Citrus Sinensis ID: 027424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Secondary Structure (PSIPRED)
cccccccEEEEEcccccHHccccccccccEEEEccccccccccHHHccEEEEccHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHcccccEEEEEEEccHHHHHHHHHHccccEEEEcccccHHHHccccccccccccHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
HHHccccEEEEEccccccccccHHHHcccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHcccEccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHcccccccccEEEEEcccHHHHHHHHHHccccEEcccccccccEEEccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAHAHGALLlvdnsimspvlsrplelgADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQnaegsglapfdcwiCLRGVKTMALRVEKQQDNAQKIAEFLAShprvkkvnyaglpehpghelhysqakgagSVLSFLTGSLALSKHVVETTKYFSITVSfgsvkslismpcfmshasipvEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Flexible Loop (DISEMBL)
MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIsvgiedvndlisdldkalrtgpl
Low Complexity Region (SEG)
MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Disordered region (IsUnstruct)
******ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ**NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD**********
Disordered Region (DISOPRED)
MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG**
Disordered Region (DISEMBL)
MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Disordered Region (DISPRO)
MA*AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
P53780	464	Cystathionine beta-lyase,	yes	no	1.0	0.480	0.865	1e-114
O94350	390	Cystathionine beta-lyase	yes	no	0.964	0.551	0.541	1e-62
O31632	390	Cystathionine beta-lyase	yes	no	0.982	0.561	0.511	4e-61
Q55DV9	387	Cystathionine gamma-lyase	yes	no	0.968	0.558	0.502	1e-59
A2RM21	380	Cystathionine beta-lyase	yes	no	0.977	0.573	0.495	1e-56
P0A4K2	380	Cystathionine beta-lyase	yes	no	0.977	0.573	0.495	1e-56
O05394	379	Cystathionine gamma-lyase	no	no	0.982	0.577	0.479	3e-56
P0C2T9	380	Cystathionine beta-lyase	N/A	no	0.977	0.573	0.490	5e-55
P56069	380	Cystathionine gamma-synth	yes	no	0.977	0.573	0.472	7e-54
Q1M0P5	380	Cystathionine gamma-synth	yes	no	0.977	0.573	0.467	9e-54

>sp|P53780|METC_ARATH Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1

 Score =  410 bits (1055), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/223 (86%), Positives = 212/223 (95%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE
Sbjct: 242 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE 301

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP
Sbjct: 302 VYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLP 361

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSH
Sbjct: 362 DHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 421

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           ASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD A +T PL
Sbjct: 422 ASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 464

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 8

>sp|O94350|CBL_SCHPO Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=str3 PE=3 SV=4

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/218 (54%), Positives = 163/218 (74%), Gaps = 3/218 (1%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           + A  ALL++DN+++SPVL  PL+ G DIV  SATK+++GH D+M GV+A K + +AK +
Sbjct: 167 SKAKDALLVMDNTMLSPVLCNPLDFGYDIVYESATKYLSGHHDLMGGVIATKSDEIAKSV 226

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL-P 120
           +F  NA G+ +APF+C++ LRG+KTM LRVE+ Q NA +IA+FL S  +  +VN+ GL P
Sbjct: 227 FFNINAMGAAMAPFECFLLLRGIKTMGLRVERAQQNAIEIAKFLKS--KGLQVNFPGLDP 284

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +     + YS A+G G+V+S  TG + +SK +V TTK F I+VSFG+V SLISMP +MSH
Sbjct: 285 DAKSTAIFYSFARGPGAVMSVFTGDVEVSKTIVNTTKLFEISVSFGAVNSLISMPAYMSH 344

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           ASI  EVR ARGL+EDL+RI VGIE+V+DL +DL+ AL
Sbjct: 345 ASIKKEVRDARGLSEDLIRICVGIENVDDLKADLENAL 382

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|O31632|METC_BACSU Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1

 Score =  234 bits (596), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 154/219 (70%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A  +G L  +DN+ M+P L RPL+LG DIV+HSATKF++GHSDV++G+ AVK E L K+
Sbjct: 164 LAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLSGHSDVLSGLAAVKDEELGKQ 223

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           LY LQNA G+ L   DCW+ LRG+KT+ +R+EK    AQ++AEF   HP VK+V Y GL 
Sbjct: 224 LYKLQNAFGAVLGVQDCWLVLRGLKTLQVRLEKASQTAQRLAEFFQKHPAVKRVYYPGLA 283

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +HPG E H SQ+ GAG+VLSF   S    K +VE        VS G+V+S++S P  MSH
Sbjct: 284 DHPGAETHKSQSTGAGAVLSFELESKEAVKKLVENVSLPVFAVSLGAVESILSYPATMSH 343

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           A++P E R+ RG+T+ L+R+SVG+E  +DL  D ++AL+
Sbjct: 344 AAMPKEEREKRGITDGLLRLSVGVEHADDLEHDFEQALK 382

Catalyzes the transformation of cystathionine into homocysteine. Also exhibits cysteine desulfhydrase activity in vitro, producing sulfide from cysteine.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|Q55DV9|CGL_DICDI Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1

 Score =  229 bits (584), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/217 (50%), Positives = 151/217 (69%), Gaps = 1/217 (0%)

Query: 3   HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY 62
           H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I GHSD + GVLA   + L  +L 
Sbjct: 168 HSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLK 227

Query: 63  FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 122
           FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q NA  I  FL  HP+V++V Y GLP H
Sbjct: 228 FLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSH 287

Query: 123 PGHELHYSQAKG-AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 181
           P HE+   Q KG  G V+ F+ GS+  S+  +E  K F++  S G V+SLI +P  M+HA
Sbjct: 288 PQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHA 347

Query: 182 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           S+P E R   G+++ L+R+SVGIED+NDL++D+ +AL
Sbjct: 348 SVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/220 (49%), Positives = 150/220 (68%), Gaps = 2/220 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ GHSDV+AG++    + LA E
Sbjct: 160 IAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASE 219

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + FLQN+ G+ L P D W+  RG+KT+ALR+E    NAQKIAEFL +   V KV Y GL 
Sbjct: 220 IGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLN 279

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
            HPGHE+   Q    G ++SF LT   A+ K  VE   YF++  S G V+SLI +P  M+
Sbjct: 280 SHPGHEIAKKQMSAFGGMISFELTDENAV-KDFVENLSYFTLAESLGGVESLIEVPAVMT 338

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           HASIP E+R+  G+ + L+R+SVG+E + DL++D+ +AL 
Sbjct: 339 HASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/220 (49%), Positives = 150/220 (68%), Gaps = 2/220 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ GHSDV+AG++    + LA E
Sbjct: 160 IAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASE 219

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + FLQN+ G+ L P D W+  RG+KT+ALR+E    NAQKIAEFL +   V KV Y GL 
Sbjct: 220 IGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLN 279

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
            HPGHE+   Q    G ++SF LT   A+ K  VE   YF++  S G V+SLI +P  M+
Sbjct: 280 SHPGHEIAKKQMSAFGGMISFELTDENAV-KDFVENLSYFTLAESLGGVESLIEVPAVMT 338

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           HASIP E+R+  G+ + L+R+SVG+E + DL++D+ +AL 
Sbjct: 339 HASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1

 Score =  218 bits (554), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 145/219 (66%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A   G LL+VDN+  +P   +PL LGADIV+HSATK++ GHSDV+ G++    + L +E
Sbjct: 159 IAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEE 218

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           L+F+QN+ G  L P D W+ +RG+KT+ LR+E    NA+KIA FL +HP V+ + Y G  
Sbjct: 219 LHFVQNSTGGVLGPQDSWLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSS 278

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HPGHEL  +Q  G G ++SF  GS       +   K F+I  S G+V+SLIS+P  M+H
Sbjct: 279 NHPGHELAKTQGAGFGGMISFDIGSEERVDAFLGNLKLFTIAESLGAVESLISVPARMTH 338

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           ASIP E R   G+T+ L+RISVGIED  DL+ D+ +AL 
Sbjct: 339 ASIPRERRLELGITDGLIRISVGIEDAEDLLEDIGQALE 377

Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1

 Score =  214 bits (544), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/220 (49%), Positives = 149/220 (67%), Gaps = 2/220 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ GHSDV+AG++      LA E
Sbjct: 160 IAKAHNALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSNELAIE 219

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + FLQN+ G+ L P D W+  RG+KT+A R+E    NAQKIAEFL +   V KV Y GL 
Sbjct: 220 IGFLQNSIGAVLGPQDSWLVQRGIKTLAPRMEAHSANAQKIAEFLEASQAVSKVYYPGLV 279

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
            H GHE+   Q    G ++SF LT   A+ K+ VE  +YF++  S G V+SLI +P  M+
Sbjct: 280 NHEGHEIAKKQMTAFGGMISFELTDENAV-KNFVENLRYFTLAESLGGVESLIEVPAVMT 338

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           HASIP E+R+  G+ + L+R+SVG+E + DL++DL +AL 
Sbjct: 339 HASIPKELREEIGIKDGLIRLSVGVEALEDLLTDLKEALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1

 Score =  210 bits (534), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 103/218 (47%), Positives = 141/218 (64%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A  HG L +VDN+  +P    PL LGADIV HS TK++ GHSDV+AG++    E LA+E
Sbjct: 159 VAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQE 218

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + F QNA G  L P D W+  RG+KT+ LR+E  Q NA  +AEFL  HP+V++V Y GLP
Sbjct: 219 IAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLP 278

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HP +EL   Q +G   +LSF   + + +   VE+ K F +  S G V+SL+ +P FM+H
Sbjct: 279 THPNYELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGESLGGVESLVGIPAFMTH 338

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           A IP   R+A G+ + LVR+SVGIE   DL+ DL++A 
Sbjct: 339 ACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAF 376

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1

 Score =  209 bits (533), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 142/218 (65%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A  HG L +VDN+  +P    PL LGADIV+HS TK++ GHSDV+AG++    E LA+E
Sbjct: 159 VAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQE 218

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + F QNA G  L P D W+  RG+KT+ LR++  Q NA  +AEFL  HP+V++V Y GLP
Sbjct: 219 IAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMQAHQKNALCVAEFLEKHPKVERVYYPGLP 278

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HP +EL   Q +G   +LSF   + + +   VE+ K F +  S G V+SL+ +P FM+H
Sbjct: 279 THPNYELAKKQMRGFSGMLSFTLKNDSEATPFVESLKLFILGESLGGVESLVGVPAFMTH 338

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           A IP   R+A G+ + LVR+SVGIE   DL+ DL++A 
Sbjct: 339 ACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAF 376

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (taxid: 210)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
255543511	467	cystathionine beta-lyase, putative [Rici	0.995	0.475	0.914	1e-118
363806786	468	cystathionine beta-lyase, chloroplastic-	1.0	0.476	0.910	1e-118
356571951	467	PREDICTED: cystathionine beta-lyase, chl	1.0	0.477	0.905	1e-118
225441258	466	PREDICTED: cystathionine beta-lyase, chl	0.995	0.476	0.909	1e-117
255636979	223	unknown [Glycine max]	1.0	1.0	0.901	1e-116
449519446	409	PREDICTED: cystathionine beta-lyase, chl	0.995	0.542	0.896	1e-116
449452983	459	PREDICTED: cystathionine beta-lyase, chl	0.995	0.483	0.896	1e-116
226500444	470	LOC100281708 [Zea mays] gi|194703020|gb|	1.0	0.474	0.878	1e-114
255689401	212	cystathionine beta-lyase, partial [Glyci	0.950	1.0	0.924	1e-113
326511829	471	predicted protein [Hordeum vulgare subsp	0.995	0.471	0.873	1e-113

>gi|255543511|ref|XP_002512818.1| cystathionine beta-lyase, putative [Ricinus communis] gi|223547829|gb|EEF49321.1| cystathionine beta-lyase, putative [Ricinus communis]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/222 (91%), Positives = 216/222 (97%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH HGAL+LVDNSIMSPVLS+PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA++
Sbjct: 245 IAHTHGALVLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLARD 304

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           LYFLQNAEGSGLAPFDCWICLRG+KTMALRVEKQQDNAQKIAEFLA+HPRVKKVNYAGLP
Sbjct: 305 LYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQDNAQKIAEFLATHPRVKKVNYAGLP 364

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HPG +LHYSQAKGAGSVLSFLTGSL LSKH+VETTKYFSITVSFGSVKSLISMPCFMSH
Sbjct: 365 GHPGRDLHYSQAKGAGSVLSFLTGSLELSKHIVETTKYFSITVSFGSVKSLISMPCFMSH 424

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP 222
           ASIP +VR+ARGLTEDL+RISVGIEDVNDLI+DLD ALRTGP
Sbjct: 425 ASIPADVREARGLTEDLIRISVGIEDVNDLIADLDHALRTGP 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806786|ref|NP_001242026.1| cystathionine beta-lyase, chloroplastic-like [Glycine max] gi|255641003|gb|ACU20781.1| unknown [Glycine max]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/223 (91%), Positives = 215/223 (96%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH+HGAL+LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KE
Sbjct: 246 IAHSHGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLGKE 305

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           LYFLQNAEGSGLAPFDCW+CLRG+KTMALR+EKQQDNAQKIAEFLASHPRVKKVNYAGLP
Sbjct: 306 LYFLQNAEGSGLAPFDCWLCLRGIKTMALRIEKQQDNAQKIAEFLASHPRVKKVNYAGLP 365

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HPG +LHYSQAKGAGSVLSFLTGSL LSKH+VETTKYFSITVSFGSVKS ISMPCFMSH
Sbjct: 366 GHPGRDLHYSQAKGAGSVLSFLTGSLELSKHIVETTKYFSITVSFGSVKSPISMPCFMSH 425

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           ASIP  VR+ARGLTEDLVRISVGIEDVNDLI+DLD ALRTGPL
Sbjct: 426 ASIPAAVREARGLTEDLVRISVGIEDVNDLIADLDNALRTGPL 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571951|ref|XP_003554134.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Glycine max]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/223 (90%), Positives = 216/223 (96%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAH+HGAL+LVDNSIMSPVLS+PLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KE
Sbjct: 245 MAHSHGALVLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLEKE 304

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +YFLQNAEGSGLAPFDCW+CLRG+KTMALR+EKQQDNAQKIAEFLASHPRVK+VNYAGLP
Sbjct: 305 MYFLQNAEGSGLAPFDCWLCLRGIKTMALRIEKQQDNAQKIAEFLASHPRVKEVNYAGLP 364

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HPG +LHYSQAKGAGSVLSFLTGSLALSKH+VETTKYFSITVSFGSVKSLISMPCFMSH
Sbjct: 365 GHPGRDLHYSQAKGAGSVLSFLTGSLALSKHIVETTKYFSITVSFGSVKSLISMPCFMSH 424

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           ASIP  VR+ARGLTEDLVRISVGIEDVNDLI+DL  ALRTGPL
Sbjct: 425 ASIPAAVREARGLTEDLVRISVGIEDVNDLIADLGNALRTGPL 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441258|ref|XP_002274313.1| PREDICTED: cystathionine beta-lyase, chloroplastic [Vitis vinifera] gi|297739922|emb|CBI30104.3| unnamed protein product [Vitis vinifera]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/222 (90%), Positives = 213/222 (95%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAH HGALLLVDNSIMSPVLS+PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE LAK+
Sbjct: 244 MAHTHGALLLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDVMAGVLAVKGESLAKD 303

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           LYFLQNAEGSGLAPFDCWICLRG+KTMALRVEKQQ+NAQKIAEFL+SHPRVKKVNYAGLP
Sbjct: 304 LYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQENAQKIAEFLSSHPRVKKVNYAGLP 363

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +HPG  LHYSQAKGAGSVLSFLTGSL  SK++VETTKYFSITVSFGSVKSLISMPCFMSH
Sbjct: 364 DHPGRSLHYSQAKGAGSVLSFLTGSLEFSKYIVETTKYFSITVSFGSVKSLISMPCFMSH 423

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP 222
           ASIP  VR+ARGLTEDLVRISVGIED+NDLI+DLD ALRTGP
Sbjct: 424 ASIPAAVREARGLTEDLVRISVGIEDINDLIADLDYALRTGP 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636979|gb|ACU18822.1| unknown [Glycine max]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/223 (90%), Positives = 215/223 (96%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAH+HGAL+LVDNSIMSPVLS+PLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KE
Sbjct: 1   MAHSHGALVLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLGKE 60

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +YFLQNAEGSGLAPFDCW+CLRG+KTMALR+EKQQDNAQKIAEFLASHPRVK+VNYAGLP
Sbjct: 61  MYFLQNAEGSGLAPFDCWLCLRGIKTMALRIEKQQDNAQKIAEFLASHPRVKEVNYAGLP 120

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HPG +LHYSQAKGAGSVLSFLTGSLALSKH+VETTKYFSITVSFGSVKSLISMPCFMSH
Sbjct: 121 GHPGRDLHYSQAKGAGSVLSFLTGSLALSKHIVETTKYFSITVSFGSVKSLISMPCFMSH 180

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           ASIP  VR+ARGLTEDLVRISVGIEDVND I+DL  ALRTGPL
Sbjct: 181 ASIPAAVREARGLTEDLVRISVGIEDVNDFIADLGNALRTGPL 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519446|ref|XP_004166746.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/222 (89%), Positives = 213/222 (95%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAH HGAL+LVDNSI+SPVLSRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKE
Sbjct: 187 MAHKHGALVLVDNSILSPVLSRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKE 246

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           LYFLQNAEGSGLAPFDCWICLRG+KT+ALRVEKQQ+NAQKIAEFL +HPRVKKV YAGLP
Sbjct: 247 LYFLQNAEGSGLAPFDCWICLRGIKTLALRVEKQQENAQKIAEFLYTHPRVKKVYYAGLP 306

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HPG  LHYSQAKGAG+VLSFLTGSLALSKH+VE+TKYFSITVSFGSVKSLISMPCFMSH
Sbjct: 307 THPGRSLHYSQAKGAGAVLSFLTGSLALSKHIVESTKYFSITVSFGSVKSLISMPCFMSH 366

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP 222
           ASIP  VR+ARGLTEDL+RISVGIEDVNDLI+DLD ALRTGP
Sbjct: 367 ASIPAAVREARGLTEDLIRISVGIEDVNDLIADLDNALRTGP 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452983|ref|XP_004144238.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/222 (89%), Positives = 213/222 (95%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAH HGAL+LVDNSI+SPVLSRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKE
Sbjct: 237 MAHKHGALVLVDNSILSPVLSRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKE 296

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           LYFLQNAEGSGLAPFDCWICLRG+KT+ALRVEKQQ+NAQKIAEFL +HPRVKKV YAGLP
Sbjct: 297 LYFLQNAEGSGLAPFDCWICLRGIKTLALRVEKQQENAQKIAEFLYTHPRVKKVYYAGLP 356

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HPG  LHYSQAKGAG+VLSFLTGSLALSKH+VE+TKYFSITVSFGSVKSLISMPCFMSH
Sbjct: 357 THPGRSLHYSQAKGAGAVLSFLTGSLALSKHIVESTKYFSITVSFGSVKSLISMPCFMSH 416

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP 222
           ASIP  VR+ARGLTEDL+RISVGIEDVNDLI+DLD ALRTGP
Sbjct: 417 ASIPAAVREARGLTEDLIRISVGIEDVNDLIADLDNALRTGP 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226500444|ref|NP_001148100.1| LOC100281708 [Zea mays] gi|194703020|gb|ACF85594.1| unknown [Zea mays] gi|195615792|gb|ACG29726.1| cystathionine gamma-synthase [Zea mays] gi|413952959|gb|AFW85608.1| cystathionine gamma-synthase isoform 1 [Zea mays] gi|413952960|gb|AFW85609.1| cystathionine gamma-synthase isoform 2 [Zea mays]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/223 (87%), Positives = 214/223 (95%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH+HGAL+LVDNSIMSPVLSRP+ELGADIVMHSATKFIAGHSD+MAG+LAVKGE LAKE
Sbjct: 248 IAHSHGALVLVDNSIMSPVLSRPIELGADIVMHSATKFIAGHSDLMAGILAVKGESLAKE 307

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + FLQNAEGSGLAPFDCW+CLRG+KTMALRVEKQQ NAQKIAEFLASHPRVK+VNYAGLP
Sbjct: 308 VGFLQNAEGSGLAPFDCWLCLRGIKTMALRVEKQQANAQKIAEFLASHPRVKQVNYAGLP 367

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +HPG  LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS+TVSFGSVKSLIS+PCFMSH
Sbjct: 368 DHPGRALHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSVTVSFGSVKSLISLPCFMSH 427

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           ASIP  VR+ RGLT+DLVRISVGIEDV DLI+DLD+ALRTGP+
Sbjct: 428 ASIPASVREERGLTDDLVRISVGIEDVEDLIADLDRALRTGPV 470

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255689401|gb|ACU30052.1| cystathionine beta-lyase, partial [Glycine max]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/212 (92%), Positives = 205/212 (96%)

Query: 12  DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG 71
           DNSIMSPVLSRPLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KELYFLQNAEGSG
Sbjct: 1   DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLGKELYFLQNAEGSG 60

Query: 72  LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 131
           LAPFDCW+CLRG+KTMALR+EKQQDNAQKIAEFLASHPRVKKVNYAGLP HPG +LHYSQ
Sbjct: 61  LAPFDCWLCLRGIKTMALRIEKQQDNAQKIAEFLASHPRVKKVNYAGLPGHPGRDLHYSQ 120

Query: 132 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR 191
           AKGAGSVLSFLTGSL LSKH+VETTKYFSITVSFGSVKSLISMPCFMSHASIP  VR+AR
Sbjct: 121 AKGAGSVLSFLTGSLELSKHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREAR 180

Query: 192 GLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           GLTEDLVRISVGIEDVNDLI+DLD ALRTGPL
Sbjct: 181 GLTEDLVRISVGIEDVNDLIADLDNALRTGPL 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326511829|dbj|BAJ92059.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/222 (87%), Positives = 214/222 (96%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH+HGAL+LVDNSIMSPVLSRP+ELGADIVMHSATKFIAGHSD+MAG+LAVKGE LAKE
Sbjct: 249 IAHSHGALVLVDNSIMSPVLSRPIELGADIVMHSATKFIAGHSDLMAGILAVKGESLAKE 308

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + FLQNAEGSGLAPFDCW+CLRG+KTMALRVEKQQDNAQKIAEFLASHP+VKKVNYAGLP
Sbjct: 309 IAFLQNAEGSGLAPFDCWLCLRGIKTMALRVEKQQDNAQKIAEFLASHPKVKKVNYAGLP 368

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +HPG  LHYSQAKGAGSVLSFLTGSL+LSKHVVETTKYF++TVSFGSVKSLIS+PCFMSH
Sbjct: 369 DHPGRSLHYSQAKGAGSVLSFLTGSLSLSKHVVETTKYFNVTVSFGSVKSLISLPCFMSH 428

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP 222
           ASIP  VR+ RGLT+DLVRISVGIEDV+DLI+DLD ALR+GP
Sbjct: 429 ASIPSLVREERGLTDDLVRISVGIEDVDDLIADLDYALRSGP 470

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2080605	464	CBL "cystathionine beta-lyase"	1.0	0.480	0.865	1.8e-101
ASPGD|ASPL0000069608	458	metG [Emericella nidulans (tax	0.937	0.456	0.563	3.9e-60
UNIPROTKB|G4MSN2	454	MGG_07074 "Cystathionine beta-	0.950	0.466	0.546	7.3e-59
CGD|CAL0004561	404	orf19.2092 [Candida albicans (	0.973	0.537	0.544	1.9e-58
POMBASE|SPCC11E10.01	390	SPCC11E10.01 "cystathionine be	0.955	0.546	0.546	5.9e-57
DICTYBASE|DDB_G0269122	387	cysA "cystathionine gamma-lyas	0.968	0.558	0.502	6.1e-55
TIGR_CMR|GSU_0944	377	GSU_0944 "cystathionine beta-l	0.973	0.575	0.470	6.3e-53
UNIPROTKB|Q81LL6	377	BAS4268 "Cys/Met metabolism PL	0.977	0.578	0.486	8e-53
TIGR_CMR|BA_4600	377	BA_4600 "cystathionine beta-ly	0.977	0.578	0.486	8e-53
TIGR_CMR|GSU_0945	378	GSU_0945 "cystathionine beta-l	0.977	0.576	0.463	1e-52

TAIR|locus:2080605 CBL "cystathionine beta-lyase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 193/223 (86%), Positives = 212/223 (95%)

Query:     1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
             MAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE
Sbjct:   242 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE 301

Query:    61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
             +YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP
Sbjct:   302 VYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLP 361

Query:   121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
             +HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSH
Sbjct:   362 DHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 421

Query:   181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
             ASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD A +T PL
Sbjct:   422 ASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 464

GO:0003824 "catalytic activity" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA;IMP

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=TAS

ASPGD|ASPL0000069608 metG [Emericella nidulans (taxid:162425)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 119/211 (56%), Positives = 161/211 (76%)

Query:     8 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA 67
             L++VDN++MSP+L  PLELGAD+V  S TK+++GH DVMAGV+AV    L + LYF  NA
Sbjct:   201 LVIVDNTMMSPLLLSPLELGADVVYESGTKYLSGHHDVMAGVIAVNDPALGERLYFPINA 260

Query:    68 EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL 127
              G GL+PFD W+ +RGVKT+ +R+++QQ NAQ+IAEFL SH    KV Y GL  HP ++L
Sbjct:   261 SGCGLSPFDSWLLMRGVKTLKVRMDQQQANAQRIAEFLESHGF--KVRYPGLRSHPQYDL 318

Query:   128 HYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV 187
             H+S A+GAG+VLSF TG +++S+ +V   K ++I+VSFG V SLIS+PC MSHASI  + 
Sbjct:   319 HHSMARGAGAVLSFETGDVSVSERIVANAKLWAISVSFGCVNSLISLPCRMSHASIDAKT 378

Query:   188 RQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
             R+ R + EDL+R+ VGIEDV+DLI DL +A+
Sbjct:   379 RKERAMPEDLIRLCVGIEDVDDLIDDLRRAV 409

GO:0004121 "cystathionine beta-lyase activity" evidence=RCA;IMP;IDA

GO:0006555 "methionine metabolic process" evidence=RCA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

UNIPROTKB|G4MSN2 MGG_07074 "Cystathionine beta-lyase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 117/214 (54%), Positives = 160/214 (74%)

Query:     7 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 66
             AL++VDN+++SP+L  PL+LGADIV  S TK+++GH D+M+G++A     LA  +YF  N
Sbjct:   208 ALVVVDNTMLSPMLCNPLDLGADIVYESGTKYLSGHHDIMSGIVACNDAALADRMYFTVN 267

Query:    67 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
             A G GL+P D ++ +RG+KT+A+R+EKQQ NAQ+IAEFL SH    +V Y GL  HP ++
Sbjct:   268 ATGCGLSPNDSFLLMRGIKTLAVRMEKQQANAQRIAEFLESHGF--RVRYPGLKSHPQYD 325

Query:   127 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE 186
             LH+S A+GAG+VLSF TG   LS+ +VE  + ++I+VSFG V SLISMPC MSHASI  +
Sbjct:   326 LHWSMARGAGAVLSFETGDAELSQRIVEAARLWAISVSFGCVNSLISMPCQMSHASIDAK 385

Query:   187 VRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 220
              R+ R + ED++R+ VGIEDV DLI DL +AL T
Sbjct:   386 TRKERQMPEDIIRLCVGIEDVQDLIDDLSRALVT 419

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0004561 orf19.2092 [Candida albicans (taxid:5476)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 122/224 (54%), Positives = 159/224 (70%)

Query:     3 HAHGA----LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 58
             HAH A    +++ DN++MSPVL  PL+LG DI   SATK++ GH D+MAGV+A +   LA
Sbjct:   163 HAHKANRDIVVVFDNTMMSPVLMTPLDLGVDIQYESATKYLNGHHDIMAGVIATRSSSLA 222

Query:    59 KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
             ++LY++ N+ G GL+PFDCW+  RG+KT+A+RVEKQQ N  +IA+FL +     KV Y G
Sbjct:   223 EQLYYIINSTGCGLSPFDCWLLSRGLKTLAIRVEKQQQNCIRIAKFLENIGF--KVRYPG 280

Query:   119 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
             L  HP +ELH S   G G+VLSF TGS+ LS+ +VE T  F I VSFG V SLISMPC M
Sbjct:   281 LKSHPQYELHSSMCSGYGAVLSFETGSVRLSEKIVENTDIFGIAVSFGCVNSLISMPCKM 340

Query:   179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL-RTG 221
             SHASI  + R+ R   EDL+R+ +GIE+ +DLI DL KAL R+G
Sbjct:   341 SHASIDAKTREEREFPEDLIRLCIGIENCDDLIDDLTKALLRSG 384

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA

POMBASE|SPCC11E10.01 SPCC11E10.01 "cystathionine beta-lyase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 118/216 (54%), Positives = 162/216 (75%)

Query:     4 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF 63
             A  ALL++DN+++SPVL  PL+ G DIV  SATK+++GH D+M GV+A K + +AK ++F
Sbjct:   169 AKDALLVMDNTMLSPVLCNPLDFGYDIVYESATKYLSGHHDLMGGVIATKSDEIAKSVFF 228

Query:    64 LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL-PEH 122
               NA G+ +APF+C++ LRG+KTM LRVE+ Q NA +IA+FL S  +  +VN+ GL P+ 
Sbjct:   229 NINAMGAAMAPFECFLLLRGIKTMGLRVERAQQNAIEIAKFLKS--KGLQVNFPGLDPDA 286

Query:   123 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS 182
                 + YS A+G G+V+S  TG + +SK +V TTK F I+VSFG+V SLISMP +MSHAS
Sbjct:   287 KSTAIFYSFARGPGAVMSVFTGDVEVSKTIVNTTKLFEISVSFGAVNSLISMPAYMSHAS 346

Query:   183 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
             I  EVR ARGL+EDL+RI VGIE+V+DL +DL+ AL
Sbjct:   347 IKKEVRDARGLSEDLIRICVGIENVDDLKADLENAL 382

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005777 "peroxisome" evidence=ISS

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=IC

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

DICTYBASE|DDB_G0269122 cysA "cystathionine gamma-lyase" [Dictyostelium discoideum (taxid:44689)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 109/217 (50%), Positives = 151/217 (69%)

Query:     3 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY 62
             H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I GHSD + GVLA   + L  +L 
Sbjct:   168 HSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLK 227

Query:    63 FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 122
             FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q NA  I  FL  HP+V++V Y GLP H
Sbjct:   228 FLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSH 287

Query:   123 PGHELHYSQAKG-AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 181
             P HE+   Q KG  G V+ F+ GS+  S+  +E  K F++  S G V+SLI +P  M+HA
Sbjct:   288 PQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHA 347

Query:   182 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
             S+P E R   G+++ L+R+SVGIED+NDL++D+ +AL
Sbjct:   348 SVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384

GO:0005615 "extracellular space" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080146 "L-cysteine desulfhydrase activity" evidence=IEA

GO:0044540 "L-cystine L-cysteine-lyase (deaminating)" evidence=IEA

GO:0004123 "cystathionine gamma-lyase activity" evidence=IEA;ISS

GO:0006534 "cysteine metabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|GSU_0944 GSU_0944 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 102/217 (47%), Positives = 156/217 (71%)

Query:     1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
             +    G L +VDN+ ++P L RPL+LGADI ++S TK+++GH+D ++G++ VK   LA+ 
Sbjct:   159 LCRERGLLCIVDNTFLTPYLLRPLDLGADITVYSGTKYLSGHNDTVSGLVVVKEPALAER 218

Query:    61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
             +YFLQN+ G+ L P D W+ +RG+KT+++R+++QQ+NA +IAE+LA HPRV +V Y GLP
Sbjct:   219 VYFLQNSVGAVLGPQDAWLTIRGMKTLSVRLDRQQENAGRIAEWLARHPRVPRVFYPGLP 278

Query:   121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
              HPGHEL   QA+G G++++F     AL + ++  T+  S   S G V++LI+ P   +H
Sbjct:   279 GHPGHELLARQARGFGAMIAFEVDDKALVERLLLKTELISFAESLGGVETLITFPQVQTH 338

Query:   181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 217
             A IP EVR+  G+ + L+R+SVGIED +DLI+DL +A
Sbjct:   339 ADIPPEVRERLGINDVLLRLSVGIEDADDLIADLSRA 375

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 106/218 (48%), Positives = 153/218 (70%)

Query:     1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
             +A   G L ++DN+ M+P    P+ LGADIV+HSATK++ GHSDV+AG++ V   +LA++
Sbjct:   159 LAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPQLAED 218

Query:    61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
             L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ + N++ IAEFL +HP+V KV Y GL 
Sbjct:   219 LHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVYYPGLA 278

Query:   121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
              H  HEL   QA G G+++SF   S      V+E  +YF++  S G+V+SLIS+P  M+H
Sbjct:   279 SHQNHELATEQANGFGAIISFDVDSEETLNKVLERLQYFTLAESLGAVESLISIPSQMTH 338

Query:   181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
             ASIP + R+  G+T+ L+RISVGIED  DLI DL +AL
Sbjct:   339 ASIPADRRKELGITDTLIRISVGIEDGEDLIEDLAQAL 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 106/218 (48%), Positives = 153/218 (70%)

Query:     1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
             +A   G L ++DN+ M+P    P+ LGADIV+HSATK++ GHSDV+AG++ V   +LA++
Sbjct:   159 LAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPQLAED 218

Query:    61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
             L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ + N++ IAEFL +HP+V KV Y GL 
Sbjct:   219 LHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVYYPGLA 278

Query:   121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
              H  HEL   QA G G+++SF   S      V+E  +YF++  S G+V+SLIS+P  M+H
Sbjct:   279 SHQNHELATEQANGFGAIISFDVDSEETLNKVLERLQYFTLAESLGAVESLISIPSQMTH 338

Query:   181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
             ASIP + R+  G+T+ L+RISVGIED  DLI DL +AL
Sbjct:   339 ASIPADRRKELGITDTLIRISVGIEDGEDLIEDLAQAL 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_0945 GSU_0945 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 101/218 (46%), Positives = 151/218 (69%)

Query:     1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
             +A   GA+ LVDN+ M+P L RPL+LG D+V+HS TKF+ GHSDV+ G   V+   L + 
Sbjct:   159 LARERGAITLVDNTFMTPYLQRPLDLGCDVVLHSGTKFLNGHSDVVCGFAVVRDPELGQR 218

Query:    61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
             + F+QNA G+ L P D W+ LRG+KT+ +R+E+ Q  A KIA +LA   RV +V Y GLP
Sbjct:   219 IRFIQNAFGAILGPQDSWLVLRGIKTLRVRMEESQAGAVKIANWLAGEKRVSRVFYPGLP 278

Query:   121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
             +HPGH++H  Q+ G G+VLSF   ++  ++ ++E  +  +  VS G V+S+IS P  MSH
Sbjct:   279 DHPGHDIHGRQSSGPGAVLSFTLDTVETTRRLLEGMRLAAFAVSLGGVESIISYPARMSH 338

Query:   181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
             A++P   R ARG+ + LVR+SVG+ED +DL++++D+ +
Sbjct:   339 AAMPPAERAARGIGDTLVRLSVGLEDADDLLAEMDRLI 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P53780	METC_ARATH	4, ., 4, ., 1, ., 8	0.8654	1.0	0.4806	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00000669001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (403 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003836001	SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (765 aa)	•			•		•	•		0.978
	GSVIVG00017439001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (767 aa)	•			•		•	•		0.977
	GSVIVG00017199001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (280 aa)	•					•	•		0.963
	GSVIVG00031113001	RecName- Full=Cysteine synthase; EC=2.5.1.47; (325 aa)	•					•	•		0.958
	GSVIVG00034691001	RecName- Full=Cysteine synthase; EC=2.5.1.47; (305 aa)	•					•	•		0.958
	GSVIVG00031107001	RecName- Full=Cysteine synthase; EC=2.5.1.47; (323 aa)	•					•	•		0.957
	GSVIVG00031109001	RecName- Full=Cysteine synthase; EC=2.5.1.47; (323 aa)	•					•	•		0.955
	GSVIVG00031096001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (323 aa)	•					•	•		0.955
	GSVIVG00021002001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (500 aa)	•		•			•	•	•	0.949
	GSVIVG00026889001	RecName- Full=Cysteine synthase; EC=2.5.1.47; (371 aa)	•					•	•		0.944

