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.012  Score=46.75  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             CCCEEEEE--cccHHHHHHHHHHcc-CCCeEEEEcCCC
Q 027408           35 EGKTVGTV--GCGRIGKLLLQRLKP-FNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIi--G~G~iG~~iA~~l~~-~G~~V~~~d~~~   69 (223)
                      +||+|+||  |-+.||.++|+.|.. .|.+|+.++|+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~   38 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV   38 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999888  678999999999875 589999999975

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.73  E-value=0.098  Score=41.02  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 7799999999999999999999864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.53  E-value=0.02  Score=44.62  Aligned_cols=39  Identities=21%  Similarity=0.160  Sum_probs=35.0

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD   71 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~   71 (223)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+...
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            589999999997 579999999999999999999987643

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.027  Score=46.08  Aligned_cols=32  Identities=22%  Similarity=0.132  Sum_probs=28.1

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      |.+.|.| .|-||+.+++.|...|++|+++||.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            5666889 7999999999999999999999984

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.38  E-value=0.037  Score=43.33  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=29.3

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ||.+.|-|. +.||+++|+.|...|++|++++|+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            666677785 6799999999999999999999864

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.37  E-value=0.089  Score=39.70  Aligned_cols=97  Identities=9%  Similarity=0.035  Sum_probs=69.6

Q ss_pred             HHHHHHccCCCeEEEEcCCC----CChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEE
Q 027408           50 LLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus        50 ~iA~~l~~~G~~V~~~d~~~----~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      ..++.|.+.|++|++=.-..    -+.+...+.|+...++.+++. ++|+|+..-|.+        .+.++.||+|+++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence            45677888899998764321    234455566888777777777 589887655522        24578899999998


Q ss_pred             EcCCCCccCHHHHHHHHHhCCccEEEeeCCCC
Q 027408          126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (223)
Q Consensus       126 n~srg~~vd~~al~~~L~~g~i~~a~lDv~~~  157 (223)
                      ..-..  .....+.+.|.+.++...++|..+.
T Consensus        92 ~~l~p--~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          92 TYLHL--AAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             ECCCG--GGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             EecCc--ccchHHHHHHHHcCCEEEEeeeccc
Confidence            87654  3356899999999999888886533

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.33  E-value=0.017  Score=45.86  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=33.3

Q ss_pred             cCCCCCEEEEEccc---HHHHHHHHHHccCCCeEEEEcCC
Q 027408           32 YDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        32 ~~l~g~~igIiG~G---~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      ..|+||++.|.|.+   .||+++|+.|...|++|++.+++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            46999999999986   59999999999999999988764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.23  E-value=0.018  Score=45.23  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=31.9

Q ss_pred             cCCCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCC
Q 027408           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        32 ~~l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      +.|.||++.|.|. +.||+++|+.|...|++|++..++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            3599999999996 679999999999999999875543

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=94.19  E-value=0.017  Score=42.86  Aligned_cols=105  Identities=17%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-hCCee-cCCHH-hhcccCCEEEEcCCCChhhhhccc--
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKF-EEDLD-TMLPKCDIVVVNTPLTEKTRGMFD--  111 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~-~~~l~-e~l~~aDvVv~~~p~~~~t~~~i~--  111 (223)
                      .+|||=|||+||+.+.+.+...+.+|.+.+-.. ..+.... +.... ...++ ++-..-|.+++--    ....+..  
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~-~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g----~~I~~~~~~   75 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT-DNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDG----KAIRATAVK   75 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS-CHHHHHHHHHCCTTTCSCSSCEEECSSEEEETT----EEEEEECCS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCc-chhhhhheeecccccCccccccccccceeEecc----eeEEEEecC
Confidence            489999999999999999887789988777533 3332221 11100 00011 1112334444311    1111111  


Q ss_pred             -HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408          112 -KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       112 -~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~  146 (223)
                       .+.+..-+-|.-+|--+.|...+.+.+...|+.|-
T Consensus        76 ~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~ga  111 (168)
T d2g82a1          76 DPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGA  111 (168)
T ss_dssp             SGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             ChHHCcccccCCceeEeccccccchHHhhhhhcccc
Confidence             12222223456666667888888888888888663

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.043  Score=43.90  Aligned_cols=63  Identities=13%  Similarity=0.069  Sum_probs=41.8

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHh-h-----CCeecCCHHhhcccCCEEEEc
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKE-T-----GAKFEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~-~-----g~~~~~~l~e~l~~aDvVv~~   99 (223)
                      |+|.|.| .|-||+.+++.|...|.+|+++|+.. ...+.... .     .+...+.++.++.++|+|+-+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~Vihl   72 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHL   72 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEEC
Confidence            7899999 59999999999999999999998632 22211111 1     111123445566789988643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.035  Score=43.03  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +-.+|.|||.|.-|-..|..|+..|++|.++..+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            45679999999999999999999999999998754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.89  E-value=0.024  Score=42.27  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=29.1

Q ss_pred             EEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (223)
                      +|.|||.|..|-+.|..|+..|. +|++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            58999999999999999999997 699999764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.062  Score=43.29  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=29.1

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      |+|.|+|. |-||+.+++.|...|.+|+++|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            57999994 999999999999999999999864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.84  E-value=0.045  Score=42.25  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=31.9

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .||+|.|.|. |.||+++|+.|...|++|...|+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4899999997 7899999999999999999998765

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.82  E-value=0.017  Score=43.54  Aligned_cols=65  Identities=18%  Similarity=0.129  Sum_probs=41.4

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhhCCeecCCHHh----hcccCCEEEEcCCCC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDLDT----MLPKCDIVVVNTPLT  103 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~~~~~l~e----~l~~aDvVv~~~p~~  103 (223)
                      -|+|.|.|. |.||+.+++.|...|.  +|+...|++....  ..... ...++.+    +....|.|+.|+..+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~--~~~~~-~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH--PRLDN-PVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC--TTEEC-CBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc--ccccc-cccchhhhhhccccchheeeeeeeee
Confidence            379999997 9999999999988887  5776666542211  11111 1123333    334579998886433

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.63  E-value=0.036  Score=37.55  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=32.3

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ..++.||+|+|||.|.-|..+|..+.....+++...++.
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            356899999999999999999999988877765555443

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=93.62  E-value=0.038  Score=40.95  Aligned_cols=31  Identities=26%  Similarity=0.527  Sum_probs=26.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR   67 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~   67 (223)
                      .||||=|||+||+.+.+.+...+.+|.+.+-
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            3799999999999999999877888877764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.61  E-value=0.038  Score=44.59  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=29.1

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCC--CeEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVK   69 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G--~~V~~~d~~~   69 (223)
                      =|+|+|||.|.-|-.+|..|+..|  .+|.+++++.
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            378999999999999999886554  6899999874

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.45  E-value=0.022  Score=44.69  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=30.1

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +|.|||.|..|..+|..|+..|.+|.++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999999999999864

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.43  E-value=0.034  Score=43.17  Aligned_cols=31  Identities=23%  Similarity=0.184  Sum_probs=29.3

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|||.|-+|.++|..|...|.+|+++++..
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999864

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.35  E-value=0.04  Score=43.22  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        34 l~g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            78999999986 6699999999999999999999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.30  E-value=0.047  Score=41.42  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=28.9

Q ss_pred             EEEEEcccHHHHHHHHHHc--cCCCeEEEEcCCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLK--PFNCNLLYHDRVKM   70 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~--~~G~~V~~~d~~~~   70 (223)
                      +|+|||.|..|-+.|..|+  .+|++|++|++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            8999999999999999885  46889999998753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.28  E-value=0.06  Score=45.39  Aligned_cols=91  Identities=20%  Similarity=0.334  Sum_probs=59.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhh-----------CC-------------eecCCHHhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKET-----------GA-------------KFEEDLDTM   89 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~-----------g~-------------~~~~~l~e~   89 (223)
                      .|+++.=+|+|. |..+...++.+|+ +|+++|.++...+.++..           +.             ......++.
T Consensus       216 pgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         216 KGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            578999999975 6666667777776 799999976433333210           00             001234567


Q ss_pred             cccCCEEEEcCC-CChhhhhcccHHHHhcCCCCcEEEEc
Q 027408           90 LPKCDIVVVNTP-LTEKTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus        90 l~~aDvVv~~~p-~~~~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                      +..+|+|++..- ..+.....+ .+.+..||||+.||..
T Consensus       295 ~~~adVV~inn~~f~~~l~~~L-~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         295 IPQCDVILVNNFLFDEDLNKKV-EKILQTAKVGCKIISL  332 (406)
T ss_dssp             GGGCSEEEECCTTCCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             cccceEEEEecccCchHHHHHH-HHHHHhcCCCcEEEEe
Confidence            788999987532 234444444 6788999999998864

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=93.26  E-value=0.069  Score=42.32  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=27.5

Q ss_pred             EEEEEc-ccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           38 TVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        38 ~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      ||.|.| .|-||+.+++.|...|++|+++|+-
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~   33 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            688888 5999999999999899999999853

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.26  E-value=0.039  Score=40.86  Aligned_cols=31  Identities=23%  Similarity=0.134  Sum_probs=29.4

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|||.|..|...|..|+..|.+|++++++.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7899999999999999999999999999865

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.16  E-value=0.047  Score=37.35  Aligned_cols=34  Identities=18%  Similarity=0.016  Sum_probs=28.6

Q ss_pred             CCEEEEEcccHHHHHHHHHHc---cCCCeEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLK---PFNCNLLYHDRVK   69 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~---~~G~~V~~~d~~~   69 (223)
                      .+++.|||.|.+|-.+|..+.   ..|.+|..+.+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            378999999999999998654   4588999998764

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.10  E-value=0.14  Score=37.52  Aligned_cols=20  Identities=30%  Similarity=0.640  Sum_probs=18.2

Q ss_pred             EEEEEcccHHHHHHHHHHcc
Q 027408           38 TVGTVGCGRIGKLLLQRLKP   57 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~   57 (223)
                      +|+|+|+|.+|+.+++.+..
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~   25 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLA   25 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHH
Confidence            69999999999999998864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.09  E-value=0.066  Score=38.33  Aligned_cols=40  Identities=15%  Similarity=0.089  Sum_probs=34.3

Q ss_pred             ccCCCCCEEEEE--cccHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           31 AYDLEGKTVGTV--GCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        31 ~~~l~g~~igIi--G~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      +....++.+.|+  |.|.||..+|..|+.+|++|.++.+.+.
T Consensus        34 ~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          34 GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            345668888887  8999999999999999999999998753

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.09  E-value=0.052  Score=41.67  Aligned_cols=33  Identities=12%  Similarity=0.031  Sum_probs=30.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (223)
                      .+|.|||.|..|..+|..|+..|. +|.++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            479999999999999999999996 899999865

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.098  Score=40.27  Aligned_cols=35  Identities=14%  Similarity=0.175  Sum_probs=29.6

Q ss_pred             CCCCCEEEEEc-----------------ccHHHHHHHHHHccCCCeEEEEcC
Q 027408           33 DLEGKTVGTVG-----------------CGRIGKLLLQRLKPFNCNLLYHDR   67 (223)
Q Consensus        33 ~l~g~~igIiG-----------------~G~iG~~iA~~l~~~G~~V~~~d~   67 (223)
                      +|.|++|.|-+                 -|.+|.++|+.+..+|++|.++.-
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g   54 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSG   54 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhc
Confidence            57788877765                 699999999999999999887753

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.073  Score=42.67  Aligned_cols=65  Identities=22%  Similarity=0.219  Sum_probs=41.4

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCC-CeEEEEcCCCCChh-HHHhhCCee-------cCCHHh-hcccCCEEEEcCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQ-LEKETGAKF-------EEDLDT-MLPKCDIVVVNTP  101 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~-~~~~~g~~~-------~~~l~e-~l~~aDvVv~~~p  101 (223)
                      |||.|.|. |-||+.+++.|.+.| .+|++.|+...... .....+++.       ..++.+ +..++|+|+-+.-
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            58999995 999999999998888 58999987542111 111111211       112233 5667998876554

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.65  E-value=0.049  Score=39.50  Aligned_cols=31  Identities=19%  Similarity=0.111  Sum_probs=26.7

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEE
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH   65 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~   65 (223)
                      .+++|.|||.|.+|-.+|..|+.+|.++.++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            4678999999999999999999999874443

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=1.5  Score=32.57  Aligned_cols=156  Identities=11%  Similarity=0.078  Sum_probs=93.2

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEE-EEcCCCCC---------hhHHHhhCCeec--C---C--HHhhc--ccCCEEE
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMD---------PQLEKETGAKFE--E---D--LDTML--PKCDIVV   97 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~~~~---------~~~~~~~g~~~~--~---~--l~e~l--~~aDvVv   97 (223)
                      ++|.++|.+.+|..+.+.|...|.+|. ++......         .+.+++.++..+  .   +  +-+.+  .++|+++
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~~~Dlii   80 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIF   80 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEE
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhhccccee
Confidence            689999999999999999988899975 44322111         123445555422  1   1  11222  2689988


Q ss_pred             EcCCCChhhhhcccHHHHhcCCCCcEEEEcC-----CCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccCCCCe
Q 027408           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA-----RGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ  172 (223)
Q Consensus        98 ~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s-----rg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~~~nv  172 (223)
                      ++.-     ..++.++.++..+.+.+=+..|     ||.    ..+..++.+|.-. .+.=++.-++.-...+.+....+
T Consensus        81 ~~g~-----~~ii~~~il~~~~~~~iN~H~slLP~yrG~----~p~~wai~~g~~~-~G~Tih~i~~~iD~G~Il~q~~~  150 (203)
T d2blna2          81 SFYY-----RHLIYDEILQLAPAGAFNLHGSLLPKYRGR----APLNWVLVNGETE-TGVTLHRMVKRADAGAIVAQLRI  150 (203)
T ss_dssp             EESC-----CSCCCHHHHTTCTTCEEEEESSCTTTTEES----CHHHHHHHTTCSE-EEEEEEECCSSTTCSCEEEEEEE
T ss_pred             eeec-----ccchhcccchhhHHHHHHHhhhcchhhhhh----hhhhhhhhccccc-ccceeEEeeccCCCccceeeccc
Confidence            7753     4578889998888776666666     444    3366667777533 34444444443344566655666


Q ss_pred             EEccCCCCCcHHHHHHHH----HHHHHHHHHHHcCC
Q 027408          173 AMTPHVSGTTIDAQLRYA----AGVKDMLDRYFKGE  204 (223)
Q Consensus       173 ~~tPH~a~~t~~~~~~~~----~~~~~~i~~~~~g~  204 (223)
                      -+.|.--.  .+...++.    ..+.+.+..+.+|+
T Consensus       151 ~i~~~~t~--~~l~~k~~~~~~~l~~~~l~~i~~g~  184 (203)
T d2blna2         151 AIAPDDIA--ITLHHKLCHAARQLLEQTLPAIKHGN  184 (203)
T ss_dssp             ECCTTCCH--HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccchhhH--HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            67765322  22333333    34556677777775

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=92.33  E-value=0.053  Score=40.27  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccC---CCeEEEEcC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF---NCNLLYHDR   67 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~---G~~V~~~d~   67 (223)
                      .||||=|||+||+.+.+.+...   ..+|.+.+-
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd   34 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND   34 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence            3799999999999999987543   356776664

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.26  E-value=0.078  Score=39.18  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=24.8

Q ss_pred             EEEEEcccHHHHHHHHHHcc---CCCeEEEEcC
Q 027408           38 TVGTVGCGRIGKLLLQRLKP---FNCNLLYHDR   67 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~---~G~~V~~~d~   67 (223)
                      ||||=|||+||+.+.+.+..   .+.+|.+.+-
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd   34 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEecc
Confidence            79999999999999998753   3578777764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.99  E-value=0.078  Score=42.25  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=29.7

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .|.|||.|..|..+|..|+..|.+|.+++.+.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            58999999999999999999999999999765

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.92  E-value=0.072  Score=41.39  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=29.0

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|||.|.+|.++|..|+..|.+|+++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8899999999999999999999999999853

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.88  E-value=0.067  Score=42.13  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=28.8

Q ss_pred             EEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (223)
                      +|.|||.|.+|.++|..|+..|. +|.+++++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999998996 699999864

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=91.86  E-value=0.12  Score=40.62  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----hCCe---ecCCHHhhc--ccCCEEEEcCCCCh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGAK---FEEDLDTML--PKCDIVVVNTPLTE  104 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g~~---~~~~l~e~l--~~aDvVv~~~p~~~  104 (223)
                      ..|++|.=+|+|. |. ++..++..|.+|+++|.++...+.+++    .++.   ...+..+.+  ...|+|+......+
T Consensus       119 ~~g~~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~~  196 (254)
T d2nxca1         119 RPGDKVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CTTCEEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHH
T ss_pred             CccCEEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcccccc
Confidence            5799999999996 43 444566789999999998865554442    2331   234566655  35798887654221


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCcc
Q 027408          105 KTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  148 (223)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~ivn~srg~~-vd~~al~~~L~~g~i~  148 (223)
                        ..-+-++..+.+|||..++-.+  -+ -+.+.+.+++++....
T Consensus       197 --l~~l~~~~~~~LkpGG~lilSg--il~~~~~~v~~~~~~~Gf~  237 (254)
T d2nxca1         197 --HAALAPRYREALVPGGRALLTG--ILKDRAPLVREAMAGAGFR  237 (254)
T ss_dssp             --HHHHHHHHHHHEEEEEEEEEEE--EEGGGHHHHHHHHHHTTCE
T ss_pred             --HHHHHHHHHHhcCCCcEEEEEe--cchhhHHHHHHHHHHCCCE
Confidence              1122356677889988776421  11 2456777788776554

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.051  Score=40.09  Aligned_cols=35  Identities=11%  Similarity=0.050  Sum_probs=31.1

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +++.|.|||-|..|...|..++.+|++|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            45689999999999999999999999999998643

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.72  E-value=0.11  Score=36.94  Aligned_cols=32  Identities=25%  Similarity=0.234  Sum_probs=27.7

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .||.|||.|.+|-.+|..|+. +.+|.++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            489999999999999999975 67999998753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.69  E-value=0.079  Score=39.23  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=28.3

Q ss_pred             CEEEEEcccHHHHHHHHHHccC--CCeEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~--G~~V~~~d~~~   69 (223)
                      +||.|||.|.+|-.+|..|+..  +.+|+++++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            6899999999999999999876  55788888653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.64  E-value=0.089  Score=39.30  Aligned_cols=30  Identities=13%  Similarity=0.107  Sum_probs=28.4