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
PLN02509	464	PLN02509, PLN02509, cystathionine beta-lyase	1e-163
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	1e-135
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	1e-119
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	1e-112
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	1e-104
PRK07671	377	PRK07671, PRK07671, cystathionine beta-lyase; Prov	2e-91
PRK08064	390	PRK08064, PRK08064, cystathionine beta-lyase; Prov	1e-90
PRK07811	388	PRK07811, PRK07811, cystathionine gamma-synthase;	1e-81
PRK06176	380	PRK06176, PRK06176, cystathionine gamma-synthase/c	2e-77
PRK08133	390	PRK08133, PRK08133, O-succinylhomoserine sulfhydry	1e-75
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	8e-75
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	1e-72
PRK08247	366	PRK08247, PRK08247, cystathionine gamma-synthase;	1e-70
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	3e-70
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	1e-68
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	2e-68
PRK08249	398	PRK08249, PRK08249, cystathionine gamma-synthase;	2e-67
PRK07269	364	PRK07269, PRK07269, cystathionine gamma-synthase;	7e-67
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	1e-66
PRK06234	400	PRK06234, PRK06234, methionine gamma-lyase; Provis	6e-65
PRK06767	386	PRK06767, PRK06767, methionine gamma-lyase; Provis	7e-65
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	5e-64
PRK08776	405	PRK08776, PRK08776, cystathionine gamma-synthase;	6e-63
PRK06460	376	PRK06460, PRK06460, hypothetical protein; Provisio	8e-63
PRK07503	403	PRK07503, PRK07503, methionine gamma-lyase; Provis	4e-61
TIGR01326	418	TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase	2e-59
PRK07810	403	PRK07810, PRK07810, O-succinylhomoserine sulfhydry	2e-58
PRK07049	427	PRK07049, PRK07049, methionine gamma-lyase; Valida	6e-57
PRK07812	436	PRK07812, PRK07812, O-acetylhomoserine aminocarbox	6e-56
PRK05994	427	PRK05994, PRK05994, O-acetylhomoserine aminocarbox	2e-55
PRK08134	433	PRK08134, PRK08134, O-acetylhomoserine aminocarbox	2e-54
PRK07504	398	PRK07504, PRK07504, O-succinylhomoserine sulfhydry	7e-53
PRK07582	366	PRK07582, PRK07582, cystathionine gamma-lyase; Val	1e-52
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	3e-51
PRK06434	384	PRK06434, PRK06434, cystathionine gamma-lyase; Val	2e-50
PRK06084	425	PRK06084, PRK06084, O-acetylhomoserine aminocarbox	3e-47
PRK05613	437	PRK05613, PRK05613, O-acetylhomoserine aminocarbox	4e-44
PRK05968	389	PRK05968, PRK05968, hypothetical protein; Provisio	2e-39
PRK09028	394	PRK09028, PRK09028, cystathionine beta-lyase; Prov	4e-39
PRK05939	397	PRK05939, PRK05939, hypothetical protein; Provisio	7e-38
PRK05967	395	PRK05967, PRK05967, cystathionine beta-lyase; Prov	1e-37
PRK07050	394	PRK07050, PRK07050, cystathionine beta-lyase; Prov	3e-36
TIGR01324	377	TIGR01324, cysta_beta_ly_B, cystathionine beta-lya	2e-35
PRK06702	432	PRK06702, PRK06702, O-acetylhomoserine aminocarbox	2e-33
PRK08114	395	PRK08114, PRK08114, cystathionine beta-lyase; Prov	2e-31
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	8e-20

>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase

 Score =  459 bits (1182), Expect = e-163
 Identities = 195/223 (87%), Positives = 213/223 (95%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE
Sbjct: 242 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE 301

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP
Sbjct: 302 VYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLP 361

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSH
Sbjct: 362 DHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 421

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           ASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD A RTGPL
Sbjct: 422 ASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFRTGPL 464

Length = 464

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score =  384 bits (988), Expect = e-135
 Identities = 171/223 (76%), Positives = 196/223 (87%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAHA  AL++VDN++MSP+L  PLELGADIV HSATKF+AGHSDVMAGVLAVKGE +AK+
Sbjct: 156 MAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKK 215

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +YFLQN+ GSGLAPFDCW+ LRG+KT+A+R+EKQQ+NA+ IA FL++HPRVKKV YAGLP
Sbjct: 216 VYFLQNSTGSGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLP 275

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HPG  LH+SQAKGAGSVLSF TGS+ALSK +VE TK FSITVSFGSV SLISMPCFMSH
Sbjct: 276 SHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSVNSLISMPCFMSH 335

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           ASIP EVR+ RGL EDLVR+SVGIEDV+DLISDLD A  T P 
Sbjct: 336 ASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAFVTAPA 378

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score =  343 bits (881), Expect = e-119
 Identities = 130/220 (59%), Positives = 164/220 (74%), Gaps = 2/220 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAK 59
           +A  HGAL++VDN+  SP L RPLELGADIV+HSATK+I GHSDV+ GV+ V G E LAK
Sbjct: 162 IAKKHGALVVVDNTFASPYLQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAK 221

Query: 60  ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
            L FLQNA G+ L+PFD W+ LRG+KT+ LR+E+ Q+NA K+AEFL  HP+V+KV Y GL
Sbjct: 222 RLRFLQNATGAVLSPFDAWLLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGL 281

Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
           P HPGHEL   Q  G G +LSF L G L  +   ++  K FS+  S G V+SLIS P  M
Sbjct: 282 PSHPGHELAKKQMSGFGGMLSFELKGGLEAASKFLDNLKLFSLAESLGGVESLISHPATM 341

Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           +HASIP E R+A G+T+ L+R+SVGIEDV+DLI+DL +AL
Sbjct: 342 THASIPPEEREAAGITDGLIRLSVGIEDVDDLIADLKQAL 381

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score =  324 bits (833), Expect = e-112
 Identities = 122/220 (55%), Positives = 158/220 (71%), Gaps = 1/220 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH HGALL+VDN+  +P L RPLELGADIV+HSATK+I GHSDV+AGV+   GE L + 
Sbjct: 150 LAHEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQR 209

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           L FL+ A G+ L+PFD W+ LRG+KT+ LR+E+  +NA K+AEFL  HP+V++V Y GLP
Sbjct: 210 LRFLRLALGTILSPFDAWLLLRGLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLP 269

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
            HP HEL   Q  G G V SF L G L  +K  +   K FS+ VS G V+SL+  P  M+
Sbjct: 270 SHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESLVEHPASMT 329

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           H+ +P E R A G+T  LVR+SVGIEDV DLI+DL++AL+
Sbjct: 330 HSQLPPEERAAAGITPGLVRLSVGIEDVEDLIADLEQALK 369

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score =  305 bits (784), Expect = e-104
 Identities = 120/218 (55%), Positives = 159/218 (72%), Gaps = 1/218 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           A A+GAL++VDN+  +PVL RPLELGADIV+HSATK++ GHSDV+ GV+    E L + L
Sbjct: 175 AKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELL 234

Query: 62  YFLQNAE-GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +F Q A  G+ L+PFD W+ LRG++T+ALR+E+  +NA KIAEFLA HP+VKKV Y GLP
Sbjct: 235 FFAQRANTGAVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLP 294

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HPGHEL   Q  G G + SF   +   +K  +++ K F +  S G V+SLIS P  M+H
Sbjct: 295 SHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLFKLAESLGGVESLISHPATMTH 354

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           ASIP+E R   G+T+ LVR+SVG+EDV DLI+DL++AL
Sbjct: 355 ASIPLEERAKAGITDGLVRLSVGLEDVEDLIADLEQAL 392

Length = 396

>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional

 Score =  273 bits (699), Expect = 2e-91
 Identities = 111/218 (50%), Positives = 154/218 (70%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A   G L +VDN+ M+P    P+ LGADIV+HSATK++ GHSDV+AG++ V    LA++
Sbjct: 159 IAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAED 218

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           L+F+QN+ G  L P D W+ LRG+KT+ +R+E+ + N++ IAEFL +HP V KV Y GLP
Sbjct: 219 LHFVQNSTGGILGPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLP 278

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HP HEL   QA G G ++SF  GS   +  V+E  +YF++  S G+V+SLIS+P  M+H
Sbjct: 279 SHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQYFTLAESLGAVESLISIPSQMTH 338

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           ASIP + R+  G+T+ L+RISVGIED  DLI DL +AL
Sbjct: 339 ASIPADRRKELGITDGLIRISVGIEDGEDLIEDLAQAL 376

Length = 377

>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional

 Score =  271 bits (694), Expect = 1e-90
 Identities = 109/218 (50%), Positives = 154/218 (70%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A A G L  VDN+ ++P+L +PL+LGAD+V+HSATKF+AGHSDV+AG+  VK E LA++
Sbjct: 163 LAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQK 222

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           LYFLQN+ G+ L   DCW+ LRG+KT+ +R+E   + A KIA +L  HP+V+ V Y GL 
Sbjct: 223 LYFLQNSFGAVLGVQDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQ 282

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            H G ++  SQA  AG+VLSF   S    +  V   K     VS G+V+S++S P  MSH
Sbjct: 283 THLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSH 342

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           A++P E R  RG+T+ L+R+SVG+E+V+DLI+D ++AL
Sbjct: 343 AAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQAL 380

Length = 390

>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional

 Score =  248 bits (634), Expect = 1e-81
 Identities = 105/222 (47%), Positives = 144/222 (64%), Gaps = 10/222 (4%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH  GA ++VDN+  SP L +PL LGAD+V+HS TK+I GHSDV+ G L    E L + 
Sbjct: 171 LAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEA 230

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
             FLQN  G+   PFD ++ LRG+KT+A+R+++  +NA+ +AEFLA HP V  V Y GLP
Sbjct: 231 FAFLQNGAGAVPGPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLP 290

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
            HPGHE+   Q +G G ++S  L G    ++     TK F++  S G V+SLI  P  M+
Sbjct: 291 SHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMT 350

Query: 180 HASI---PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           HAS     +EV       +DLVR+SVGIEDV DL++DL++AL
Sbjct: 351 HASTAGSQLEV------PDDLVRLSVGIEDVADLLADLEQAL 386

Length = 388

>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated

 Score =  237 bits (605), Expect = 2e-77
 Identities = 106/218 (48%), Positives = 143/218 (65%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A  HG L +VDN+  +P    PL LGADIV+HS TK++ GHSDV+AG++    E LA+E
Sbjct: 159 VAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQE 218

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + F QNA G  L P D W+  RG+KT+ LR+E  Q NA  +AEFL  HP+V+KV Y GLP
Sbjct: 219 IAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLP 278

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HP HEL   Q +G   +LSF   + + +   VE+ K F +  S G V+SL+ +P FM+H
Sbjct: 279 THPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGESLGGVESLVGIPAFMTH 338

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           A IP E R+A G+ + LVR+SVGIE   DL+ DL++A 
Sbjct: 339 ACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAF 376

Length = 380

>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated

 Score =  232 bits (595), Expect = 1e-75
 Identities = 94/219 (42%), Positives = 142/219 (64%), Gaps = 2/219 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           AHA GALL+VDN   +P L +PL+LGAD+V+HSATK++ G   V+ G +    E + +  
Sbjct: 172 AHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVF 231

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
            FL+ A G  L+PF+ W+ L+G++T++LR+E    NA  +AE+L +HP V++V Y GLP 
Sbjct: 232 GFLRTA-GPTLSPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPS 290

Query: 122 HPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           HP HEL   Q KG G+++SF + G    +  V++ T+  SIT + G  K+ I+ P   +H
Sbjct: 291 HPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLISITANLGDTKTTITHPATTTH 350

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
             +  E R A G+TE L+R++VG+EDV D+ +DL + L 
Sbjct: 351 GRLSPEARAAAGITEGLIRVAVGLEDVADIKADLARGLA 389

Length = 390

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score =  230 bits (589), Expect = 8e-75
 Identities = 99/220 (45%), Positives = 147/220 (66%), Gaps = 1/220 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A A GA+++VDN+ +SP L  PL LGAD+V+HS TK++ GHSDV+AG +  K  ++A+E
Sbjct: 161 LAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEE 220

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           L +  N  G     FD ++ LRG++T+  R+  QQ NAQ I E+L + P VKK+ Y GLP
Sbjct: 221 LAWWANNLGVTGGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLP 280

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
           +HPGHE+   Q KG G++LSF L G     +  +     F++  S G V+SLI+ P  M+
Sbjct: 281 DHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHPATMT 340

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           HA++  E R   G+++ L+R+SVG+ED +DLI+DL++ LR
Sbjct: 341 HAAMGPEARAEAGISDTLLRLSVGLEDADDLIADLEQGLR 380

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score =  225 bits (574), Expect = 1e-72
 Identities = 89/218 (40%), Positives = 137/218 (62%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AHA GA ++VDN   +P+L +PL+LGAD+V++SATK I G   V+ G +    E + + 
Sbjct: 164 LAHAAGAKVVVDNVFATPLLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEP 223

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +  L    G  ++PF+ W+ L+G++T+A+RV+ Q  +A  IAE+L  HP V+ V Y GLP
Sbjct: 224 VQKLLRHTGPAMSPFNAWVLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQWVYYPGLP 283

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
            HP HEL   Q  G G+V++F       +  V++  +   I+ + G  KS I+ P   +H
Sbjct: 284 SHPQHELAKRQMSGGGTVVTFDLDCRQAAFKVLDAMRLVDISNNLGDAKSTITHPATTTH 343

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
             +  E R A G+ + LVR+SVG+EDV+DLI+D+D+AL
Sbjct: 344 RRMGPEERAAAGIGDGLVRLSVGLEDVDDLIADIDRAL 381

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed

 Score =  219 bits (559), Expect = 1e-70
 Identities = 95/218 (43%), Positives = 134/218 (61%), Gaps = 16/218 (7%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A  HG LL+VDN+  +PVL RPLE GADIV+HSATK++ GH+DV+AG++  KG+ L + 
Sbjct: 161 IAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCER 220

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           L + QNA G+ L+PFD W+ +RG+KT+ALR+ + ++NA+ IA FL   P V  V Y    
Sbjct: 221 LAYYQNAAGAVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYP--- 277

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
                        G G +LSF           +++ K  +   S G V+S I+ P   +H
Sbjct: 278 -------------GRGGMLSFRLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTH 324

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           A IP E+R A G+   L+R SVGIE+V DLI+DL +A 
Sbjct: 325 ADIPEEIRIANGVCNRLLRFSVGIENVEDLIADLKQAF 362

Length = 366

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score =  219 bits (559), Expect = 3e-70
 Identities = 97/221 (43%), Positives = 136/221 (61%), Gaps = 11/221 (4%)

Query: 6   GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ 65
           GA+L+VDN+  +P+L RPL  GAD V+HS TK+IAGH+DV+ GV         +EL+  +
Sbjct: 167 GAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWR 226

Query: 66  NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH 125
              G+ + PF+ ++ LRG+KT+ +R E+Q  NA  IAEFL+ HP+V +V Y GLP  P H
Sbjct: 227 RRLGTIMQPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYH 286

Query: 126 ELHYSQAKGA------GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
            +    AK        G V+SF + G        + + K    + S G V+SL + P   
Sbjct: 287 GV----AKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSLGGVESLATYPVKS 342

Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           + + IP E R+A G+TEDLVR+SVG+EDV DLI DLD+AL 
Sbjct: 343 AASPIPEEDRKALGITEDLVRLSVGLEDVEDLIEDLDQALG 383

Length = 385

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score =  215 bits (551), Expect = 1e-68
 Identities = 95/252 (37%), Positives = 141/252 (55%), Gaps = 34/252 (13%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL----------- 50
           AH HG  L+VDN+  +P L RP+E GADIV+HSATK+I GH   + GV+           
Sbjct: 173 AHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTAN 232

Query: 51  --------------AVKGERLAKELYFLQNAE-------GSGLAPFDCWICLRGVKTMAL 89
                          +          F+  A        G+ L+PF+ ++ L+G++T++L
Sbjct: 233 GRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSL 292

Query: 90  RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL-HYSQAKGAGSVLSF-LTGSLA 147
           R+E+  +NA K+AEFL +HP+V  VNY GL  HP H L      KGAG+VL+F + G   
Sbjct: 293 RMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYE 352

Query: 148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV 207
             K  ++  K FS   + G  +SL+  P   +H  +  E + A G+T DL+R+SVGIED+
Sbjct: 353 AGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGIEDI 412

Query: 208 NDLISDLDKALR 219
           +D+I+DL++AL 
Sbjct: 413 DDIIADLEQALE 424

Length = 426

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score =  213 bits (545), Expect = 2e-68
 Identities = 96/220 (43%), Positives = 136/220 (61%), Gaps = 1/220 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A   GA+ +VDN+ +SP L  PL LGAD+V+HS TK++ GHSDV+AGV+  K   +  E
Sbjct: 162 LAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTE 221

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           L +  N  G     FD ++ LRG++T+  R+E  Q NAQ I ++L + P VKK+ +  LP
Sbjct: 222 LAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLP 281

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
           E+ GHE+   Q KG G++LSF L G     +  +     F++  S G V+SLIS    M+
Sbjct: 282 ENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMT 341

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           HA +  E R A G++E L+RIS GIED  DLI+DL+   R
Sbjct: 342 HAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFR 381

Length = 386

>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional

 Score =  212 bits (541), Expect = 2e-67
 Identities = 89/218 (40%), Positives = 138/218 (63%), Gaps = 2/218 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           A   GAL++VDN+  +P+   PL LGAD+V+HSATKF++GH+D + GV     + L +++
Sbjct: 175 AKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGV-VCGSKELMEQV 233

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
           Y  +   G+ + P   ++ LRG+KT+ LRV +QQ++A  +A++L +HP+V+ V Y GL  
Sbjct: 234 YHYREINGATMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLET 293

Query: 122 HPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           HP HE+  +Q +G G +LSF L G +   K ++   +Y     + G+V+++       SH
Sbjct: 294 HPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSH 353

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
               +E R A G+ E LVRISVGIED  DLI+DL++A 
Sbjct: 354 VENTLEERAALGIPEGLVRISVGIEDTEDLIADLEQAF 391

Length = 398

>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed

 Score =  209 bits (534), Expect = 7e-67
 Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 16/217 (7%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           AHA GA ++VDN+  SP+  RP+ELGADIV+HSATK+++GH+DV+AGV+      L ++L
Sbjct: 162 AHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKL 221

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
           ++  N  G+ L+PFD ++ +RG+KT++LR+E+   NAQ++  FL   P VK+V Y G   
Sbjct: 222 FYNLNTTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGK-- 279

Query: 122 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 181
                         G ++SF         H++ + K F+   S G V+SLI+ P   +HA
Sbjct: 280 --------------GGMISFKVADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHA 325

Query: 182 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
            IP EVR + GLT+DL+R+S+GIED  DLI+DL +AL
Sbjct: 326 DIPAEVRHSYGLTDDLLRLSIGIEDARDLIADLKQAL 362

Length = 364

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score =  210 bits (535), Expect = 1e-66
 Identities = 94/219 (42%), Positives = 151/219 (68%), Gaps = 2/219 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-E 60
           AH+ G  ++VDN+  +P+L+ P+ LG D+V+HSATK+I GH DV+AG++  K E L +  
Sbjct: 170 AHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIR 229

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +  +++  GS ++PFD W+ LRG+KT+ +R+++  +NA K+AE+L SHP V+KV Y G  
Sbjct: 230 MVGIKDMTGSVISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFE 289

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
           +HPGH++   Q +  G +++F L G  A +K ++   K   + VS G  ++LI  P  M+
Sbjct: 290 DHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMT 349

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           HA +P E R+A G+T+ ++R+SVG+ED +DLI+DL +AL
Sbjct: 350 HAVVPKEEREAAGITDGMIRLSVGLEDADDLIADLKQAL 388

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional

 Score =  205 bits (524), Expect = 6e-65
 Identities = 91/223 (40%), Positives = 142/223 (63%), Gaps = 6/223 (2%)

Query: 1   MAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 58
           +AH +    L+ VDN+  +P + RPL+LGAD+V+HSATK++ GH DV+AG   V  E   
Sbjct: 174 IAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAG-FVVGKEEFI 232

Query: 59  KELYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY 116
            ++    +++  GS + PF+ ++ +RG+KT+ +R+EK   NA K+A+FL SHP V+KV Y
Sbjct: 233 NQVKLFGIKDMTGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYY 292

Query: 117 AGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMP 175
            GL     +EL   Q    G+++SF L G +   K V+   K  ++ VS G  ++LI  P
Sbjct: 293 PGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHP 352

Query: 176 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
             M+H+    E R+  G+++ LVR+SVG+EDV+D+I+DL +AL
Sbjct: 353 ASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIADLKQAL 395

Length = 400

>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional

 Score =  205 bits (522), Expect = 7e-65
 Identities = 95/219 (43%), Positives = 141/219 (64%), Gaps = 7/219 (3%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A  +G L++VDN+  SP L RPLELG D V+HSATK+I GH DV+AGV   K   LA++
Sbjct: 171 VAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEK 230

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +  ++   G  +APFD W+ LRG+KT+A+R+++  DNA+KI  FL +H  V+ V Y    
Sbjct: 231 IRPMRKDIGGIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWY---- 286

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
             P  EL   Q K  G V+SF + G    ++  +    + +I VS G  ++LI  P  M+
Sbjct: 287 --PEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMT 344

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           HA+IP E+RQ  G+ ++L+R+SVG+E   D++SDL++AL
Sbjct: 345 HAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQAL 383

Length = 386

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score =  203 bits (517), Expect = 5e-64
 Identities = 97/218 (44%), Positives = 139/218 (63%), Gaps = 1/218 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           A A GAL+ VDN+ ++PVL +PLELGAD V+HS TK+I GHSDV+ GVL  K +  A+EL
Sbjct: 164 AKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEEL 223

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
            +  N  G+   PFD ++ LRG++T+  R+   +++AQ+I  +L +   V  + +  LPE
Sbjct: 224 AWWGNCIGATGTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPE 283

Query: 122 HPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           HPGHE+   Q  G GS+LSF   GS    K  V+    FS+  S G V+SLI  P  M+H
Sbjct: 284 HPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGGVESLICHPASMTH 343

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
            ++  E     G+++ L+R+SVG+ED  DLI+DLD+A 
Sbjct: 344 RAMGEEALAEAGVSQQLLRLSVGLEDAQDLIADLDQAF 381

Length = 388

>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional

 Score =  200 bits (511), Expect = 6e-63
 Identities = 98/218 (44%), Positives = 138/218 (63%), Gaps = 1/218 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           AH  GAL +VDN+ +SP L +PLE GAD+V+HS TK+I GHSDV+ G +  +   L ++L
Sbjct: 171 AHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQL 230

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
            +  NA G   +PFD ++ LRG++T+  R+   Q+NA  IA  L  H  V +V Y GL  
Sbjct: 231 VWWANALGLTGSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLAS 290

Query: 122 HPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           HPGH L   Q KG G++LSF L G  A  +  V+  +YF++  S G V+SLI+ P  M+H
Sbjct: 291 HPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRYFTLAESLGGVESLIAHPASMTH 350

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           A++  E R A G+++ L+R+SVGIE   DL+ DL   L
Sbjct: 351 AAMTAEARAAAGISDGLLRLSVGIESAEDLLIDLRAGL 388

Length = 405

>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional

 Score =  199 bits (508), Expect = 8e-63
 Identities = 97/216 (44%), Positives = 143/216 (66%), Gaps = 2/216 (0%)

Query: 6   GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ 65
           G++L+VD +  +P+  +PLELGADIV+HSA+KF+AGH+DV+AG+ A  G+ L   +  ++
Sbjct: 160 GSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGK-LLNVIDQMR 218

Query: 66  NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH 125
              G+ L P   ++ LRG+KT+ +R++    NA++IAEFL  HP+V KV Y GL  H  +
Sbjct: 219 RTLGTSLDPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDY 278

Query: 126 ELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP 184
           E+     KG G VLSF + G    +  V+++ K      + G V S+IS P  MSH ++ 
Sbjct: 279 EIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSVISHPATMSHRTLS 338

Query: 185 VEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 220
           +E R+  G+T+ L+R+SVGIEDVNDLI DLD+AL T
Sbjct: 339 LEERKIVGITDSLLRLSVGIEDVNDLIEDLDRALST 374

Length = 376

>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional

 Score =  196 bits (499), Expect = 4e-61
 Identities = 95/221 (42%), Positives = 144/221 (65%), Gaps = 4/221 (1%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH  GA ++VDN+  +P L RPLELGAD+V+HSATK++ GH D+ AG L V G+ LA  
Sbjct: 175 IAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAG-LVVGGKALADR 233

Query: 61  --LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
             L  L++  G+ ++PFD ++ +RG+KT+ALR+++   +AQ +AE+LA HP V+ V+Y G
Sbjct: 234 IRLEGLKDMTGAVMSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPG 293

Query: 119 LPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
           LP    H L   Q    G +++F L G +A  +  +   + F+  VS G  +SL   P  
Sbjct: 294 LPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPAS 353

Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           M+H++   E R   G++E LVR+SVG+EDV D+++DL +AL
Sbjct: 354 MTHSTYTPEERAEHGISEGLVRLSVGLEDVADILADLAQAL 394

Length = 403

>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase

 Score =  192 bits (489), Expect = 2e-59
 Identities = 94/250 (37%), Positives = 139/250 (55%), Gaps = 33/250 (13%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------E 55
           AHAHG  L+VDN+  +P L RP++ GADIV+HSATK+I GH   + GV+   G       
Sbjct: 168 AHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANG 227

Query: 56  RLAK------------------ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALR 90
           R                        F+  A        G+ L+PF+ ++ L+G++T++LR
Sbjct: 228 RFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLR 287

Query: 91  VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA-KGAGSVLSF-LTGSLAL 148
           +E+  +NA K+AEFL +HP+V  VNY GL  HP H L      KG G+VLSF + G    
Sbjct: 288 MERHVENALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGGREA 347

Query: 149 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN 208
            K  ++  K  S   + G  KSL+  P   +H  +  E +   G+T  L+R+SVGIE+++
Sbjct: 348 GKKFIDALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVGIENID 407

Query: 209 DLISDLDKAL 218
           D+I+DL++AL
Sbjct: 408 DIIADLEQAL 417

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418

>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional

 Score =  188 bits (480), Expect = 2e-58
 Identities = 88/224 (39%), Positives = 133/224 (59%), Gaps = 5/224 (2%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AHA GA +++DN   +P+L R L LGAD+V++S TK I G   V+ G +    E +   
Sbjct: 180 LAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGP 239

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +  L    G  L+ F+ W+ L+G++T+ALRV     +A +IAEFL  HP V+ V Y  LP
Sbjct: 240 VQKLMRHTGPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLP 299

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKH----VVETTKYFSITVSFGSVKSLISMP 175
            HP ++L   Q  G G+V++F L      +K     V++  +   I+ + G  KSLI+ P
Sbjct: 300 SHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAKSLITHP 359

Query: 176 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
              +H ++  E R A GL + +VR+SVG+ED +DLI+DLD+AL 
Sbjct: 360 ATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIADLDRALG 403

Length = 403

>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated

 Score =  186 bits (473), Expect = 6e-57
 Identities = 84/222 (37%), Positives = 137/222 (61%), Gaps = 6/222 (2%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKE 60
              H  ++  DN+++ PV  +PLE GAD+ ++S TK++ GHSD++AG  AV G + L ++
Sbjct: 206 RQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAG--AVLGRKALIRQ 263

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL- 119
           +  L++A G+ L P  CW+  R ++T+ LR+E+   NA+ +AEFL  HP+V+K++Y    
Sbjct: 264 VRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFL 323

Query: 120 -PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
            P+     ++  Q  GAGS  SF + G  A +   +   + F + VS G  +SL S P  
Sbjct: 324 DPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPAS 383

Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           M+H+ +P +VR+  G+ E  +R+S+GIE  +DLI+DL +AL 
Sbjct: 384 MTHSGVPADVRERIGVLESTIRLSIGIEHPDDLIADLAQALD 425

Length = 427

>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  183 bits (466), Expect = 6e-56
 Identities = 92/251 (36%), Positives = 134/251 (53%), Gaps = 34/251 (13%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL---- 57
           AH  G  L+VDN+I +P L RPLE GADIV+HSATK++ GH   +AGV+ V G       
Sbjct: 181 AHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVI-VDGGTFDWTQ 239

Query: 58  ---------------------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALR 90
                                       K    L    GS ++PF+ ++  +G++T++LR
Sbjct: 240 GRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLR 299

Query: 91  VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA-KGAGSVLSF-LTGSLAL 148
           +E+   NAQ++AEFL +   V  VNYAGLP  P +E     A KG G+VLSF L G +  
Sbjct: 300 IERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEA 359

Query: 149 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN 208
            K  V      S   + G V+SL+  P   +H+ +  E + A G+T  LVR++VGIE ++
Sbjct: 360 GKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGIEGID 419

Query: 209 DLISDLDKALR 219
           D+++DL+    
Sbjct: 420 DILADLEAGFA 430

Length = 436

>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  181 bits (462), Expect = 2e-55
 Identities = 95/252 (37%), Positives = 138/252 (54%), Gaps = 36/252 (14%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA---------- 51
           AH  G  L+VDN++ SP L RP+E GADIV+HS TKF+ GH + M G++           
Sbjct: 174 AHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKS 233

Query: 52  ------------VKGERLAK---ELYFLQNAE-------GSGLAPFDCWICLRGVKTMAL 89
                         G  L +      F   A        G  ++PF+ ++ L G++T+ L
Sbjct: 234 GKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPL 293

Query: 90  RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH--YSQAKGAGSVLSF-LTGSL 146
           R+++  DNA  +AE+L  HP+V  VNYAGLP+ P H L   YS  KGAG+V +F L G  
Sbjct: 294 RMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYS-PKGAGAVFTFGLKGGY 352

Query: 147 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED 206
                +V + K FS   + G  +SL+  P   +H  +  E + A G   D+VR+S+GIED
Sbjct: 353 EAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGIED 412

Query: 207 VNDLISDLDKAL 218
           V+D+I+DL++AL
Sbjct: 413 VDDIIADLEQAL 424

Length = 427

>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  179 bits (456), Expect = 2e-54
 Identities = 94/255 (36%), Positives = 131/255 (51%), Gaps = 36/255 (14%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL--- 57
           +AH  G  LLVD++  +P L RP E GAD+V HSATKF+ GH   + GVL V G R    
Sbjct: 174 IAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVL-VDGGRFDWE 232

Query: 58  -------AKELY----------------FLQNAE-------GSGLAPFDCWICLRGVKTM 87
                    E Y                FL  A        G+ L+P + W  L+G++T+
Sbjct: 233 ASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETL 292

Query: 88  ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS-QAKGAGSVLSF-LTGS 145
            LR+E+   N +K+  FLASHP V +V +  L  HP H L      +GAGSV SF L G 
Sbjct: 293 PLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGG 352

Query: 146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE 205
            A  +  +E+ K FS   + G  +SL+  P   +H  +      A G+ E  +R+S+G+E
Sbjct: 353 RAAGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGLE 412

Query: 206 DVNDLISDLDKALRT 220
           D +DLI DL +AL+ 
Sbjct: 413 DADDLIDDLKRALKA 427

Length = 433

>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed

 Score =  174 bits (443), Expect = 7e-53
 Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 5/223 (2%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A+  GA L+VDN   +P+  +PLELGA IV++SATK I G    + GV+      + + 
Sbjct: 175 IANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEH 234

Query: 61  L--YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
           L  YF     G  L+PF+ W  L+G++T+ +RV +Q ++A  IA+FLA HP+V +V Y G
Sbjct: 235 LQDYFRHT--GPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPG 292

Query: 119 LPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
             +HP  ++   Q  G  ++++F L G    +   +   K   I+ + G  KSLI+ P  
Sbjct: 293 RADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPAT 352

Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 220
            +H ++  E R   G++E  +R+S G+ED +DLI DL  AL+ 
Sbjct: 353 TTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAAALKK 395

Length = 398

>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated

 Score =  172 bits (439), Expect = 1e-52
 Identities = 83/220 (37%), Positives = 119/220 (54%), Gaps = 11/220 (5%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           AHA GALL+VDN+  +P+  RPLELGAD+V+ S TK + GHSD++ G +A +   L   +
Sbjct: 158 AHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAV 217

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
              +   G+   PF+ W+  R + T+ LR  +Q  NA  +AE LA HP V+ V Y GLP 
Sbjct: 218 ERWRLLAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPG 277

Query: 122 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 181
            P HE+   Q +  G ++SF     A ++  V  ++      SFG V           H 
Sbjct: 278 DPAHEVAARQMRRFGGLVSFELADAAAAERFVAASRLVVAATSFGGV-----------HT 326

Query: 182 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG 221
           S     R    + E  VR+S GIED +DL++DL++AL   
Sbjct: 327 SADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALDAL 366

Length = 366

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  171 bits (434), Expect = 3e-51
 Identities = 91/253 (35%), Positives = 140/253 (55%), Gaps = 34/253 (13%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------ 54
           +AH HG  L+VDN+  SP L RP+E GADIV+HSATKFI GH   + GV+   G      
Sbjct: 174 IAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKG 233

Query: 55  --------------------ERLAKELYFLQ------NAEGSGLAPFDCWICLRGVKTMA 88
                               + + +  Y  +         G+ L+PF+ ++ L+G++T+ 
Sbjct: 234 SGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLH 293

Query: 89  LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ-AKGAGSVLSF-LTGSL 146
           LR+E+  +NA  +A+FL  H  V+ V+Y GLP HP +EL      KG G++L+F + G +
Sbjct: 294 LRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGV 353

Query: 147 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED 206
              K ++++ K FS   + G  KSLI  P   +H  +  E + A G+T  LVR+SVG E 
Sbjct: 354 EAGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGTEA 413

Query: 207 VNDLISDLDKALR 219
           ++D++ DL +A+R
Sbjct: 414 IDDILDDLRQAIR 426

Length = 431

>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated

 Score =  168 bits (426), Expect = 2e-50
 Identities = 79/215 (36%), Positives = 122/215 (56%), Gaps = 6/215 (2%)

Query: 4   AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF 63
            H   ++VD +  SP    PL+LGAD+V+HSATK+I+GHSDV+ GV     + +   L  
Sbjct: 174 CHENDVIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVE 233

Query: 64  LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP 123
            +   GS   P   ++ LRG+KT+ LR+EK   N  ++A FL    ++  V Y      P
Sbjct: 234 RRKTLGSNPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYY------P 287

Query: 124 GHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI 183
             E+     +G G +LSF   S+      +   +   +  S G V+SLI++P   SH+S+
Sbjct: 288 DTEIGKKVLRGFGGMLSFELRSMEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSSL 347

Query: 184 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
             E R+  G++++LVR S+GIED++DLI D++ AL
Sbjct: 348 SPEERERLGISDNLVRFSIGIEDIDDLIKDIENAL 382

Length = 384

>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  160 bits (406), Expect = 3e-47
 Identities = 93/254 (36%), Positives = 138/254 (54%), Gaps = 39/254 (15%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------- 54
           AH HG  L+VDN++ +PVL RP E GADIV+HS TK+I GH   + G++   G       
Sbjct: 169 AHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEH 228

Query: 55  --------------------ERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTM 87
                               E      +        L+N  G+ L+PF+ ++ L+G++T+
Sbjct: 229 KERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNM-GAALSPFNAFLILQGLETL 287

Query: 88  ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL--HYSQAKGAGSVLSF-LTG 144
           ALR+E+  +NA K+A +L  HP+V  V YAGLP+HP HEL   Y   K A S+LSF + G
Sbjct: 288 ALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPA-SILSFGIKG 346

Query: 145 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI 204
             A     ++  K     V+ G  KSL   P   +H  +  E  +  G++ D+VR+S+GI
Sbjct: 347 GQAAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGI 406

Query: 205 EDVNDLISDLDKAL 218
           E ++D+I+DL +AL
Sbjct: 407 EHIDDIIADLAQAL 420

Length = 425

>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  152 bits (385), Expect = 4e-44
 Identities = 89/254 (35%), Positives = 135/254 (53%), Gaps = 37/254 (14%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------ 54
           +AH +   L+VDN+I +  L RPLELGAD+V+ S TKF  G+   + GVL   G      
Sbjct: 180 VAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTV 239

Query: 55  ERLAKEL--YF---------LQNAE------------------GSGLAPFDCWICLRGVK 85
           ER  K +  YF         L+ A+                  G+ L+PF+ W+  +G+ 
Sbjct: 240 ERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLD 299

Query: 86  TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA-KGAGSVLSF-LT 143
           T++LR+E+  +NA K+AEFL +H +V KVN+AGL + P +        K  GSVLSF + 
Sbjct: 300 TLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIK 359

Query: 144 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 203
           G    +   ++  K  S   + G V+SL+  P   +H+          G+T+  VR+SVG
Sbjct: 360 GGKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVG 419

Query: 204 IEDVNDLISDLDKA 217
           IED++D+I+DL+  
Sbjct: 420 IEDIDDIIADLEGG 433

Length = 437

>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional

 Score =  139 bits (352), Expect = 2e-39
 Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 27/229 (11%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A  HG + ++DNS  SPV  RP+ LG D+V+HSA+K++ GHSD +AGV+A   E +A+ 
Sbjct: 172 LAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIAR- 230

Query: 61  LYFLQNAE-----GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 115
                NAE     G+ L+PF+ W+ LRG++T+ LR++  + +A +IA  L +HP V++V 
Sbjct: 231 ----INAEAYPYLGAKLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVC 286

Query: 116 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP 175
           +  L  HP   L      G   + SF+       +   +  K F + VS+G  +SL+ +P
Sbjct: 287 HPALANHPPAGLS-----GTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLV-VP 340

Query: 176 CFMSHASIPVEVR------QARGLTEDLVRISVGIEDVNDLISDLDKAL 218
                A + ++ +         G++   VR+ VG+E    L +DL++AL
Sbjct: 341 -----AEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQAL 384

Length = 389

>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional

 Score =  138 bits (350), Expect = 4e-39
 Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 21/227 (9%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH H  ++++DN+  SP+ SRP E+G DI + +ATK+I GHSDVM G  A      A E
Sbjct: 171 IAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGT-AT-----ANE 224

Query: 61  LYFLQNAEGSGL-----APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 115
            ++ Q  E S L     +P D ++ +RG++T+ +R+ + + NA K+A +LA+ P V  V 
Sbjct: 225 KHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVR 284

Query: 116 YAGLPEHPGHELHYSQAKGAGSVLSFL--TGSLALSKHVVETTKYFSITVSFGSVKSLIS 173
           +      PGHE       G+  + SF+   G       +VE  ++F +  S+G  +SLI 
Sbjct: 285 HPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLI- 343

Query: 174 MPCFMSHASIPVEVRQARG--LTEDLVRISVGIEDVNDLISDLDKAL 218
               +    I  ++R A     ++ L+R+ +G+EDV+DLI+DL+   
Sbjct: 344 ----LGVFGIN-KLRTATNWDFSKPLIRLHIGLEDVDDLIADLEAGF 385

Length = 394

>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional

 Score =  135 bits (341), Expect = 7e-38
 Identities = 75/251 (29%), Positives = 115/251 (45%), Gaps = 47/251 (18%)

Query: 4   AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE----RLA- 58
             G L +VDN++ SP L RP ++GA +V++S +K+IAGH + + G +   G         
Sbjct: 159 ERGLLYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPN 218

Query: 59  -KELYFLQNAEGSGLAPF------DCWICLR---------GVKTMALRVEKQQDNAQKIA 102
               Y   + +  GL         D    L          G +T+ALRV++   NA  +A
Sbjct: 219 IFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAETLALRVDRSCSNALALA 278

Query: 103 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT 162
           +FL +HP+V +V Y GL  HP H       +  G +LSF    LA      +      + 
Sbjct: 279 QFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSF---ELADGIDCFDFLNRLKLV 335

Query: 163 VS---FGSVKSLISMPCFMSHASIPV----------EVRQARGLTEDLVRISVGIEDVND 209
           +     G  ++L+          IPV          E R + G+ + L+R+SVGIED  D
Sbjct: 336 IKATHLGDTRTLV----------IPVAPTIYYEMGAERRASMGIADSLIRVSVGIEDEAD 385

Query: 210 LISDLDKALRT 220
           LI+D ++AL  
Sbjct: 386 LIADFEQALDA 396

Length = 397

>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional

 Score =  134 bits (340), Expect = 1e-37
 Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 14/224 (6%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           AH HGA++++DN+  +P+  RPL+ G DI +H+ATK+ +GHSD++ G ++   E+   +L
Sbjct: 175 AHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQL 233

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
                  G    P D +  LRG++TM +R+E  + +A +IA +L   P V +V +  LP 
Sbjct: 234 LEAHGTLGLCAGPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPS 293

Query: 122 HPGHELHYSQAKGAGSVLSF-LTGSLALSKH----VVETTKYFSITVSFGSVKSLISMPC 176
            PGHE+      GA  + SF L       K      ++  + F +  S+G  +SL     
Sbjct: 294 FPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESL----- 348

Query: 177 FMSHASIPVEVRQARGLTED-LVRISVGIEDVNDLISDLDKALR 219
              H  +  +   A+      ++R+ +G+EDV DL +DL++   
Sbjct: 349 -ALHVKL-GDRTVAKAPYAGPVIRLQIGLEDVPDLKADLERGFA 390

Length = 395

>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional

 Score =  130 bits (330), Expect = 3e-36
 Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 17/224 (7%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           A A G +  +DN+  + +  +P E G DI + + TK+ +G SDV+ G        L  +L
Sbjct: 176 ARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKL 235

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
              +   G G++  DC + LRG+ ++ +R+     +A ++AE+L + P +  V +  LP+
Sbjct: 236 KLARMRLGIGVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPD 295

Query: 122 HPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFM 178
            PGH        GAG + S +         V   VE  + F+I  S+G   SL       
Sbjct: 296 CPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSL------- 348

Query: 179 SHASIPVEVRQARGLTED----LVRISVGIEDVNDLISDLDKAL 218
              ++P +V   R         LVR+ +G+ED  DLI+DL++AL
Sbjct: 349 ---AMPYDVASMRTAKWPHRGTLVRLYIGLEDEADLIADLEQAL 389

Length = 394

>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial

 Score =  128 bits (323), Expect = 2e-35
 Identities = 65/216 (30%), Positives = 113/216 (52%), Gaps = 9/216 (4%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           A   G ++++DN+  + +L +PLE G DI + + TK++ GHSD+M G   V   R   +L
Sbjct: 161 ARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGT-VVANARTWDQL 219

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
                  G  +   D +  LRG++T+ +R+++ Q+++  IA++L+  P V +V +  LP 
Sbjct: 220 REHSYLMGQMVDADDAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPS 279

Query: 122 HPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFM 178
            PGHE       G+  + SF+   L   K V   ++  + F +  S+G  +SL  +    
Sbjct: 280 CPGHEFWKRDFSGSSGLFSFVLQRLT-QKQVHAFLDHLQLFGLGYSWGGYESLA-LCNQP 337

Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 214
                P      R L   L+R+ +G+E+V+DL +DL
Sbjct: 338 ELGHRPN---IKRNLEGPLIRVHIGLENVDDLKADL 370

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377

>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  124 bits (311), Expect = 2e-33
 Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 33/246 (13%)

Query: 9   LLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE------------- 55
            +VDN++ +P L +  E GA+I++HS TK+I GH+  + G++   G              
Sbjct: 180 FIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVE 239

Query: 56  ------------------RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDN 97
                              + K    L    G+ ++PF+ +I   G++T+ LR+E+  +N
Sbjct: 240 PDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSEN 299

Query: 98  AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ-AKGAGSVLSF-LTGSLALSKHVVET 155
           A  +A++LA H R++ VNY GL  +  + L      KGA  VL+F + G L  +K  +  
Sbjct: 300 ALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIAN 359

Query: 156 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 215
            K  ++       ++ +  P   +H  +  E ++  G+T DL+R+SVGIEDV+D+I+DL+
Sbjct: 360 VKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGIEDVSDIIADLE 419

Query: 216 KALRTG 221
            AL  G
Sbjct: 420 AALVGG 425

Length = 432

>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional

 Score =  118 bits (297), Expect = 2e-31
 Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 20/223 (8%)

Query: 7   ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 66
           A++++DN+  + VL + L+ G DI + + TK++ GHSD M G  AV   R  ++L   +N
Sbjct: 180 AVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGT-AVANARCWEQLR--EN 236

Query: 67  AEGSG-LAPFD-CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG 124
           +   G +   D  ++  RG++T+ +R+ + ++++ K+AE+LA HP V +VN+  LP   G
Sbjct: 237 SYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKG 296

Query: 125 HELHYSQAKGAGSVLSF-LTGSLALSK--HVVETTKYFSITVSFGSVKSLISMPCFMSHA 181
           HE       G+  + SF L   L   +  + ++    FS+  S+G  +SLI        A
Sbjct: 297 HEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLIL-------A 349

Query: 182 SIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDKALR 219
           + P E+   R       T  L+R+ +G+EDV+DLI+DL     
Sbjct: 350 NQPEEIAAIRPAGEVDFTGTLIRLHIGLEDVDDLIADLAAGFA 392

Length = 395

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score = 86.4 bits (214), Expect = 8e-20
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 31/223 (13%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAK 59
           +AH  G  ++VDN+  +P++  P  LGAD+V+HS +KFI+G +D++AG  AV G   L  
Sbjct: 188 IAHEKGVTVVVDNT-FAPMVLSPARLGADVVVHSISKFISGGADIIAG--AVCGPAELVN 244

Query: 60  ELYFLQNAEGSGLAP-------FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK 112
            +  L +     L P       F+  +  R +  ++LR+++    A + A+      R+K
Sbjct: 245 SMMDLHHGALMLLGPTMNPKVAFE--LSER-LPHLSLRMKEHCRRAMEYAK------RMK 295

Query: 113 ----KVNYAGLPEHPGHELHYSQAK---GAGSVLSFLTGSLA----LSKHVVETTKYFSI 161
               KV Y GL +HP H L  S A    G G +L     +      L +++  +T++  +
Sbjct: 296 ELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFM 355

Query: 162 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI 204
            VS G  ++L+S     + + +  E + A G++  LVR+SVG 
Sbjct: 356 AVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGY 398

Length = 418

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	100.0
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	100.0
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	100.0
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	100.0
PRK08861	388	cystathionine gamma-synthase; Provisional	100.0
PRK09028	394	cystathionine beta-lyase; Provisional	100.0
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08114	395	cystathionine beta-lyase; Provisional	100.0
PRK05967	395	cystathionine beta-lyase; Provisional	100.0
PRK08045	386	cystathionine gamma-synthase; Provisional	100.0
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PLN02509	464	cystathionine beta-lyase	100.0
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	100.0
PRK08574	385	cystathionine gamma-synthase; Provisional	100.0
PRK05939	397	hypothetical protein; Provisional	100.0
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	100.0
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08776	405	cystathionine gamma-synthase; Provisional	100.0
PRK06434	384	cystathionine gamma-lyase; Validated	100.0
PRK07671	377	cystathionine beta-lyase; Provisional	100.0
PRK08249	398	cystathionine gamma-synthase; Provisional	100.0
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	100.0
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	100.0
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	100.0
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	100.0
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	100.0
PRK07049	427	methionine gamma-lyase; Validated	100.0
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	100.0
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	100.0
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	100.0
PRK07811	388	cystathionine gamma-synthase; Provisional	100.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	100.0
PRK06460	376	hypothetical protein; Provisional	100.0
PRK06234	400	methionine gamma-lyase; Provisional	100.0
PRK08064	390	cystathionine beta-lyase; Provisional	100.0
PRK07503	403	methionine gamma-lyase; Provisional	100.0
PRK07269	364	cystathionine gamma-synthase; Reviewed	100.0
PRK07050	394	cystathionine beta-lyase; Provisional	100.0
PRK06767	386	methionine gamma-lyase; Provisional	100.0
PRK07582	366	cystathionine gamma-lyase; Validated	100.0
PLN02242	418	methionine gamma-lyase	100.0
PRK05968	389	hypothetical protein; Provisional	100.0
PRK08247	366	cystathionine gamma-synthase; Reviewed	100.0
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.69
PRK04311	464	selenocysteine synthase; Provisional	99.57
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.33
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.23
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.2
PRK15029	755	arginine decarboxylase; Provisional	99.19
PLN02721	353	threonine aldolase	99.1
PRK13578	720	ornithine decarboxylase; Provisional	99.09
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.09
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.09
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.04
PLN02271	586	serine hydroxymethyltransferase	99.01
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.01
PLN03226	475	serine hydroxymethyltransferase; Provisional	98.99
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.98
PTZ00094	452	serine hydroxymethyltransferase; Provisional	98.97
PRK07179	407	hypothetical protein; Provisional	98.96
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	98.91
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	98.91
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	98.89
PRK13580	493	serine hydroxymethyltransferase; Provisional	98.89
PRK05957	389	aspartate aminotransferase; Provisional	98.87
PRK05764	393	aspartate aminotransferase; Provisional	98.86
PRK10874	401	cysteine sulfinate desulfinase; Provisional	98.86
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	98.86
PRK07324	373	transaminase; Validated	98.83
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	98.82
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	98.81
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	98.81
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	98.81
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	98.81
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	98.81
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	98.8
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	98.8
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	98.77
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	98.75
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	98.73
PLN02483	489	serine palmitoyltransferase	98.73
PRK06108	382	aspartate aminotransferase; Provisional	98.72
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	98.72
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	98.71
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	98.71
PRK15399	713	lysine decarboxylase LdcC; Provisional	98.71
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	98.69
PRK13392	410	5-aminolevulinate synthase; Provisional	98.67
PLN02651	364	cysteine desulfurase	98.67
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	98.66
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	98.66
PRK08056	356	threonine-phosphate decarboxylase; Provisional	98.66
PRK06358	354	threonine-phosphate decarboxylase; Provisional	98.64
PRK13393	406	5-aminolevulinate synthase; Provisional	98.64
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	98.63
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	98.63
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	98.63
PRK15400	714	lysine decarboxylase CadA; Provisional	98.62
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	98.62
PRK07568	397	aspartate aminotransferase; Provisional	98.61
PRK06207	405	aspartate aminotransferase; Provisional	98.6
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	98.59
PRK09064	407	5-aminolevulinate synthase; Validated	98.59
PRK06348	384	aspartate aminotransferase; Provisional	98.58
PRK06290	410	aspartate aminotransferase; Provisional	98.56
PRK07337	388	aminotransferase; Validated	98.55
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	98.55
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	98.53
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	98.52
TIGR01814	406	kynureninase kynureninase. This model describes ky	98.52
PRK06225	380	aspartate aminotransferase; Provisional	98.51
PRK06107	402	aspartate aminotransferase; Provisional	98.5
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	98.5
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	98.5
PRK08960	387	hypothetical protein; Provisional	98.49
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	98.48
PRK07681	399	aspartate aminotransferase; Provisional	98.48
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.47
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	98.47
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	98.46
PRK14012	404	cysteine desulfurase; Provisional	98.46
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	98.45
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	98.45
PRK02948	381	cysteine desulfurase; Provisional	98.44
PRK07682	378	hypothetical protein; Validated	98.43
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	98.4
PRK07550	386	hypothetical protein; Provisional	98.4
PRK09148	405	aminotransferase; Validated	98.4
PRK07777	387	aminotransferase; Validated	98.4
PRK08361	391	aspartate aminotransferase; Provisional	98.39
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	98.39
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	98.39
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	98.39
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	98.38
PRK12414	384	putative aminotransferase; Provisional	98.38
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	98.38
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	98.38
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	98.37
PRK08363	398	alanine aminotransferase; Validated	98.37
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	98.36
PRK07309	391	aromatic amino acid aminotransferase; Validated	98.36
PRK08068	389	transaminase; Reviewed	98.35
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	98.35
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	98.35
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	98.35
PLN02187	462	rooty/superroot1	98.34
PRK08175	395	aminotransferase; Validated	98.32
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	98.31
PLN02656	409	tyrosine transaminase	98.31
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	98.31
PRK09265	404	aminotransferase AlaT; Validated	98.3
PRK13520	371	L-tyrosine decarboxylase; Provisional	98.28
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	98.27
PRK05942	394	aspartate aminotransferase; Provisional	98.27
PRK00950	361	histidinol-phosphate aminotransferase; Validated	98.26
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	98.25
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	98.24
PRK02731	367	histidinol-phosphate aminotransferase; Validated	98.24
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	98.23
PTZ00433	412	tyrosine aminotransferase; Provisional	98.23
PRK06425	332	histidinol-phosphate aminotransferase; Validated	98.22
PRK03244	398	argD acetylornithine aminotransferase; Provisional	98.21
PRK07908	349	hypothetical protein; Provisional	98.21
PLN00175	413	aminotransferase family protein; Provisional	98.2
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	98.19
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	98.18
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	98.18
PRK07683	387	aminotransferase A; Validated	98.18
PTZ00377	481	alanine aminotransferase; Provisional	98.17
PRK08912	387	hypothetical protein; Provisional	98.17
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	98.16
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	98.15
PRK05839	374	hypothetical protein; Provisional	98.14
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	98.14
PRK07366	388	succinyldiaminopimelate transaminase; Validated	98.14
PLN02880	490	tyrosine decarboxylase	98.14
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	98.14
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	98.13
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	98.12
PRK13237	460	tyrosine phenol-lyase; Provisional	98.12
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.12
PRK09082	386	methionine aminotransferase; Validated	98.11
PTZ00376	404	aspartate aminotransferase; Provisional	98.11
PLN02409	401	serine--glyoxylate aminotransaminase	98.11
PLN02822	481	serine palmitoyltransferase	98.11
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	98.1
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	98.1
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	98.09
PRK08636	403	aspartate aminotransferase; Provisional	98.09
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	98.06
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.06
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	98.06
PRK04366	481	glycine dehydrogenase subunit 2; Validated	98.05
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	98.02
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	98.02
PRK04612	408	argD acetylornithine transaminase protein; Provisi	98.02
PLN02955	476	8-amino-7-oxononanoate synthase	98.02
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	98.01
PRK03080	378	phosphoserine aminotransferase; Provisional	98.01
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	98.0
PRK09105	370	putative aminotransferase; Provisional	98.0
PRK06836	394	aspartate aminotransferase; Provisional	98.0
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	97.99
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	97.98
PRK10534	333	L-threonine aldolase; Provisional	97.97
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	97.96
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	97.96
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	97.94
PRK02936	377	argD acetylornithine aminotransferase; Provisional	97.93
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	97.92
PRK07505	402	hypothetical protein; Provisional	97.91
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	97.9
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	97.9
PLN02397	423	aspartate transaminase	97.9
PTZ00125	400	ornithine aminotransferase-like protein; Provision	97.86
PRK08354	311	putative aminotransferase; Provisional	97.83
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	97.8
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	97.8
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	97.79
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	97.79
PLN02231	534	alanine transaminase	97.79
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	97.79
PLN00144	382	acetylornithine transaminase	97.79
PRK07392	360	threonine-phosphate decarboxylase; Validated	97.79
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	97.79
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	97.78
PRK01278	389	argD acetylornithine transaminase protein; Provisi	97.78
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	97.76
PRK02627	396	acetylornithine aminotransferase; Provisional	97.76
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	97.75
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	97.75
PRK08088	425	4-aminobutyrate aminotransferase; Validated	97.74
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	97.74
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	97.73
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	97.72
PRK06855	433	aminotransferase; Validated	97.72
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	97.72
PRK01533	366	histidinol-phosphate aminotransferase; Validated	97.72
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	97.71
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	97.71
PLN02590	539	probable tyrosine decarboxylase	97.71
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	97.7
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	97.7
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	97.69
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	97.67
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	97.67
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	97.66
PRK09257	396	aromatic amino acid aminotransferase; Provisional	97.66
PRK03321	352	putative aminotransferase; Provisional	97.66
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	97.64
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	97.64
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	97.64
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	97.64
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	97.63
PLN02624	474	ornithine-delta-aminotransferase	97.61
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	97.61
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	97.6
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	97.6
PRK05367	954	glycine dehydrogenase; Provisional	97.57
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	97.56
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	97.55
PLN02724	805	Molybdenum cofactor sulfurase	97.54
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	97.53
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	97.53
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	97.52
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	97.52
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	97.51
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	97.5
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	97.45
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	97.43
PLN02672	1082	methionine S-methyltransferase	97.42
PRK07678	451	aminotransferase; Validated	97.38
PRK00451	447	glycine dehydrogenase subunit 1; Validated	97.38
PRK09792	421	4-aminobutyrate transaminase; Provisional	97.37
PRK02769	380	histidine decarboxylase; Provisional	97.37
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	97.33
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	97.32
PLN02414	993	glycine dehydrogenase (decarboxylating)	97.31
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	97.28
PRK05965	459	hypothetical protein; Provisional	97.27
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	97.27
PRK05367	954	glycine dehydrogenase; Provisional	97.27
PLN02760	504	4-aminobutyrate:pyruvate transaminase	97.27
PRK04260	375	acetylornithine aminotransferase; Provisional	97.26
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	97.25
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	97.25
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	97.25
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	97.24
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	97.21
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	97.19
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	97.19
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	97.18
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	97.15
PRK06105	460	aminotransferase; Provisional	97.12
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	97.12
PRK06541	460	hypothetical protein; Provisional	97.1
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	97.09
PRK12566	954	glycine dehydrogenase; Provisional	97.07
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	97.07
PRK03715	395	argD acetylornithine transaminase protein; Provisi	97.05
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	97.05
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	97.04
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	97.01
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	97.01
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	97.01
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	97.01
PRK06062	451	hypothetical protein; Provisional	96.99
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	96.99
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	96.98
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	96.93
PRK07482	461	hypothetical protein; Provisional	96.9
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	96.89
PRK07036	466	hypothetical protein; Provisional	96.88
PLN02414	993	glycine dehydrogenase (decarboxylating)	96.84
PRK06149	972	hypothetical protein; Provisional	96.81
PLN02368	407	alanine transaminase	96.81
PRK06917	447	hypothetical protein; Provisional	96.8
PRK08637	388	hypothetical protein; Provisional	96.79
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	96.78
PRK07481	449	hypothetical protein; Provisional	96.76
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	96.76
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	96.76
PRK12403	460	putative aminotransferase; Provisional	96.69
PLN03032	374	serine decarboxylase; Provisional	96.62
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	96.58
PRK08297	443	L-lysine aminotransferase; Provisional	96.54
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	96.49
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	96.48
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	96.46
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	96.39
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	96.39
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	96.27
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	96.19
COG3844	407	Kynureninase [Amino acid transport and metabolism]	96.16
PLN02452	365	phosphoserine transaminase	96.1
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	96.0
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	95.96
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	95.86
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	95.82
KOG1368	384	consensus Threonine aldolase [Amino acid transport	95.7
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	95.7
PRK06148	1013	hypothetical protein; Provisional	95.7
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	95.63
PRK07480	456	putative aminotransferase; Validated	95.34
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	95.31
PRK07483	443	hypothetical protein; Provisional	95.19
PRK12462	364	phosphoserine aminotransferase; Provisional	94.95
COG4100	416	Cystathionine beta-lyase family protein involved i	94.84
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	94.83
PRK07046	453	aminotransferase; Validated	94.82
PLN02263	470	serine decarboxylase	94.57
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	94.16
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	93.33
PRK09275	527	aspartate aminotransferase; Provisional	93.23
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	93.22
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	93.07
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	92.91
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	92.81
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	90.64
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	90.61
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	90.59
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	89.5
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	89.22
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	88.9
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	88.08
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	88.02
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	87.92
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	87.16
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	85.75
KOG0629	510	consensus Glutamate decarboxylase and related prot	84.94
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	82.16
KOG0634	472	consensus Aromatic amino acid aminotransferase and	81.98

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=6e-76  Score=530.56  Aligned_cols=221  Identities=54%  Similarity=0.891  Sum_probs=211.0

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-hcCCCCChHhHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGSGLAPFDCWI   79 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-~~g~~~sp~da~l   79 (223)
                      +||++|+.+||||||+||++|+||++||||||||+|||++||||+++|+++.+++++++.+....+ .+|..++|+|||+
T Consensus       174 ~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l  253 (396)
T COG0626         174 LAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWL  253 (396)
T ss_pred             HHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence            478999999999999999999999999999999999999999999999887777778777766555 6999999999999


Q ss_pred             HHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcc
Q 027424           80 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF  159 (223)
Q Consensus        80 l~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~  159 (223)
                      ++||||||.+||++|++||++||+||++||.|++|+|||+++||+|++++||++|+||||||++.+.+++++|+++|++|
T Consensus       254 ~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l~  333 (396)
T COG0626         254 LLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLF  333 (396)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999995438899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      .+++||||+|||+++|+.|+|..+++|+|++.||++++|||||||||++|||+||+|||+++
T Consensus       334 ~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGlEd~eDLi~Dl~~Al~~~  395 (396)
T COG0626         334 KLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLEDVEDLIADLEQALAKA  395 (396)
T ss_pred             EEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999875

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=1.9e-71  Score=503.56  Aligned_cols=219  Identities=48%  Similarity=0.819  Sum_probs=198.3

Q ss_pred             CccccC-CEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecC-hhHHHHHHHHHHhcCCCCChHhHH
Q 027424            1 MAHAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAPFDCW   78 (223)
Q Consensus         1 ia~~~g-~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~-~~~~~~l~~~~~~~g~~~sp~da~   78 (223)
                      +||++| +++||||||++|++++||++||||||||+|||++||+|+++|+|++++ +++.++++..+..+|.+++|+|||
T Consensus       165 ~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~  244 (386)
T PF01053_consen  165 LAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAW  244 (386)
T ss_dssp             HHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHH
T ss_pred             HHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHH
Confidence            478999 999999999999999999999999999999999999999999999888 677788888889999999999999


Q ss_pred             HHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH-HHHHHHHhhcC
Q 027424           79 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTK  157 (223)
Q Consensus        79 ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~-~~~~~f~~~l~  157 (223)
                      +++|||+||.+||+++++||++||+||++||.|++|+||||++||+|+++++|++|+||||||++++. +++++|+++|+
T Consensus       245 ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~  324 (386)
T PF01053_consen  245 LLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALK  324 (386)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-S
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999766 58999999999


Q ss_pred             cceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          158 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       158 l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      +|.+++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||+
T Consensus       325 l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlEd~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  325 LFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGLEDPDDLIADLEQALE  386 (386)
T ss_dssp             SSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH
T ss_pred             hHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEeccCCHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999996

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-69  Score=485.01  Aligned_cols=221  Identities=47%  Similarity=0.714  Sum_probs=211.8

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++|||||||++|++++||++|||||+||+||||+||||++||+++.|.++++++++..+..+|.+++|++||++
T Consensus       187 la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll  266 (409)
T KOG0053|consen  187 LAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLL  266 (409)
T ss_pred             HHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE-EeCCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf-~~~~~~~~~~f~~~l~l~  159 (223)
                      .|+++|+.+||+++.+||+++|+||++||.|++|+||||++||+|+++++|.+|.+|+++| .+++.+.+++|+++||+|
T Consensus       267 ~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~~~a~kf~~~LK~~  346 (409)
T KOG0053|consen  267 SRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNEEHAKKFYDALKLF  346 (409)
T ss_pred             hcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999999999999999999999999876554555 558899999999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  222 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~  222 (223)
                      ++|+|||++|||+++|+.|||++ ++|+|.+.||+++|||+||||||.+|||+||+|||+++.
T Consensus       347 ~~a~SlG~~eSL~~~p~~mth~~-~~e~~~~~Gi~~~LVRvSVGiEd~~dL~~d~~~Al~~~~  408 (409)
T KOG0053|consen  347 TKAPSLGGNESLAEPPAIMTHAS-ELEEREKFGIDPNLVRVSVGIEDIEDLIKDFQQALEKAK  408 (409)
T ss_pred             hcccCcCccchhhcchhhhccCC-CHHHHHhcCCCCCcEEEEeccCCHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999 999999999999999999999999999999999999764

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-69  Score=476.40  Aligned_cols=221  Identities=43%  Similarity=0.737  Sum_probs=205.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChh----------------------HH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER----------------------LA   58 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~----------------------~~   58 (223)
                      +||++|+|+|||||+++|++++|+++||||||||+|||++||+..+||+++..+.-                      +.
T Consensus       172 iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~  251 (426)
T COG2873         172 IAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYT  251 (426)
T ss_pred             HHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehh
Confidence            58999999999999999999999999999999999999999999999999875421                      01


Q ss_pred             H---------HH-HHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHH
Q 027424           59 K---------EL-YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  128 (223)
Q Consensus        59 ~---------~l-~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  128 (223)
                      +         +. ....+.+|+++||+++|++++|||||.+||+|+++||+++|+||++||+|.+|+||||++||+|+++
T Consensus       252 ~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la  331 (426)
T COG2873         252 ETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALA  331 (426)
T ss_pred             hhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHH
Confidence            1         11 1234678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh-CCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC
Q 027424          129 YSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED  206 (223)
Q Consensus       129 ~~~~-~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd  206 (223)
                      +|+. +|+|+++||++ ++.++.++|+++|++|...+++|+.+||+.||+++||.++++|++.++||++++||+|||+||
T Consensus       332 ~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGIEd  411 (426)
T COG2873         332 KKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGIED  411 (426)
T ss_pred             HhhccCCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEeccCC
Confidence            9986 69999999999 677999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 027424          207 VNDLISDLDKALRTG  221 (223)
Q Consensus       207 ~~dL~~dl~~Al~~~  221 (223)
                      ++|||+||+|||+++
T Consensus       412 ~~DiiaDl~qAl~~~  426 (426)
T COG2873         412 IDDIIADLEQALEAA  426 (426)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999874

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=8.3e-68  Score=480.74  Aligned_cols=221  Identities=44%  Similarity=0.715  Sum_probs=213.6

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++|++++|+++|||++++|+|||++||+|++||+++++++++.++++.++..+|.+++|+|||++
T Consensus       163 la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~  242 (388)
T PRK08861        163 KAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMT  242 (388)
T ss_pred             HHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHH
Confidence            47889999999999999999999999999999999999999999999999888778888888888999999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +|||+||.+||+||++||++||+||++||.|++|+||||++||+|+++++|++|+||||||++ ++.+.+.+|+++|++|
T Consensus       243 ~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~  322 (388)
T PRK08861        243 LRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALF  322 (388)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999 5688899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      .+++||||++||+++|++++|+.+++++|++.||++++|||||||||+||||+||+|||+++
T Consensus       323 ~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE~~~dli~Dl~~al~~~  384 (388)
T PRK08861        323 SLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGLEDAQDLIADLDQAFAKA  384 (388)
T ss_pred             eEccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999965

>PRK09028 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.1e-65  Score=467.38  Aligned_cols=216  Identities=32%  Similarity=0.554  Sum_probs=201.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++++||||+++|++++|+++|||+|++|+|||++||||+++|+++ .+++++++++..+..+|.+++|+|||++
T Consensus       171 la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~-~~~~~~~~l~~~~~~~G~~~~p~~a~l~  249 (394)
T PRK09028        171 IAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTAT-ANEKHWDQLREHSYLMGQCTSPDDVYLA  249 (394)
T ss_pred             HHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEE-CCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            478999999999999999999999999999999999999999999999775 4456677788777889999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC--CHHHHHHHHhhcCc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHVVETTKY  158 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~--~~~~~~~f~~~l~l  158 (223)
                      +|||+||.+||++|++||++||+||++||+|++|+||||++||+|+++++|++|+|||+||+++  +.+.+++|+++|++
T Consensus       250 ~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l  329 (394)
T PRK09028        250 MRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQH  329 (394)
T ss_pred             HcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999994  57889999999999


Q ss_pred             ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          159 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       159 ~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      |.+++||||++||+++|++++|...    +++.|+.+++|||||||||+||||+||+|||++.
T Consensus       330 ~~~~~slG~~~sLv~~p~~~~~~~~----~~~~~~~~~liR~svGlEd~~dLi~Dl~~Al~~~  388 (394)
T PRK09028        330 FKMGFSWGGFESLILGVFGINKLRT----ATNWDFSKPLIRLHIGLEDVDDLIADLEAGFERY  388 (394)
T ss_pred             ceEecccCCCcceeECCCCcCccCc----hhhhcCCCCeEEEEeCcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998887643    2347888899999999999999999999999853

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.9e-65  Score=468.90  Aligned_cols=221  Identities=34%  Similarity=0.591  Sum_probs=204.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecCh---------hH--------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---------RL--------------   57 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~---------~~--------------   57 (223)
                      +||++|++|||||||++|++++|+++|||||+||+|||++||+|+++|+++.++.         ++              
T Consensus       172 iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~  251 (432)
T PRK06702        172 AAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQ  251 (432)
T ss_pred             HHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhh
Confidence            5899999999999999999999999999999999999999999999998874331         11              


Q ss_pred             --------HHHHHHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHH
Q 027424           58 --------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  129 (223)
Q Consensus        58 --------~~~l~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~  129 (223)
                              .+......+.+|.++||++||+++|+|+|+..||+++++||.+|++||++||.|++|+|||+++||+|++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~  331 (432)
T PRK06702        252 NFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQ  331 (432)
T ss_pred             ccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHH
Confidence                    111223455679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh-CCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCH
Q 027424          130 SQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV  207 (223)
Q Consensus       130 ~~~-~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~  207 (223)
                      +|| .|+||||||++ ++.+.+.+|+++|++|.+++||||++||+++|++++|+.+++|+|++.||++++|||||||||+
T Consensus       332 ~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~  411 (432)
T PRK06702        332 KYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGIEDV  411 (432)
T ss_pred             HhCcCCCceEEEEEecCCHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCH
Confidence            999 78999999999 6778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC
Q 027424          208 NDLISDLDKALRTG  221 (223)
Q Consensus       208 ~dL~~dl~~Al~~~  221 (223)
                      ||||+||+|||+-.
T Consensus       412 eDLi~Dl~~Al~~~  425 (432)
T PRK06702        412 SDIIADLEAALVGG  425 (432)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999854

>PRK08114 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.1e-65  Score=463.23  Aligned_cols=216  Identities=29%  Similarity=0.503  Sum_probs=197.5

Q ss_pred             Ccccc--CCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHH
Q 027424            1 MAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW   78 (223)
Q Consensus         1 ia~~~--g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~   78 (223)
                      +||++  |++++|||||++|++++|+++|||+|+||+|||++||||+++|+++.+ ++.+++++..+..+|.+++|+|||
T Consensus       172 ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~~a~  250 (395)
T PRK08114        172 AVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQLRENSYLMGQMVDADTAY  250 (395)
T ss_pred             HHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcC-HHHHHHHHHHHHhccCCCCHHHHH
Confidence            47887  499999999999999999999999999999999999999999987655 456677777778899999999999


Q ss_pred             HHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC---CHHHHHHHHhh
Q 027424           79 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---SLALSKHVVET  155 (223)
Q Consensus        79 ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~---~~~~~~~f~~~  155 (223)
                      |++|||+||.+||+||++||.+||+||++||.|++|+||||++||+|+++++|++|+||||||+++   +.+++.+|+++
T Consensus       251 l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~  330 (395)
T PRK08114        251 MTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDN  330 (395)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999994   47889999999


Q ss_pred             cCcceeccccCCCCCCCC--CCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          156 TKYFSITVSFGSVKSLIS--MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       156 l~l~~~~~s~G~~~sli~--~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      +++|.+++||||++||++  +|..++|.. +++   +.|+.+++|||||||||+||||+||+|||++.
T Consensus       331 l~l~~~a~SlGg~~SLi~~~~~~~~~~~~-~~~---~~~~~~~liRlSvGlEd~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        331 FSLFSMAYSWGGFESLILANQPEEIAAIR-PAG---EVDFTGTLIRLHIGLEDVDDLIADLAAGFARI  394 (395)
T ss_pred             CCcceeecccCCccceeccCCchhhhccC-Chh---HhcCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            999999999999999999  566666655 443   45677799999999999999999999999864

>PRK05967 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=5.6e-65  Score=462.52  Aligned_cols=215  Identities=31%  Similarity=0.560  Sum_probs=198.5

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++|++++|+++|||||+||+|||++||+|+++|+++.+ ++.+++++.....+|.+++|+|||++
T Consensus       174 la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~da~l~  252 (395)
T PRK05967        174 AAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTLGLCAGPDDTYQI  252 (395)
T ss_pred             HHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            47999999999999999999999999999999999999999999999987655 46677787777789999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-----CHHHHHHHHhh
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-----SLALSKHVVET  155 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-----~~~~~~~f~~~  155 (223)
                      +|||+||.+||+||++||.+||+||++||+|++|+||||++||+|++++||++|+|||+||+++     +.+.+++|+++
T Consensus       253 ~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~  332 (395)
T PRK05967        253 LRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDA  332 (395)
T ss_pred             HcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999994     36889999999