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      |.|||.|..|...|..++.+|.+|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999874

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.1  Score=38.48  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=27.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-CCeEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-G~~V~~~d~~~   69 (223)
                      .+|||=|||+||+.+.+.+... .++|.+.+...
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~~   35 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence            4799999999999999988655 57888777543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.60  E-value=0.083  Score=43.30  Aligned_cols=31  Identities=26%  Similarity=0.235  Sum_probs=28.5

Q ss_pred             CCEEEEEc-ccHHHHHHHHHHccCCCeEEEEc
Q 027408           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD   66 (223)
Q Consensus        36 g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d   66 (223)
                      ||+|.|.| .|-||+.+++.|...|++|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            79999999 49999999999999999999997

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.41  E-value=0.096  Score=40.14  Aligned_cols=35  Identities=23%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      +.||.|.|. |.||+++|+.|...|++|+..|++..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            457889995 89999999999999999999998753

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.26  E-value=0.094  Score=39.89  Aligned_cols=32  Identities=22%  Similarity=0.196  Sum_probs=29.6

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      |.|||.|..|...|..|+..|++|+++++...
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999999999999999999999999998653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.22  E-value=0.098  Score=41.87  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ....|.|||.|..|-.+|..|+..|.+|.++++.+
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            45579999999999999999999999999999754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.089  Score=41.33  Aligned_cols=31  Identities=23%  Similarity=0.178  Sum_probs=28.7

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|||.|..|-..|..|+..|.+|++++.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.20  E-value=0.098  Score=39.75  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=30.6

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      +|++.|.|. +.||+++|+.|...|++|++.+++..
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            477788885 89999999999999999999998764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.12  E-value=0.12  Score=40.74  Aligned_cols=33  Identities=15%  Similarity=0.084  Sum_probs=29.9

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |+|.|.| .|-||+.+++.|...|++|+++++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6899999 59999999999998899999999864

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.90  E-value=0.081  Score=40.10  Aligned_cols=93  Identities=13%  Similarity=0.182  Sum_probs=56.8

Q ss_pred             CCCEEEEEcc--cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh----CC----ee-cCCHHhh-cccCCEEEEcCCC
Q 027408           35 EGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GA----KF-EEDLDTM-LPKCDIVVVNTPL  102 (223)
Q Consensus        35 ~g~~igIiG~--G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g~----~~-~~~l~e~-l~~aDvVv~~~p~  102 (223)
                      .+.+|.=+||  |.+...+++.+...+.+|+++|.++...+.+++.    +.    .. ..+..+. ...+|+|++..-.
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l  118 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  118 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence            5779999999  6667777877777799999999987545544431    11    11 1222222 2456777664221


Q ss_pred             ---ChhhhhcccHHHHhcCCCCcEEEEc
Q 027408          103 ---TEKTRGMFDKDRIAKMKKGVLIVNN  127 (223)
Q Consensus       103 ---~~~t~~~i~~~~~~~mk~ga~ivn~  127 (223)
                         +++...-+-++..+.||||..++..
T Consensus       119 ~~~~~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         119 QFLPPEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             GGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccChhhHHHHHHHHHHhCCCCceeecc
Confidence               1122222347788889999877653

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=90.87  E-value=0.098  Score=41.29  Aligned_cols=58  Identities=14%  Similarity=0.084  Sum_probs=39.7

Q ss_pred             CCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcC
Q 027408           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNT  100 (223)
Q Consensus        36 g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~  100 (223)
                      -|+|.|.| .|.||+.+++.|...|..+++.+.....       ++......+++++  ..|+|+.+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~-------~~~~~~~~~~~~~~~~~d~v~~~a   62 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-------NLLDSRAVHDFFASERIDQVYLAA   62 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC-------CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhc-------cccCHHHHHHHHhhcCCCEEEEcc
Confidence            36899999 5999999999999999998888754321       1111123334443  468887765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.13  Score=36.18  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHH----ccCCCeEEEEcCCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRL----KPFNCNLLYHDRVK   69 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l----~~~G~~V~~~d~~~   69 (223)
                      .++++.|||.|.+|-.+|..+    +..|.+|..+.+.+
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            368999999999999998877    45799999998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.81  E-value=0.014  Score=44.26  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=22.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCe
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCN   61 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~   61 (223)
                      ++|.|||.|-+|.+.|..|+..|.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            5899999999999999999887753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.80  E-value=0.21  Score=33.97  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=27.8

Q ss_pred             CCEEEEEcccHHHHHHHHHHccC---CCeEEEEcCCC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPF---NCNLLYHDRVK   69 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~---G~~V~~~d~~~   69 (223)
                      .+++.|||.|.+|-.+|..+..+   |.+|..+.+.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            47899999999999999776655   45798888754

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=90.79  E-value=0.11  Score=38.49  Aligned_cols=107  Identities=17%  Similarity=0.157  Sum_probs=53.1

Q ss_pred             CEEEEEcccHHHHHHHHHHccC----CCeEEEEcCCCCChhHHHh-hCCee-cCCH-HhhcccCCEEEEcCCCChhhhhc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKE-TGAKF-EEDL-DTMLPKCDIVVVNTPLTEKTRGM  109 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~-~g~~~-~~~l-~e~l~~aDvVv~~~p~~~~t~~~  109 (223)
                      .+|||=|||+||+.+.+.+...    ..+|.+.+-.. ..+.... +.... .-.+ .++-.+.+.+++-    .....+
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~-~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~----g~~i~i   76 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLG-DPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVN----GDKIRV   76 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSS-CHHHHHHHHHEETTTEECSSCEEEETTEEEET----TEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCC-ChHHHHHhhcccccCCCcCceEEeccceEEEC----CEEEEE
Confidence            4799999999999999987532    45677766533 3332221 11000 0000 1111233333331    111122


Q ss_pred             ccHH---HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          110 FDKD---RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       110 i~~~---~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                      +...   .+..-+-|.-+|--+.|..-+.+.+...|+.|--+
T Consensus        77 ~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~Gakk  118 (173)
T d1obfo1          77 DANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK  118 (173)
T ss_dssp             ECCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSE
T ss_pred             EecCCHHHCcccccccceEEEecccccCHHHHHHHhccCCcc
Confidence            2222   22222234444445567777777777788776544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.67  E-value=0.093  Score=38.74  Aligned_cols=34  Identities=12%  Similarity=0.048  Sum_probs=30.5

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      ..++|.|||.|..|...|..++.+|++++++++.
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            3578999999999999999999999999999854

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=0.22  Score=34.45  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=35.0

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +...+||+|+|||.|..+-..|..|..+.-+|+++-|..
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            445689999999999999999999999999999888765

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=90.59  E-value=0.45  Score=39.33  Aligned_cols=96  Identities=19%  Similarity=0.159  Sum_probs=68.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh--------------hHHHhh--CCee----------cCCH
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--------------QLEKET--GAKF----------EEDL   86 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--------------~~~~~~--g~~~----------~~~l   86 (223)
                      -|.|-+|.=++-...|-..++.|..+|.+|+-+.+.....              ..+..+  |-+.          ..-+
T Consensus         3 PL~GirVld~~~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~   82 (427)
T d2vjma1           3 PLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKELL   82 (427)
T ss_dssp             TTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHH
Confidence            4899999999988888889999999999999888532100              001111  1110          1236


Q ss_pred             HhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        87 ~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .+++++||+|+-..+...--+-=++.+.++...|.-+.+.++
T Consensus        83 ~~Lv~~aDv~i~n~~pg~~~rlGL~~~~l~~~NP~LI~~sis  124 (427)
T d2vjma1          83 EQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK  124 (427)
T ss_dssp             HHHHHHCSEEEECCSTTHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHhCCeeeECCCcchHHHcCCCchhhhhhCCccceeeee
Confidence            688999999998887444444457899999999999988885

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=90.57  E-value=0.13  Score=39.72  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             CEE-EEEcc-cHHHHHHHHHHccCCCe-------EEEEcCCC
Q 027408           37 KTV-GTVGC-GRIGKLLLQRLKPFNCN-------LLYHDRVK   69 (223)
Q Consensus        37 ~~i-gIiG~-G~iG~~iA~~l~~~G~~-------V~~~d~~~   69 (223)
                      |+| .|-|. +.||+++|+.|...|++       |+.++|+.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~   42 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   42 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH
Confidence            454 45585 78999999999998987       88888864

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.1  Score=41.98  Aligned_cols=113  Identities=9%  Similarity=0.136  Sum_probs=69.4

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccC----CC-------eEEEEcCCCC----Chh---HHHh----hCC-eecCCHH
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM----DPQ---LEKE----TGA-KFEEDLD   87 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~----G~-------~V~~~d~~~~----~~~---~~~~----~g~-~~~~~l~   87 (223)
                      ++.|...+|.|.|.|.-|..+|+.+...    |.       +++.+|+...    ...   ..+.    ... ....+|+
T Consensus        20 gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~   99 (294)
T d1pj3a1          20 SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFE   99 (294)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHH
T ss_pred             CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHH
Confidence            4568889999999999999999987543    33       4899987531    000   0010    011 1124688