Q ss_pred             cCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCC
Q 027424          156 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  222 (223)
Q Consensus       156 l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~  222 (223)
                      |++|.+++||||++||++|+      .++.+.+.+.|+.+++|||||||||++|||+||+|||+++.
T Consensus       333 l~l~~~~~slG~~~sLi~~~------~~~~~~~~~~~~~~~liRlSvGlEd~~dLi~Dl~~Al~~~~  393 (395)
T PRK05967        333 LEIFGLGYSWGGYESLALHV------KLGDRTVAKAPYAGPVIRLQIGLEDVPDLKADLERGFAAAS  393 (395)
T ss_pred             CCcceEccCCCCcceeeeeC------CCChhHhhhccCCCCeEEEEeccCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999863      33445555579999999999999999999999999999753

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2.2e-64  Score=458.21  Aligned_cols=222  Identities=43%  Similarity=0.683  Sum_probs=213.5

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++|..++|+++|||+|++|+|||++||+|+++|+++++++++.+++...+...|.+++|+++|++
T Consensus       162 ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~  241 (386)
T PRK08045        162 LAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLL  241 (386)
T ss_pred             HHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999887777888888888889999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +|+|+|+..||+++++||++||+||++||.|++|+||||++||+|+++++|++|+||||||++ ++.+++++|+++|++|
T Consensus       242 ~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~  321 (386)
T PRK08045        242 LRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLF  321 (386)
T ss_pred             HhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccce
Confidence            999999999999999999999999999999999999999999999999999999999999999 5678889999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  222 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~  222 (223)
                      .+++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||++++
T Consensus       322 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~  384 (386)
T PRK08045        322 TLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN  384 (386)
T ss_pred             eEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999875

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.9e-63  Score=457.94  Aligned_cols=222  Identities=41%  Similarity=0.664  Sum_probs=205.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecCh-------------------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-------------------------   55 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~-------------------------   55 (223)
                      +||++|+++|||||+++|++++|+++|||+|++|+|||++||+|++||+++.+..                         
T Consensus       180 la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (436)
T PRK07812        180 VAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAE  259 (436)
T ss_pred             HHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhh
Confidence            4799999999999999999999999999999999999999999999998875431                         


Q ss_pred             ----hH-HHHHHHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHh
Q 027424           56 ----RL-AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  130 (223)
Q Consensus        56 ----~~-~~~l~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~  130 (223)
                          .+ .+......+..|..++|+|||+++|+|+||.+||+++++||.+||+||++||.|++|+|||+++||+|+++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~  339 (436)
T PRK07812        260 LGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKR  339 (436)
T ss_pred             cchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHH
Confidence                00 0112234567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh-CCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHH
Q 027424          131 QA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN  208 (223)
Q Consensus       131 ~~-~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~  208 (223)
                      |+ +|+||||||++ ++.+.+++|+++|++|..++||||++||+++|++++|+.+++|+|++.||++++|||||||||+|
T Consensus       340 ~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGlEd~~  419 (436)
T PRK07812        340 LAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGIEGID  419 (436)
T ss_pred             hCcCCCceEEEEEecCCHHHHHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCHH
Confidence            99 78999999999 66788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC
Q 027424          209 DLISDLDKALRTGP  222 (223)
Q Consensus       209 dL~~dl~~Al~~~~  222 (223)
                      |||+||+|||+++.
T Consensus       420 dli~dl~~Al~~~~  433 (436)
T PRK07812        420 DILADLEAGFAAAK  433 (436)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999999753

>PLN02509 cystathionine beta-lyase

Probab=100.00  E-value=4.3e-63  Score=458.06  Aligned_cols=223  Identities=87%  Similarity=1.330  Sum_probs=214.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++||||||+++|+.++|+.+|+|++++|+|||++||+|++||+++++++.+.++++..+...|..++|++||++
T Consensus       242 lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~  321 (464)
T PLN02509        242 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLC  321 (464)
T ss_pred             HHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999888877777777777777888999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +++|+|+..||+++++||+++++||++||.|++|+||||++||+|+++++|++|+|||+||++++.+.+++|+++|++|.
T Consensus       322 lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~  401 (464)
T PLN02509        322 LRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFS  401 (464)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHcCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  223 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~~  223 (223)
                      +++||||++||+++|++++|+.+++|+|++.||++++|||||||||+||||+||+|||++.++
T Consensus       402 ~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGlE~~~DLi~Dl~~Al~~~~~  464 (464)
T PLN02509        402 IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFRTGPL  464 (464)
T ss_pred             EcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHcccCC
Confidence            999999999999999999999999999999999999999999999999999999999998874

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.7e-63  Score=457.05  Aligned_cols=220  Identities=38%  Similarity=0.594  Sum_probs=204.0

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChh------------------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER------------------------   56 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~------------------------   56 (223)
                      +||++|++++||||+++|..++|+++|||++++|+|||++||+|++||+++.+++.                        
T Consensus       180 la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (437)
T PRK05613        180 VAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHG  259 (437)
T ss_pred             HHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCcccccc
Confidence            47999999999999999999999999999999999999999999999998865320                        


Q ss_pred             ----------H-HHHHHHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcch
Q 027424           57 ----------L-AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  125 (223)
Q Consensus        57 ----------~-~~~l~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~  125 (223)
                                + .+........+|.+++|++||+++|||+||.+||+++++||.+||+||++||+|++|+|||+++||+|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~  339 (437)
T PRK05613        260 LKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWY  339 (437)
T ss_pred             ccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCccH
Confidence                      0 01122345678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh-CCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec
Q 027424          126 ELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG  203 (223)
Q Consensus       126 ~~~~~~~-~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG  203 (223)
                      +++++|+ .|+||||||++ ++.+.+++|+++|++|..++||||++||+++|++++|+.+++|+|++.||++++||||||
T Consensus       340 ~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvG  419 (437)
T PRK05613        340 ATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVG  419 (437)
T ss_pred             HHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCeEEEEec
Confidence            9999996 78999999999 577889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhc
Q 027424          204 IEDVNDLISDLDKALRT  220 (223)
Q Consensus       204 lEd~~dL~~dl~~Al~~  220 (223)
                      |||++|||+||+|||++
T Consensus       420 lE~~~dLi~Dl~~Al~~  436 (437)
T PRK05613        420 IEDIDDIIADLEGGFAA  436 (437)
T ss_pred             cCCHHHHHHHHHHHHhh
Confidence            99999999999999986

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.5e-63  Score=456.90  Aligned_cols=222  Identities=41%  Similarity=0.689  Sum_probs=206.0

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhH-----------------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-----------------------   57 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~-----------------------   57 (223)
                      +||++|+++|||||+++|+.++|+++|+|+|++|+|||++||+|++||+++.+++..                       
T Consensus       174 la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (431)
T PRK08248        174 IAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYT  253 (431)
T ss_pred             HHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhh
Confidence            478999999999999999999999999999999999999999999999887654211                       


Q ss_pred             ---------HHHHHHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHH
Q 027424           58 ---------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  128 (223)
Q Consensus        58 ---------~~~l~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  128 (223)
                               ..........+|..++|+|||+++|||+||.+||+++++||.+||+||++||.|++|+|||+++||+|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~  333 (431)
T PRK08248        254 DAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELA  333 (431)
T ss_pred             hhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHH
Confidence                     11223455678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh-CCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC
Q 027424          129 YSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED  206 (223)
Q Consensus       129 ~~~~-~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd  206 (223)
                      ++|+ +|+||||||++ ++.+.+++|+++|++|.+++||||++||+++|++++|+.+++|+|+++||++++|||||||||
T Consensus       334 ~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd  413 (431)
T PRK08248        334 KKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGTEA  413 (431)
T ss_pred             HHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEEeccCC
Confidence            9999 68999999999 677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCC
Q 027424          207 VNDLISDLDKALRTGP  222 (223)
Q Consensus       207 ~~dL~~dl~~Al~~~~  222 (223)
                      +||||+||+|||+++.
T Consensus       414 ~~dL~~Dl~~Al~~~~  429 (431)
T PRK08248        414 IDDILDDLRQAIRQSQ  429 (431)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999999764

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=100.00  E-value=8.3e-63  Score=447.25  Aligned_cols=221  Identities=44%  Similarity=0.766  Sum_probs=212.5

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++||||||+++|..++|+++|+|++++|+|||++||+|+++|+++.+++++.++++.++..+|.+++|+++|++
T Consensus       161 la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~  240 (382)
T TIGR02080       161 LAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLT  240 (382)
T ss_pred             HHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999998888888888888888888999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +|+++|+..||+++++||..+++||++||.|++|+||||++||+|+++++|++|+||||||++ ++.+++.+|+++|++|
T Consensus       241 lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~  320 (382)
T TIGR02080       241 LRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLF  320 (382)
T ss_pred             HcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999 5678889999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      .+++||||++||+++|++++|+.+++++|++.||++++|||||||||++|||+||+|||+++
T Consensus       321 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~dl~~dl~~al~~~  382 (382)
T TIGR02080       321 TLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGLEDADDLIADLEQGLRAA  382 (382)
T ss_pred             eEeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999864

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2e-62  Score=445.13  Aligned_cols=220  Identities=44%  Similarity=0.678  Sum_probs=211.4

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++||||+|+++|+.++|+++|+|+|++|+|||++||+|++||+++++++++.++++..+...|..++|+++|++
T Consensus       162 la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~  241 (385)
T PRK08574        162 AAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLV  241 (385)
T ss_pred             HHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999987788888888888778888999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC--CCCeeEEEEe-CCHHHHHHHHhhcC
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLT-GSLALSKHVVETTK  157 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~--g~ggl~sf~~-~~~~~~~~f~~~l~  157 (223)
                      +++|+|+..|++++++||.++++||++||.|++|+||||++||+|+++++|++  |+||||||++ ++.+++++|+++|+
T Consensus       242 l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l~  321 (385)
T PRK08574        242 LRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLK  321 (385)
T ss_pred             HcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999996  7999999999 67889999999999


Q ss_pred             cceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          158 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       158 l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      +|.+++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||++
T Consensus       322 l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~  384 (385)
T PRK08574        322 LIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGLEDVEDLIEDLDQALGS  384 (385)
T ss_pred             cceEccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999986

>PRK05939 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-62  Score=446.15  Aligned_cols=221  Identities=31%  Similarity=0.483  Sum_probs=202.8

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecCh-------hH-------------HHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-------RL-------------AKE   60 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~-------~~-------------~~~   60 (223)
                      +||++|++++||||+++|..++|+++|+|+|++|+|||++||+|++||+++.+..       .+             ..+
T Consensus       156 la~~~gi~livD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (397)
T PRK05939        156 LCRERGLLYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQ  235 (397)
T ss_pred             HHHHcCCEEEEECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHH
Confidence            4789999999999999999999999999999999999999999999998864321       00             011


Q ss_pred             H-HHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeE
Q 027424           61 L-YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  139 (223)
Q Consensus        61 l-~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~  139 (223)
                      + ....+.+|..++|+|||+++|||+||.+||++|++||.+||+||++||+|++|+||||++||+|+++++|+.|+||||
T Consensus       236 ~~~~~~~~~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~  315 (397)
T PRK05939        236 IRKKGLRDMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLL  315 (397)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEE
Confidence            1 123357899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          140 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       140 sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      ||++++.+.+.+|++++++|.+++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||+
T Consensus       316 sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGlEd~~dLi~dl~~Al~  395 (397)
T PRK05939        316 SFELADGIDCFDFLNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGIEDEADLIADFEQALD  395 (397)
T ss_pred             EEEeCCHHHHHHHHHhCCcceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence            99996566889999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 027424          220 TG  221 (223)
Q Consensus       220 ~~  221 (223)
                      +.
T Consensus       396 ~~  397 (397)
T PRK05939        396 AT  397 (397)
T ss_pred             cC
Confidence            63

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=100.00  E-value=2.9e-62  Score=443.42  Aligned_cols=221  Identities=48%  Similarity=0.786  Sum_probs=213.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++|+.++|+++|+|++++|+|||++||+|+++|+++.+++++.++++..+...|..++|+++|++
T Consensus       159 la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~  238 (380)
T PRK06176        159 VAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLL  238 (380)
T ss_pred             HHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999888778888888888888999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +++++|+..||+++++||.++++||++||.|.+|+||+|++||+|+++++|++|+|||+||++++.+.+.+|+++|++|.
T Consensus       239 ~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~~~~  318 (380)
T PRK06176        239 QRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFI  318 (380)
T ss_pred             HhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999977888999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      +++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||+++
T Consensus       319 ~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~Al~~~  379 (380)
T PRK06176        319 LGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKI  379 (380)
T ss_pred             EccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999875

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=7e-62  Score=446.63  Aligned_cols=221  Identities=40%  Similarity=0.678  Sum_probs=203.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHH----------------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA----------------------   58 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~----------------------   58 (223)
                      +||++|++||||||+++|+.++|+++|||||++|+|||++||+|++||+++.++...+                      
T Consensus       168 la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (425)
T PRK06084        168 AAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTY  247 (425)
T ss_pred             HHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchh
Confidence            4789999999999999999999999999999999999999999999998876432100                      


Q ss_pred             -----------HHHHHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHH
Q 027424           59 -----------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  127 (223)
Q Consensus        59 -----------~~l~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~  127 (223)
                                 .........+|..++|++||+++|+|+||..||+++++||+++|+||++||+|++|+|||+++||+|++
T Consensus       248 ~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~  327 (425)
T PRK06084        248 TEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHEL  327 (425)
T ss_pred             hhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHH
Confidence                       001122456799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCC-CCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC
Q 027424          128 HYSQAKG-AGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE  205 (223)
Q Consensus       128 ~~~~~~g-~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE  205 (223)
                      +++|++| +||||||++ ++.+++++|+++|++|.+++||||++||+++|++++|+.+++|+|++.||++++||||||||
T Consensus       328 ~~~~~~g~~gg~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svGlE  407 (425)
T PRK06084        328 ARRYMGGKPASILSFGIKGGQAAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGIE  407 (425)
T ss_pred             HHHhCCCCcceEEEEEecCCHHHHHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccC
Confidence            9999988 899999999 67788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcC
Q 027424          206 DVNDLISDLDKALRTG  221 (223)
Q Consensus       206 d~~dL~~dl~~Al~~~  221 (223)
                      |++|||+||+|||+++
T Consensus       408 d~~dLi~dl~~Al~~~  423 (425)
T PRK06084        408 HIDDIIADLAQALDAS  423 (425)
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999999875

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2.5e-61  Score=440.51  Aligned_cols=221  Identities=44%  Similarity=0.749  Sum_probs=212.0

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++|..++|+++|||++++|+|||++||+|+++|+++.+++++.+++...+...|..++|+++|++
T Consensus       170 la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~  249 (405)
T PRK08776        170 AAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLT  249 (405)
T ss_pred             HHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47899999999999999998999999999999999999999999999999888888888888777788888999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +++++|+..|++++++|+..+++||++||.|++|+||++++||+|+++++|++|+|||+||++ ++.+++++|+|+|++|
T Consensus       250 ~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~  329 (405)
T PRK08776        250 LRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRYF  329 (405)
T ss_pred             HhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999 6778899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      .+++||||++||+++|++++|+.+++|+|++.||++++|||||||||+||||+||+|||+++
T Consensus       330 ~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~~  391 (405)
T PRK08776        330 TLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGIESAEDLLIDLRAGLARA  391 (405)
T ss_pred             eEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999865

>PRK06434 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=2e-61  Score=438.25  Aligned_cols=212  Identities=36%  Similarity=0.630  Sum_probs=202.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|  ++||||+++|++++|+.+|||++++|+|||++||+|++||+|+++++++.++++..+...|..++|++||++
T Consensus       173 la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~  250 (384)
T PRK06434        173 FCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLA  250 (384)
T ss_pred             HHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            478887  678999999999999999999999999999999999999999888888888888777788999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +++|+|+..||+++++||+++++||++||+|++|+||||+      ++++|++|+|||+||++++.+.+++|+++|++|.
T Consensus       251 ~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~l~~  324 (384)
T PRK06434        251 LRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLRGFGGMLSFELRSMEDVHKFIRNLEIPM  324 (384)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcCCCCceEEEEECCHHHHHHHHHhCCcce
Confidence            9999999999999999999999999999999999999995      8999999999999999977888999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      +++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||++
T Consensus       325 ~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGlEd~~dLi~dl~~Al~~  384 (384)
T PRK06434        325 VAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGIEDIDDLIKDIENALSK  384 (384)
T ss_pred             EccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999974

>PRK07671 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.3e-61  Score=435.32  Aligned_cols=219  Identities=51%  Similarity=0.858  Sum_probs=211.9

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||++++++++|+++|+||+++|+|||++||+|+++|+++++++++.++++..+...|..++|+++|++
T Consensus       159 la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~  238 (377)
T PRK07671        159 IAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLL  238 (377)
T ss_pred             HHHHcCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999998888878888888888888999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +|+++|+..||+++++||..|++||++||.|.+|+||++++||+|+++++|++|+||||||++++.+.+.+|++++++|.
T Consensus       239 ~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~l~~  318 (377)
T PRK07671        239 LRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQYFT  318 (377)
T ss_pred             HcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCCHHHHHHHHHhCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      +++||||++||+++|+.++|+.+++|+|++.||++++|||||||||++|||+||+|||+
T Consensus       319 ~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~  377 (377)
T PRK07671        319 LAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGIEDGEDLIEDLAQALA  377 (377)
T ss_pred             EccCCCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999985

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=4.7e-61  Score=437.91  Aligned_cols=221  Identities=40%  Similarity=0.709  Sum_probs=211.0

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++|+.++|+.+|+|+|++|+||+++||+|.+||+++. ++++.++++..+...|..++|+++|++
T Consensus       174 la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~  252 (398)
T PRK08249        174 AAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLI  252 (398)
T ss_pred             HHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            4789999999999999999999999999999999999999999999998865 567888888888888999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +++++|+..|++++++||+.+++||++||.|++|+||||++||+|+++++|++|+||||||++ ++.+.+++|+++|++|
T Consensus       253 l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~  332 (398)
T PRK08249        253 LRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYA  332 (398)
T ss_pred             HhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999 5778899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  222 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~  222 (223)
                      .+++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||++++
T Consensus       333 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~  395 (398)
T PRK08249        333 HRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIEDTEDLIADLEQAFAHLE  395 (398)
T ss_pred             eEccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999998754

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=9.5e-61  Score=439.93  Aligned_cols=222  Identities=39%  Similarity=0.633  Sum_probs=203.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChh------------------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER------------------------   56 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~------------------------   56 (223)
                      +||++|+++|||||+++|++++|+++|||++++|+|||++||+|++||+++.+...                        
T Consensus       174 la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  253 (433)
T PRK08134        174 IAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFA  253 (433)
T ss_pred             HHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchh
Confidence            47999999999999999999999999999999999999999999999988743210                        


Q ss_pred             -------HHH-HHHHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHH
Q 027424           57 -------LAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  128 (223)
Q Consensus        57 -------~~~-~l~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  128 (223)
                             +.. ........+|..++|++||+++++|+|+..||+++++||.++++||++||.|++|+||++++||+|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~  333 (433)
T PRK08134        254 EESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALA  333 (433)
T ss_pred             hccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence                   000 011123567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh-CCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC
Q 027424          129 YSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED  206 (223)
Q Consensus       129 ~~~~-~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd  206 (223)
                      ++|+ +|+||||||++ ++.+.+++|+++|++|.+++|||+++||+++|++++|+.+++|+|++.||++++|||||||||
T Consensus       334 ~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGlE~  413 (433)
T PRK08134        334 KRLLPRGAGSVFSFDLKGGRAAGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGLED  413 (433)
T ss_pred             HHhCCCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEEeccCC
Confidence            9999 78999999999 567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCC
Q 027424          207 VNDLISDLDKALRTGP  222 (223)
Q Consensus       207 ~~dL~~dl~~Al~~~~  222 (223)
                      +||||+||+|||++++
T Consensus       414 ~~dli~dl~~Al~~~~  429 (433)
T PRK08134        414 ADDLIDDLKRALKAAE  429 (433)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999999753

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.5e-60  Score=438.13  Aligned_cols=221  Identities=41%  Similarity=0.699  Sum_probs=203.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecCh-----------------h-----HH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----------------R-----LA   58 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~-----------------~-----~~   58 (223)
                      +||++|+++|||||+++|+.++|+++|||+|++|+|||++||+|++||+++.++.                 .     +.
T Consensus       173 la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  252 (427)
T PRK05994        173 VAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLH  252 (427)
T ss_pred             HHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHH
Confidence            4789999999999999999999999999999999999999999999998875321                 0     11


Q ss_pred             HH----------HHHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHH
Q 027424           59 KE----------LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  128 (223)
Q Consensus        59 ~~----------l~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  128 (223)
                      +.          .....+..|..++|++||+++|+|+||..||+++++||+++++||++||+|++|+|||+++||+|+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~  332 (427)
T PRK05994        253 ETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALA  332 (427)
T ss_pred             HHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence            11          11124567999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh-CCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC
Q 027424          129 YSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED  206 (223)
Q Consensus       129 ~~~~-~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd  206 (223)
                      ++|+ +|+||||||++ ++.+++++|+++|++|.+++||||++||+++|++++|+.+++|+|++.||++++|||||||||
T Consensus       333 ~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE~  412 (427)
T PRK05994        333 QKYSPKGAGAVFTFGLKGGYEAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGIED  412 (427)
T ss_pred             HHhcCCCceEEEEEEecCCHHHHHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEEeccCC
Confidence            9996 78999999999 577889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 027424          207 VNDLISDLDKALRTG  221 (223)
Q Consensus       207 ~~dL~~dl~~Al~~~  221 (223)
                      ++|||+||+|||+++
T Consensus       413 ~~dli~dl~~Al~~~  427 (427)
T PRK05994        413 VDDIIADLEQALAKA  427 (427)
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999999864

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=100.00  E-value=1.4e-60  Score=435.36  Aligned_cols=218  Identities=39%  Similarity=0.648  Sum_probs=207.6

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++||||||+++|+.++|+++|+|++|+|+|||++||+|++||+++++++.+.++++.+....|..++|+++|++
T Consensus       180 la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~  259 (403)
T PRK07810        180 LAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVL  259 (403)
T ss_pred             HHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999887765555677666778999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-C----CHHHHHHHHhh
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-G----SLALSKHVVET  155 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~----~~~~~~~f~~~  155 (223)
                      +++|+|+..|++++++||.++++||++||.|++|+||||++||+|++++||++|+|||+||++ +    +.+.+.+|+++
T Consensus       260 l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~  339 (403)
T PRK07810        260 LKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDK  339 (403)
T ss_pred             HhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999 4    47889999999


Q ss_pred             cCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 027424          156 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  218 (223)
Q Consensus       156 l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al  218 (223)
                      |++|.+++|||+++||+++|++++|+.+++|++++.||++++|||||||||++|||+||+|||
T Consensus       340 l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGlE~~~dli~dl~~Al  402 (403)
T PRK07810        340 LRVIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIADLDRAL  402 (403)
T ss_pred             CCceEEeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999998

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=100.00  E-value=1.5e-60  Score=434.53  Aligned_cols=222  Identities=36%  Similarity=0.626  Sum_probs=210.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++++.++|+++|+|++++|+|||++||++.+||+++.+++.+.+.++......|..++|+++|++
T Consensus       175 la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~  254 (398)
T PRK07504        175 IANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTL  254 (398)
T ss_pred             HHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999998877655555566666778999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +++|+|+..|++++++||+.+++||++||.|.+|+||||++||+|+++++|++|+|||+||++ ++.+++++|+++|++|
T Consensus       255 l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~  334 (398)
T PRK07504        255 LKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIV  334 (398)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999 6788899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  222 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~  222 (223)
                      ..++||||++||+++|++++|+.+++|+|++.||++++|||||||||+||||+||+|||+++.
T Consensus       335 ~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~  397 (398)
T PRK07504        335 RISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAAALKKVR  397 (398)
T ss_pred             eecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999999999764

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=100.00  E-value=3.2e-60  Score=429.74  Aligned_cols=222  Identities=77%  Similarity=1.190  Sum_probs=213.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++|+.++|+++|+|++++|+|||++||+|+++|+++++++++.++++..+...|..++|+++|++
T Consensus       156 la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~  235 (378)
T TIGR01329       156 MAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLL  235 (378)
T ss_pred             HHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999888887878888777778999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +++++|+..|++++++||..+++||++||.|++|+||+|++||+|+++++++.|+||||||++++.+.+.+|+++|++|.
T Consensus       236 ~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~  315 (378)
T TIGR01329       236 LRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFS  315 (378)
T ss_pred             HccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999988888999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCC
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  222 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~  222 (223)
                      +++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||++++
T Consensus       316 i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~  377 (378)
T TIGR01329       316 ITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAFVTAP  377 (378)
T ss_pred             cccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999886

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=100.00  E-value=9.6e-60  Score=426.67  Aligned_cols=217  Identities=45%  Similarity=0.748  Sum_probs=207.0

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++||||+|+++|+.++|+++|+|||++|+||+++||++++||+++.++ ++.++++......|..++|+++|++
T Consensus       164 la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~-~~~~~l~~~~~~~g~~~~p~~a~~~  242 (380)
T TIGR01325       164 LAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSE-ELMAEVAVYLRHTGPAMSPFNAWVL  242 (380)
T ss_pred             HHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCH-HHHHHHHHHHHhhCCCCCHHHHHHH
Confidence            478999999999999999999999999999999999999999999999887655 5667777666778989999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +++++|+..|++++++||..+++||++||.|++|+||++++||+|++++||+.|+||||||++++.+.+++|+++|++|.
T Consensus       243 l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~l~~~~  322 (380)
T TIGR01325       243 LKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADRAAAWKVLDAVELVS  322 (380)
T ss_pred             HhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999987888999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  218 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al  218 (223)
                      +++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||
T Consensus       323 ~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al  380 (380)
T TIGR01325       323 ITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVGLEDVDDLIADLKRAL  380 (380)
T ss_pred             EcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999997

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=100.00  E-value=1.1e-59  Score=427.69  Aligned_cols=219  Identities=42%  Similarity=0.767  Sum_probs=207.8

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||+|+++|..++|+++|+|++++|+|||++||++++||+++.++ ++.+++.......|..++|+++|++
T Consensus       171 la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~-~~~~~~~~~~~~~g~~~~~~~a~~~  249 (390)
T PRK08133        171 IAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSK-ELMEEVFGFLRTAGPTLSPFNAWVF  249 (390)
T ss_pred             HHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCH-HHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            478999999999999999999999999999999999999999999999997665 4556666666778989999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +++++|+..|++++++|+..+++||++||.|++|+||||++||+|+++++|++|+|||+||++ ++.+.+.+|++++++|
T Consensus       250 l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~  329 (390)
T PRK08133        250 LKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLI  329 (390)
T ss_pred             HcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999 5788899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      .+++||||++||+++|++++|+.+++|+|++.||++++|||||||||+||||+||+|||++
T Consensus       330 ~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~  390 (390)
T PRK08133        330 SITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGLEDVADIKADLARGLAA  390 (390)
T ss_pred             eEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999974

>PRK07049 methionine gamma-lyase; Validated

Probab=100.00  E-value=5.2e-59  Score=427.87  Aligned_cols=216  Identities=38%  Similarity=0.678  Sum_probs=206.3

Q ss_pred             cCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHHHhcH
Q 027424            5 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV   84 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll~~~l   84 (223)
                      +|+++||||||.+|+.++|+++|+|||++|+|||++||+++.+|+++. ++++.++++..+..+|.+++|+++|+++++|
T Consensus       209 ~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~vv~-~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L  287 (427)
T PRK07049        209 HRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLG-RKALIRQVRALRSAIGTQLDPHSCWMLGRSL  287 (427)
T ss_pred             CCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC
Confidence            789999999999999999999999999999999999999999999875 4567788888888889999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCC--CCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCccee
Q 027424           85 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL--PEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSI  161 (223)
Q Consensus        85 ~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l--~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~  161 (223)
                      +|+..|++++++|+..+++||++||+|.+|+|||+  ++||+|+++++|++|+||||||++ ++.+.+++|+++|++|.+
T Consensus       288 ~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~  367 (427)
T PRK07049        288 ETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKL  367 (427)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCcccEE
Confidence            99999999999999999999999999999999986  999999999999999999999999 577889999999999999


Q ss_pred             ccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          162 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       162 ~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      ++||||++||+++|++++|+.+++|+|++.||++++|||||||||+||||+||+|||+++
T Consensus       368 ~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  427 (427)
T PRK07049        368 AVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIEHPDDLIADLAQALDAA  427 (427)
T ss_pred             cccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999864

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=100.00  E-value=9.1e-59  Score=420.19  Aligned_cols=215  Identities=28%  Similarity=0.506  Sum_probs=197.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++|+.++|+++|||+|++|+|||++||+|++||+++.++ +.+++++......|.+++|+++|++
T Consensus       160 la~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~-~~~~~l~~~~~~~G~~l~p~~a~~~  238 (377)
T TIGR01324       160 AARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANA-RTWDQLREHSYLMGQMVDADDAYTT  238 (377)
T ss_pred             HHHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCH-HHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            478999999999999999999999999999999999999999999999887765 4556676667788999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-C-CHHHHHHHHhhcCc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-G-SLALSKHVVETTKY  158 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~-~~~~~~~f~~~l~l  158 (223)
                      +|+++|+..||+++++||.++|+||++||.|++|+||||++||+|+++++|++|+|||+||++ + +.+.+.+|+++|++
T Consensus       239 ~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~  318 (377)
T TIGR01324       239 LRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQL  318 (377)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999 4 67889999999999


Q ss_pred             ceeccccCCCCCCCCCCc-cccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          159 FSITVSFGSVKSLISMPC-FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       159 ~~~~~s~G~~~sli~~p~-~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      |.+++||||++||+++|. .++|.     .+.+.|+.+++|||||||||++|||+||+|||++.
T Consensus       319 ~~~~~slG~~~sl~~~~~~~~~~~-----~~~~~~~~~~liR~svGlE~~~dl~~dl~~al~~~  377 (377)
T TIGR01324       319 FGLGYSWGGYESLALCNQPELGHR-----PNIKRNLEGPLIRVHIGLENVDDLKADLKAGFEAI  377 (377)
T ss_pred             ceEeccCCCccceeecCCCCCCHH-----HHHhccCCCCEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence            999999999999997432 56664     34577899999999999999999999999999863

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=100.00  E-value=1.1e-58  Score=421.33  Aligned_cols=219  Identities=42%  Similarity=0.806  Sum_probs=205.4

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH--HHhcCCCCChHhHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGLAPFDCW   78 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~--~~~~g~~~sp~da~   78 (223)
                      +||++|+++|||+|+++|+.++|+.+|+|+|++|+||+++||++.+||+++.+ +++.++++..  ....|..++|+++|
T Consensus       169 la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~-~~li~~l~~~~~~~~~g~~l~~~~a~  247 (391)
T TIGR01328       169 DAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGK-AELLQQIRMVGIKDMTGSVISPFDAW  247 (391)
T ss_pred             HHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcC-HHHHHHHHHHHHHhCCCCCCCcHHHH
Confidence            47899999999999999999999999999999999999999999999988654 5666666643  23457789999999


Q ss_pred             HHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcC
Q 027424           79 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTK  157 (223)
Q Consensus        79 ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~  157 (223)
                      +++++|+++..|++++++||+.+++||++||.|++|+||||++||+|+++++|++|+||||||++ ++.+++++|+++|+
T Consensus       248 l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~  327 (391)
T TIGR01328       248 LILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLK  327 (391)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999 57788999999999


Q ss_pred             cceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          158 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       158 l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      +|.+++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||++
T Consensus       328 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~  390 (391)
T TIGR01328       328 LIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGLEDADDLIADLKQALDA  390 (391)
T ss_pred             cceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999985

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=100.00  E-value=1e-58  Score=424.86  Aligned_cols=219  Identities=42%  Similarity=0.716  Sum_probs=200.9

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChh------------------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER------------------------   56 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~------------------------   56 (223)
                      +||++|+++|||||++++++++|+++|+|+|++|+||+++||++++||+++.++..                        
T Consensus       167 la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~  246 (418)
T TIGR01326       167 VAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTE  246 (418)
T ss_pred             HHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCccccchhhh
Confidence            47899999999999999999999999999999999999999999999988743210                        


Q ss_pred             -------HHHHHHHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHH
Q 027424           57 -------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  129 (223)
Q Consensus        57 -------~~~~l~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~  129 (223)
                             +.+......+..|..++|+++|+++++++|+..||+++++||.++|+||.+||+|.+|+|||+++||+|++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~~~~~~~  326 (418)
T TIGR01326       247 TFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHPHHALAK  326 (418)
T ss_pred             hhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHH
Confidence                   0011112345679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh-CCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCH
Q 027424          130 SQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV  207 (223)
Q Consensus       130 ~~~-~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~  207 (223)
                      +|+ .|+||||||++ ++.+.+++|+++|++|..++||||++||+++|++++|+.+++++|++.||++++|||||||||+
T Consensus       327 ~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~  406 (418)
T TIGR01326       327 KYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVGIENI  406 (418)
T ss_pred             HhccCCCcceEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecCCCH
Confidence            999 78999999999 6778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027424          208 NDLISDLDKALR  219 (223)
Q Consensus       208 ~dL~~dl~~Al~  219 (223)
                      +|||+||+|||+
T Consensus       407 ~dl~~dl~~Al~  418 (418)
T TIGR01326       407 DDIIADLEQALE  418 (418)
T ss_pred             HHHHHHHHHhhC
Confidence            999999999985

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.5e-58  Score=420.04  Aligned_cols=217  Identities=47%  Similarity=0.789  Sum_probs=206.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++||||||+++++.++|+++|+|++++|+|||++||+|+++|+++++++++.++++..+...|..++|+++|++
T Consensus       171 la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~  250 (388)
T PRK07811        171 LAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLT  250 (388)
T ss_pred             HHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47899999999999999998999999999999999999999999999998888888888887777778989999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +++|+++..|++++++||+.+++||++||.|++|+|||+++||+|+++++|++|+||||||++ ++.+.+.+|+++|++|
T Consensus       251 ~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~  330 (388)
T PRK07811        251 LRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVF  330 (388)
T ss_pred             HhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999 5788899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      .+++||||++||+++|++++|+.++++   +.||++++|||||||||++|||+||+|||++
T Consensus       331 ~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~gi~~~liR~svGlE~~~dl~~dl~~al~~  388 (388)
T PRK07811        331 TLAESLGGVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLADLEQALGQ  388 (388)
T ss_pred             eeeccCCCCcceEeCCcccCcccCCHh---hcCCCCCEEEEEeCCCCHHHHHHHHHHHhhC
Confidence            999999999999999999999999865   4599999999999999999999999999974

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=100.00  E-value=6.9e-58  Score=412.71  Aligned_cols=219  Identities=55%  Similarity=0.914  Sum_probs=210.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++|+|||||++|++++|+++|+|+|++|+||+++||+|+++|+++++++++.++++..+..+|..++|.++|++
T Consensus       150 la~~~g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~  229 (369)
T cd00614         150 LAHEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLL  229 (369)
T ss_pred             HHHHcCCEEEEECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999887757878888777788999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +++|+++..|++++++|++++++||++||.|.+|+||++++||+|+++++|++|+|+|+||++ ++.+.+.+|+++|++|
T Consensus       230 l~~l~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~  309 (369)
T cd00614         230 LRGLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLF  309 (369)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999 4788999999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      .+++||||++||+++|++++|+.+++++++..||++++|||||||||++|||+||+|||+
T Consensus       310 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGlE~~~dl~~dl~~al~  369 (369)
T cd00614         310 SLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDLIADLEQALK  369 (369)
T ss_pred             eEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999985

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK06460 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-57  Score=412.40  Aligned_cols=220  Identities=44%  Similarity=0.702  Sum_probs=208.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||+|+++|+.+.|+++|+||+++|+||+++||+|.++|+++. ++++.++++..+..+|.+++|.++|++
T Consensus       155 la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~-~~~l~~~l~~~~~~~g~~~~~~~a~~~  233 (376)
T PRK06460        155 VCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAG-YGKLLNVIDQMRRTLGTSLDPHAAYLT  233 (376)
T ss_pred             HHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEec-CHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            4789999999999999998889999999999999999999999999998865 456778887777788888999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +++++++..|++++++|+..+++||++||.|++|+||||++||+|+++++|++|+||||||++ ++.+.+.+|++++++|
T Consensus       234 l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~  313 (376)
T PRK06460        234 LRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLI  313 (376)
T ss_pred             HhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999 5678899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      .+++||||++||+++|++++|+.+++|+|++.||++++|||||||||+||||+||+|||++.
T Consensus       314 ~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  375 (376)
T PRK06460        314 IPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLDRALSTL  375 (376)
T ss_pred             eeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999864

>PRK06234 methionine gamma-lyase; Provisional

Probab=100.00  E-value=3.2e-57  Score=412.84  Aligned_cols=220  Identities=40%  Similarity=0.698  Sum_probs=206.2

Q ss_pred             Ccccc--CCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH--HHhcCCCCChHh
Q 027424            1 MAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGLAPFD   76 (223)
Q Consensus         1 ia~~~--g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~--~~~~g~~~sp~d   76 (223)
                      +||++  |+++|||||+++++..+|+++|+||+++|+||+++||+++++|++++++ ++.++++..  +...|..++|++
T Consensus       174 la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~-~~~~~l~~~~~~~~~g~~l~p~~  252 (400)
T PRK06234        174 IAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKE-EFINQVKLFGIKDMTGSVIGPFE  252 (400)
T ss_pred             HHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecH-HHHHHHHHHHHHHhcCCCCCHHH
Confidence            36776  9999999999999999999999999999999999999999999987765 566766542  456788999999


Q ss_pred             HHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhh
Q 027424           77 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVET  155 (223)
Q Consensus        77 a~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~  155 (223)
                      +|+++++|+|+..|++++++||+++++||++||.|.+|+||+|++||+|+++++|++|+|||+||++ ++.+.+.+|+++
T Consensus       253 a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~  332 (400)
T PRK06234        253 AFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNN  332 (400)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 567888999999


Q ss_pred             cCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          156 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       156 l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      |++|.+++||||++||+++|++++|..+++|+|++.||++++|||||||||++|||+||+|||+++
T Consensus       333 l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~~  398 (400)
T PRK06234        333 VKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIADLKQALDLI  398 (400)
T ss_pred             CCcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999864

>PRK08064 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.2e-57  Score=410.86  Aligned_cols=221  Identities=49%  Similarity=0.823  Sum_probs=212.6

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||+|+++|+.++|+++|+|++++|+||+++||+|+++|+++++++++.++++..+...|..++|+++|++
T Consensus       163 la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~  242 (390)
T PRK08064        163 LAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLV  242 (390)
T ss_pred             HHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999998888878888888888888999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +++++|+..||+++++|+..+++||++||.|.+|+||+|++||+|+++++|++|+|||+||++++.+.+.+|+|++++|.
T Consensus       243 ~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~  322 (390)
T PRK08064        243 LRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPV  322 (390)
T ss_pred             HcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999987888999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      +++||||++||+++|++++|+.+++++|.+.||++++||+||||||++|||+||+|||+++
T Consensus       323 ~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        323 FAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             EcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999865

>PRK07503 methionine gamma-lyase; Provisional

Probab=100.00  E-value=5.6e-57  Score=411.64  Aligned_cols=220  Identities=41%  Similarity=0.737  Sum_probs=207.8

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH--HHHhcCCCCChHhHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCW   78 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~--~~~~~g~~~sp~da~   78 (223)
                      +||++|++||||+|+++|+.++|+.+|+|++++|+||+++||+|+++|+++ .++++.++++.  .+...|..++|+++|
T Consensus       175 la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~-~~~~l~~~l~~~~~~~~~g~~~s~~~a~  253 (403)
T PRK07503        175 IAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVV-GGKALADRIRLEGLKDMTGAVMSPFDAF  253 (403)
T ss_pred             HHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEE-cCHHHHHHHHhhhHHhCcCCCCCHHHHH
Confidence            478999999999999999999999999999999999999999999999887 55667777763  356678899999999


Q ss_pred             HHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcC
Q 027424           79 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTK  157 (223)
Q Consensus        79 ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~  157 (223)
                      +++++|+++..|++++++||..+++||++||.|++|+||++++||+|+++++|+.|+|||+||++ ++.+.+.+|+++++
T Consensus       254 l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~l~  333 (403)
T PRK07503        254 LLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQ  333 (403)
T ss_pred             HHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999 67788899999999


Q ss_pred             cceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          158 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       158 l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      +|.+++|||++|||+++|.+++|+.+++|+|++.||++++|||||||||++|||+||+|||+++
T Consensus       334 l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~Al~~~  397 (403)
T PRK07503        334 LFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGLEDVADILADLAQALDAC  397 (403)
T ss_pred             cceeecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999865

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=2.6e-56  Score=402.45  Aligned_cols=203  Identities=47%  Similarity=0.821  Sum_probs=194.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++||||||++|+.++|+++|||||++|+|||++||+|++||+|+++++++.++++..+...|..++|++||++
T Consensus       161 la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~  240 (364)
T PRK07269        161 LAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLL  240 (364)
T ss_pred             HHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999888888888888777788999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +++|+||..|++++++||+++++||++||.|.+|+|||                .|||+||++++.+++++|++++++|.
T Consensus       241 ~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg----------------~gg~~sf~~~~~~~~~~f~~~l~~~~  304 (364)
T PRK07269        241 MRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG----------------KGGMISFKVADETRIPHILNSLKVFT  304 (364)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC----------------cCcEEEEEECCHHHHHHHHHhCCcce
Confidence            99999999999999999999999999999999999996                49999999977888999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      +++|||+++||+++|++++|+.+++++|...||++++|||||||||++|||+||+|||+
T Consensus       305 ~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGlE~~~dli~dl~~al~  363 (364)
T PRK07269        305 FAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDLIADLKQALE  363 (364)
T ss_pred             EccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999996

>PRK07050 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.6e-55  Score=401.00  Aligned_cols=215  Identities=31%  Similarity=0.497  Sum_probs=201.6

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++|++|||+++|.+++|+++|+|++++|+|||++||+|+++|+++++++++.++++..+...|.+++|+++|++
T Consensus       175 ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~  254 (394)
T PRK07050        175 AARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLV  254 (394)
T ss_pred             HHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999888888888888888888999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC---CHHHHHHHHhhcC
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---SLALSKHVVETTK  157 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~---~~~~~~~f~~~l~  157 (223)
                      +|+|+|+..||+++++||.+||+||++||.|.+|+||+|++||+|+++++|+.|+|+|++|+++   +.+.+++|+++++
T Consensus       255 lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~  334 (394)
T PRK07050        255 LRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALE  334 (394)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999994   4688999999999


Q ss_pred             cceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          158 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       158 l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      ++.+++||||++||++ |++++|...+     +.++.+++|||||||||+||||+||+|||+++
T Consensus       335 ~~~~~~s~G~~~sl~~-~~~~~~~~~~-----~~~~~~~~iR~svGlE~~~dl~~dl~~al~~~  392 (394)
T PRK07050        335 LFAIGWSWGGACSLAM-PYDVASMRTA-----KWPHRGTLVRLYIGLEDEADLIADLEQALEAA  392 (394)
T ss_pred             CCeeccccCCccceEe-eCcccccchh-----hcCCCCCEEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            9999999999999997 8888887653     23377899999999999999999999999864

>PRK06767 methionine gamma-lyase; Provisional

Probab=100.00  E-value=5.6e-55  Score=396.24  Aligned_cols=214  Identities=44%  Similarity=0.747  Sum_probs=200.9

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++|+||||+++|+.++|+++|+|++++|+|||++||++++||+++++++.+.+.++..+...|..++|+++|++
T Consensus       171 la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~  250 (386)
T PRK06767        171 VAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLL  250 (386)
T ss_pred             HHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999877655544445566778888999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +++|+|+..|++++.+|+..+++||++||+|++|+||      +|+++++|++++|||+||++ ++.+.+++|+++|++|
T Consensus       251 ~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~  324 (386)
T PRK06767        251 LRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFI  324 (386)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCcc
Confidence            9999999999999999999999999999999999999      78999999999999999999 5678899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      .+++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||++
T Consensus       325 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~  385 (386)
T PRK06767        325 TIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQALKK  385 (386)
T ss_pred             EEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999985

>PRK07582 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=1.4e-54  Score=391.24  Aligned_cols=209  Identities=38%  Similarity=0.618  Sum_probs=194.4

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++|+.++|+++|+|++++|+|||++||+++++|+++++++++.++++.++...|.+++|+++|++
T Consensus       157 ~a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~  236 (366)
T PRK07582        157 AAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLA  236 (366)
T ss_pred             HHHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            47889999999999999999999999999999999999999999999998877778888888888888999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +|+|+|+..||+++++||+++++||++||+|++|+||||++||+|+++++|++|+||||||++++.+++.+|++++++|.
T Consensus       237 ~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l~~~~  316 (366)
T PRK07582        237 HRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAASRLVV  316 (366)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      .++||||++||+.++..           ...++++++||+||||||++|||+||+|||++
T Consensus       317 ~~~s~G~~~sl~~~~~~-----------~~~~~~~~liR~svGlE~~~dli~dl~~al~~  365 (366)
T PRK07582        317 AATSFGGVHTSADRRAR-----------WGDAVPEGFVRLSCGIEDTDDLVADLERALDA  365 (366)
T ss_pred             ecccCCCccchhhhHHH-----------cCCCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            99999999999744321           12347899999999999999999999999986

>PLN02242 methionine gamma-lyase

Probab=100.00  E-value=1.8e-53  Score=390.24  Aligned_cols=219  Identities=29%  Similarity=0.435  Sum_probs=202.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH----HhcCCCCChHh
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----NAEGSGLAPFD   76 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~----~~~g~~~sp~d   76 (223)
                      +||++|++||||||+ +++.++|+++|+||+++|+||+++||+++++|++++ ++++.++++..+    ...|..++|++
T Consensus       188 la~~~gi~livDea~-~~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~-~~~li~~l~~~~~~~~~~~g~~~~~~~  265 (418)
T PLN02242        188 IAHEKGVTVVVDNTF-APMVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PAELVNSMMDLHHGALMLLGPTMNPKV  265 (418)
T ss_pred             HHHHhCCEEEEECCC-CccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEc-CHHHHHHHHHHhhhhhhccCCCCCHHH
Confidence            478999999999999 578889999999999999999999999999998875 456766666553    35688899999


Q ss_pred             HHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh---CCCCeeEEEEeCCHHHHHHHH
Q 027424           77 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA---KGAGSVLSFLTGSLALSKHVV  153 (223)
Q Consensus        77 a~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~---~g~ggl~sf~~~~~~~~~~f~  153 (223)
                      ||+++++++|+..|++++++|+..+++||++|+  .+|+||||++||+|+++++|+   .|+||||||++++.+.+.+|+
T Consensus       266 A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~--~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~  343 (418)
T PLN02242        266 AFELSERLPHLSLRMKEHCRRAMEYAKRMKELG--LKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLM  343 (418)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC--CEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHH
Confidence            999999999999999999999999999999997  499999999999999999999   599999999998888999999


Q ss_pred             hhcCcc----eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHHhcCCC
Q 027424          154 ETTKYF----SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDKALRTGPL  223 (223)
Q Consensus       154 ~~l~l~----~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd-~~dL~~dl~~Al~~~~~  223 (223)
                      +++++|    .+++|||+++||+++|++++|..+++|+|+..||++++||||||||| ++|||+||+|||+++.+
T Consensus       344 ~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~~dli~dl~~al~~~~~  418 (418)
T PLN02242        344 RYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTGTLEQRWSQFEKALSAMKL  418 (418)
T ss_pred             HHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCCCHHHHHHHHHHHHHHhhC
Confidence            999977    89999999999999999999999999999999999999999999995 99999999999998754

>PRK05968 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-51  Score=374.30  Aligned_cols=215  Identities=33%  Similarity=0.570  Sum_probs=196.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-HhcCCCCChHhHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCWI   79 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~~~g~~~sp~da~l   79 (223)
                      +||++|++|+||||+++++.++|+++|+|+|++|+||+++||+|+++|+++.+ +++.++++... ...|..++|+++|+
T Consensus       172 la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~-~~~~~~l~~~~~~~~g~~~~~~~A~~  250 (389)
T PRK05968        172 LAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGS-KEHIARINAEAYPYLGAKLSPFEAWL  250 (389)
T ss_pred             HHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEEC-HHHHHHHHHHHHHhCCCCCChHHHHH
Confidence            47899999999999999998999999999999999999999999999988754 45666666543 35788899999999


Q ss_pred             HHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcc
Q 027424           80 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF  159 (223)
Q Consensus        80 l~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~  159 (223)
                      ++++|+++..|++++++||+++++||++||.|++|+||++++||     ++++.|+|||+||++++...+.+|+++|+++
T Consensus       251 ~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~-----~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~  325 (389)
T PRK05968        251 LLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHP-----PAGLSGTSGLFSFIFREGIDVRAFADALKLF  325 (389)
T ss_pred             HHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCh-----HHhCCCCceEEEEEECCHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999999998     4567899999999996555789999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCC-CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCC
Q 027424          160 SITVSFGSVKSLISMPCFMSHAS-IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  222 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~-~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~  222 (223)
                      .+++|||+++||++ |++++|.. ++++++++.||++++||+||||||++|||+||+|||+++.
T Consensus       326 ~~~~s~G~~~slv~-p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~~~  388 (389)
T PRK05968        326 RLGVSWGGHESLVV-PAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAAAS  388 (389)
T ss_pred             EEecCCCCCCceee-eCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHhh
Confidence            99999999999998 99999988 5588999999999999999999999999999999999764

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=1.2e-48  Score=352.45  Aligned_cols=205  Identities=46%  Similarity=0.802  Sum_probs=193.8

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++|||||+++|++++|+++|+||+++|+|||++||+|+++|+++.+++++.+++...+...|..++|+++|++
T Consensus       161 la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~  240 (366)
T PRK08247        161 IAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLL  240 (366)
T ss_pred             HHHHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence            47899999999999999999999999999999999999999999999998876677878888778888889999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +++|+|+..|++++++|+..+++||++||+|.+|+||+                .|||++|++++.+.+.+|++++++|.
T Consensus       241 ~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~----------------~gg~~sf~~~~~~~~~~~~~~l~~~~  304 (366)
T PRK08247        241 IRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG----------------RGGMLSFRLQDEEWVNPFLKSLKLIT  304 (366)
T ss_pred             HhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC----------------cCcEEEEEECCHHHHHHHHHcCCcce
Confidence            99999999999999999999999999999999999995                48999999977788899999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      +++|||+++|++++|++++|+.+++++|...||++++|||||||||++|||+||+|||+++
T Consensus       305 ~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGlE~~~dl~~dl~~al~~~  365 (366)
T PRK08247        305 FAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGIENVEDLIADLKQAFKQV  365 (366)
T ss_pred             EccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999874

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.69  E-value=3.6e-17  Score=151.62  Aligned_cols=105  Identities=21%  Similarity=0.313  Sum_probs=88.9

Q ss_pred             CccccCCEEEEecCC------------CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhH--------HHH
Q 027424            1 MAHAHGALLLVDNSI------------MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL--------AKE   60 (223)
Q Consensus         1 ia~~~g~~lvVDnT~------------~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~--------~~~   60 (223)
                      +||++|++++||+|.            .+|..++|+++|||+|++|.||+++||   ++|+++++++.+        .+.
T Consensus       240 la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp---~~G~i~g~~~~i~~l~~~~l~r~  316 (454)
T TIGR00474       240 LGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP---QAGIIVGKKELIERLKKNPLTRA  316 (454)
T ss_pred             HHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC---eEEEEEECHHHHHhhhhchhHHH
Confidence            489999999999983            235567899999999999999999999   689888776433        222


Q ss_pred             HH-------HHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           61 LY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        61 l~-------~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      ++       .+...+|.+++|+++|+.+++|+|+..|++++++||+++++||++.
T Consensus       317 lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~  371 (454)
T TIGR00474       317 LRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAA  371 (454)
T ss_pred             HhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhh
Confidence            33       4456778889999999999999999999999999999999999875

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK04311 selenocysteine synthase; Provisional

Probab=99.57  E-value=2.3e-15  Score=139.96  Aligned_cols=105  Identities=22%  Similarity=0.273  Sum_probs=85.4

Q ss_pred             CccccCCEEEEec---------CC---CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH-----
Q 027424            1 MAHAHGALLLVDN---------SI---MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----   63 (223)
Q Consensus         1 ia~~~g~~lvVDn---------T~---~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~-----   63 (223)
                      +||++|++++||+         |+   ..|..++|+++|||+|++|.+|+++||   ++|++++++ ++.++++.     
T Consensus       245 lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp---~~G~i~g~~-~li~~l~~~~~~r  320 (464)
T PRK04311        245 LGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP---QAGIIVGKK-ELIARLKKHPLKR  320 (464)
T ss_pred             HHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC---ceEEEEEcH-HHHHHHhhchhHH
Confidence            4899999999999         44   356667899999999999999999999   689887764 45454441     


Q ss_pred             -H----------HHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           64 -L----------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        64 -~----------~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                       +          ...++..++|++++..+++++++..|++++.+||+++++||++|+
T Consensus       321 ~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~  377 (464)
T PRK04311        321 ALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAAL  377 (464)
T ss_pred             HHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhcc
Confidence             1          223455567788888888999999999999999999999999986

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.33  E-value=3.6e-12  Score=116.74  Aligned_cols=100  Identities=25%  Similarity=0.365  Sum_probs=73.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCc-----ccCCCc-------EEEecccccccCCcccceeEEEecChh-H-HHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP-----LELGAD-------IVMHSATKFIAGHSDVMAGVLAVKGER-L-AKELYFLQN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p-----l~~GAD-------ivv~S~tK~l~G~~d~~~G~v~~~~~~-~-~~~l~~~~~   66 (223)
                      +||++|++|+||++||+++.+.+     +.+|||       +|++|+||+++  +.+|+++++.++++ + .+++.....
T Consensus       192 ~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~--altQts~lh~~~~~~v~~~~~~~~l~  269 (417)
T PF01276_consen  192 ICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLP--ALTQTSMLHVKGDRIVDHERVNEALS  269 (417)
T ss_dssp             HHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSS--S-TT-EEEEEETCCCTTHHHHHHHHH
T ss_pred             HhcccCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhccc--ccccceEEEecCCCcccHHHHHHHHH
Confidence            47999999999999999876654     558999       99999999999  88999999999876 4 466777666


Q ss_pred             hcCCCCChHhHHHHHhcHHHHHHHH---------HHHHhHHHHHHHHH
Q 027424           67 AEGSGLAPFDCWICLRGVKTMALRV---------EKQQDNAQKIAEFL  105 (223)
Q Consensus        67 ~~g~~~sp~da~ll~~~l~tl~~R~---------~~~~~na~~la~~L  105 (223)
                      +++ +.||  +|+++.||+.....|         ++..+++..+.+.+
T Consensus       270 ~~~-TTSP--SY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i  314 (417)
T PF01276_consen  270 MHQ-TTSP--SYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKI  314 (417)
T ss_dssp             HHS--SS----HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHc-CCCh--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            766 6799  999999999854333         44556666666666

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.23  E-value=3.1e-10  Score=103.59  Aligned_cols=185  Identities=15%  Similarity=0.173  Sum_probs=112.6

Q ss_pred             CccccCCEEEEecCCCCCCC------------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH--HH
Q 027424            1 MAHAHGALLLVDNSIMSPVL------------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~--~~   66 (223)
                      +|+++|++++|||+++.+..            ..|.. |+||++.|+||+++    .+||+++++ +++.+.++..  ..
T Consensus       163 l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~-~~Div~~slsk~~g----~~gg~v~~~-~~~~~~~~~~~~~~  236 (392)
T PLN03227        163 LKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMV-HAEIVTFSLENAFG----SVGGMTVGS-EEVVDHQRLSGSGY  236 (392)
T ss_pred             HHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCC-CceEEEeechhhhh----ccCcEEecC-HHHHHHHHHhCcCc
Confidence            47899999999999975543            24544 89999999999986    467877544 4554444322  22


Q ss_pred             hcCCCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHh--cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           67 AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLA--SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        67 ~~g~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~--~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      .+|..++|..++.....++..   ..+.++..+++..+.+.|+  .+|.|..|.- ++.-.         ....|.++.|
T Consensus       237 ~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg-~~~~~---------~~~~~~i~~i  306 (392)
T PLN03227        237 CFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRN-RLVIT---------SDPISPIIYL  306 (392)
T ss_pred             cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCcccccccc-ccccC---------CCCCCCEEEE
Confidence            456666787777666666543   3567888889999999887  4555555542 22100         0235789999


Q ss_pred             EeCCHHHH---------HHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC----
Q 027424          142 LTGSLALS---------KHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE----  205 (223)
Q Consensus       142 ~~~~~~~~---------~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE----  205 (223)
                      ++++....         .+|.+.+   .++-.  ..|.. ..+..|                -+++..||+++-..    
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~--~~~~~-~~~~~~----------------~~P~~~iR~~~~~~~t~e  367 (392)
T PLN03227        307 RLSDQEATRRTDETLILDQIAHHSLSEGVAVV--STGGH-VKKFLQ----------------LVPPPCLRVVANASHTRE  367 (392)
T ss_pred             EeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEE--ecccc-cCCcCC----------------CCCCceEEEEecCCCCHH
Confidence            99653221         2444333   23321  11211 111111                13567899999754    


Q ss_pred             CHHHHHHHHHHHHhc
Q 027424          206 DVNDLISDLDKALRT  220 (223)
Q Consensus       206 d~~dL~~dl~~Al~~  220 (223)
                      |.+.+++.|+++++.
T Consensus       368 ei~~~~~~l~~~~~~  382 (392)
T PLN03227        368 DIDKLLTVLGEAVEA  382 (392)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            566677777777654

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.20  E-value=3.8e-10  Score=101.44  Aligned_cols=185  Identities=22%  Similarity=0.218  Sum_probs=125.8

Q ss_pred             CccccCCEEEEecCC-----CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSI-----MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~-----~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      ||++.|++|++|-++     +++.+++|+++ ||||..|+||+|.|+   +||++.++++++.+++...- ..|.--.|.
T Consensus       189 Iad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-AdvVTtTTHKTlrGP---rGG~Il~~~eel~kkin~aV-FPg~qggpl  263 (413)
T COG0112         189 IADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-ADVVTTTTHKTLRGP---RGGIILTNDEELAKKINSAV-FPGLQGGPL  263 (413)
T ss_pred             HHHHhCceEEehHHHHHHHHhcccCCCCCCc-cceEeCCcccCCCCC---CceEEEeccHHHHHHhhhhc-CCccCCChH
Confidence            588999999999995     56778999998 999999999999999   79999998888888776531 223222453


Q ss_pred             hHHHHHhc--HH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC----
Q 027424           76 DCWICLRG--VK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----  144 (223)
Q Consensus        76 da~ll~~~--l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~----  144 (223)
                      ---....+  ++     .+..+.++..+||+.||+.|.++..  +|.- |..  .+|            ++-+++.    
T Consensus       264 ~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~--~vvs-GgT--dnH------------l~lVDl~~~~~  326 (413)
T COG0112         264 MHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGF--KVVS-GGT--DNH------------LVLVDLRSKGL  326 (413)
T ss_pred             HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCC--eEec-CCc--cce------------EEEEEcccCCC
Confidence            22221111  11     1356778999999999999998763  3332 322  222            4444442    


Q ss_pred             CHHHHHHHHhhcCcceeccccCCC-CCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          145 SLALSKHVVETTKYFSITVSFGSV-KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       145 ~~~~~~~f~~~l~l~~~~~s~G~~-~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      +-..+.+.+++.++.-....+... ++    |..++-        .+.| ++.+.|..+|-++.+++.+-+..+|+.
T Consensus       327 ~Gk~ae~~L~~~~It~NKN~iP~D~~~----p~~tSG--------IRiG-tpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         327 TGKKAEAALERAGITVNKNAIPFDPES----PFVTSG--------IRIG-TPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             CHHHHHHHHHHcCEeeccCCCCCCCCC----CCCCcc--------ceec-cHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence            335677788888887665555432 22    222211        2345 677888889988998888888888874

>PRK15029 arginine decarboxylase; Provisional

Probab=99.19  E-value=4.4e-11  Score=116.64  Aligned_cols=104  Identities=12%  Similarity=0.098  Sum_probs=79.7

Q ss_pred             CccccCCEEEEecCCCCCCCc-------Ccc-----c-CCCc-EEEecccccccCCcccceeEEEecCh--hHH-HHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-------RPL-----E-LGAD-IVMHSATKFIAGHSDVMAGVLAVKGE--RLA-KELYF   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-------~pl-----~-~GAD-ivv~S~tK~l~G~~d~~~G~v~~~~~--~~~-~~l~~   63 (223)
                      +||++|++|+||++||+++.+       .++     . .||| +||+|+||+++  +.+|+.+++.+++  .+. +++..
T Consensus       336 ~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~--alTQaS~LHv~~~~~~id~~r~~~  413 (755)
T PRK15029        336 LLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN--ALSQASYIHVREGRGAINFSRFNQ  413 (755)
T ss_pred             HHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhccc--chhhhhhheeCCCccccCHHHHHH
Confidence            379999999999999997532       455     4 7999 99999999999  8899999999775  333 56777


Q ss_pred             HHHhcCCCCChHhHHHHHhcHHHHHHHHH---------HHHhHHHHHHHHHhcCC
Q 027424           64 LQNAEGSGLAPFDCWICLRGVKTMALRVE---------KQQDNAQKIAEFLASHP  109 (223)
Q Consensus        64 ~~~~~g~~~sp~da~ll~~~l~tl~~R~~---------~~~~na~~la~~L~~~p  109 (223)
                      ...+++ +.||  +|+++.||+.....|+         +..+.+..+.+.+++-+
T Consensus       414 ~l~~~q-STSP--SY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~  465 (755)
T PRK15029        414 AYMMHA-TTSP--LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY  465 (755)
T ss_pred             HHHHHc-CCCc--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            777777 6799  9999999998654443         34556666666665543

>PLN02721 threonine aldolase

Probab=99.10  E-value=1.8e-09  Score=95.74  Aligned_cols=173  Identities=17%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             CccccCCEEEEecCCC--C----CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIM--S----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~--s----~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++++|+++.  .    +.....+..++|.++.|+||++++.   .||+++ .++++.+.+.......+..++.
T Consensus       166 l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~-~~~~~~~~~~~~~~~~~~~~~~  241 (353)
T PLN02721        166 LAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAP---VGSVIV-GSKSFIRKAKRLRKTLGGGMRQ  241 (353)
T ss_pred             HHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCc---eeeEEe-cCHHHHHhHHHHHHhcCCCeeh
Confidence            4789999999999853  2    1112223348999999999999875   455454 4556666665555544433322


Q ss_pred             --HhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH--HHHH
Q 027424           75 --FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSK  150 (223)
Q Consensus        75 --~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~--~~~~  150 (223)
                        ..++....++++...++++..+++..+.+.|++.+.+..-.+|     |           .++++.|.+...  ....
T Consensus       242 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~  305 (353)
T PLN02721        242 VGVLAAAALVALQENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAA-----V-----------ETNIVYFDITDGSRITAE  305 (353)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEecCC-----c-----------cceEEEEEccCCccccHH
Confidence              2344445567776677877788899999999988776320222     1           256788877321  1234


Q ss_pred             HHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhc
Q 027424          151 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  220 (223)
Q Consensus       151 ~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al~~  220 (223)
                      .|.+.|.--.+.+.          |.                 .++.||++++    -||.+.+++.|++++++
T Consensus       306 ~~~~~L~~~gi~v~----------~~-----------------~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        306 KLCKSLEEHGVLLM----------PG-----------------NSSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             HHHHHHHhCCcEEe----------cC-----------------CCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence            45444431111111          11                 2357999997    34567788888777764

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.09  E-value=2.1e-10  Score=111.19  Aligned_cols=104  Identities=16%  Similarity=0.122  Sum_probs=79.7

Q ss_pred             ccccCCEEEEecCCCCCCCcCc---------ccCCCc----EEEecccccccCCcccceeEEEecChhH--------HHH
Q 027424            2 AHAHGALLLVDNSIMSPVLSRP---------LELGAD----IVMHSATKFIAGHSDVMAGVLAVKGERL--------AKE   60 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~p---------l~~GAD----ivv~S~tK~l~G~~d~~~G~v~~~~~~~--------~~~   60 (223)
                      +|.++ +|+||++|++++.+.|         +++|||    +|++|+||+++  +.+|+.+++.+++.+        .++
T Consensus       308 ~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~--alTQaS~LHvk~~~i~g~~~~v~~~r  384 (720)
T PRK13578        308 GHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA--GFSQTSQIHKKDNHIKGQARYCPHKR  384 (720)
T ss_pred             hccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcch--hhhhHhhhhcCCcccccccccCCHHH
Confidence            67788 9999999999876666         578999    99999999999  778999999977543        256


Q ss_pred             HHHHHHhcCCCCChHhHHHHHhcHHHHHHHH---------HHHHhHHHHHHHHH-hcCCCe
Q 027424           61 LYFLQNAEGSGLAPFDCWICLRGVKTMALRV---------EKQQDNAQKIAEFL-ASHPRV  111 (223)
Q Consensus        61 l~~~~~~~g~~~sp~da~ll~~~l~tl~~R~---------~~~~~na~~la~~L-~~~p~v  111 (223)
                      +.....+++ +.||  +|+++.||+.....|         ++..+.+..+.+.+ +..+.+
T Consensus       385 ~~~al~m~q-STSP--sY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~  442 (720)
T PRK13578        385 LNNAFMLHA-STSP--FYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLI  442 (720)
T ss_pred             HHHHHHHHc-CCCh--HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            666666666 6799  999999999854333         44566666666666 555544

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.09  E-value=6.1e-09  Score=95.80  Aligned_cols=103  Identities=23%  Similarity=0.274  Sum_probs=70.3

Q ss_pred             CccccCCEEEEecCCC-----CCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC---CCC
Q 027424            1 MAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG---SGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~-----s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g---~~~   72 (223)
                      +||++|++|+||+|++     .+..+.|+. ++|+++.|++|+++|+.   ||+++++++.+.+.++.. ...|   ...
T Consensus       191 la~~~g~~livD~Aha~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~~~~-~~~~~~~~~~  265 (416)
T PRK13034        191 IADEVGALLMVDMAHIAGLVAAGEHPNPFP-HAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKINSA-VFPGLQGGPL  265 (416)
T ss_pred             HHHHcCCEEEEeCcccccCcccCCCCCCCC-CceEEEEeCcccCCCCC---CeEEEECcHHHHHHHHhh-cCCcccCCcc
Confidence            4789999999999954     444456665 69999999999998874   888877776665554432 1222   123


Q ss_pred             ChHhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~  108 (223)
                      .|..+.+....++.+    ..+.++..+|+..+++.|++.
T Consensus       266 ~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~  305 (416)
T PRK13034        266 MHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER  305 (416)
T ss_pred             HHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc
Confidence            334444433333333    234688899999999999876

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.09  E-value=3.4e-09  Score=95.33  Aligned_cols=167  Identities=17%  Similarity=0.255  Sum_probs=103.6

Q ss_pred             ccccCCEEEEecCCCCCC----CcC-cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHh
Q 027424            2 AHAHGALLLVDNSIMSPV----LSR-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD   76 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~----~~~-pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~d   76 (223)
                      |+++|++|+||++++.++    ... ...+|+|+++.|++|.++|.   .+|+++++ +++.+.+......++.+++|..
T Consensus       164 a~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~---r~G~v~~~-~~li~~l~~~~~~~~~s~~~~~  239 (346)
T TIGR03576       164 AKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGP---RGGLLAGR-KELVDKIKSVGEQFGLEAQAPL  239 (346)
T ss_pred             HHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhcccc---ceEEEEeC-HHHHHHHHHhhcCcccCccHHH
Confidence            678999999999998753    222 24568899999999998776   47888765 5677777766655555567767


Q ss_pred             HHHHHhcHHHHH-HHH-HHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC---CHHHHHH
Q 027424           77 CWICLRGVKTMA-LRV-EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---SLALSKH  151 (223)
Q Consensus        77 a~ll~~~l~tl~-~R~-~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~---~~~~~~~  151 (223)
                      .+....+|+.+. .++ +...++...+.+.+++   + .| +|.                .++.+-+.+.   +.+.+.+
T Consensus       240 ~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~---~-~~-~~~----------------~~~f~~~~~~~~~~~~~~~~  298 (346)
T TIGR03576       240 LAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK---L-NV-ERT----------------PTGFVIKGVEEEKLIEIGLD  298 (346)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh---C-CC-CcC----------------CCeEEEEeCCCCCHHHHHHH
Confidence            777888887642 222 3334444444445542   2 22 231                2334444453   2355666


Q ss_pred             HHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC-----HHHHHHHHHHHH
Q 027424          152 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-----VNDLISDLDKAL  218 (223)
Q Consensus       152 f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd-----~~dL~~dl~~Al  218 (223)
                      +++.-++.-.             |.+  .+         .+ .++.+|||+|.++     .+-+++-|++.|
T Consensus       299 ll~~~gV~v~-------------~~~--~f---------~~-~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       299 LLRNYGIITI-------------TAV--GM---------PG-ASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             HHHhCCEEEe-------------CCc--cc---------CC-CCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence            6666555421             111  00         01 2568999999887     677888777665

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.04  E-value=6.8e-09  Score=90.90  Aligned_cols=110  Identities=19%  Similarity=0.140  Sum_probs=75.4

Q ss_pred             CccccCCEEEEecCCCCCCC--------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL--------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~--------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +||++|++++||++++....        ..+...+.|+++.|++|+++.. ....|+++++++++.+.++......+...
T Consensus       160 ~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~-g~~~G~i~~~~~~~~~~~~~~~~~~~~~~  238 (350)
T cd00609         160 LAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLP-GLRIGYLIAPPEELLERLKKLLPYTTSGP  238 (350)
T ss_pred             HHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCc-ccceEEEecCHHHHHHHHHHHHHhcccCC
Confidence            47899999999999865321        2344567899999999999722 24567787766567676666555443445


Q ss_pred             ChHhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           73 APFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        73 sp~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ++...+.+...++..    ....++..+++..+.+.|++++..
T Consensus       239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  281 (350)
T cd00609         239 STLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPL  281 (350)
T ss_pred             ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            555555555555543    333466788889999999988753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02271 serine hydroxymethyltransferase

Probab=99.01  E-value=3.8e-09  Score=99.75  Aligned_cols=188  Identities=18%  Similarity=0.166  Sum_probs=119.8

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCcccCCCcEEEecccccccCCcccceeEEEecCh-------------------h
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-------------------R   56 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~-------------------~   56 (223)
                      ||+++|++++||.++.+++     .++|+. +||+|+.|+||++.|+   .||++.++++                   +
T Consensus       321 IAdevGA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt~TTHKtLrGP---rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d  396 (586)
T PLN02271        321 IADKCGAVLMCDMAHISGLVAAKECVNPFD-YCDIVTSTTHKSLRGP---RGGIIFYRKGPKLRKQGMLLSHGDDNSHYD  396 (586)
T ss_pred             HHHHcCCEEEEECcccccccccCcCCCCCc-CCcEEEeCCcccCCCC---CceEEEecccccccccCCccccccccccHH
Confidence            5889999999999986654     357887 6999999999999999   5788877653                   1


Q ss_pred             HHHHHHHHHHhcCCCCChHhHH--HHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHH
Q 027424           57 LAKELYFLQNAEGSGLAPFDCW--ICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  129 (223)
Q Consensus        57 ~~~~l~~~~~~~g~~~sp~da~--ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~  129 (223)
                      +.+++.... ..|..-+|...-  -+..+++     .+....++..+||++||+.|.++..  +|.. |-  +..|.++.
T Consensus       397 ~~~kI~~aV-fPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~--~vv~-gg--TdnHlvLv  470 (586)
T PLN02271        397 FEEKINFAV-FPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKC--RLVT-GG--TDNHLLLW  470 (586)
T ss_pred             HHHHhhccc-CCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCC--eEee-CC--CCcceeee
Confidence            223332211 112222332221  2233344     2466789999999999999988753  3443 22  34455443