Q ss_pred             hhcc--cCCEEEEcCCCChhhhhcccHHHHh---cCCCCcEEEEcCCCCcc---CHHHHHHHHHhCCcc
Q 027408           88 TMLP--KCDIVVVNTPLTEKTRGMFDKDRIA---KMKKGVLIVNNARGAIM---DTQAVVDACSSGHIA  148 (223)
Q Consensus        88 e~l~--~aDvVv~~~p~~~~t~~~i~~~~~~---~mk~ga~ivn~srg~~v---d~~al~~~L~~g~i~  148 (223)
                      ++++  +.|+++-+..    ..+++.++.++   .|.+..+|.=.|....-   +.+..+++ .+|+..
T Consensus       100 e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~~-t~grai  163 (294)
T d1pj3a1         100 DAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTL-TEGRCL  163 (294)
T ss_dssp             HHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHH-TTTCCE
T ss_pred             HHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHhh-ccCceE
Confidence            8875  6777765542    23567777765   45588899988887543   23444443 445544

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.51  E-value=0.07  Score=40.21  Aligned_cols=33  Identities=12%  Similarity=0.051  Sum_probs=28.9

Q ss_pred             CEEEEEcccHHHHHHHHHHccCC-------CeEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G-------~~V~~~d~~~   69 (223)
                      .+|+|||.|.-|-+.|..|...|       ++|.+|++.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            48999999999999999997766       5899999865

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=90.43  E-value=0.25  Score=36.33  Aligned_cols=30  Identities=27%  Similarity=0.426  Sum_probs=24.7

Q ss_pred             EEEEEcccHHHHHHHHHHcc-CCCeEEEEcC
Q 027408           38 TVGTVGCGRIGKLLLQRLKP-FNCNLLYHDR   67 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~-~G~~V~~~d~   67 (223)
                      +|||=|||+||+.+.+.+.. -..+|.+.+-
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            79999999999999997754 3578777754

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.092  Score=40.02  Aligned_cols=110  Identities=9%  Similarity=0.058  Sum_probs=64.3

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhh-C-----------------------Ce-ecCCHHh
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-G-----------------------AK-FEEDLDT   88 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-g-----------------------~~-~~~~l~e   88 (223)
                      ..|.+|..+|||. | ..+..|...|++|+++|.++...+.+.+. +                       +. ...++.+
T Consensus        44 ~~~~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          44 KSGLRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CCSCEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            3788999999998 4 44566777899999999986444333221 1                       11 1112222


Q ss_pred             h----cccCCEEEEcCC---CChhhhhcccHHHHhcCCCCcEEEEcC--C------CC--ccCHHHHHHHHHhC
Q 027408           89 M----LPKCDIVVVNTP---LTEKTRGMFDKDRIAKMKKGVLIVNNA--R------GA--IMDTQAVVDACSSG  145 (223)
Q Consensus        89 ~----l~~aDvVv~~~p---~~~~t~~~i~~~~~~~mk~ga~ivn~s--r------g~--~vd~~al~~~L~~g  145 (223)
                      +    ....|+|+.+.-   ..++-..-.-++....+|||..++-+.  +      |+  .++++.+.+.+..+
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~~  195 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKI  195 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTTT
T ss_pred             ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcCC
Confidence            2    123566664432   123333334467888899998643332  2      11  36788888887654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.25  E-value=0.15  Score=38.05  Aligned_cols=37  Identities=24%  Similarity=0.470  Sum_probs=31.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      ..++||+|.|||.|.-|..+|..+...+.++...-++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            4689999999999999999999998888876655544

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.22  E-value=0.5  Score=36.10  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=29.9

Q ss_pred             CCEEEEEcc-cHHHHHHHHHHc---cCCCeEEEEcCCCCC
Q 027408           36 GKTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMD   71 (223)
Q Consensus        36 g~~igIiG~-G~iG~~iA~~l~---~~G~~V~~~d~~~~~   71 (223)
                      -|||.|.|. +.||+++|+.|.   +.|++|++.+|+...
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~   41 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   41 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            478999996 789999999884   568999999997643

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.10  E-value=0.11  Score=38.73  Aligned_cols=31  Identities=13%  Similarity=0.117  Sum_probs=28.8

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|||.|..|...|..++.+|.+|+++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.01  E-value=0.16  Score=36.58  Aligned_cols=30  Identities=17%  Similarity=-0.034  Sum_probs=27.9

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      |.|||.|..|-..|..+..+|++|+++++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.91  E-value=0.15  Score=38.08  Aligned_cols=31  Identities=16%  Similarity=0.192  Sum_probs=28.9

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|||.|..|...|..+...|++|.+++...
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999999754

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.57  E-value=0.29  Score=35.76  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=25.3

Q ss_pred             EEEEEcccHHHHHHHHHHccC-CCeEEEEcC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR   67 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~-G~~V~~~d~   67 (223)
                      ||||=|||+||+.+.+.+... ..+|.+.+-
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            799999999999999988654 578877763

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=89.42  E-value=0.18  Score=37.22  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=25.3

Q ss_pred             EEEEEcccHHHHHHHHHHccC-CCeEEEEcC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR   67 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~-G~~V~~~d~   67 (223)
                      +|||=|+|+||+.+.+.+... ..+|.+.+-
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd   33 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcC
Confidence            799999999999999988654 578877775

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=89.30  E-value=0.17  Score=40.02  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=28.4

Q ss_pred             EEEEEcccHHHHHHHHHHc-----cCCCeEEEEcCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLK-----PFNCNLLYHDRVK   69 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~-----~~G~~V~~~d~~~   69 (223)
                      -|.|||.|..|..+|..|.     ..|.+|.++++.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            3899999999999999995     5799999999865

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=89.29  E-value=0.49  Score=38.86  Aligned_cols=96  Identities=13%  Similarity=0.132  Sum_probs=69.6

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCCh------hHHHh--hCCeec----------CCHHhhcccCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP------QLEKE--TGAKFE----------EDLDTMLPKCD   94 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~------~~~~~--~g~~~~----------~~l~e~l~~aD   94 (223)
                      -|.|-+|.=++-+..|-..++.|..+|.+|+=+.+.....      .....  .|.+.+          .-+.+++++||
T Consensus         8 PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~aD   87 (402)
T d1xk7a1           8 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTD   87 (402)
T ss_dssp             TTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTTCS
T ss_pred             CCCCCEEEEeCChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhhcC
Confidence            4899999999988889888999999999999888643111      11111  122111          23568899999


Q ss_pred             EEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      +|+.......--+-=++.+.++.+.|.-+.+.++
T Consensus        88 v~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sis  121 (402)
T d1xk7a1          88 IFIEASKGPAFARRGITDEVLWQHNPKLVIAHLS  121 (402)
T ss_dssp             EEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             Cceeeecccccccccccccchhhccccccceeee
Confidence            9998877444444457889999999999988875

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=89.05  E-value=0.83  Score=31.33  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=68.4

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i  110 (223)
                      +..+|.+-|. |.-|+..++.+..+|-+|. ++.|...-.   ...|+..+++.+|+++  .+|.=++-+|..-     .
T Consensus         5 k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~---~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~-----a   76 (119)
T d2nu7a1           5 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT---THLGLPVFNTVREAVAATGATASVIYVPAPF-----C   76 (119)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTE---EETTEEEESSHHHHHHHHCCCEEEECCCGGG-----H
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCc---ccCCCchhhHHHHHHHHhCCCeEEEeccHHH-----H
Confidence            3568999997 9999999999999999955 777754222   2357888889999875  4788888888222     2


Q ss_pred             cHHHHhcCCCCc-EEE-EcCCCCccCHHHHHHHHHhCC
Q 027408          111 DKDRIAKMKKGV-LIV-NNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       111 ~~~~~~~mk~ga-~iv-n~srg~~vd~~al~~~L~~g~  146 (223)
                      -...++.+..|- .+| -+-.-++.|...+.+.++...
T Consensus        77 ~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~  114 (119)
T d2nu7a1          77 KDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAG  114 (119)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhCC
Confidence            223333333332 333 333445567777766666544

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=88.85  E-value=0.19  Score=38.49  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.3

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      .|.|||.|..|...|..|+..|.+|+++++.+.
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            488999999999999999999999999998763

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.72  E-value=0.22  Score=39.75  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=30.2

Q ss_pred             CCCEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        35 ~g~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      .-|+|.|.| .|-||+.+++.|...|.+|+++|+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            447899999 5999999999999999999999864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.70  E-value=0.23  Score=37.34  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=28.6

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|||.|..|.+.|..++.+|++|.+++..+
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7899999999999999999999999999543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.59  E-value=0.22  Score=39.67  Aligned_cols=33  Identities=21%  Similarity=0.128  Sum_probs=28.9

Q ss_pred             CEE-EEEc-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTV-GTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~i-gIiG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      ||| .|.| .|-||+.+++.|...|++|+++||..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            578 5778 59999999999999999999999854

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.59  E-value=0.28  Score=35.19  Aligned_cols=34  Identities=12%  Similarity=-0.036  Sum_probs=28.8

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCe-EEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV   68 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~-V~~~d~~   68 (223)
                      .+++|.|||-|.+|..+|..+..+|++ |..+-|.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            467899999999999999999989886 6666654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.54  E-value=0.17  Score=37.88  Aligned_cols=31  Identities=16%  Similarity=0.126  Sum_probs=28.8

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      .|.|||.|..|...|..++.+|.+|.+++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4889999999999999999999999999864

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=88.41  E-value=3.5  Score=30.25  Aligned_cols=158  Identities=15%  Similarity=0.143  Sum_probs=95.2

Q ss_pred             CCEEEEEcccHHHHHHHHHHccCCCeEE-EEcCCCCCh------------hHHHhhCCeec-------CCHHhhcc--cC
Q 027408           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMDP------------QLEKETGAKFE-------EDLDTMLP--KC   93 (223)
Q Consensus        36 g~~igIiG~G~iG~~iA~~l~~~G~~V~-~~d~~~~~~------------~~~~~~g~~~~-------~~l~e~l~--~a   93 (223)
                      -++|.++|.+..+..+.+.|...|.+|. ++.......            ..+...++...       ....+.+.  +.
T Consensus         3 ~mKI~f~G~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (206)
T d1fmta2           3 SLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQA   82 (206)
T ss_dssp             CCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTTC
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhhcc
Confidence            4789999999999999999988898865 443321110            12222333221       11223332  57


Q ss_pred             CEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC-----CCCccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCccC
Q 027408           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA-----RGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY  168 (223)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s-----rg~~vd~~al~~~L~~g~i~~a~lDv~~~ep~~~~~~l~~  168 (223)
                      |+++++-.     ..++..+.++..+-|++=+.-|     ||.    ..+..++.+|.-. .+.-++.-.+--...+++.
T Consensus        83 d~~v~~~~-----~~ii~~~il~~~k~g~iN~Hps~LP~yRG~----~pi~wai~nge~~-~GvT~h~i~~~iD~G~Ii~  152 (206)
T d1fmta2          83 DVMVVVAY-----GLILPKAVLEMPRLGCINVHGSLLPRWRGA----APIQRSLWAGDAE-TGVTIMQMDVGLDTGDMLY  152 (206)
T ss_dssp             SEEEEESC-----CSCCCHHHHHSSTTCEEEEESSSTTTTBSS----CHHHHHHHHTCSE-EEEEEEECCSSSSCSCEEE
T ss_pred             eEEEeecc-----ccccchhhHhcCCCCeeecCchhhHhhhhh----hhhhhHHHcCCce-eceeEEEeccccChHHhhh
Confidence            88877765     5788899999998888877777     455    4577888888654 3444444433333446655


Q ss_pred             CCCeEEccCCCCCcHHHHHH----HHHHHHHHHHHHHcCCC
Q 027408          169 MPNQAMTPHVSGTTIDAQLR----YAAGVKDMLDRYFKGED  205 (223)
Q Consensus       169 ~~nv~~tPH~a~~t~~~~~~----~~~~~~~~i~~~~~g~~  205 (223)
                      ...+-+.|-  -+..+...+    ....+.+.|..+.+|+.
T Consensus       153 q~~~~i~~~--dt~~~l~~k~~~~~~~l~~~~i~~i~~~~~  191 (206)
T d1fmta2         153 KLSCPITAE--DTSGTLYDKLAELGPQGLITTLKQLADGTA  191 (206)
T ss_dssp             EEEEECCTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhccccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            556666663  122233333    33445566777777763

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=88.32  E-value=0.12  Score=37.55  Aligned_cols=41  Identities=12%  Similarity=0.095  Sum_probs=30.1

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (223)
                      ..|++|..+|||. |+ .+..|...|++|+++|.++...+.++
T Consensus        19 ~~~~rvLd~GCG~-G~-~a~~la~~G~~V~gvD~S~~~i~~a~   59 (201)
T d1pjza_          19 VPGARVLVPLCGK-SQ-DMSWLSGQGYHVVGAELSEAAVERYF   59 (201)
T ss_dssp             CTTCEEEETTTCC-SH-HHHHHHHHCCEEEEEEECHHHHHHHH
T ss_pred             CCCCEEEEecCcC-CH-HHHHHHHcCCceEeecccHHHHHHHH
Confidence            4789999999986 33 44455567999999999865444444

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.17  E-value=0.39  Score=38.30  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=28.1

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      |.|.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            5777888 5999999999999999999999853

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=88.08  E-value=0.17  Score=40.83  Aligned_cols=98  Identities=9%  Similarity=0.082  Sum_probs=59.3

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccC----CC-------eEEEEcCCCC----Chh---HHHhh--CCeecCCHHhhc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM----DPQ---LEKET--GAKFEEDLDTML   90 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~----G~-------~V~~~d~~~~----~~~---~~~~~--g~~~~~~l~e~l   90 (223)
                      ++.|...+|.|+|.|.-|..+|+.+...    |.       +++.+|+...    ..+   ....+  ......++.+++
T Consensus        20 gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i   99 (308)
T d1o0sa1          20 KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVI   99 (308)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHH
T ss_pred             CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHH
Confidence            4568889999999999999998887543    42       4889987631    000   00000  111224566666


Q ss_pred             ccC--CEEEEcCCCChhhhhcccHHHHhcCC---CCcEEEEcCCCCc
Q 027408           91 PKC--DIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAI  132 (223)
Q Consensus        91 ~~a--DvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~ivn~srg~~  132 (223)
                      +.+  ++++-+..    ..++++++.++.|.   +..+|.=.|....
T Consensus       100 ~~~kptvliG~s~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1         100 RAARPGALIGAST----VRGAFNEEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             HHHCCSEEEECSS----CTTCSCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             hccccccEEeccc----ccCCCCHHHHHHHHhhCCCcEEEEccCCCC
Confidence            532  45544432    24566777776553   7778888887654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.01  E-value=0.24  Score=37.27  Aligned_cols=31  Identities=19%  Similarity=0.060  Sum_probs=29.0

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|||.|..|.+.|..++.+|.+|.++++.+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7899999999999999999999999998754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.81  E-value=0.31  Score=37.20  Aligned_cols=33  Identities=18%  Similarity=0.213  Sum_probs=27.9

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|.|.|. +.||+++|+.|...|++|++.|++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            44567785 7899999999999999999999864

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.67  E-value=0.67  Score=37.36  Aligned_cols=96  Identities=14%  Similarity=0.065  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhH-H--HhhCCe----------ecCCHHhhcccCCEEEEc
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-E--KETGAK----------FEEDLDTMLPKCDIVVVN   99 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~--~~~g~~----------~~~~l~e~l~~aDvVv~~   99 (223)
                      -|.|-+|.=++-+.-|-..++.|..+|.+|+=+.+....... .  -..|-+          ...-+.+++++||+|+..
T Consensus         3 PL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~n   82 (359)
T d1x74a1           3 PLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEG   82 (359)
T ss_dssp             TTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEec
Confidence            388999999999888989999999999999988764311110 0  001111          112356888999999988


Q ss_pred             CCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .+...-.+-=++.+.++...|+-+.+.++
T Consensus        83 ~~pg~~~~lgl~~~~l~~~nP~lI~~sis  111 (359)
T d1x74a1          83 YRPGVTERLGLGPEECAKVNDRLIYARMT  111 (359)
T ss_dssp             SCTTHHHHHTCSHHHHHHHCTTCEEEEEE
T ss_pred             CCCCchhhcCCCHHHHHhhcCCceEEEEe
Confidence            87554444457899999999999998874

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.64  E-value=0.27  Score=36.47  Aligned_cols=30  Identities=13%  Similarity=0.073  Sum_probs=28.0

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      +.|||.|..|...|..++.+|.+|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999864

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.61  E-value=0.25  Score=35.12  Aligned_cols=29  Identities=28%  Similarity=0.340  Sum_probs=26.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCe
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN   61 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~   61 (223)
                      .-.|++|.|||.|.+|..+|..+...|.+
T Consensus        26 ~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          26 APVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             CCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             cccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            45689999999999999999999999975

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.54  E-value=0.29  Score=38.66  Aligned_cols=32  Identities=22%  Similarity=0.072  Sum_probs=28.8

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      |++.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            6777888 5999999999999999999999984

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.02  E-value=0.46  Score=36.07  Aligned_cols=39  Identities=21%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHcc--------------------CCC-eEEEEcCCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKP--------------------FNC-NLLYHDRVK   69 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~--------------------~G~-~V~~~d~~~   69 (223)
                      ...+.|++|.|||-|+++.-+|+.+..                    .|. +|..+.|..
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            346789999999999999999998876                    465 588888764

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.96  E-value=1.8  Score=29.65  Aligned_cols=104  Identities=14%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i  110 (223)
                      ...+|.+-|. |..|+..++.+..+|-+|. ++.|...-.   .-.++..+++.+|+++  .+|.=++.+|..- ..   
T Consensus         6 k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~---~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~-a~---   78 (121)
T d1oi7a1           6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM---EVLGVPVYDTVKEAVAHHEVDASIIFVPAPA-AA---   78 (121)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHHHHSCCSEEEECCCHHH-HH---
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCc---EEECCchHhhHHHHHHhcCCeEEEEeeCHHH-HH---
Confidence            3558999997 9999999999999999854 777754222   1246778889998875  5898889999211 11   


Q ss_pred             cHHHHhcCCCC-cEEEEcC-CCCccCHHHHHHHHHhCC
Q 027408          111 DKDRIAKMKKG-VLIVNNA-RGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       111 ~~~~~~~mk~g-a~ivn~s-rg~~vd~~al~~~L~~g~  146 (223)
                       ...++.+..| ..+|-++ .-++.|...+.+.+++..
T Consensus        79 -dAi~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~~  115 (121)
T d1oi7a1          79 -DAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG  115 (121)
T ss_dssp             -HHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Confidence             2223333222 2344444 445567777777766544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.96  E-value=0.21  Score=38.14  Aligned_cols=90  Identities=18%  Similarity=0.228  Sum_probs=52.7