Q ss_pred             hhhCCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHH
Q 027424          130 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  209 (223)
Q Consensus       130 ~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~d  209 (223)
                      .. +..|      + +-..+++.++..++......+.+.++-....            -.+.| ++.+.|...+-+|.+.
T Consensus       471 Dl-~~~g------~-~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~ps------------GiRiG-T~alT~rG~~e~d~~~  529 (586)
T PLN02271        471 DL-TTLG------L-TGKNYEKVCEMCHITLNKTAIFGDNGTISPG------------GVRIG-TPAMTSRGCLESDFET  529 (586)
T ss_pred             cC-cccC------C-CHHHHHHHHHHcCeEeccccCCCCCCCCCCC------------ccccc-CHHHHhcCCCcHHHHH
Confidence            32 2122      1 3356788899988887666666543322111            02344 6667777788888888


Q ss_pred             HHHHHHHHHh
Q 027424          210 LISDLDKALR  219 (223)
Q Consensus       210 L~~dl~~Al~  219 (223)
                      +.+-+.++++
T Consensus       530 iA~~i~~~~~  539 (586)
T PLN02271        530 IADFLLRAAQ  539 (586)
T ss_pred             HHHHHHHHHh
Confidence            8888888876

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.01  E-value=6.8e-09  Score=92.01  Aligned_cols=196  Identities=17%  Similarity=0.186  Sum_probs=118.0

Q ss_pred             CccccCCEEEEecCCCCCCCc--CcccCCCcEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~--~pl~~GADivv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|+++|+|++.+.+...  +++...+|+++.|++  |++++.   .||+++.+++++.++++.....         
T Consensus       128 l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (352)
T cd00616         128 IAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTG---EGGAVVTNDEELAERARLLRNHGRDRDRFKY  204 (352)
T ss_pred             HHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCccc---CceEEEECCHHHHHHHHHHHHcCCCCCCCcc
Confidence            478999999999997654322  223334799999966  999643   3787877776776666544321         


Q ss_pred             ------cCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           68 ------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        68 ------~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                            ....+++..+.+.+..++.+..+.++..+|++.+.+.|++.|+++ +..|.  ..         ......+++|
T Consensus       205 ~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~-~~~~~--~~---------~~~~~~~~~~  272 (352)
T cd00616         205 EHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERYKELLADLPGIR-LPDVP--PG---------VKHSYHLYVI  272 (352)
T ss_pred             ccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCcc-CCCCC--CC---------CceeeEEEEE
Confidence                  122367778888888888888888999999999999999988763 33331  10         0113568888


Q ss_pred             EeC-----CHHHHHHHHhhcCcceeccccCCCCCCCCCCcccc----C-CCCCHHHHHhcCCCCCeEEEEecCCCHHHHH
Q 027424          142 LTG-----SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS----H-ASIPVEVRQARGLTEDLVRISVGIEDVNDLI  211 (223)
Q Consensus       142 ~~~-----~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~----h-~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~  211 (223)
                      .+.     +.+...+.+..-++. .+..+-   .++..+....    + ..++...    -+..+.||+|++.-..++=+
T Consensus       273 ~~~~~~~~~~~~v~~~L~~~gI~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~----~~~~~~l~l~~~~~~t~~di  344 (352)
T cd00616         273 RLDPEAGESRDELIEALKEAGIE-TRVHYP---PLHHQPPYKKLLGYPPGDLPNAE----DLAERVLSLPLHPSLTEEEI  344 (352)
T ss_pred             EECCcCCCCHHHHHHHHHHCCCC-eeeecC---ccccCHhhhhccCCCcCCChHHH----HHHhCeEEccCCCCCCHHHH
Confidence            874     234444445444442 221111   0000000000    0 0111111    12357899999987766666


Q ss_pred             HHHHHHHh
Q 027424          212 SDLDKALR  219 (223)
Q Consensus       212 ~dl~~Al~  219 (223)
                      +.+.++|+
T Consensus       345 ~~i~~~l~  352 (352)
T cd00616         345 DRVIEALR  352 (352)
T ss_pred             HHHHHHhC
Confidence            66666653

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=98.99  E-value=9.1e-09  Score=96.33  Aligned_cols=187  Identities=17%  Similarity=0.167  Sum_probs=115.7

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCCCcEEEecccccccCCcccceeEEEecChh-------------HHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-------------LAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~-------------~~~~l~   62 (223)
                      +||++|++++||.+++.++.     ..|++ ++|+++.|++|++.|+   .||++.++++.             +.+.+.
T Consensus       206 ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~-~~Div~~t~hK~L~GP---~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~  281 (475)
T PLN03226        206 IADKVGALLMCDMAHISGLVAAQEAASPFE-YCDVVTTTTHKSLRGP---RGGMIFFRKGPKPPKGQGEGAVYDYEDKIN  281 (475)
T ss_pred             HHHHcCCEEEEEchhhhCcccCCCCCCCCC-CCeEEEecCcccccCC---CceEEEEchhhcccccCCCccHHHHHHHhc
Confidence            58999999999999876653     35666 7999999999999887   47878776531             111111


Q ss_pred             HHH-HhcCCCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCC
Q 027424           63 FLQ-NAEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  136 (223)
Q Consensus        63 ~~~-~~~g~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g  136 (223)
                      ... ..++.+++|...+-+..+++-+     ..+.++..+|+..+++.|++. ++ +|..++-++             .=
T Consensus       282 ~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~-G~-~l~~~~t~~-------------hi  346 (475)
T PLN03226        282 FAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK-GY-KLVTGGTDN-------------HL  346 (475)
T ss_pred             cccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-CC-EEEcCCCCC-------------CE
Confidence            110 1123345566666677777765     345788999999999999884 43 555443211             11


Q ss_pred             eeEEEEe-C-CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHH
Q 027424          137 SVLSFLT-G-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  214 (223)
Q Consensus       137 gl~sf~~-~-~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl  214 (223)
                      .+++|.. + +...+.+.++..++......+.+..+-+..|.            -+.| ++.+.|..++.||.+.+.+-|
T Consensus       347 ~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~g------------iRiG-t~~lt~~g~~~~d~~~ia~~i  413 (475)
T PLN03226        347 VLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGG------------VRIG-TPAMTSRGLVEKDFEKVAEFL  413 (475)
T ss_pred             EEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCC------------cccC-cHHHHHCCCCHHHHHHHHHHH
Confidence            2333321 2 44557777887777644333333222221111            1223 444566677778888888888


Q ss_pred             HHHHh
Q 027424          215 DKALR  219 (223)
Q Consensus       215 ~~Al~  219 (223)
                      .++|+
T Consensus       414 ~~~~~  418 (475)
T PLN03226        414 HRAVT  418 (475)
T ss_pred             HHHHH
Confidence            88887

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.98  E-value=2.1e-08  Score=91.70  Aligned_cols=146  Identities=21%  Similarity=0.198  Sum_probs=90.8

Q ss_pred             CccccCCEEEEecCC-----CCCCCcCcccCCCcEEEecccccccCCcccceeEEEec-------------ChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSI-----MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK-------------GERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~-----~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~-------------~~~~~~~l~   62 (223)
                      ||++.|+.|++|-++     ++...++|+++ ||||..|+||+|.|+   +||+|.+|             ++++.+++.
T Consensus       192 Iad~vga~l~~D~sH~~GLIa~g~~~~P~~~-ADvvt~sThKtl~GP---rggiI~~~~~~~~~~~~~~~~~~~l~~~I~  267 (399)
T PF00464_consen  192 IADEVGAYLMADISHIAGLIAGGLFPNPFPY-ADVVTGSTHKTLRGP---RGGIILTNKGSKNVDKKGKEIDEELAEKID  267 (399)
T ss_dssp             HHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SSEEEEESSGGG-SS---S-EEEEES-SEEEE-TTS-EEEHHHHHHHH
T ss_pred             HHHhcCcEEEecccccccceehheecCcccc-ceEEEeecccccccc---CceEEEEcCCccccCCcccccHHHHHHHhc
Confidence            578999999999996     45678999996 999999999999999   79999988             456777776


Q ss_pred             HHHHhcCCCCChHhHH--HHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCC
Q 027424           63 FLQNAEGSGLAPFDCW--ICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  135 (223)
Q Consensus        63 ~~~~~~g~~~sp~da~--ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~  135 (223)
                      ... ..|..-+|....  -+.-+++     .+....++..+||+.||+.|++...  +|.. |.  +..|          
T Consensus       268 ~av-fP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~--~v~~-gg--Td~H----------  331 (399)
T PF00464_consen  268 SAV-FPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGF--KVVT-GG--TDNH----------  331 (399)
T ss_dssp             HHH-TTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT---EEGG-GS---SSS----------
T ss_pred             ccc-CCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCc--EEEE-CC--CCCC----------
Confidence            532 223222342211  1222222     2467789999999999999999864  5554 21  2223          


Q ss_pred             CeeEEEEe---C-CHHHHHHHHhhcCcceeccccCCC
Q 027424          136 GSVLSFLT---G-SLALSKHVVETTKYFSITVSFGSV  168 (223)
Q Consensus       136 ggl~sf~~---~-~~~~~~~f~~~l~l~~~~~s~G~~  168 (223)
                        ++-+++   + +-..+.++++..+++.....+.+.
T Consensus       332 --~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d  366 (399)
T PF00464_consen  332 --QVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGD  366 (399)
T ss_dssp             --EEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTT
T ss_pred             --eEEEEecccccchHHHHHHHHhcCeeecccccCCC
Confidence              444444   1 335678889999988665555443

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=98.97  E-value=2.1e-08  Score=93.08  Aligned_cols=179  Identities=16%  Similarity=0.168  Sum_probs=109.6

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-----HhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-----NAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-----~~~g~   70 (223)
                      +||++|++++||.+++.+..     ..|+. |+|+++.|+||++.|+.   ||.+.++++ +.+.+....     ..+..
T Consensus       205 i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-~~D~l~~S~hK~l~GP~---Gg~l~~~~~-~~~~l~~~~~~~~~p~~~G  279 (452)
T PTZ00094        205 ICDSVGAYLMADIAHTSGLVAAGVLPSPFP-YADVVTTTTHKSLRGPR---SGLIFYRKK-VKPDIENKINEAVFPGLQG  279 (452)
T ss_pred             HHHHcCCEEEEeccchhccccCCCCCCCCC-CCcEEEcCCccCCCCCC---ceEEEEecc-cchHHHHhhccccCCCCCC
Confidence            47899999999999877654     45665 89999999999999874   677767653 222221110     01111


Q ss_pred             CCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-
Q 027424           71 GLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-  144 (223)
Q Consensus        71 ~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-  144 (223)
                      +.++...+-+..+++-+     ..+.++..+++..+++.|++. ++ +|..|+-.   .|          -.+++|... 
T Consensus       280 ~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~-~v~~~~~~---~~----------~~~v~~~~~~  344 (452)
T PTZ00094        280 GPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GY-DLVTGGTD---NH----------LVLVDLRPFG  344 (452)
T ss_pred             CchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-Cc-EEecCCCC---Cc----------eEeecCCcCC
Confidence            34444455566666665     234577788999999999774 33 55555311   11          245555442 


Q ss_pred             -CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe--------cCCCHHHHHHHHH
Q 027424          145 -SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--------GIEDVNDLISDLD  215 (223)
Q Consensus       145 -~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv--------GlEd~~dL~~dl~  215 (223)
                       +.+.+.+.++..+++.   +.    ..  .|+.            .....++.||+|.        +-||++.|.+-|.
T Consensus       345 ~~~~~~~~~L~~~gI~v---s~----~~--~p~~------------~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~  403 (452)
T PTZ00094        345 ITGSKMEKLLDAVNISV---NK----NT--IPGD------------KSALNPSGVRLGTPALTTRGAKEKDFKFVADFLD  403 (452)
T ss_pred             CCHHHHHHHHHHCCcEE---ec----cc--CCCC------------CcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHH
Confidence             3455666666666552   21    10  1111            0011356899998        4688999999999


Q ss_pred             HHHhc
Q 027424          216 KALRT  220 (223)
Q Consensus       216 ~Al~~  220 (223)
                      +++..
T Consensus       404 ~~~~~  408 (452)
T PTZ00094        404 RAVKL  408 (452)
T ss_pred             HHHHH
Confidence            88863

>PRK07179 hypothetical protein; Provisional

Probab=98.96  E-value=2.1e-08  Score=91.48  Aligned_cols=174  Identities=20%  Similarity=0.263  Sum_probs=105.3

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCc--ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--HhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~p--l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--~~~g   69 (223)
                      +|+++|++++||++++-...       +..  +..++|+++.|++|.++|.    +|+++++ +++.+.+....  ...+
T Consensus       206 l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~----~G~l~~~-~~~~~~~~~~~~~~~~~  280 (407)
T PRK07179        206 IAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGR----AGIITCP-RELAEYVPFVSYPAIFS  280 (407)
T ss_pred             HHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhcc----CeEEEeC-HHHHHHHHHhCcCeeeC
Confidence            47899999999999853221       112  2235799999999999864    6777665 45555443322  1244


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      .+..|..+..+...++.+   ..+.++..++...+.+.|++. ++ .|+                  +.|.++.|+++..
T Consensus       281 ~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~-~v~------------------~~~~i~~l~~~~~  340 (407)
T PRK07179        281 STLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL-GY-NIR------------------SESQIIALETGSE  340 (407)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CC-CCC------------------CCCCEEEEEeCCH
Confidence            555665555444555543   356678888888888888765 22 111                  2467888888543


Q ss_pred             HHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 027424          147 ALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  219 (223)
Q Consensus       147 ~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~  219 (223)
                      .....+.+.|   +++      +   +.++.|..              .-.++.||||++.    ||.+.+++-|+++++
T Consensus       341 ~~~~~~~~~L~~~GI~------~---~~~~~p~~--------------~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~  397 (407)
T PRK07179        341 RNTEVLRDALEERNVF------G---AVFCAPAT--------------PKNRNLIRLSLNADLTASDLDRVLEVCREARD  397 (407)
T ss_pred             HHHHHHHHHHHHCCce------E---eeecCCCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            3334443333   333      1   11122211              0125789999997    677888888888777


Q ss_pred             cCC
Q 027424          220 TGP  222 (223)
Q Consensus       220 ~~~  222 (223)
                      ...
T Consensus       398 ~~~  400 (407)
T PRK07179        398 EVD  400 (407)
T ss_pred             hhC
Confidence            543

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=98.91  E-value=5.2e-08  Score=88.36  Aligned_cols=187  Identities=20%  Similarity=0.202  Sum_probs=103.0

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH---------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---------------   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~---------------   64 (223)
                      +||++|++++||.+++.+.. .+.-++|+|+++.|++|+++..+   .|++..++ ++.+.+...               
T Consensus       184 ~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~g~l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~  259 (403)
T TIGR01979       184 LAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTG---IGVLYGKE-ELLEQMPPFLGGGEMIAEVSFEET  259 (403)
T ss_pred             HHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCC---ceEEEEch-HHHhcCCCeecCCCceeecccCcc
Confidence            47899999999999876543 34445799999999999886443   56676654 343333210               


Q ss_pred             ------HHhcCCCCChHhHHHHHhcHHHHH-----HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           65 ------QNAEGSGLAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        65 ------~~~~g~~~sp~da~ll~~~l~tl~-----~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                            .+....+.+....+-+..+++-+.     ...++..+.+..+.+.|++.|.+ ++..|.-   +         .
T Consensus       260 ~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~-~~~~~~~---~---------~  326 (403)
T TIGR01979       260 TYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGL-RIYGPRD---A---------E  326 (403)
T ss_pred             ccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCCC---c---------c
Confidence                  000011222222333444544432     22355566667777778777775 5654521   1         0


Q ss_pred             CCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHH
Q 027424          134 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVND  209 (223)
Q Consensus       134 g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~d  209 (223)
                      ..+++++|.+.+.. ...+.+.|+-..+.++-|..-+   .|           ....+| .++.+|+|+|.    ||++.
T Consensus       327 ~~~~~v~~~~~~~~-~~~~~~~L~~~gI~v~~g~~~~---~~-----------~~~~~~-~~~~iRiS~~~~~t~~di~~  390 (403)
T TIGR01979       327 DRGGIISFNVEGVH-PHDVGTILDEEGIAVRSGHHCA---QP-----------LMRRFG-VPATCRASFYIYNTEEDIDA  390 (403)
T ss_pred             ccCceEEEEeCCcC-HHHHHHHHhhCCEEEcchhhhh---HH-----------HHHHhC-CCCEEEEEeccCCCHHHHHH
Confidence            13689999874321 2233333333222233332100   01           112234 34789999996    57777


Q ss_pred             HHHHHHHHHhc
Q 027424          210 LISDLDKALRT  220 (223)
Q Consensus       210 L~~dl~~Al~~  220 (223)
                      |++-|++.++.
T Consensus       391 l~~~l~~~~~~  401 (403)
T TIGR01979       391 LVEALKKVRKF  401 (403)
T ss_pred             HHHHHHHHHHH
Confidence            77777766543

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=98.91  E-value=4.3e-08  Score=87.92  Aligned_cols=111  Identities=22%  Similarity=0.226  Sum_probs=76.1

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--------hcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--------AEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--------~~g~~   71 (223)
                      +||++|++++||++++.+.. +.+.++|+|+++.|+||+++++.  .+|+++++ +++.+++.....        ..|.+
T Consensus       164 ~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~--~~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~  240 (361)
T cd06452         164 VCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASA--PIGVLATT-EEWADIVFRTSQMFKIKEVELLGCT  240 (361)
T ss_pred             HHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCC--CeEEEEEC-HHHHHHHhccccccccceeeeeccc
Confidence            47889999999999976542 55667899999999999998553  46777665 456565543221        22333


Q ss_pred             CChHhHHHHHhcHHHHHHH---HHHHHhHHHHHHHHHhcCCCeeEEE
Q 027424           72 LAPFDCWICLRGVKTMALR---VEKQQDNAQKIAEFLASHPRVKKVN  115 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~R---~~~~~~na~~la~~L~~~p~v~~V~  115 (223)
                      ..+..++.++.+++.+..+   .++..++++.+++.|++.|++ +|+
T Consensus       241 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~-~v~  286 (361)
T cd06452         241 LRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIEGI-KQL  286 (361)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-EEE
Confidence            3233466677777765433   455567788999999999876 443

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=98.89  E-value=1.3e-07  Score=85.77  Aligned_cols=180  Identities=20%  Similarity=0.233  Sum_probs=102.9

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc-CCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-GSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~-g~~~sp   74 (223)
                      +||++|+++++|+++..++     ...++. ++|+++.|++|+++|+   .+|+++++++++.+++....... ..+..+
T Consensus       184 l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK~l~G~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~  259 (402)
T cd00378         184 IADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHKTLRGP---RGGLILTRKGELAKKINSAVFPGLQGGPHL  259 (402)
T ss_pred             HHHhcCCEEEEEccchhhhhhcccCCCccc-CCcEEEeccccCCCCC---CceEEEeccHHHHHHHHHHhCccccCCchH
Confidence            4789999999999964432     234566 8999999999999875   36767777656766665433211 111111


Q ss_pred             HhHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC----C
Q 027424           75 FDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----S  145 (223)
Q Consensus        75 ~da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~----~  145 (223)
                      .....+..++.     .+..++++..+++..+.+.|+++ ++.-+..|                ..+..+.+.+.    +
T Consensus       260 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----------------~~~~~v~v~~~~~~~~  322 (402)
T cd00378         260 HVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGG----------------TDNHLVLVDLRPKGIT  322 (402)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecC----------------CCCeEEEEeCCccCCC
Confidence            11111122222     33556788899999999999987 34222122                12555666663    2


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC--------CCHHHHHHHHHHH
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------EDVNDLISDLDKA  217 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl--------Ed~~dL~~dl~~A  217 (223)
                      .+...+.+..-++.-..   +      ..|...- .          ...+..+|++...        ||.+.+++-|.+.
T Consensus       323 ~~~~~~~l~~~gI~v~~---~------~~p~~~~-~----------~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~  382 (402)
T cd00378         323 GKAAEDALEEAGITVNK---N------TLPWDPS-S----------PFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARA  382 (402)
T ss_pred             HHHHHHHHHHcCcEEcC---C------cCCCCCC-C----------CCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHH
Confidence            23344444444433111   0      0121100 0          0123568997744        6788888888887


Q ss_pred             HhcC
Q 027424          218 LRTG  221 (223)
Q Consensus       218 l~~~  221 (223)
                      +...
T Consensus       383 ~~~~  386 (402)
T cd00378         383 LKDA  386 (402)
T ss_pred             Hhcc
Confidence            7643

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=98.89  E-value=4.9e-08  Score=91.34  Aligned_cols=178  Identities=17%  Similarity=0.179  Sum_probs=114.4

Q ss_pred             CccccCCEEEEecCCCCCCCc--------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-HhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~--------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~~~g~~   71 (223)
                      +||++|++++||.+++.++.-        +|+. ++|+++.|++|++.|+   .||++.+++ ++.+.+.... ..+|..
T Consensus       243 ia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~-~~D~vtgT~hKaL~GP---~GG~I~~~~-~l~~~L~~a~P~i~gg~  317 (493)
T PRK13580        243 IADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVP-HADIVTTTTHKTLRGP---RGGLVLAKK-EYADAVDKGCPLVLGGP  317 (493)
T ss_pred             HHHHcCCEEEEECchhhceeccccchhhcCCCC-CCcEEEeCChhhccCC---CeEEEEecH-HHHHHHhhCCCcccCCC
Confidence            588999999999998776531        5654 8999999999999876   488887764 5555553222 345666


Q ss_pred             CChHhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHH
Q 027424           72 LAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  147 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~  147 (223)
                      +.|.-+.....-.+..    ..+.++..+|+..+++.|++...  .|.-.+               .-..++.+.+++..
T Consensus       318 l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~--~vv~gg---------------TdshIV~V~lg~~~  380 (493)
T PRK13580        318 LPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGA--RLVTGG---------------TDNHLVLIDVTSFG  380 (493)
T ss_pred             ccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCC--CccCCC---------------CCCCEEEEEeCCHH
Confidence            7775554444322222    34779999999999999988652  221111               13478888886432


Q ss_pred             ----HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec--------CCCHHHHHHHHH
Q 027424          148 ----LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLD  215 (223)
Q Consensus       148 ----~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG--------lEd~~dL~~dl~  215 (223)
                          .+.+.+...+++..+..         .|+...-           ...+.-|||++-        .||.+.+.+-|.
T Consensus       381 ~~g~~a~~~L~e~GI~vn~i~---------~Ptvp~g-----------~~~~srLRIg~~A~ttrg~teedi~~iad~l~  440 (493)
T PRK13580        381 LTGRQAESALLDAGIVTNRNS---------IPSDPNG-----------AWYTSGIRLGTPALTTLGMGSDEMDEVAELIV  440 (493)
T ss_pred             HHHHHHHHHHHHCCeEEcccc---------CCCCCCC-----------CCCCceEEeccchhhhcCCCHHHHHHHHHHHH
Confidence                34555666677643322         3332100           012344777744        478999999999


Q ss_pred             HHHhc
Q 027424          216 KALRT  220 (223)
Q Consensus       216 ~Al~~  220 (223)
                      ++++.
T Consensus       441 ~~l~~  445 (493)
T PRK13580        441 KVLSN  445 (493)
T ss_pred             HHHHh
Confidence            88864

>PRK05957 aspartate aminotransferase; Provisional

Probab=98.87  E-value=6.1e-08  Score=88.00  Aligned_cols=109  Identities=12%  Similarity=0.044  Sum_probs=71.0

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|++||+|++++--.+     ..+..+    .--|++.|+||.++.+|..+|+++ + ++++.+++.......+..
T Consensus       188 ~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~-~-~~~~~~~~~~~~~~~~~~  265 (389)
T PRK05957        188 ICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMV-I-PIHLLEAIKKIQDTILIC  265 (389)
T ss_pred             HHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEe-c-CHHHHHHHHHHHhhcccC
Confidence            47899999999999752111     111111    123889999999988888877655 4 456777777666555444


Q ss_pred             CChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           72 LAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        72 ~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      .+....+.+...++.    +....++..++...+.+.|++.+.+
T Consensus       266 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  309 (389)
T PRK05957        266 PPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDR  309 (389)
T ss_pred             CCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            554445555555543    3444466677888888999887654

>PRK05764 aspartate aminotransferase; Provisional

Probab=98.86  E-value=2e-07  Score=84.30  Aligned_cols=109  Identities=16%  Similarity=0.110  Sum_probs=72.5

Q ss_pred             CccccCCEEEEecCCCCCCCcC----c---c---cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----P---L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----p---l---~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|+++|+++++|++++...+..    +   +   ..+-+|++.|+||.++.+|..+| +++. ++++.+++.......+.
T Consensus       192 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG-~i~~-~~~~~~~~~~~~~~~~~  269 (393)
T PRK05764        192 VAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLG-YAAG-PKELIKAMSKLQSHSTS  269 (393)
T ss_pred             HHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeE-EEec-CHHHHHHHHHHHhhccc
Confidence            3789999999999986432110    1   1   12467999999999987776664 4544 45677777666554554


Q ss_pred             CCChHhHHHHHhcHH---H-HHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           71 GLAPFDCWICLRGVK---T-MALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        71 ~~sp~da~ll~~~l~---t-l~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      .+++...+.+.+.++   . +....++..++...+.+.|+++|.+
T Consensus       270 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  314 (393)
T PRK05764        270 NPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGL  314 (393)
T ss_pred             CCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            567766666666664   2 2233455567778888999988654

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=98.86  E-value=9.7e-08  Score=86.72  Aligned_cols=181  Identities=19%  Similarity=0.156  Sum_probs=101.3

Q ss_pred             CccccCCEEEEecCCCCC-CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--------------
Q 027424            1 MAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--------------   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--------------   65 (223)
                      +||++|++++||++.+-+ +..+.-++++|+++.|++|.++..|   .|++..++ ++.+++..+.              
T Consensus       185 l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  260 (401)
T PRK10874        185 LAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTG---IGVLYGKS-ELLEAMSPWQGGGKMLTEVSFDGF  260 (401)
T ss_pred             HHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCc---cEEEEEch-HHHhcCCCeecCCcceEeeccCcc
Confidence            478999999999998633 2233345689999999999775444   36776665 4444332110              


Q ss_pred             -------HhcCCCCChHhHHHHHhcHHHHH----HH-HHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           66 -------NAEGSGLAPFDCWICLRGVKTMA----LR-VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        66 -------~~~g~~~sp~da~ll~~~l~tl~----~R-~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                             +....+.+......+..+++.+.    .+ .++..+.+..+.+.|+++|.+. +..|     |          
T Consensus       261 ~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~-~~~~-----~----------  324 (401)
T PRK10874        261 TPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFR-SFRC-----Q----------  324 (401)
T ss_pred             CCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCC-----C----------
Confidence                   00001222223344555665542    12 2444556777888888888764 3322     1          


Q ss_pred             CCCeeEEEEeCC--HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCH
Q 027424          134 GAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDV  207 (223)
Q Consensus       134 g~ggl~sf~~~~--~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~  207 (223)
                       .+++++|.+.+  .+...++++.-++.   ++-|..      +.        ....+..|. .+.||+|+|.    ||+
T Consensus       325 -~~~i~~~~~~~~~~~~~~~~L~~~gI~---v~~g~~------~~--------~~~~~~~g~-~~~iRiS~~~~nt~edi  385 (401)
T PRK10874        325 -DSSLLAFDFAGVHHSDLVTLLAEYGIA---LRAGQH------CA--------QPLLAALGV-TGTLRASFAPYNTQSDV  385 (401)
T ss_pred             -CCcEEEEEECCcCHHHHHHHHHHCCcE---Eecccc------ch--------HHHHHHhCC-CCEEEEEecccCCHHHH
Confidence             24688888743  23343444443332   222211      00        011123453 4789999994    567


Q ss_pred             HHHHHHHHHHHhc
Q 027424          208 NDLISDLDKALRT  220 (223)
Q Consensus       208 ~dL~~dl~~Al~~  220 (223)
                      +.+++.|++.++.
T Consensus       386 d~ll~al~~~~~~  398 (401)
T PRK10874        386 DALVNAVDRALEL  398 (401)
T ss_pred             HHHHHHHHHHHHH
Confidence            7788777777664

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=98.86  E-value=7.3e-08  Score=86.34  Aligned_cols=138  Identities=18%  Similarity=0.179  Sum_probs=79.5

Q ss_pred             CccccCCEEEEecCCCCCCCc-CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-------------   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-------------   66 (223)
                      +|+++|+++++|++++.+... ..-++|+|+++-|.+|++++.+   .|+++.++ ++.+++.....             
T Consensus       164 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g---~g~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~  239 (373)
T cd06453         164 IAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTG---IGVLYGKE-ELLEEMPPYGGGGEMIEEVSFEET  239 (373)
T ss_pred             HHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCC---cEEEEEch-HHhhcCCCeecCCCcccccccccc
Confidence            478999999999998766442 2235799999999999999743   46676654 44444332110             


Q ss_pred             -------hcCCCCChH-hHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           67 -------AEGSGLAPF-DCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        67 -------~~g~~~sp~-da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                             .+.....+. ...-+..+++.+     ..+.++..+.+..+.+.|+++|.++-+ .|     +         .
T Consensus       240 ~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~-----~---------~  304 (373)
T cd06453         240 TYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVY-GD-----A---------E  304 (373)
T ss_pred             ccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEe-CC-----c---------c
Confidence                   000011221 122223334432     334466677788888889888876433 22     1         1


Q ss_pred             CCCeeEEEEeCC--HHHHHHHHhhcC
Q 027424          134 GAGSVLSFLTGS--LALSKHVVETTK  157 (223)
Q Consensus       134 g~ggl~sf~~~~--~~~~~~f~~~l~  157 (223)
                      ..+++++|.+.+  .++..+++..-+
T Consensus       305 ~~~~~~~~~~~~~~~~~i~~~l~~~g  330 (373)
T cd06453         305 DRAGVVSFNLEGIHPHDVATILDQYG  330 (373)
T ss_pred             ccCCeEEEEECCcCHHHHHHHHHHCC
Confidence            136788998743  233444444433

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK07324 transaminase; Validated

Probab=98.83  E-value=1.1e-07  Score=85.87  Aligned_cols=114  Identities=17%  Similarity=0.106  Sum_probs=73.0

Q ss_pred             CccccCCEEEEecCCCCCCCc----CcccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|+++..-...    ..... .-.|++.|+||+++.+|..+|+++ + ++++.+++...+.....+.++.
T Consensus       181 ~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~-~-~~~li~~~~~~~~~~~~~~~~~  258 (373)
T PRK07324        181 IARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIA-A-NEEVIDILRKYRDYTMICAGVF  258 (373)
T ss_pred             HHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEe-c-CHHHHHHHHHHhCcEEecCChH
Confidence            378899999999997432111    11111 123889999999987888886654 4 5677777776665444445555


Q ss_pred             hHHHHHhcHH---HHHHHH-HHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           76 DCWICLRGVK---TMALRV-EKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        76 da~ll~~~l~---tl~~R~-~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      ..+.....++   .+..++ +...++...+.++|+.+|.+ .+..|
T Consensus       259 ~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~-~~~~p  303 (373)
T PRK07324        259 DDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRV-SYVKP  303 (373)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-eEECC
Confidence            5555545554   334444 44466778899999988765 44555

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=98.82  E-value=5.3e-08  Score=85.80  Aligned_cols=171  Identities=15%  Similarity=0.126  Sum_probs=102.8

Q ss_pred             CccccCCEEEEecCCCC------CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC--CC
Q 027424            1 MAHAHGALLLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--GL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~--~~   72 (223)
                      +|+++|++++||+++..      +.....+..++|+++.|+||++++.+   |+ ++..++++.++++......|.  ..
T Consensus       154 ~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~~~~  229 (338)
T cd06502         154 LAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPV---GA-VVVGNRDFIARARRRRKQAGGGMRQ  229 (338)
T ss_pred             HHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCcc---ce-EEECCHHHHHHHHHHHHHhCCChhh
Confidence            36789999999997521      11122334589999999999998653   44 444556677777655444332  23


Q ss_pred             ChHhHHHHHhcHHH--HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-CHHHH
Q 027424           73 APFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALS  149 (223)
Q Consensus        73 sp~da~ll~~~l~t--l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~~~~~  149 (223)
                      ++..++.....|+.  +..+.++..+++..+.+.|++++.  . .+|                ..++++.+... +....
T Consensus       230 ~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~-~~~----------------~~~~~~~v~~~~~~~~~  290 (338)
T cd06502         230 SGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGG--L-ESE----------------VQTNIVLLDPVEANAVF  290 (338)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCC--C-ccc----------------ccCCeEEEecCCccHHH
Confidence            45555666666655  556678888899999999998764  2 223                14677777663 43444


Q ss_pred             HHHHhhcCc-ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          150 KHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       150 ~~f~~~l~l-~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      .++.+.+.- ...    |    ++..++                 ..+.||+++++...++-++.+..+|+
T Consensus       291 ~~l~~~l~~~~~~----g----i~~~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~  336 (338)
T cd06502         291 VELSKEAIERRGE----G----VLFYAW-----------------GEGGVRFVTHWDTTEEDVDELLSALK  336 (338)
T ss_pred             HHHHHHHHHhhhC----C----EEEEec-----------------CCCeEEEEeecCCCHHHHHHHHHHHh
Confidence            444443210 000    1    000110                 12679999998855555566665654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=98.81  E-value=1.5e-07  Score=85.90  Aligned_cols=104  Identities=24%  Similarity=0.285  Sum_probs=69.4

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh-
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP-   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp-   74 (223)
                      +||++|+++++|++++.+..     ..++. ++|+++.|++|+++|+   .||+++++++++.++++.... .+...+| 
T Consensus       188 la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~g~---~gg~i~~~~~~~~~~l~~~~~-~~~~~~~~  262 (416)
T PRK00011        188 IADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLRGP---RGGLILTNDEELAKKINSAVF-PGIQGGPL  262 (416)
T ss_pred             HHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCCCC---CceEEEeCCHHHHHHHHHHhC-ccccCCcc
Confidence            47899999999999754432     34566 8999999999999765   377787766677776654432 1211112 


Q ss_pred             --HhHHHHHhcHH----HHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           75 --FDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        75 --~da~ll~~~l~----tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                        .-+.+....++    .+..+.++..+|+..+.+.|++.+
T Consensus       263 ~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  303 (416)
T PRK00011        263 MHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERG  303 (416)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence              11221122222    246678999999999999998753

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=98.81  E-value=2e-07  Score=84.19  Aligned_cols=104  Identities=15%  Similarity=0.155  Sum_probs=64.6

Q ss_pred             CccccCCEEEEecCCCCCCCc-C--------cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-R--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~--------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g   69 (223)
                      +|+++|+++++|++++.++.. +        .+..++|+++.|++|.++|.   -+|++++ ++++.+.+.....  ..+
T Consensus       195 la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~---r~G~~~~-~~~~~~~l~~~~~~~~~~  270 (393)
T TIGR01822       195 LADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGA---SGGFTTA-RKEVVELLRQRSRPYLFS  270 (393)
T ss_pred             HHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCC---CcEEEEe-CHHHHHHHHHhCccceec
Confidence            478999999999998544321 1        11236899999999999874   3577765 4566665544211  223


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcC
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~  108 (223)
                      .+..|.....+..+++.+   ..+.++..++...+.+.|++.
T Consensus       271 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  312 (393)
T TIGR01822       271 NSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA  312 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            334454333344555544   233466677777788888764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=98.81  E-value=3.1e-07  Score=82.28  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=81.3

Q ss_pred             CccccCCEEEEecCCCCCCCc-C--------cccCC-CcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-H-hc
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-R--------PLELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-N-AE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~--------pl~~G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~-~~   68 (223)
                      +|+++|+++|+|++++.+... .        .+... -+|++.|++|.+++.    ||+++. ++++.+.+.... . ..
T Consensus       193 ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~----Gg~~~~-~~~~~~~~~~~~~~~~~  267 (385)
T PRK05958        193 LARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSS----GAAVLG-SETLIDYLINRARPFIF  267 (385)
T ss_pred             HHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccC----CcEEEc-CHHHHHHHHHhCcccee
Confidence            478999999999998644221 0        12222 348899999999753    466654 455655543321 1 12


Q ss_pred             CCCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           69 GSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      +...+|..+..+..+++.+   ..+.++..++...+.+.|+..+ + +| +|                ..|++++|.+.+
T Consensus       268 ~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~-~~-~~----------------~~~~~~~~~~~~  328 (385)
T PRK05958        268 TTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALG-F-QL-MD----------------SQSAIQPLIVGD  328 (385)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-C-Cc-CC----------------CCCCEEEEEeCC
Confidence            3335666555566666654   3455777788888889998763 2 12 11                257788888854