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----hC--Cee-cCCHHhh--cccCCEEEEcC---
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG--AKF-EEDLDTM--LPKCDIVVVNT---  100 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g--~~~-~~~l~e~--l~~aDvVv~~~---  100 (223)
                      .+.+++|.=||||. |+ ++..+...|.+|+++|.++...+.+++    .+  +.. ..+..++  -...|+|++..   
T Consensus        35 ~~~~~~vLDiGCG~-G~-~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~  112 (246)
T d1y8ca_          35 NLVFDDYLDLACGT-GN-LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDST  112 (246)
T ss_dssp             TCCTTEEEEETCTT-ST-THHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGG
T ss_pred             CCCCCeEEEEeCcC-CH-HHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeee
Confidence            46788999999983 43 455666678999999998644443332    22  322 2344443  23469887532   


Q ss_pred             ---CCChhhhhcccHHHHhcCCCCcEEE
Q 027408          101 ---PLTEKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       101 ---p~~~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                         +..++... +-.+..+.||||..+|
T Consensus       113 ~~~~~~~~~~~-~l~~~~~~LkpgG~~i  139 (246)
T d1y8ca_         113 NYIIDSDDLKK-YFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             GGCCSHHHHHH-HHHHHHTTEEEEEEEE
T ss_pred             eccCCHHHHHH-HHHHHHHhCCCCeEEE
Confidence               21112111 2366777788877654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.96  E-value=0.49  Score=35.60  Aligned_cols=39  Identities=21%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHc--------------------cCCC-eEEEEcCCC
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLK--------------------PFNC-NLLYHDRVK   69 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~--------------------~~G~-~V~~~d~~~   69 (223)
                      ...+.|++|.|||-|+++.-+|+.+.                    ..|. +|..+.|..
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            34678999999999999999999775                    4666 488887754

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.85  E-value=0.32  Score=35.92  Aligned_cols=31  Identities=16%  Similarity=0.149  Sum_probs=28.4

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|||.|..|...|..++..|.+|.++++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            7899999999999999999999999998643

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=86.76  E-value=0.31  Score=37.89  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcccHHHHHHHHHHcc-CCCeEEEEcCCC
Q 027408           34 LEGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVK   69 (223)
Q Consensus        34 l~g~~igIiG~G~iG~~iA~~l~~-~G~~V~~~d~~~   69 (223)
                      ....-|.|||.|.-|-..|..|+. .|++|.++++.+
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            345669999999999999999865 699999999864

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.73  E-value=2.6  Score=31.30  Aligned_cols=29  Identities=17%  Similarity=0.200  Sum_probs=22.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 027408          179 SGTTIDAQLRYAAGVKDMLDRYFKGEDFP  207 (223)
Q Consensus       179 a~~t~~~~~~~~~~~~~~i~~~~~g~~~~  207 (223)
                      ...+.+..+.+...+.+.+.+..+..+++
T Consensus       193 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~p  221 (230)
T d2qwxa1         193 EIASEEERKGMVAAWSQRLQTIWKEEPIP  221 (230)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTGGGCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34577778888888888888888888764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.68  E-value=0.31  Score=38.86  Aligned_cols=31  Identities=23%  Similarity=0.190  Sum_probs=28.4

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccCCCeEEEEcC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDR   67 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~G~~V~~~d~   67 (223)
                      |||.|.| .|-||+.+++.|...|.+|++.|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            6899999 599999999999999999999974

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.63  E-value=0.47  Score=32.69  Aligned_cols=40  Identities=18%  Similarity=0.141  Sum_probs=34.8

Q ss_pred             cccCCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        30 ~~~~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      .+...+||+|+|||.|.-+-..|..|..+.-+|+.+-|.+
T Consensus        24 D~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          24 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             HGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             ChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            3556889999999999999999999999988998887653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.41  E-value=0.32  Score=38.10  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=29.6

Q ss_pred             EEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      -|.|||.|..|...|..|+..|.+|+++++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            38999999999999999999999999999754

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.39  E-value=0.55  Score=34.98  Aligned_cols=32  Identities=31%  Similarity=0.446  Sum_probs=23.4

Q ss_pred             CEEEEEcccHHHHHHHHHHccC-----CCeEEEE-cCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPF-----NCNLLYH-DRV   68 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~-----G~~V~~~-d~~   68 (223)
                      .+|||=|||+||+.+.+.+...     ..+|.++ |+.
T Consensus         3 ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~   40 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMN   40 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESC
T ss_pred             eEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCC
Confidence            4899999999999999977432     2455554 453

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.10  E-value=0.35  Score=37.32  Aligned_cols=35  Identities=17%  Similarity=-0.029  Sum_probs=28.9

Q ss_pred             EEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCCh
Q 027408           38 TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (223)
Q Consensus        38 ~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~   72 (223)
                      |..|-|. +.||+++|+.|...|++|++.+++....
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~   37 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQK   37 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            5667786 5599999999999999999999875443

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.04  E-value=0.25  Score=40.71  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=28.8

Q ss_pred             EEEEEcccHHHHHHHHHHcc------CCCeEEEEcCCC
Q 027408           38 TVGTVGCGRIGKLLLQRLKP------FNCNLLYHDRVK   69 (223)
Q Consensus        38 ~igIiG~G~iG~~iA~~l~~------~G~~V~~~d~~~   69 (223)
                      -|.|||.|.-|.+.|..|++      .|++|+++++..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            59999999999999999875      799999999864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=86.02  E-value=0.56  Score=36.43  Aligned_cols=106  Identities=16%  Similarity=0.142  Sum_probs=63.6

Q ss_pred             CCCEEEEEcccHH--HHHHHHHHccCCCeEEEEcCCCCChhHHHh----hC----Ce-ecCCHHhhcc--cCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRI--GKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG----AK-FEEDLDTMLP--KCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~i--G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g----~~-~~~~l~e~l~--~aDvVv~~~p  101 (223)
                      .|++|.=+|+|.=  ...+|+.+.. +.+|+.+|+++...+.+++    .+    +. ...++.+.+.  ..|.|++.+|
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p  163 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIP  163 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCS
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCC
Confidence            5899999998654  4445555433 4589999987643333332    11    11 1234445443  3799999988


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~  146 (223)
                      ...    -+-+...+.||||..++...- .+-....+.++|++..
T Consensus       164 ~p~----~~l~~~~~~LKpGG~lv~~~P-~i~Qv~~~~~~l~~~g  203 (250)
T d1yb2a1         164 DPW----NHVQKIASMMKPGSVATFYLP-NFDQSEKTVLSLSASG  203 (250)
T ss_dssp             CGG----GSHHHHHHTEEEEEEEEEEES-SHHHHHHHHHHSGGGT
T ss_pred             chH----HHHHHHHHhcCCCceEEEEeC-CcChHHHHHHHHHHCC
Confidence            322    123778899999998875311 1222355667776654

>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Hypothetical protein YfdW
species: Escherichia coli [TaxId: 562]

Probab=85.91  E-value=0.64  Score=38.29  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC-CChh-------------HHHhh--CCee----------cCCH
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQ-------------LEKET--GAKF----------EEDL   86 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~-------------~~~~~--g~~~----------~~~l   86 (223)
                      -|.|-+|.=++-...|-..++.|..+|.+|+=+.+.. ....             .+..+  |-+.          ..-+
T Consensus         4 PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~   83 (417)
T d1q7ea_           4 PLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVM   83 (417)
T ss_dssp             TTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCchhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHH
Confidence            5899999999988888899999999999999888522 1100             01111  1110          1234


Q ss_pred             HhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 027408           87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (223)
Q Consensus        87 ~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~s  128 (223)
                      .+++++||+|+...+...--+.=++.+.++...|+-+.++++
T Consensus        84 ~~Li~~aDv~i~n~~pg~~~rlGl~~~~l~~~nP~lI~~sis  125 (417)
T d1q7ea_          84 EKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIK  125 (417)
T ss_dssp             HHHHHHCSEEEECCCC-------CCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHhcCcccEeccCCCcHhhcCCCHHHHHhhCCCEEEEeee
Confidence            578999999999887443333346888999999999888885

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=85.87  E-value=0.22  Score=38.31  Aligned_cols=59  Identities=19%  Similarity=0.184  Sum_probs=36.5

Q ss_pred             CEEEEEcc-cHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhccc--CCEEEEcC
Q 027408           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNT  100 (223)
Q Consensus        37 ~~igIiG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~--aDvVv~~~  100 (223)
                      |+|.|.|. |-||+.+++.|...|. +++.+++....    ..++.....+++++++  .|+|+-+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~~----~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEF----CGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSSS----CCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCccc----cCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            68999995 9999999999998886 44555543211    0111112234455553  58887554

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=85.53  E-value=0.23  Score=39.78  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=26.4

Q ss_pred             CCEEEEEc-ccHHHHHHHHHHccCCCe--EEEEcC
Q 027408           36 GKTVGTVG-CGRIGKLLLQRLKPFNCN--LLYHDR   67 (223)
Q Consensus        36 g~~igIiG-~G~iG~~iA~~l~~~G~~--V~~~d~   67 (223)
                      -|+|.|.| .|-||+.+++.|...|.+  |++.|+
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~   36 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   36 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence            47899999 699999999999877765  556654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.53  E-value=0.39  Score=36.31  Aligned_cols=89  Identities=15%  Similarity=0.164  Sum_probs=52.0

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----hC--Ce-ecCCHHhhc--ccCCEEEEcCC----
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG--AK-FEEDLDTML--PKCDIVVVNTP----  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g--~~-~~~~l~e~l--~~aDvVv~~~p----  101 (223)
                      .+++|.=||+|. |.. +..|...|.+|+++|.++...+.+++    .+  +. ...+.+++-  ...|+|++...    
T Consensus        41 ~~~~iLDiGcGt-G~~-~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~  118 (251)
T d1wzna1          41 EVRRVLDLACGT-GIP-TLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMY  118 (251)
T ss_dssp             CCCEEEEETCTT-CHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGG
T ss_pred             CCCEEEEeCCCC-Ccc-chhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhhc
Confidence            567999999986 544 44566678999999998754444332    22  22 123444432  34688776431    


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEE
Q 027408          102 LTEKTRGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~iv  125 (223)
                      .++.....+-.+..+.||||.+++
T Consensus       119 ~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         119 FDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CChHHHHHHHHHHHHHcCCCcEEE
Confidence            111111122356777888887664

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.29  E-value=0.55  Score=30.68  Aligned_cols=33  Identities=9%  Similarity=0.029  Sum_probs=28.0

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +||.|||-|.--.++|..|+....+++++--++
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~   33 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNA   33 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence            689999999999999999988888888774343

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=84.98  E-value=0.26  Score=37.02  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=52.4

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCe--ecCCHHhh-c--ccCCEEEEcCCC---Chhh
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--FEEDLDTM-L--PKCDIVVVNTPL---TEKT  106 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--~~~~l~e~-l--~~aDvVv~~~p~---~~~t  106 (223)
                      .+++|.=+||| .|... ..++..|.+|+++|.++...+.+++.+..  ...+.+++ +  ...|+|+..-..   -+..
T Consensus        42 ~~~~vLDiGcG-~G~~~-~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~  119 (246)
T d2avna1          42 NPCRVLDLGGG-TGKWS-LFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK  119 (246)
T ss_dssp             SCCEEEEETCT-TCHHH-HHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred             CCCEEEEECCC-Cchhc-ccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhH
Confidence            67899999998 34443 45566799999999987655656554432  12233333 2  346877653221   0111


Q ss_pred             hhcccHHHHhcCCCCcEEE
Q 027408          107 RGMFDKDRIAKMKKGVLIV  125 (223)
Q Consensus       107 ~~~i~~~~~~~mk~ga~iv  125 (223)
                      .. +-++....||||.+++
T Consensus       120 ~~-~l~~i~r~Lk~gG~~i  137 (246)
T d2avna1         120 DK-AFSEIRRVLVPDGLLI  137 (246)
T ss_dssp             HH-HHHHHHHHEEEEEEEE
T ss_pred             HH-HHHHHHhhcCcCcEEE
Confidence            11 2256777889987664

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.74  E-value=0.44  Score=36.57  Aligned_cols=31  Identities=16%  Similarity=0.248  Sum_probs=28.6

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      +.|||.|..|...|..++.+|.+|.++++..
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            6899999999999999999999999999743

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=84.23  E-value=1.2  Score=31.79  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=25.0

Q ss_pred             CEEEEEc-ccHHHHHHHHHHccC--CCeEEEEcC
Q 027408           37 KTVGTVG-CGRIGKLLLQRLKPF--NCNLLYHDR   67 (223)
Q Consensus        37 ~~igIiG-~G~iG~~iA~~l~~~--G~~V~~~d~   67 (223)
                      |+|.|+| .|.||++....++.+  .++|.+..-
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa   35 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA   35 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            5799999 599999999999876  467766553

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.13  E-value=0.31  Score=37.61  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHcc---CCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGC-GRIGKLLLQRLKP---FNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~-G~iG~~iA~~l~~---~G~~V~~~d~~~   69 (223)
                      .|.||.+.|-|. +.||+++|+.|..   .|++|++++|+.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            478888777787 6899999999964   699999999875

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=83.90  E-value=0.51  Score=37.22  Aligned_cols=31  Identities=13%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |.|||.|..|...|..|+..|.+|+++++.+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999754

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.69  E-value=0.27  Score=42.59  Aligned_cols=38  Identities=18%  Similarity=0.141  Sum_probs=33.4

Q ss_pred             cCCCCCEEEEEcccHHHHHHHHHHccCCC-eEEEEcCCC
Q 027408           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (223)
Q Consensus        32 ~~l~g~~igIiG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (223)
                      ..|..++|.|||+|.+|..+|+.|...|. +++++|...
T Consensus        21 ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          21 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            46899999999999999999999998887 588888754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.61  E-value=0.99  Score=31.24  Aligned_cols=37  Identities=14%  Similarity=0.173  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        33 ~l~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      -.+||+|.|||.|.-+-..|..|..+--+|+++-|..
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   67 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD   67 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecc
Confidence            4579999999999999999999999999999887754

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=83.30  E-value=6.7  Score=28.68  Aligned_cols=72  Identities=21%  Similarity=0.202  Sum_probs=49.4

Q ss_pred             HHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 027408           50 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (223)
Q Consensus        50 ~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~ivn~sr  129 (223)
                      .+.+.|+..|++++.++......           ..+++-+.++|+|+..- .-   ..-++++.++..++=.+++..+.
T Consensus        58 glr~~Le~~GhelV~~sd~~~~~-----------~el~k~l~DADivI~~p-f~---~~~lt~e~i~~ap~LKlI~~~g~  122 (186)
T d2naca2          58 GLRKYLESNGHTLVVTSDKDGPD-----------SVFERELVDADVVISQP-FW---PAYLTPERIAKAKNLKLALTAGI  122 (186)
T ss_dssp             GCHHHHHHTTCEEEEESCCSSTT-----------SHHHHHHTTCSEEEEBT-TB---CCCBCHHHHHHCTTCCEEEESSS
T ss_pred             hHHHHHHHCCCEEEEecCCCCCh-----------HHHHhhcccCCEEEEec-cc---ccccCHHHHhcCccceEEEEecc
Confidence            45678899999988776543211           24667788999998752 11   12478999999988888888877


Q ss_pred             CCc-cCHH
Q 027408          130 GAI-MDTQ  136 (223)
Q Consensus       130 g~~-vd~~  136 (223)
                      |.= ||.+
T Consensus       123 G~D~VDl~  130 (186)
T d2naca2         123 GSDHVDLQ  130 (186)
T ss_dssp             CCTTBCHH
T ss_pred             CCccccHH
Confidence            652 4443

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.79  E-value=0.44  Score=35.03  Aligned_cols=30  Identities=13%  Similarity=0.153  Sum_probs=28.1

Q ss_pred             EEEEcccHHHHHHHHHHccCCCeEEEEcCC
Q 027408           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (223)
Q Consensus        39 igIiG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (223)
                      |.|||.|.-|...|..++..|.+|.++++.
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=82.38  E-value=0.2  Score=36.26  Aligned_cols=30  Identities=13%  Similarity=0.182  Sum_probs=24.5

Q ss_pred             CEEEEEcccHHHHHHHHHHccCCCe--EEEEc
Q 027408           37 KTVGTVGCGRIGKLLLQRLKPFNCN--LLYHD   66 (223)
Q Consensus        37 ~~igIiG~G~iG~~iA~~l~~~G~~--V~~~d   66 (223)
                      .+|.|||.|.+|-.+|..|+.+|.+  |+...
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence            3599999999999999999988865  44443

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.08  E-value=1.2  Score=33.94  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=23.7

Q ss_pred             EEEEc-ccHHHHHHHHHHccCCCeEEEEcC
Q 027408           39 VGTVG-CGRIGKLLLQRLKPFNCNLLYHDR   67 (223)
Q Consensus        39 igIiG-~G~iG~~iA~~l~~~G~~V~~~d~   67 (223)
                      +.|.| .+.||+++|+.|...|++|++.++
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~   33 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCKVLVNYA   33 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            44556 478999999999999999987654

>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: NAD(P)H:quinone reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.85  E-value=2.9  Score=32.46  Aligned_cols=148  Identities=18%  Similarity=0.166  Sum_probs=79.6

Q ss_pred             cHHHHHHHHHHccCCCeEEEEcCCCCCh------hH-------------------HHhhCCe--ecCCHHhhcccCCEEE
Q 027408           45 GRIGKLLLQRLKPFNCNLLYHDRVKMDP------QL-------------------EKETGAK--FEEDLDTMLPKCDIVV   97 (223)
Q Consensus        45 G~iG~~iA~~l~~~G~~V~~~d~~~~~~------~~-------------------~~~~g~~--~~~~l~e~l~~aDvVv   97 (223)
                      ..+...+++.++..|.+|...|-....-      ..                   ....+..  .+....+.+..||.||
T Consensus        19 ~aL~~~~~~~l~~~G~eV~~~DLy~~~f~P~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~dDi~~~~~~l~~AD~IV   98 (273)
T d1d4aa_          19 YAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVI   98 (273)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECcccCCCCcCCHHHHhhhhcccccccchhhhhhhhcccCCcHHHHHHHHHHHhCCEEE
Confidence            3566677777888899999988643110      00                   0000000  0112335577899999