Q ss_pred             HHHHHHHHhhc
Q 027424          146 LALSKHVVETT  156 (223)
Q Consensus       146 ~~~~~~f~~~l  156 (223)
                      .....+|.+.+
T Consensus       329 ~~~~~~~~~~l  339 (385)
T PRK05958        329 NERALALAAAL  339 (385)
T ss_pred             HHHHHHHHHHH
Confidence            44455566555

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=3.7e-07  Score=83.91  Aligned_cols=184  Identities=23%  Similarity=0.249  Sum_probs=110.6

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHH-----------------
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-----------------   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~-----------------   62 (223)
                      +||++|++++||.+.+.|. ..+.-++|+|+++-|.||++.|+  +-.|++.++++ +.+++.                 
T Consensus       187 la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP--~GiGvLy~r~~-~l~~l~P~~~gg~~~~~~~~~~~  263 (405)
T COG0520         187 LAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGP--TGIGVLYVRKE-LLEELEPFLGGGGMIEYVSRDEG  263 (405)
T ss_pred             HHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCC--CceEEEEEchH-HHhhcCCcccCCCceeeeccccc
Confidence            4899999999999977664 35555689999999999999988  33677877764 333221                 


Q ss_pred             ----HH-HHhcCCCCChHhHHHHHhcHHHHH-----HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           63 ----FL-QNAEGSGLAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        63 ----~~-~~~~g~~~sp~da~ll~~~l~tl~-----~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                          .. .+....+......+.+-.+++.+.     ...++..+.+..+.+.|+..|.| +++-|..             
T Consensus       264 ~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v-~i~g~~~-------------  329 (405)
T COG0520         264 VTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGV-EIYGPPD-------------  329 (405)
T ss_pred             ccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCe-EEecCCc-------------
Confidence                00 111122222233444445555542     22355566677788889999997 5665532             


Q ss_pred             CCCCeeEEEEeCC--HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 027424          133 KGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  210 (223)
Q Consensus       133 ~g~ggl~sf~~~~--~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL  210 (223)
                      ...++++||.+.+  ..+..++++.-+++   +.-|.      +++.      +.  -+..|++ +.+|+|.++=+.++=
T Consensus       330 ~~r~~~vsF~v~~~~~~dv~~~L~~~gI~---vr~g~------~ca~------p~--~~~~~~~-~~iR~S~~~YNt~ed  391 (405)
T COG0520         330 ADRGGIVSFNVKGIHPHDVATLLDEKGIA---VRAGH------HCAQ------PL--HRLLGVD-ATIRASLHLYNTEED  391 (405)
T ss_pred             ccCceEEEEEeCCCCHHHHHHHHHhCCeE---EEecc------cccc------HH--HHhcCCC-CceEEEEeecCCHHH
Confidence            1268999999843  56777778777743   22221      1111      11  1334443 449999997544444


Q ss_pred             HHHHHHHHh
Q 027424          211 ISDLDKALR  219 (223)
Q Consensus       211 ~~dl~~Al~  219 (223)
                      ++.|-+||+
T Consensus       392 id~l~~aL~  400 (405)
T COG0520         392 VDRLLEALK  400 (405)
T ss_pred             HHHHHHHHH
Confidence            444444444

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=98.81  E-value=7.4e-09  Score=90.70  Aligned_cols=101  Identities=23%  Similarity=0.250  Sum_probs=67.1

Q ss_pred             CccccCCEEEEecCCCCCCC------cCcccCCCcEEEecccccccCCcccceeEEEecChhH-HHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~-~~~l~~~~~~~g~~~s   73 (223)
                      +||++|++++||++++.++.      ....+.|+|++++|+||+++|  ..++|+++.+++.. ..++.......+ +.+
T Consensus       178 ~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~~~~~~~-tts  254 (294)
T cd00615         178 EAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNEALNLHQ-STS  254 (294)
T ss_pred             HHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccch--HhHHHHHHhCCCcCCHHHHHHHHHHHC-CCC
Confidence            47899999999999986432      234557999999999999985  45788887765422 234444444444 457


Q ss_pred             hHhHHHHHhcHHHHHH--------HHHHHHhHHHHHHHHHh
Q 027424           74 PFDCWICLRGVKTMAL--------RVEKQQDNAQKIAEFLA  106 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--------R~~~~~~na~~la~~L~  106 (223)
                      |  +|+++.+++....        ++++..+++..+.++|+
T Consensus       255 p--s~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         255 P--SYLILASLDVARAMMALEGKELVEELIELALYARQEIN  293 (294)
T ss_pred             c--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            7  7888888776432        23445555555555543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=98.80  E-value=2.6e-07  Score=83.19  Aligned_cols=104  Identities=18%  Similarity=0.160  Sum_probs=65.1

Q ss_pred             CccccCCEEEEecCCCCCCCcC---------cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~---------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g   69 (223)
                      +|+++|++||+|++++.++...         .+..+.|+++.|++|.++|.   .+|+++++ +++.+.+.....  ..+
T Consensus       199 la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~---r~G~v~~~-~~~~~~l~~~~~~~~~~  274 (397)
T PRK06939        199 LADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGA---SGGYTAGR-KEVIDWLRQRSRPYLFS  274 (397)
T ss_pred             HHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCcc---CceEEEeC-HHHHHHHHHhCcccccc
Confidence            4789999999999985443211         12225789999999999764   35777654 556666543221  223


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcC
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~  108 (223)
                      .+..|..++.+..+++.+   ..+.++..++...+.+.|+..
T Consensus       275 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  316 (397)
T PRK06939        275 NSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA  316 (397)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            334454444445555554   233466667778888888765

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=98.80  E-value=2.9e-07  Score=81.34  Aligned_cols=103  Identities=23%  Similarity=0.233  Sum_probs=69.7

Q ss_pred             CccccCCEEEEecCCCCCCC---------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL---------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~---------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g   69 (223)
                      +|+++|+++++|++++.+..         ....+.++|+++.|+||.+++.    ||+++.+ +++.+.+.....  ..+
T Consensus       157 ~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----gG~i~~~-~~~~~~~~~~~~~~~~~  231 (349)
T cd06454         157 LAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAV----GGYIAGS-KELIDYLRSYARGFIFS  231 (349)
T ss_pred             HHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhccc----CCEEECC-HHHHHHHHHhchhhhcc
Confidence            47899999999999863321         1123468999999999999852    4766554 455555544322  123


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcC
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~  108 (223)
                      ...++.....+..+++.+   ..+.++..+++..+.+.|++.
T Consensus       232 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  273 (349)
T cd06454         232 TSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL  273 (349)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            356666666666777765   445677788888888888775

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=98.77  E-value=3.4e-07  Score=82.62  Aligned_cols=106  Identities=16%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh--------cCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--------EGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~--------~g~~   71 (223)
                      +||++|++++||++++.+. ...+..+++|+++.|++|++++.+ . .|+++++ +++.+.+......        .+.+
T Consensus       171 la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g-~-~G~l~~~-~~~i~~l~~~~~~~~~~~~~~~~~~  247 (370)
T TIGR02539       171 VCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASG-P-CGVLGMS-EEWEDIVLRKSRYSPVKEVELLGCT  247 (370)
T ss_pred             HHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCC-C-EEEEEEC-HHHHhhhcccccCCccceeeeeccc
Confidence            4789999999999997653 334556789999999999998532 2 4677665 4565655443221        1111


Q ss_pred             CChHhHHHHHhcHHHHHH---HHHHHHhHHHHHHHHHhcCC
Q 027424           72 LAPFDCWICLRGVKTMAL---RVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~---R~~~~~~na~~la~~L~~~p  109 (223)
                      ..+..+..+..+++....   ++.+..+++..+.+.|++.+
T Consensus       248 ~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g  288 (370)
T TIGR02539       248 SRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIG  288 (370)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            111124445556654333   34566777788999998875

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=98.75  E-value=4.3e-07  Score=82.64  Aligned_cols=174  Identities=18%  Similarity=0.221  Sum_probs=104.3

Q ss_pred             CccccCCEEEEecCCCCCCC----c---C--cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----S---R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~---~--pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g   69 (223)
                      +|+++|++++||++++.++.    .   .  .+....||++.|++|.+++.    ||++++ ++++.+.+.....  .+.
T Consensus       202 l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~----GG~i~~-~~~~~~~l~~~~~~~~~t  276 (402)
T TIGR01821       202 LADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV----GGYIAA-SRKLIDAIRSYAPGFIFT  276 (402)
T ss_pred             HHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC----Cceeec-CHHHHHHHHHhCcCceec
Confidence            47899999999999763321    0   0  12224689999999999854    576654 4556665543222  123


Q ss_pred             CCCChHhHHHHHhcHHHHH---HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl~---~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      ...+|..+..+..+|+.+.   .+.++..++...+.+.|++.. + .+ +|                ..|+++.|.+++.
T Consensus       277 ~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~-~~----------------~~~~i~~i~~~~~  337 (402)
T TIGR01821       277 TSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALG-I-PV-IP----------------NPSHIVPVIIGDA  337 (402)
T ss_pred             CcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcC-C-Cc-CC----------------CCCCEEEEEeCCH
Confidence            3467766666667777643   334556688888889888752 2 11 11                1366778877654


Q ss_pred             HHHHHHHhhc----CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe----cCCCHHHHHHHHHHHH
Q 027424          147 ALSKHVVETT----KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKAL  218 (223)
Q Consensus       147 ~~~~~f~~~l----~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv----GlEd~~dL~~dl~~Al  218 (223)
                      +.+.+|.+.|    +++-..         +..|..      +        -....||+|+    --||.+.+++.|++++
T Consensus       338 ~~a~~~~~~L~~~~Gi~v~~---------~~~p~~------~--------~g~~~lRis~~~~~t~edi~~~~~~l~~~~  394 (402)
T TIGR01821       338 ALCKKVSDLLLNKHGIYVQP---------INYPTV------P--------RGTERLRITPTPAHTDKMIDDLVEALLLVW  394 (402)
T ss_pred             HHHHHHHHHHHhcCCEEEEe---------ECCCCC------C--------CCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            4455555543    232111         111110      0        0135799996    3467888888888887


Q ss_pred             hcC
Q 027424          219 RTG  221 (223)
Q Consensus       219 ~~~  221 (223)
                      +..
T Consensus       395 ~~~  397 (402)
T TIGR01821       395 DRL  397 (402)
T ss_pred             HHc
Confidence            654

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=98.73  E-value=3.7e-07  Score=82.84  Aligned_cols=182  Identities=20%  Similarity=0.141  Sum_probs=100.8

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--------------   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--------------   65 (223)
                      +||++|++++||++.+.+.. .+.-++++|+++-|.+|+++..+   .|++..++ ++.+++....              
T Consensus       182 ~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  257 (398)
T TIGR03392       182 LAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTG---IGVLYGKT-ELLEAMPPWQGGGKMLSHVSFDGF  257 (398)
T ss_pred             HHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCc---eEEEEEcH-HHHhhCCCeecCCceEeecccccc
Confidence            47899999999999864432 23334689999999999776444   46676654 4444332110              


Q ss_pred             -------HhcCCCCChHhHHHHHhcHHHHH-----HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           66 -------NAEGSGLAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        66 -------~~~g~~~sp~da~ll~~~l~tl~-----~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                             +....+.+.....-+..+++.+.     ...++..+.+..+.+.|++.|.+. +..+     |          
T Consensus       258 ~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~-~~~~-----~----------  321 (398)
T TIGR03392       258 IPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFR-SFRC-----P----------  321 (398)
T ss_pred             ccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeE-EeCC-----C----------
Confidence                   00011222223334445555432     223455566777888888888764 3211     1          


Q ss_pred             CCCeeEEEEeCC--HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCH
Q 027424          134 GAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDV  207 (223)
Q Consensus       134 g~ggl~sf~~~~--~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~  207 (223)
                       .+++++|.+.+  .+...+.++.-++   .++-|..-+              ....+.+|. ++.||+|++.    ||+
T Consensus       322 -~~~i~~~~~~~~~~~~l~~~L~~~gI---~v~~g~~~~--------------~~~~~~~g~-~~~iRvS~~~~~t~~ei  382 (398)
T TIGR03392       322 -GSSLLAFDFAGVHHSDLAALLAESGI---ALRAGQHCA--------------QPLMAALGV-SGTLRASFAPYNTQQDV  382 (398)
T ss_pred             -CCcEEEEEeCCcCHHHHHHHHHhCCE---EEecCccch--------------HHHHHHhCC-CCEEEEEeeccCCHHHH
Confidence             24689888743  2333333333332   223222100              011122342 4789999976    677


Q ss_pred             HHHHHHHHHHHhcC
Q 027424          208 NDLISDLDKALRTG  221 (223)
Q Consensus       208 ~dL~~dl~~Al~~~  221 (223)
                      +.+++-|+++++..
T Consensus       383 ~~l~~~l~~~~~~~  396 (398)
T TIGR03392       383 DALVDAVGAALELL  396 (398)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888777653

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02483 serine palmitoyltransferase

Probab=98.73  E-value=5.6e-07  Score=84.59  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             CccccCCEEEEecCCCCCCC---------cCcc-cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hc
Q 027424            1 MAHAHGALLLVDNSIMSPVL---------SRPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~---------~~pl-~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~   68 (223)
                      +|+++|+++++|++++-+..         .-.+ ..+.||++.|+||.+++.    ||++++ ++++.+.++....  ..
T Consensus       265 la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~----GG~i~~-~~~li~~l~~~~~~~~~  339 (489)
T PLN02483        265 VCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSC----GGYIAG-SKELIQYLKRTCPAHLY  339 (489)
T ss_pred             HHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccC----ceEEEc-CHHHHHHHHHhCccccc
Confidence            47899999999999853321         0111 136799999999999864    587764 5567666654321  23


Q ss_pred             CCCCChHhHHHHHhcHHHH---------HHHHHHHHhHHHHHHHHHhcC
Q 027424           69 GSGLAPFDCWICLRGVKTM---------ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~tl---------~~R~~~~~~na~~la~~L~~~  108 (223)
                      +..++|..+..+..+|+.+         ..|.++..+|...+.+.|++.
T Consensus       340 ~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~  388 (489)
T PLN02483        340 ATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM  388 (489)
T ss_pred             cCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC
Confidence            4456665555566667543         245678888999999999886

>PRK06108 aspartate aminotransferase; Provisional

Probab=98.72  E-value=2.9e-07  Score=82.69  Aligned_cols=109  Identities=18%  Similarity=0.147  Sum_probs=65.3

Q ss_pred             CccccCCEEEEecCCCCCCCc------CcccC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS------RPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~------~pl~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|+++|+++|+|++++.....      ..+.+    .-.+++.|++|.++..+..+|. +++ ++++.+.+.........
T Consensus       186 ~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~-~~~-~~~~~~~~~~~~~~~~~  263 (382)
T PRK06108        186 HCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGW-LVA-PPALGQVLEKLIEYNTS  263 (382)
T ss_pred             HHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceee-eeC-CHHHHHHHHHHHHhccc
Confidence            368899999999996432211      11111    2348899999999766666665 444 45566666554443333


Q ss_pred             CCChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           71 GLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        71 ~~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ..++.....+...|+.    +....++..++...+.+.|+..|.+
T Consensus       264 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  308 (382)
T PRK06108        264 CVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGV  308 (382)
T ss_pred             CCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4455443344444432    3333455666777788888887654

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=98.72  E-value=8.5e-07  Score=78.49  Aligned_cols=132  Identities=19%  Similarity=0.174  Sum_probs=80.4

Q ss_pred             CccccCCEEEEecCCCCCCC-cC--c------c-cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hc
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SR--P------L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~--p------l-~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~   68 (223)
                      +|+++|+++|+|++++.... ..  +      + ..+.||++.|++|++++.    ||+++. ++++.+.+.....  ..
T Consensus       171 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~----gG~~~~-~~~~~~~~~~~~~~~~~  245 (360)
T TIGR00858       171 LAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSY----GAYVAG-SQALIDYLINRARTLIF  245 (360)
T ss_pred             HHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhcc----CcEEEc-CHHHHHHHHHhCcccee
Confidence            47899999999999853321 11  1      1 237899999999999864    477765 4456555543222  12


Q ss_pred             CCCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           69 GSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      +...+|.....+..+++.+   ..+.++..++...+.+.|++.+ + ++. |                ..|.++.+.++.
T Consensus       246 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~-~~~-~----------------~~~~~~~~~~~~  306 (360)
T TIGR00858       246 STALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALG-F-TLM-P----------------SCTPIVPVIIGD  306 (360)
T ss_pred             cCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC-C-ccC-C----------------CCCCEEEEEeCC
Confidence            3334565444444555533   3455778888889999998764 2 221 2                146688888754


Q ss_pred             HHHHHHHHhhc
Q 027424          146 LALSKHVVETT  156 (223)
Q Consensus       146 ~~~~~~f~~~l  156 (223)
                      .....+|.+.+
T Consensus       307 ~~~~~~~~~~l  317 (360)
T TIGR00858       307 NASALALAEEL  317 (360)
T ss_pred             HHHHHHHHHHH
Confidence            33345555554

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=98.71  E-value=3.6e-07  Score=83.81  Aligned_cols=188  Identities=20%  Similarity=0.217  Sum_probs=98.0

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH---------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---------------   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~---------------   64 (223)
                      +||++|++++||.+++.+.. .+.-++|+|+++.|++|+++.++   .|++.++++ +.+++...               
T Consensus       198 l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~-~~~~~~p~~~g~~~~~~~~~~~~  273 (424)
T PLN02855        198 WAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTG---IGFLWGKSD-LLESMPPFLGGGEMISDVFLDHS  273 (424)
T ss_pred             HHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCc---cEEEEEchh-hhhcCCCEecCCCceeeeecCcc
Confidence            47899999999999865532 33345789999999999665443   466766653 33332211               


Q ss_pred             ------HHhcCCCCChHhHHHHHhcHHHHH-----HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           65 ------QNAEGSGLAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        65 ------~~~~g~~~sp~da~ll~~~l~tl~-----~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                            .+....+.+....+.+..+++.+.     ...++..+-+..+.+.|++.|.+ +++-|. ++.+.         
T Consensus       274 ~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~-~i~~~~-~~~~~---------  342 (424)
T PLN02855        274 TYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGV-RIYGPK-PSEGV---------  342 (424)
T ss_pred             ccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCC-ccccc---------
Confidence                  000011112222233344444331     11234445556667777777876 455441 11111         


Q ss_pred             CCCeeEEEEeCCHHHHHHHHhhcCc-ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHH
Q 027424          134 GAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVN  208 (223)
Q Consensus       134 g~ggl~sf~~~~~~~~~~f~~~l~l-~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~  208 (223)
                      ..+++++|.+.+. ....+.+.|.- +.+.++-|..-+    +          ......|+ ++.||+|+++    ||++
T Consensus       343 ~r~~~v~~~~~~~-~~~~v~~~L~~~~gI~v~~g~~c~----~----------~~~~~~g~-~~~iRiS~~~ynt~~di~  406 (424)
T PLN02855        343 GRAALCAFNVEGI-HPTDLSTFLDQQHGVAIRSGHHCA----Q----------PLHRYLGV-NASARASLYFYNTKEEVD  406 (424)
T ss_pred             CcccEEEEEECCc-CHHHHHHHhcccCCEEEechhhhh----H----------HHHHHhCC-CCeEEEEeccCCCHHHHH
Confidence            1368999988431 12233333321 122223222110    0          01123454 4689999985    5667


Q ss_pred             HHHHHHHHHHh
Q 027424          209 DLISDLDKALR  219 (223)
Q Consensus       209 dL~~dl~~Al~  219 (223)
                      .|++.|++.++
T Consensus       407 ~l~~~l~~~~~  417 (424)
T PLN02855        407 AFIHALKDTIA  417 (424)
T ss_pred             HHHHHHHHHHH
Confidence            77777776654

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=98.71  E-value=5.3e-07  Score=81.54  Aligned_cols=108  Identities=21%  Similarity=0.279  Sum_probs=80.5

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCC----cEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHh-------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGA----DIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA-------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GA----Divv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~-------   67 (223)
                      +|+++|++||+|++++.+..++.-..|.    |+++.|++  |+++..   .||+++.+++++.++++..+..       
T Consensus       143 l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~---~GG~v~~~~~~~~~~~~~~~~~g~~~~~~  219 (380)
T TIGR03588       143 LAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTA---EGGAVTTNDEELAERMRLLRSHGITKDPL  219 (380)
T ss_pred             HHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCccccc---CceEEEECCHHHHHHHHHHHHCCCCCCcc
Confidence            4789999999999987654333333445    99999986  889743   5888888888887766544320       


Q ss_pred             ----------------cC--CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           68 ----------------EG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        68 ----------------~g--~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                                      .|  ..++...+.+.+..|+.+..+.++..+|+..+.+.|++.|.+
T Consensus       220 ~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~  281 (380)
T TIGR03588       220 LFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYF  281 (380)
T ss_pred             cccccccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence                            11  234556667777778889999999999999999999998865

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=98.71  E-value=4.4e-08  Score=95.17  Aligned_cols=102  Identities=15%  Similarity=0.114  Sum_probs=72.8

Q ss_pred             cccCCEE-EEecCCCCCCCcCc-------ccC--CCcEE---EecccccccCCcccceeEEEecChhHHHHHHHHHHhcC
Q 027424            3 HAHGALL-LVDNSIMSPVLSRP-------LEL--GADIV---MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG   69 (223)
Q Consensus         3 ~~~g~~l-vVDnT~~s~~~~~p-------l~~--GADiv---v~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g   69 (223)
                      +..|+++ +||++|++++.++|       +..  |||.+   +||+||+++  +.+|+.++++++.--.+++.....+++
T Consensus       320 ~~~g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~--alTQaS~iHvk~~vd~~~~n~a~~m~~  397 (713)
T PRK15399        320 QTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLA--AFSQASLIHIKGEYDEETFNEAFMMHT  397 (713)
T ss_pred             HHhCCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhcccc--ccchheeeeecCCCCHHHHHHHHHHHc
Confidence            3447877 59999998765554       333  68988   999999999  778999999977422356666666666


Q ss_pred             CCCChHhHHHHHhcHHHHHHHH---------HHHHhHHHHHHHHHhcCC
Q 027424           70 SGLAPFDCWICLRGVKTMALRV---------EKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl~~R~---------~~~~~na~~la~~L~~~p  109 (223)
                       +.||  +|+++.||+....-|         ++..+.+..+.+.+++.+
T Consensus       398 -STSP--sY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~  443 (713)
T PRK15399        398 -STSP--SYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLR  443 (713)
T ss_pred             -CCCc--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence             6799  999999999864433         334555555555555443

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=98.69  E-value=6.4e-07  Score=79.56  Aligned_cols=107  Identities=16%  Similarity=0.091  Sum_probs=67.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCcc-c----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl-~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|+++.......++ .    .+.+|++.|+||+++.++..+|+ ++.+ +++.+++......  ...++.
T Consensus       153 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~-i~~~-~~~~~~l~~~~~~--~~~s~~  228 (330)
T TIGR01140       153 RLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGF-VVAH-PALLARLREALGP--WTVNGP  228 (330)
T ss_pred             HhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhh-eeCC-HHHHHHHHhcCCC--CCchHH
Confidence            368899999999998644322221 1    24569999999999877766655 5444 4566666544322  234454


Q ss_pred             hHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           76 DCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        76 da~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ....+.+-++.   .....++..++...+.+.|++++.+
T Consensus       229 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  267 (330)
T TIGR01140       229 ARAAGRAALADTAWQAATRARLAAERARLAALLARLGGL  267 (330)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            44444444443   2333466677778888999988754

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=98.67  E-value=6.6e-07  Score=81.73  Aligned_cols=177  Identities=17%  Similarity=0.191  Sum_probs=102.4

Q ss_pred             CccccCCEEEEecCCCCCCC-cC--------cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SR--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~--------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g   69 (223)
                      +|+++|++++||++++.+++ .+        .+....|+++.|++|.+++.    ||++++ ++++.+.++....  ..+
T Consensus       203 l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~----GG~~~~-~~~~~~~l~~~~~~~~~s  277 (410)
T PRK13392        203 LADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL----GGYIAA-SADLIDFVRSFAPGFIFT  277 (410)
T ss_pred             HHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc----cchhhc-CHHHHHHHHHhCcchhcc
Confidence            47889999999999874432 11        12225789999999999854    577755 4566665554432  123


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      ..++|..++.+..+|+.+   ..+.++..++...+.+.|++.. + .+ +|                +.++++.+.++..
T Consensus       278 ~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~-~~----------------~~~~~~~i~~~~~  338 (410)
T PRK13392        278 TALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANG-I-PV-MP----------------SPSHIVPVMVGDP  338 (410)
T ss_pred             CcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-C-CC-CC----------------CCCCEEEEEeCCH
Confidence            345665566566666654   3444667888888888888752 2 11 12                1355565666544


Q ss_pred             HHHHHHHhhcC-cceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhcC
Q 027424          147 ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  221 (223)
Q Consensus       147 ~~~~~f~~~l~-l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al~~~  221 (223)
                      ..+.+|.+.|. --.+.++-+      ..|..      +        -..+.+|+|+-    -||.+.+++.|+++++..
T Consensus       339 ~~~~~~~~~L~~~~GI~v~~~------~~p~~------~--------~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~  398 (410)
T PRK13392        339 TLCKAISDRLMSEHGIYIQPI------NYPTV------P--------RGTERLRITPTPLHDDEDIDALVAALVAIWDRL  398 (410)
T ss_pred             HHHHHHHHHHHHhCCEEEeee------CCCCC------C--------CCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence            34445554431 111111111      11110      0        02357999973    456777888887776643

>PLN02651 cysteine desulfurase

Probab=98.67  E-value=4.3e-07  Score=81.60  Aligned_cols=180  Identities=17%  Similarity=0.105  Sum_probs=96.2

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-------HhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-------~~~g~~~   72 (223)
                      +||++|++++||.+.+.+. .+++-++|+|+++.|.+|+++.++   .|++..+++.+ .++....       .....+.
T Consensus       163 ~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G---~g~l~v~~~~~-~~l~p~~~g~~~~~~~~~GT~  238 (364)
T PLN02651        163 LCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKG---VGALYVRRRPR-VRLEPLMSGGGQERGRRSGTE  238 (364)
T ss_pred             HHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCc---eEEEEEcCCCC-CCCCccccCCCccCCccCCCc
Confidence            4789999999999988763 466667899999999999843332   45566665322 1111100       0111233


Q ss_pred             ChHhHHHHHhcHHHHHHHHH----HHHhHHHHHHHHHhc-CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHH
Q 027424           73 APFDCWICLRGVKTMALRVE----KQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  147 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R~~----~~~~na~~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~  147 (223)
                      +....+-+..+++.+..-++    +..+-+..+.+.|++ .|.+ +++-|.-   |.        ....++++|.+.+..
T Consensus       239 ~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~-~i~~~~~---~~--------~~~~~i~~~~~~~~~  306 (364)
T PLN02651        239 NTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGV-RVNGPRD---PE--------KRYPGTLNLSFAYVE  306 (364)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCE-EEECCCC---cc--------cCcCCEEEEEeCCCC
Confidence            33334455566665533233    333344445555554 4666 5555521   10        013679999884311


Q ss_pred             HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC----CCeEEEEecCCCH
Q 027424          148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGIEDV  207 (223)
Q Consensus       148 ~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~----~~liRlsvGlEd~  207 (223)
                       .+.+...|.-  +.++.|..=+    +.....    ...-+.+|+.    .+.||+|+|.-..
T Consensus       307 -~~~~~~~L~~--i~v~~g~~c~----~~~~~~----~~~~~~~g~~~~~~~~~vR~S~~~~~t  359 (364)
T PLN02651        307 -GESLLMGLKE--VAVSSGSACT----SASLEP----SYVLRALGVPEEMAHGSLRLGVGRFTT  359 (364)
T ss_pred             -HHHHHHHhCC--EEEEchhhcC----CCCCCc----CHHHHHcCCChHHhCceEEEEcCCCCC
Confidence             1233333332  5566663211    111000    0122445654    4899999997653

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=98.66  E-value=1.1e-06  Score=78.61  Aligned_cols=106  Identities=21%  Similarity=0.193  Sum_probs=66.8

Q ss_pred             CccccCCEEEEecCCCCCCCcCc----ccCCCc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP----LELGAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p----l~~GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|++++......+    ...+.|  |++.|+||+++.++..+|. ++ .++.+.++++......+.+.++
T Consensus       164 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~-~~-~~~~~~~~~~~~~~~~~~~~~~  241 (350)
T TIGR03537       164 MCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGF-VA-GDEKLISFLRKLRANFGVASPD  241 (350)
T ss_pred             HHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCcccccee-ee-cCHHHHHHHHHHHHhhccCCCH
Confidence            37889999999999864322211    222333  9999999999877777764 54 4566777777666555544444


Q ss_pred             HhHHHHHhcHH---HHHHHHHHHHhHHHHHHHHHhcC
Q 027424           75 FDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        75 ~da~ll~~~l~---tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      .....+...+.   .+..+.++..++...+.+.|+.+
T Consensus       242 ~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~  278 (350)
T TIGR03537       242 FVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV  278 (350)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            33333333332   23344466667777788888876

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=98.66  E-value=3.9e-07  Score=82.05  Aligned_cols=193  Identities=16%  Similarity=0.160  Sum_probs=101.4

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHH-HHH--HHH--HhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELY--FLQ--NAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~-~l~--~~~--~~~g~~~sp   74 (223)
                      +||++|++++||.+.+.+.. .+.-++|+|+++.|.+|+++..|   .|++.++++.... .+.  ...  ...| +.+.
T Consensus       161 l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~g~l~v~~~~~~~p~~~g~~~~~~~~~g-t~~~  236 (379)
T TIGR03402       161 IAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKG---VGALYIRKGTRFRPLLRGGHQERGRRAG-TENV  236 (379)
T ss_pred             HHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCc---eEEEEECCCCCCCCcccCCccCCCcCCC-CccH
Confidence            47899999999999865532 33345799999999999654333   4556566532110 000  000  0112 2232


Q ss_pred             HhHHHHHhcHHHHHHHH----HHHHhHHHHHHHHHhc-CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHH
Q 027424           75 FDCWICLRGVKTMALRV----EKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  149 (223)
Q Consensus        75 ~da~ll~~~l~tl~~R~----~~~~~na~~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~  149 (223)
                      ...+-+..+++-+...+    ++..+....+.+.|++ .|.+ ++.-|     +.        ....++++|.+.+.+ .
T Consensus       237 ~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~-----~~--------~~~~~~~~~~~~~~~-~  301 (379)
T TIGR03402       237 PGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDA-RLNGD-----PT--------KRLPNTVNISFEYIE-G  301 (379)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCE-EEeCC-----Cc--------cCCCCEEEEEecCCC-H
Confidence            22333444554443333    4444455566666664 6665 23221     11        012467877763221 2


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC----CCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~----~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      ..+...|.-..+.++.|..-+-   +..     .+....+.+|.+    ++.||+|.|.    ||++.+++-|+++++.
T Consensus       302 ~~~~~~l~~~gI~v~~g~~c~~---~~~-----~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~  372 (379)
T TIGR03402       302 EAILLLLDMEGICASSGSACTS---GSL-----EPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIAR  372 (379)
T ss_pred             HHHHHhhccCCEEEEchhhcCC---CCC-----CcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3455555443444555532111   100     001223455653    5789999998    7778888888777653

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=98.66  E-value=1.1e-06  Score=78.83  Aligned_cols=173  Identities=14%  Similarity=0.158  Sum_probs=96.5

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Cccc-CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|+++......     .+++ ....+++.|+||+++-.+..+|.++ ..++.+.+.+.....  ....++
T Consensus       170 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v-~~~~~~~~~l~~~~~--~~~~~~  246 (356)
T PRK08056        170 RCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLV-NSDDAAVARMRRQQM--PWSINA  246 (356)
T ss_pred             HHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeee-cCCHHHHHHHHHhCC--CCchhH
Confidence            368899999999997432211     1122 2356999999999998898887755 444555555543221  112344


Q ss_pred             HhHHHHHhcHH--HHHHH-HHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-C-HHHH
Q 027424           75 FDCWICLRGVK--TMALR-VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-S-LALS  149 (223)
Q Consensus        75 ~da~ll~~~l~--tl~~R-~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~-~~~~  149 (223)
                      ...+.....++  .+..+ .++..++...+.+.|+..+.+ .+ +|.                .|..+-+.+. + .+.+
T Consensus       247 ~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-~~~----------------~~~~~~~~~~~~~~~~~  308 (356)
T PRK08056        247 FAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLL-TV-WPG----------------RANYLFLRCERPDIDLQ  308 (356)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-EE-cCC----------------CCcEEEEEcCCChHHHH
Confidence            43333333332  22333 355567778888999887765 33 331                2344444443 2 2222


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  219 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-Ed~~dL~~dl~~Al~  219 (223)
                      +.+. .-++.   +.-|..            +         .|..++.||||+|- |+.+.|++.|++.++
T Consensus       309 ~~l~-~~gI~---v~~~~~------------f---------~~~~~~~iRis~~~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        309 RALL-TQRIL---IRSCAN------------Y---------PGLDSRYYRVAIRSAAENERLLAALRNVLT  354 (356)
T ss_pred             HHHH-HCCeE---EEECCC------------C---------CCCCCCEEEEEEcCHHHHHHHHHHHHHHHc
Confidence            2222 22321   111110            0         01235689999997 677888888887654

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=98.64  E-value=1.4e-06  Score=78.20  Aligned_cols=170  Identities=17%  Similarity=0.232  Sum_probs=99.2

Q ss_pred             ccccCCEEEEecCCCCCCCc----CcccC-CC-c--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            2 AHAHGALLLVDNSIMSPVLS----RPLEL-GA-D--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~----~pl~~-GA-D--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      |+++|+++|+|+++.-....    .++.. .. +  |++.|+||.++-.|..+|.++ ..++.+.+.+......  ..++
T Consensus       170 a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv-~~~~~~~~~~~~~~~~--~~~~  246 (354)
T PRK06358        170 CEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGL-TSNKNLAEKLLQMREP--WSIN  246 (354)
T ss_pred             HHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeee-cCCHHHHHHHHHhCCC--Ccch
Confidence            67899999999997422211    11211 11 2  889999999987788887654 4455565555544322  2344


Q ss_pred             hHhHHHHHhcHH---HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC-HHHH
Q 027424           74 PFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALS  149 (223)
Q Consensus        74 p~da~ll~~~l~---tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~-~~~~  149 (223)
                      ....+.....++   .+....+...++...+.+.|+.+|.+ .|..|                 .|+.+.+.+.+ .+.+
T Consensus       247 ~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~~~~-----------------~g~f~~~~~~~~~~~~  308 (354)
T PRK06358        247 TFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGI-KVYKP-----------------SVNFIFFKLEKPIDLR  308 (354)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCc-EEcCC-----------------cceEEEEEcCchHHHH
Confidence            444445555553   23444566677778888999887763 33333                 34555566643 2333


Q ss_pred             HHHHhhcCcc-eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHH
Q 027424          150 KHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  218 (223)
Q Consensus       150 ~~f~~~l~l~-~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-Ed~~dL~~dl~~Al  218 (223)
                      +++.+ -++. ..+..+|                         +..++.||||+|- |+.+.|++-|++.+
T Consensus       309 ~~l~~-~gI~v~~~~~f~-------------------------~~~~~~iRls~~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        309 KELLK-KGILIRSCSNYR-------------------------GLDENYYRVAVKSREDNKKLLKALEVIL  353 (354)
T ss_pred             HHHHH-CCeEEEECCCCC-------------------------CCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence            33332 2321 1111111                         1135789999997 77888888887654

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=98.64  E-value=1.3e-06  Score=79.74  Aligned_cols=174  Identities=17%  Similarity=0.239  Sum_probs=102.4

Q ss_pred             CccccCCEEEEecCCCCCCC-c--------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh--cC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-S--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~--------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~--~g   69 (223)
                      +|+++|+.++||++++.+++ .        ..+....||++.|++|.+++.    ||++++ ++++.+.+......  .+
T Consensus       202 l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~----GG~~~~-~~~~~~~l~~~~~~~~~t  276 (406)
T PRK13393        202 VAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM----GGYITG-SAALCDFIRSFASGFIFT  276 (406)
T ss_pred             HHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc----CceeeC-CHHHHHHHHHhCcCceec
Confidence            47899999999999864431 1        012223689999999999853    577754 45565555443221  23