Q ss_pred             EcCCC-----ChhhhhcccHHHH-------------hcCCCCcEEEEcCCCCc----------cCHHHHHHHHHhCCccE
Q 027408           98 VNTPL-----TEKTRGMFDKDRI-------------AKMKKGVLIVNNARGAI----------MDTQAVVDACSSGHIAG  149 (223)
Q Consensus        98 ~~~p~-----~~~t~~~i~~~~~-------------~~mk~ga~ivn~srg~~----------vd~~al~~~L~~g~i~~  149 (223)
                      +..|.     ....++.+++-..             ..|+....++-++.|..          -..+.++..+..+-+.+
T Consensus        99 ~~~P~yw~s~PA~LK~~iDRV~~~G~af~~~~~~~~g~l~gKk~~~ivTtGg~~~~y~~~g~~~~~~~~l~~~~~~i~~f  178 (273)
T d1d4aa_          99 FQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHF  178 (273)
T ss_dssp             EEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTTBTTCCHHHHHHHHHTTTTGG
T ss_pred             EECChhhcCCCHHHHHHHHHhccCCcccccCCCCCCCcccCCeEEEEEecCCChhhhccccccCCHHHHHHHHHHHHHHh
Confidence            99884     2334444443321             12222233333333321          13345556666665555


Q ss_pred             EEeeCCCCCCCCCCCCccCCCCeEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 027408          150 YSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP  207 (223)
Q Consensus       150 a~lDv~~~ep~~~~~~l~~~~nv~~tPH~a~~t~~~~~~~~~~~~~~i~~~~~g~~~~  207 (223)
                      +++++.+              -++ .-.+...+.+.++.+.+.+.+.+.+.++.+|++
T Consensus       179 ~G~~~l~--------------~~~-~~~~~~~~~~~r~~~le~~~~~l~~L~~~~~~~  221 (273)
T d1d4aa_         179 CGFQVLE--------------PQL-TYSIGHTPADARIQILEGWKKRLENIWDETPLY  221 (273)
T ss_dssp             GTCEECC--------------CEE-ETTGGGSCHHHHHHHHHHHHHHHTTGGGSCCCC
T ss_pred             cCCeecc--------------eEE-EecCCCCCHHHHHHHHHHHHHHHHhhccCCCcC
Confidence            5444221              111 122445678888888888888888888888774

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.54  E-value=1.5  Score=30.14  Aligned_cols=36  Identities=8%  Similarity=-0.002  Sum_probs=30.5

Q ss_pred             CCCEEEEEcccH-----------HHHHHHHHHccCCCeEEEEcCCCC
Q 027408           35 EGKTVGTVGCGR-----------IGKLLLQRLKPFNCNLLYHDRVKM   70 (223)
Q Consensus        35 ~g~~igIiG~G~-----------iG~~iA~~l~~~G~~V~~~d~~~~   70 (223)
                      ..++|.|||.|.           .+...++.|+..|.+++..|.++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            457899999874           477889999999999999998874

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=81.49  E-value=0.83  Score=36.42  Aligned_cols=107  Identities=10%  Similarity=0.096  Sum_probs=64.6

Q ss_pred             ccCCCCCEEEEEcccHHHHHHHHHHccC----CC-------eEEEEcCCCC----Chh---HHHhh--CCeecCCHHhhc
Q 027408           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM----DPQ---LEKET--GAKFEEDLDTML   90 (223)
Q Consensus        31 ~~~l~g~~igIiG~G~iG~~iA~~l~~~----G~-------~V~~~d~~~~----~~~---~~~~~--g~~~~~~l~e~l   90 (223)
                      +..|...+|.|.|.|.-|..+|+.+...    |+       +++.+|+...    ..+   ..+.+  ......++++++
T Consensus        20 gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i   99 (298)
T d1gq2a1          20 KNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIV   99 (298)
T ss_dssp             TSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHH
T ss_pred             CCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHh
Confidence            4578999999999999999999888633    32       5888987631    000   00111  111234666666


Q ss_pred             cc--CCEEEEcCCCChhhhhcccHHHHh---cCCCCcEEEEcCCCCcc---CHHHHHHH
Q 027408           91 PK--CDIVVVNTPLTEKTRGMFDKDRIA---KMKKGVLIVNNARGAIM---DTQAVVDA  141 (223)
Q Consensus        91 ~~--aDvVv~~~p~~~~t~~~i~~~~~~---~mk~ga~ivn~srg~~v---d~~al~~~  141 (223)
                      +.  .++++-+..    ..+++.++.++   .|.+..+|.=.|....-   +.++.+++
T Consensus       100 ~~vkptvliG~s~----~~g~ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~w  154 (298)
T d1gq2a1         100 KDIKPTVLIGVAA----IGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKY  154 (298)
T ss_dssp             HHHCCSEEEECSC----CTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHH
T ss_pred             hccChheeEeccc----ccCcCCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhhh
Confidence            53  455554432    23667776665   45578888888876542   34444444

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.23  E-value=3.9  Score=28.22  Aligned_cols=100  Identities=16%  Similarity=0.106  Sum_probs=65.8

Q ss_pred             CCCEEEEEcc-cHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhhCCeecCCHHhhcc--cCCEEEEcCCCChhhhhcc
Q 027408           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (223)
Q Consensus        35 ~g~~igIiG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~e~l~--~aDvVv~~~p~~~~t~~~i  110 (223)
                      .+.+|.+-|+ |.-|+..++.+..+|-+|. ++.|...-.   ...++..+++.+|+.+  .+|.=++.+|  +.   ..
T Consensus        14 k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~---~~~giPVf~tV~eA~~~~~~daSvIfVP--p~---~a   85 (130)
T d1euca1          14 KNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK---THLGLPVFNTVKEAKEQTGATASVIYVP--PP---FA   85 (130)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHHHHHCCCEEEECCC--HH---HH
T ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCc---cccCccchhhHHHHHHhcCCcEEEEecC--HH---HH
Confidence            4668999998 9999999999999999955 777754221   2346778889999885  5898888998  22   12


Q ss_pred             cHHHHhcCCCCc-EEEEcCC-CCccCHHHHHHHH
Q 027408          111 DKDRIAKMKKGV-LIVNNAR-GAIMDTQAVVDAC  142 (223)
Q Consensus       111 ~~~~~~~mk~ga-~ivn~sr-g~~vd~~al~~~L  142 (223)
                      -...++.+..|- .+|-++- -++.|.-.+.+.+
T Consensus        86 ~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~  119 (130)
T d1euca1          86 AAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRL  119 (130)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHH
Confidence            223333332332 3444443 3445666666655

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=80.76  E-value=0.85  Score=35.08  Aligned_cols=31  Identities=23%  Similarity=0.343  Sum_probs=25.4

Q ss_pred             EEEE-c-ccHHHHHHHHHHccCCCeEEEEcCCC
Q 027408           39 VGTV-G-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (223)
Q Consensus        39 igIi-G-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (223)
                      |+|| | .+.||+++|+.|...|++|++.+++.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            5666 5 47899999999999999998876543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=80.62  E-value=0.63  Score=35.50  Aligned_cols=109  Identities=14%  Similarity=0.242  Sum_probs=62.6

Q ss_pred             CCCEEEEEcccHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----hC----Cee-cCCH-Hh---hcccCCEEEEcCC
Q 027408           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG----AKF-EEDL-DT---MLPKCDIVVVNTP  101 (223)
Q Consensus        35 ~g~~igIiG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g----~~~-~~~l-~e---~l~~aDvVv~~~p  101 (223)
                      .|++|.=+|||. |.-+.+.++....+|+++|.++...+.++.    .+    +.. ..+. .+   .-...|+|++..-
T Consensus        24 ~~~~VLDlGCG~-G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          24 RGDSVLDLGCGK-GGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             TTCEEEEETCTT-TTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CcCEEEEecccC-cHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            688999999998 554444444433579999998754444432    12    111 1111 11   1235798876432


Q ss_pred             -----CChhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCcc
Q 027408          102 -----LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (223)
Q Consensus       102 -----~~~~t~~~i~~~~~~~mk~ga~ivn~srg~~vd~~al~~~L~~g~i~  148 (223)
                           .+++....+-......||||.++|-+    +.|.+.+.+.+..+.+.
T Consensus       103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~----~~~~~~i~~~~~~~~~~  150 (252)
T d1ri5a_         103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMT----VPSRDVILERYKQGRMS  150 (252)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE----EECHHHHHHHHHHTCCB
T ss_pred             eeecCCCHHHHHHHHHHHhceeCCCCEEEEE----ecCHHHHHHHHHhcccC
Confidence                 12222122235566778998877643    35677888888777653

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.10  E-value=1.6  Score=30.86  Aligned_cols=63  Identities=11%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhhCCeecCCHHhhcccCCEEEEcCCCChhhhhcccHHHHh
Q 027408           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (223)
Q Consensus        46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e~l~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (223)
                      .-+..++..++.+|+++..+..-+...+...       ..++++++++|+|+++--..+.... +..+.++
T Consensus        27 sN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~-------~~l~~~~~~~DliittGG~s~g~~D-~~~~~l~   89 (155)
T d2ftsa3          27 SNRSTLLATIQEHGYPTINLGIVGDNPDDLL-------NALNEGISRADVIITSGGVSMGEKD-YLKQVLD   89 (155)
T ss_dssp             CHHHHHHHHHHTTTCCEEEEEEECSSHHHHH-------HHHHHHHHHCSEEEEESCCSSSCCH-HHHHHHH
T ss_pred             chHHHHHHHhcccccceEEEEEecCchhHHH-------HHHHHhhcccCEEEEeccccCCcch-hhHHHHH
Confidence            4578899999999999887765443333222       2467778899999887654433222 2244454