Q ss_pred             CCCChHhHHHHHhcHHHHH---HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl~---~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      .+.+|..+..+..+|+.+.   .+.++..++...+.+.|++.. .     +-.             ++.|+++.+.+++.
T Consensus       277 ~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-----~~~-------------~~~~~i~~v~~~~~  337 (406)
T PRK13393        277 TSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAG-I-----PHL-------------PNPSHIVPVMVGDP  337 (406)
T ss_pred             CccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC-C-----CcC-------------CCCCCeEEEEeCCH
Confidence            4567766666667776542   233555677888888887632 1     111             23567888877554


Q ss_pred             HHHHHHHhhc----CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHH
Q 027424          147 ALSKHVVETT----KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKAL  218 (223)
Q Consensus       147 ~~~~~f~~~l----~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al  218 (223)
                      ..+.++.+.|    +++-..   +      ..|..      +      .  ..+.||||+.    -||.+.+++.|++++
T Consensus       338 ~~~~~l~~~L~~~~Gi~v~~---~------~~p~~------p------~--g~~~iRis~~~~~t~edid~l~~~l~~~~  394 (406)
T PRK13393        338 VLCKQISDELLDRYGIYVQP---I------NYPTV------P------R--GTERLRITPSPLHTDADIEHLVQALSEIW  394 (406)
T ss_pred             HHHHHHHHHHHHhCCEEEEe---E------CCCCC------C------C--CCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            3444554443    333211   1      11210      0      0  2357999996    456777777777776


Q ss_pred             hcC
Q 027424          219 RTG  221 (223)
Q Consensus       219 ~~~  221 (223)
                      +..
T Consensus       395 ~~~  397 (406)
T PRK13393        395 ARL  397 (406)
T ss_pred             Hhc
Confidence            644

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=98.63  E-value=8.2e-07  Score=79.55  Aligned_cols=188  Identities=19%  Similarity=0.214  Sum_probs=104.6

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH---------------H
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---------------L   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~---------------~   64 (223)
                      +||++|++++||.+++.+.. ...-+.|+|+++.|.+|+++|+.. .|+++ .+++.....+..               .
T Consensus       162 l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g-~g~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (376)
T TIGR01977       162 LAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQG-TGGLY-IREGIKLKPLKSGGTGSHSALIDQPSEL  239 (376)
T ss_pred             HHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCC-ceEEE-EcCCcCcCceecCCCccccccccccccc
Confidence            47899999999999876543 233346999999999999988642 34444 444321111100               0


Q ss_pred             -HHhcCCCCChHhHHHHHhcHHHHH-----HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCee
Q 027424           65 -QNAEGSGLAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  138 (223)
Q Consensus        65 -~~~~g~~~sp~da~ll~~~l~tl~-----~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl  138 (223)
                       .+....+.+....+-+..+++.+.     ...+++.+.++.+.+.|++.+.+ ++.-|.-   +         ...+++
T Consensus       240 ~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~~---~---------~~~~~~  306 (376)
T TIGR01977       240 PDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKV-KIYGPAD---P---------ANRVGV  306 (376)
T ss_pred             hhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCe-EEeCCCC---c---------cccCCe
Confidence             001111222222333444555442     23467778888888899888876 4543311   1         113678


Q ss_pred             EEEEeCC--HHHHHHHHhhc-CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcC-CCCCeEEEEecCCCHHHHHHHH
Q 027424          139 LSFLTGS--LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG-LTEDLVRISVGIEDVNDLISDL  214 (223)
Q Consensus       139 ~sf~~~~--~~~~~~f~~~l-~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g-i~~~liRlsvGlEd~~dL~~dl  214 (223)
                      ++|.+.+  .+...+.+++- ++   .++-|...+...              ....| ..++.||+|++....++=++.+
T Consensus       307 v~~~~~~~~~~~~~~~L~~~~gi---~v~~g~~~~~~~--------------~~~~g~~~~~~iRis~~~~~t~~dv~~~  369 (376)
T TIGR01977       307 VSFTVEGIDSEEVADILDEKFDI---ATRTGLHCAPLA--------------HKTIGTFATGTIRLSLGYFNTEEEIEKL  369 (376)
T ss_pred             EEEEECCCCHHHHHHHHhccCCE---EEEcccccchHH--------------HHHhCCCCCCeEEEecCCCCCHHHHHHH
Confidence            9998742  23333333332 33   233333211110              01122 2467899999998777766666


Q ss_pred             HHHHhc
Q 027424          215 DKALRT  220 (223)
Q Consensus       215 ~~Al~~  220 (223)
                      -++|+.
T Consensus       370 ~~~l~~  375 (376)
T TIGR01977       370 LEALSE  375 (376)
T ss_pred             HHHHhh
Confidence            666653

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=98.63  E-value=2.2e-07  Score=86.30  Aligned_cols=104  Identities=16%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             CccccCCEEEEecCCCCCCCc------CcccCC-CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC-CC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS------RPLELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~------~pl~~G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~-~~   72 (223)
                      +|+++|++++||++++.....      +.++.| +|+++.|+||++..+.+  ||+++.+++++.+.+...  ..|. ..
T Consensus       230 la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~--y~g~~~~  305 (444)
T TIGR03531       230 ICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKS--YPGRASA  305 (444)
T ss_pred             HHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHh--ccCCCCC
Confidence            589999999999999854321      345565 89999999999985543  788878787777666543  2221 12


Q ss_pred             Ch-HhHHH--HHhcHHHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           73 AP-FDCWI--CLRGVKTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp-~da~l--l~~~l~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      +| .++|.  +..+.+.+...+++..+++..+.+.|++.
T Consensus       306 s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l  344 (444)
T TIGR03531       306 SPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKL  344 (444)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23 45554  33466778888899999999999998864

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=98.63  E-value=1.5e-06  Score=78.38  Aligned_cols=190  Identities=17%  Similarity=0.146  Sum_probs=99.9

Q ss_pred             CccccCCEEEEecCCCCC-CCcCcccCCCcEEEecccccccCCcccceeEEEecChh-HHHHHH---HHH-HhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELY---FLQ-NAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~-~~~~l~---~~~-~~~g~~~sp   74 (223)
                      +||++|++++||++.+.+ ...+..++|+|+++.|.||+++.+|  + |++.+++.. +...+.   ... ...| +.+.
T Consensus       165 la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G--~-g~l~vr~~~~~~p~~~g~~~~~~~~~g-t~~~  240 (382)
T TIGR03403       165 ICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKG--V-GGLYIRKGVELTPLFHGGEHMGGRRSG-TLNV  240 (382)
T ss_pred             HHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCc--e-EEEEECCCCCCCCcccCCCCCCCcccC-CcCh
Confidence            478999999999998765 3356667899999999999876555  3 445455432 111010   000 0122 2333


Q ss_pred             HhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC--HHH
Q 027424           75 FDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LAL  148 (223)
Q Consensus        75 ~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~--~~~  148 (223)
                      ...+-+..+++.+    ....++..+....+.+.|++.|.+ +|..|.  +           ...+++++|.+.+  .+.
T Consensus       241 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~-~~~~~~--~-----------~~~~~~~~~~~~~~~~~~  306 (382)
T TIGR03403       241 PYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDV-FVVGDR--E-----------HRVPNTILISIKGVEGEA  306 (382)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCE-EEECCC--C-----------CCcCCEEEEEeCCCCHHH
Confidence            2233344454433    333355556666777778777876 444331  0           0124566777742  333


Q ss_pred             HHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC----CCeEEEEecC----CCHHHHHHHHHHHHh
Q 027424          149 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGI----EDVNDLISDLDKALR  219 (223)
Q Consensus       149 ~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~----~~liRlsvGl----Ed~~dL~~dl~~Al~  219 (223)
                      ....++.-   .+.++-|..-+    +.  .+.  +..-+...|.+    .+.||+|.+.    ||++.+++-|+++++
T Consensus       307 ~~~~L~~~---gI~v~~g~~c~----~~--~~~--~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~  374 (382)
T TIGR03403       307 MLWDLNKA---GIAASTGSACA----SE--DLE--ANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQ  374 (382)
T ss_pred             HHHhhccC---CEEEEchhccC----CC--CCC--cCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            32223333   33344442110    00  000  01234455553    4789999996    455666666655544

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=98.62  E-value=5.7e-08  Score=94.40  Aligned_cols=101  Identities=14%  Similarity=0.087  Sum_probs=72.7

Q ss_pred             ccccCCEEEEecCCCCCCCc-------CcccCCC---c--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC
Q 027424            2 AHAHGALLLVDNSIMSPVLS-------RPLELGA---D--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG   69 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~-------~pl~~GA---D--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g   69 (223)
                      +|.++  ++||++|++++.+       .|+..||   |  +|+||+||+++  +.+|+.++++++.--.+++.....+++
T Consensus       322 ~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~--alTQaS~LHvkg~vd~~~~n~a~~m~~  397 (714)
T PRK15400        322 LDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHT  397 (714)
T ss_pred             hCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhccc--chhHHhHHHHcCCCCHHHHHHHHHHHc
Confidence            46666  6899999987643       4556788   5  99999999999  678999999876422355666666666


Q ss_pred             CCCChHhHHHHHhcHHHHHHHH---------HHHHhHHHHHHHHHhcCC
Q 027424           70 SGLAPFDCWICLRGVKTMALRV---------EKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl~~R~---------~~~~~na~~la~~L~~~p  109 (223)
                       +.||  +|+++.||+....-|         ++..+.+..+.+.+.+.+
T Consensus       398 -STSP--sY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~  443 (714)
T PRK15400        398 -TTSP--HYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLR  443 (714)
T ss_pred             -CCCc--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence             6799  999999999865443         334555556666565544

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=98.62  E-value=2.4e-06  Score=76.87  Aligned_cols=103  Identities=22%  Similarity=0.120  Sum_probs=64.8

Q ss_pred             CccccCCEEEEecCCCCCCCc---------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~---------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g   69 (223)
                      +|+++|+++|+|++++.+...         -++..+.|+++.|++|++++.    ||+++. ++++.+.+.....  ..+
T Consensus       188 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----gG~~~~-~~~~~~~~~~~~~~~~~~  262 (385)
T TIGR01825       188 LAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV----GGYAAG-HKELIEYLKNRARPFLFS  262 (385)
T ss_pred             HHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC----CCEEec-CHHHHHHHHHhCcccccc
Confidence            478999999999998654221         123457889999999999753    476654 4556666544322  223


Q ss_pred             CCCChHhHHHHHhcHHHHH---HHHHHHHhHHHHHHHHHhcC
Q 027424           70 SGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl~---~R~~~~~~na~~la~~L~~~  108 (223)
                      ....|...+.+..+++.+.   ...++..++...+.+.|++.
T Consensus       263 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  304 (385)
T TIGR01825       263 TAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL  304 (385)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            3345544455556665542   23455666777777878753

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK07568 aspartate aminotransferase; Provisional

Probab=98.61  E-value=9.8e-07  Score=79.88  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=67.0

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccC-C-Cc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLEL-G-AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~-G-AD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|+++..-..     ...+.+ + .+  |++.|+||.++.+|..+|+++ +.++++.+.+...... ..+
T Consensus       190 ~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~-~~~~~~~~~~~~~~~~-~~~  267 (397)
T PRK07568        190 IAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLI-SKNKELIAAAMKLCQA-RLS  267 (397)
T ss_pred             HHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEe-cCCHHHHHHHHHHhhc-cCC
Confidence            36889999999999853211     112222 2 23  899999999998888876654 5555665554433222 123


Q ss_pred             CChHhHHHHHhcHH---H-HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           72 LAPFDCWICLRGVK---T-MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        72 ~sp~da~ll~~~l~---t-l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      .++.....+...++   . +....++..++...+.+.|+.++.+ .+..|
T Consensus       268 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~p  316 (397)
T PRK07568        268 PPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGV-VCEKP  316 (397)
T ss_pred             CCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-eecCC
Confidence            34433333333333   2 2233355677778888999887754 44444

>PRK06207 aspartate aminotransferase; Provisional

Probab=98.60  E-value=2e-06  Score=78.67  Aligned_cols=109  Identities=17%  Similarity=0.082  Sum_probs=68.8

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-cCCCc----EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-ELGAD----IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-~~GAD----ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|++||+|+++.--.+    ..++ .+..|    |++.|++|.++-.|..+|. ++. ++++.+++..........
T Consensus       206 ~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~-ii~-~~~l~~~~~~~~~~~~~~  283 (405)
T PRK06207        206 LARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGV-AFG-SPAIIDRMEKLQAIVSLR  283 (405)
T ss_pred             HHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEE-EEc-CHHHHHHHHHHHhHhccC
Confidence            36789999999999853211    1112 22222    8999999999856777765 444 456777776665544433


Q ss_pred             CChHhHHHHHhcHH----HHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           72 LAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        72 ~sp~da~ll~~~l~----tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      .+......+.+-++    .+..++++..++...+.++|++++.+
T Consensus       284 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  327 (405)
T PRK06207        284 AAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGV  327 (405)
T ss_pred             CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            44433333333332    35666777777788888999887654

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=98.59  E-value=3e-06  Score=77.25  Aligned_cols=180  Identities=19%  Similarity=0.157  Sum_probs=96.9

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH---------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---------------   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~---------------   64 (223)
                      +||++|++++||++.+.+.. .+.-++|+|+++.|.+|.++.++   .|++.++++ +.+.+...               
T Consensus       189 ~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~G~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~  264 (406)
T PRK09295        189 LAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG---IGILYVKEA-LLQEMPPWEGGGSMIATVSLTEG  264 (406)
T ss_pred             HHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCC---cEEEEEchH-hHhhCCCcccCCceeeeeecCCc
Confidence            47889999999999865432 22224689999999999765444   366766653 33322110               


Q ss_pred             -------HHhcCCCCChHhHHHHHhcHHHHHH-----HHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           65 -------QNAEGSGLAPFDCWICLRGVKTMAL-----RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        65 -------~~~~g~~~sp~da~ll~~~l~tl~~-----R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                             .+....+.+....+-+..+++.+..     ..++..+.+..+.+.|++.|.+ +++-|.              
T Consensus       265 ~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~-~~~~~~--------------  329 (406)
T PRK09295        265 TTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDL-TLYGPQ--------------  329 (406)
T ss_pred             cccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCC--------------
Confidence                   0111113333333445555554421     1244445566777778777776 444331              


Q ss_pred             CCCCeeEEEEeC--CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 027424          133 KGAGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  210 (223)
Q Consensus       133 ~g~ggl~sf~~~--~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL  210 (223)
                       ..+++++|.+.  ..+...++++.-++.   ++-|..-+   .+           .....|. ++.||+|.+.-+.++=
T Consensus       330 -~~~~iv~~~~~~~~~~~~~~~L~~~gI~---v~~g~~c~---~~-----------~~~~~~~-~~~iRiS~~~ynt~~d  390 (406)
T PRK09295        330 -NRLGVIAFNLGKHHAYDVGSFLDNYGIA---VRTGHHCA---MP-----------LMAYYNV-PAMCRASLAMYNTHEE  390 (406)
T ss_pred             -CCceEEEEEECCcCHHHHHHHHHhCCeE---Eeccccch---HH-----------HHHHHCC-CCEEEEEccCCCCHHH
Confidence             03579999874  334445555554443   23232100   01           1123443 4789999996544333


Q ss_pred             HHHHHHHH
Q 027424          211 ISDLDKAL  218 (223)
Q Consensus       211 ~~dl~~Al  218 (223)
                      ++.|.+||
T Consensus       391 id~l~~~l  398 (406)
T PRK09295        391 VDRLVAGL  398 (406)
T ss_pred             HHHHHHHH
Confidence            33444444

>PRK09064 5-aminolevulinate synthase; Validated

Probab=98.59  E-value=2.1e-06  Score=78.26  Aligned_cols=174  Identities=17%  Similarity=0.184  Sum_probs=101.4

Q ss_pred             CccccCCEEEEecCCCCCCC-c--------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-S--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~--------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g   69 (223)
                      +|+++|++||||++++.+++ .        ..+....||++.|++|.++..    ||++++ ++++.+.+.....  ...
T Consensus       203 l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~----GG~~~~-~~~~~~~l~~~~~~~~~t  277 (407)
T PRK09064        203 LADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM----GGYIAG-SAALVDAVRSYAPGFIFT  277 (407)
T ss_pred             HHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc----CceEec-CHHHHHHHHHhCcccccc
Confidence            47899999999999864321 1        112224689999999999854    477765 4556555543322  123


Q ss_pred             CCCChHhHHHHHhcHHHHH---HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl~---~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      ...+|..+..++.+++.+.   .+.++..++...+.+.|++.. +. + +|                ..++++.|.+++.
T Consensus       278 ~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~-~-~~----------------~~~~iv~i~~~~~  338 (407)
T PRK09064        278 TSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAG-IP-V-MP----------------NESHIVPVMVGDP  338 (407)
T ss_pred             CcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-CC-C-CC----------------CCCCEEEEEeCCH
Confidence            3456766666677777653   234667788888888887642 21 1 11                1356777877654


Q ss_pred             HHHHHHHhhc----CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHH
Q 027424          147 ALSKHVVETT----KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE----DVNDLISDLDKAL  218 (223)
Q Consensus       147 ~~~~~f~~~l----~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE----d~~dL~~dl~~Al  218 (223)
                      ..+..+.+.|    +++-..         +..|..      +        -..+.+|+|+++.    |.+.+++.|++++
T Consensus       339 ~~~~~l~~~L~~~~gi~v~~---------~~~p~~------~--------~~~~~lRis~~~~~t~edi~~l~~~l~~~~  395 (407)
T PRK09064        339 EKCKKASDMLLEEHGIYVQP---------INYPTV------P--------RGTERLRITPTPFHTDEMIDHLVEALVEVW  395 (407)
T ss_pred             HHHHHHHHHHHHhCCEEEee---------ECCCCC------C--------CCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            3444444433    333111         111110      0        0135699999954    5666677777766


Q ss_pred             hcC
Q 027424          219 RTG  221 (223)
Q Consensus       219 ~~~  221 (223)
                      +..
T Consensus       396 ~~~  398 (407)
T PRK09064        396 ARL  398 (407)
T ss_pred             HHc
Confidence            543

>PRK06348 aspartate aminotransferase; Provisional

Probab=98.58  E-value=4.3e-06  Score=75.73  Aligned_cols=109  Identities=14%  Similarity=0.085  Sum_probs=67.2

Q ss_pred             CccccCCEEEEecCCCCCCCc---Cc---cc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS---RP---LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~---~p---l~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|++||+|+++......   .|   +.  ..-.|++.|+||+++..|..+|.++ + ++.+.+.+.........+.
T Consensus       190 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v-~-~~~~~~~~~~~~~~~~~~~  267 (384)
T PRK06348        190 IAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVI-A-PDYIIETAKIINEGICFSA  267 (384)
T ss_pred             HHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeee-c-CHHHHHHHHHHHHhccCCC
Confidence            378899999999998643211   12   21  1235899999999987888876654 4 4567676666655444344


Q ss_pred             ChHhHHHHHhcHH---HHHHHH-HHHHhHHHHHHHHHhcCCCe
Q 027424           73 APFDCWICLRGVK---TMALRV-EKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        73 sp~da~ll~~~l~---tl~~R~-~~~~~na~~la~~L~~~p~v  111 (223)
                      ++..-..+...++   ....++ +...++...+.+.|+..|.+
T Consensus       268 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~  310 (384)
T PRK06348        268 PTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNL  310 (384)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            5544344443333   323333 34456667788888877653

>PRK06290 aspartate aminotransferase; Provisional

Probab=98.56  E-value=3.3e-06  Score=77.56  Aligned_cols=173  Identities=14%  Similarity=0.154  Sum_probs=100.0

Q ss_pred             CccccCCEEEEecCCCCCCCc-C--cc-c----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-R--PL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~--pl-~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|++||+|++++--..- +  ++ .    ...+|+++|+||.++..|..+|.++ . ++++.+.+...........
T Consensus       207 la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii-~-~~~l~~~l~~~~~~~~~~~  284 (410)
T PRK06290        207 FAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVV-G-NELIVKAFATVKDNNDSGQ  284 (410)
T ss_pred             HHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEE-e-CHHHHHHHHHHHhccccCC
Confidence            478899999999997532110 1  11 1    1346999999999987788876644 4 5566666665544433333


Q ss_pred             ChHhHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE-EeCC---
Q 027424           73 APFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGS---  145 (223)
Q Consensus        73 sp~da~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf-~~~~---  145 (223)
                      +......+.+.++.   +....++..++...+.+.|++++ + .+.-|                 .||++-+ .+.+   
T Consensus       285 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~p-----------------~g~f~l~v~lp~~~~  345 (410)
T PRK06290        285 FIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEVG-F-KAEMP-----------------GGTFYLYVKAPKGTK  345 (410)
T ss_pred             cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhCC-C-eecCC-----------------CeeeEEEEECCCccc
Confidence            32222333444432   23334555677788888998874 3 33322                 3555543 4421   


Q ss_pred             --------HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec-----CCCHHHHHH
Q 027424          146 --------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLIS  212 (223)
Q Consensus       146 --------~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-----lEd~~dL~~  212 (223)
                              .+.++.++++-.+..             .|...               -++.+||++|     -|+.+.+++
T Consensus       346 ~~~~~~~~~~~~~~Ll~~~~v~~-------------~p~~~---------------~~~~lRi~~~~~~~~~~~~~~~~~  397 (410)
T PRK06290        346 SGIKFENAEEFSQYLIKEKLIST-------------VPWDD---------------AGHFLRFSVTFEAKDEEEEDRILE  397 (410)
T ss_pred             cCCCCCCHHHHHHHHHHhCCEEE-------------ECCcc---------------ccCeEEEEEEcccccccchhHHHH
Confidence                    122333334433321             12110               0157999998     456789999


Q ss_pred             HHHHHHhcCC
Q 027424          213 DLDKALRTGP  222 (223)
Q Consensus       213 dl~~Al~~~~  222 (223)
                      -|+++|...+
T Consensus       398 ~l~~~~~~~~  407 (410)
T PRK06290        398 EIKRRLSDVE  407 (410)
T ss_pred             HHHHHHhhcc
Confidence            9999998765

>PRK07337 aminotransferase; Validated

Probab=98.55  E-value=4.4e-06  Score=75.60  Aligned_cols=107  Identities=20%  Similarity=0.133  Sum_probs=65.4

Q ss_pred             CccccCCEEEEecCCCCCC----CcCcccCCCc-EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPV----LSRPLELGAD-IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~----~~~pl~~GAD-ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|+++..-.    ...++.++.+ |++.|+||+++.+|..+|. ++.+ +++.+++.......+...++.
T Consensus       191 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~-~~~~-~~l~~~l~~~~~~~~~~~s~~  268 (388)
T PRK07337        191 AVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGW-LVVP-EALVGTFEKLAQNLFICASAL  268 (388)
T ss_pred             HHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheee-eecC-HHHHHHHHHHHHHhccCCChH
Confidence            3678999999999975321    1123334444 5689999999888888765 4444 566677766655444444544


Q ss_pred             hHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           76 DCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        76 da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ..+.+...++     .+....++..++...+.++|+++.
T Consensus       269 ~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~  307 (388)
T PRK07337        269 AQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLG  307 (388)
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3333333333     232223445566677888898864

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=98.55  E-value=2.9e-06  Score=76.56  Aligned_cols=106  Identities=13%  Similarity=0.027  Sum_probs=65.4

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCccc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|+++.--.       ....+.  ..-.|++.|+||.++-+|..+|.++ . ++++.+++.......+..
T Consensus       192 ~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i-~-~~~l~~~~~~~~~~~~~~  269 (383)
T TIGR03540       192 FAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAV-G-NADLIAGLGKVKTNVDSG  269 (383)
T ss_pred             HHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEe-C-CHHHHHHHHHHHHhcccC
Confidence            4788999999999985211       111121  1124788999999987777776644 4 556777766655444333


Q ss_pred             CChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .++.....+...++.    +....++..++...+.++|+++
T Consensus       270 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  310 (383)
T TIGR03540       270 VFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI  310 (383)
T ss_pred             CChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            444333334444433    3333456677888899999987

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=98.53  E-value=3.3e-07  Score=83.28  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=76.6

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--------HhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--------NAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--------~~~g~~   71 (223)
                      +||++|++++||++++.+. ..+..++|+|+++.|.+|++++..  .+|++++++ ++.+.+....        ..+|.+
T Consensus       183 la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~--~~G~l~~~~-~~i~~~~~~~~~~~~~~~~~~~~~  259 (387)
T PRK09331        183 VAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASA--PSGVLATTE-EYADKVFRTSRKFGVKEVELLGCT  259 (387)
T ss_pred             HHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCC--CEEEEEECH-HHHhhcccccCCCcccceeeecee
Confidence            4789999999999998764 345556899999999999998642  467777765 4444443221        113434


Q ss_pred             CChHhHHHHHhcHHHHH---HHHHHHHhHHHHHHHHHhcCCCee
Q 027424           72 LAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASHPRVK  112 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~---~R~~~~~~na~~la~~L~~~p~v~  112 (223)
                      +.+-.++.++.+++.+.   .|++++.++++.+.+.|++.|+++
T Consensus       260 ~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~  303 (387)
T PRK09331        260 LRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFK  303 (387)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            43333666677776543   455778889999999999998764

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=98.52  E-value=1.3e-06  Score=79.34  Aligned_cols=171  Identities=16%  Similarity=0.158  Sum_probs=100.9

Q ss_pred             CccccCCEEEEecCCCCCCCcCc-------ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p-------l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++. ++...+       ....+|+++.|  |.++|....+ |++++++ ++.+.+...........+
T Consensus       216 l~~~~gi~lI~DEv~~-g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~i-g~v~~~~-~~~~~l~~~~~~~t~~~~  290 (401)
T PRK00854        216 LCTANNVTLILDEIQT-GLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPV-SAVLSNS-EVLGVLKPGQHGSTFGGN  290 (401)
T ss_pred             HHHHcCCEEEEechhh-CCCCCchHhHHhhcCCCCCEEEec--ccccCCccCe-EEEEEcH-HHHhcccCCCCCCCCCcC
Confidence            4789999999999984 444332       22357998875  9999754344 5565554 454444321111111247


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHH
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSK  150 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~  150 (223)
                      |..++..+..|+.+..  ..++..+++..+.+.|++.+.. .+               ....|.|.++.|++ ++.....
T Consensus       291 ~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~-~~---------------~~~~g~g~~~~i~~~~~~~~~~  354 (401)
T PRK00854        291 PLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRSN-IV---------------REVRGRGLMLAVELEPEAGGAR  354 (401)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhccC-ce---------------EEEeccceEEEEEEecCchhHH
Confidence            8888889999988754  3455566666666767654310 01               01245789999987 4333445


Q ss_pred             HHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe----cCCCHHHHHHHHHHHHh
Q 027424          151 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALR  219 (223)
Q Consensus       151 ~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv----GlEd~~dL~~dl~~Al~  219 (223)
                      .|.+.|.-  .++-.        .+                 ..++.||++.    --|+.+.+++.|++++.
T Consensus       355 ~~~~~L~~--~GV~v--------~~-----------------~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        355 QYCEALKE--RGLLA--------KD-----------------THDHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             HHHHHHHH--CCeEE--------ec-----------------CCCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence            66655531  11111        00                 0236799995    44567777777777664

>TIGR01814 kynureninase kynureninase

Probab=98.52  E-value=3.5e-06  Score=76.93  Aligned_cols=42  Identities=24%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGH   42 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~   42 (223)
                      +||++|++++||.+.+.+. .++.-++|+|+++-|.+|++.|.
T Consensus       196 ~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~  238 (406)
T TIGR01814       196 AAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAG  238 (406)
T ss_pred             HHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCC
Confidence            4789999999999987664 23434679999999999998643

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK06225 aspartate aminotransferase; Provisional

Probab=98.51  E-value=3.3e-06  Score=76.25  Aligned_cols=182  Identities=16%  Similarity=0.118  Sum_probs=95.1

Q ss_pred             CccccCCEEEEecCCCCCCC-cCc---ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHh
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD   76 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~p---l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~d   76 (223)
                      +|+++|+++|+|+++..... ..+   +.....+++.|+||+++..|-.+|+ ++++ +.+.+.++..... ....+...
T Consensus       185 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~-i~~~-~~l~~~~~~~~~~-~~~~~~~~  261 (380)
T PRK06225        185 IARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGA-VVAT-PDLIEVVKSIVIN-DLGTNVIA  261 (380)
T ss_pred             HHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEE-EecC-HHHHHHHHHHHhc-ccCCCHHH
Confidence            37889999999998631000 011   1123468899999999656655554 5454 5566666544321 12234433


Q ss_pred             HHHHHhcHH---HHHHHHHH-HHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC-HHHHHH
Q 027424           77 CWICLRGVK---TMALRVEK-QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKH  151 (223)
Q Consensus        77 a~ll~~~l~---tl~~R~~~-~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~-~~~~~~  151 (223)
                      .......++   .+..++++ ..++...+.+.|+..|.+....+|                ..|+++.+++.. .....+
T Consensus       262 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~  325 (380)
T PRK06225        262 QEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYP----------------SHGNMMVIDISEAGIDPED  325 (380)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCC----------------CCCeEEEEEcccccCCHHH
Confidence            333333332   33344433 345556677888876654221233                146677777621 112233


Q ss_pred             HHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHhcC
Q 027424          152 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  221 (223)
Q Consensus       152 f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl--Ed~~dL~~dl~~Al~~~  221 (223)
                      |.+.+.--.+.+.-|...    .+              .  ..++.+|+|++.  |+.+.+++.|.++++++
T Consensus       326 l~~~l~~~gi~v~~g~~~----~~--------------~--~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~  377 (380)
T PRK06225        326 LVEYLLERKIFVRQGTYT----SK--------------R--FGDRYIRVSFSIPREQVEVFCEEFPDVVETL  377 (380)
T ss_pred             HHHHHHHCCEEEcCCccc----Cc--------------C--CCCceEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence            433332111111111100    00              0  125689999998  56788888888887643

>PRK06107 aspartate aminotransferase; Provisional

Probab=98.50  E-value=5.7e-06  Score=75.45  Aligned_cols=108  Identities=15%  Similarity=0.058  Sum_probs=67.2

Q ss_pred             cccc-CCEEEEecCCCCCCC----cCc-ccC-----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            2 AHAH-GALLLVDNSIMSPVL----SRP-LEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         2 a~~~-g~~lvVDnT~~s~~~----~~p-l~~-----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      |+++ |+++|+|++++.-.+    ..+ ...     .--|++.|+||.++-.|..+|. ++. ++++.+.+.........
T Consensus       195 a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~-~~~-~~~~~~~~~~~~~~~~~  272 (402)
T PRK06107        195 LLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGY-AAG-PADLIAAINKLQSQSSS  272 (402)
T ss_pred             HHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceee-eec-CHHHHHHHHHHHHhccc
Confidence            6787 999999999842111    011 111     1248899999999767777766 444 45677777766655444


Q ss_pred             CCChHhHHHHHhcHH----HHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           71 GLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        71 ~~sp~da~ll~~~l~----tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ..++...+.+.+.|+    .+....++..++...+.+.|+.++.+
T Consensus       273 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~  317 (402)
T PRK06107        273 CPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGL  317 (402)
T ss_pred             CCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            556554454444442    23333455667777788899887653

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=98.50  E-value=5e-06  Score=75.19  Aligned_cols=56  Identities=34%  Similarity=0.409  Sum_probs=40.0

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l   61 (223)
                      +||++|++++||++...+.. .+..++|+|+++.|.+|+++ ..   .|++.+++ ++.+.+
T Consensus       181 ~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~---~G~l~~~~-~~~~~l  237 (397)
T TIGR01976       181 LVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFG-PH---MGILWGRP-ELLMNL  237 (397)
T ss_pred             HHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcC-Cc---eEEEEEcH-HHHhhC
Confidence            47899999999999754432 34445799999999999985 32   57776665 444433

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=98.50  E-value=7.6e-06  Score=73.94  Aligned_cols=106  Identities=12%  Similarity=0.018  Sum_probs=64.6

Q ss_pred             CccccCCEEEEecCCCCCCC----cCc---cc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRP---LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~p---l~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|++||+|+++....+    ..+   +.  .+-.|++.|+||.++-+|..+|.++ + ++++.+.+.........+
T Consensus       194 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i-~-~~~l~~~~~~~~~~~~~~  271 (385)
T PRK09276        194 FAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAV-G-NADLIAGLGKVKSNVDSG  271 (385)
T ss_pred             HHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeee-C-CHHHHHHHHHHHhhccCC
Confidence            36889999999999853211    111   11  1235889999999988888887654 4 456767766655444433


Q ss_pred             CChHhHHHHHhcHH---HHHHHH-HHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVK---TMALRV-EKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~---tl~~R~-~~~~~na~~la~~L~~~  108 (223)
                      .++.....+...++   ....++ ++..++...+.+.|+++
T Consensus       272 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  312 (385)
T PRK09276        272 VFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL  312 (385)
T ss_pred             CCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44433333334443   222333 44566677788888876

>PRK08960 hypothetical protein; Provisional

Probab=98.49  E-value=8e-06  Score=73.95  Aligned_cols=107  Identities=16%  Similarity=0.091  Sum_probs=65.4

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccCCCc-EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLELGAD-IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~GAD-ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|+++..-..    ...+....+ |++.|+||.++..|..+|.++ . ++++.+.+...........+..
T Consensus       193 ~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~-~-~~~~~~~~~~~~~~~~~~~s~~  270 (387)
T PRK08960        193 ALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLV-A-PPAAVPELEKLAQNLYISASTP  270 (387)
T ss_pred             HHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEE-c-CHHHHHHHHHHHhhhccCCCHH
Confidence            37889999999999743211    111222223 788999999988888876644 4 4566666665554444344554


Q ss_pred             hHHHHHhcHH----H-HHHHHHHHHhHHHHHHHHHhcCC
Q 027424           76 DCWICLRGVK----T-MALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        76 da~ll~~~l~----t-l~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ....+...++    . +....++..++...+.+.|+.++
T Consensus       271 ~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~  309 (387)
T PRK08960        271 AQHAALACFEPETLAILEARRAEFARRRDFLLPALRELG  309 (387)
T ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3333333332    2 33333555667778889998875

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=98.48  E-value=7.5e-06  Score=73.44  Aligned_cols=107  Identities=16%  Similarity=0.110  Sum_probs=62.7

Q ss_pred             CccccCCEEEEecCCCCCC-CcCc---cc---CCC----cEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRP---LE---LGA----DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~p---l~---~GA----Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g   69 (223)
                      +|+++|+++|+|++++.-. ..++   +.   .+.    -|++.|+||.++..|..+|. ++ .++++.+++...+...+
T Consensus       170 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~-~i-~~~~~~~~~~~~~~~~~  247 (357)
T TIGR03539       170 WARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGF-VA-GDPALVAELLTVRKHAG  247 (357)
T ss_pred             HHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEE-Ee-cCHHHHHHHHHHHhhcc
Confidence            3788999999999985211 0011   11   122    28999999998766766655 54 45567676666555444


Q ss_pred             CCCChHhHHHHHhcHHH--HHHHH-HHHHhHHHHHHHHHhcCC
Q 027424           70 SGLAPFDCWICLRGVKT--MALRV-EKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~t--l~~R~-~~~~~na~~la~~L~~~p  109 (223)
                      ...++.....+...|+.  ...++ ++..++...+.+.|+++.
T Consensus       248 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~g  290 (357)
T TIGR03539       248 LMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKAG  290 (357)
T ss_pred             cCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44455433444444432  22222 444466667778888763

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07681 aspartate aminotransferase; Provisional

Probab=98.48  E-value=4.4e-06  Score=76.05  Aligned_cols=113  Identities=9%  Similarity=0.053  Sum_probs=70.0

Q ss_pred             CccccCCEEEEecCCCCCCC----cCc---cc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRP---LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~p---l~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|++||+|++++--..    ..+   +.  ..-.|++.|+||.++-+|..+|.++ . ++++.+++.........+
T Consensus       194 ~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i-~-~~~l~~~~~~~~~~~~~~  271 (399)
T PRK07681        194 FAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMI-G-NEEIVRALTQFKSNTDYG  271 (399)
T ss_pred             HHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEe-c-CHHHHHHHHHHHhhcccC
Confidence            37889999999999852211    111   11  1134889999999987888877654 4 556777776655544444


Q ss_pred             CChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           72 LAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        72 ~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      .+....+.+...++.    +..+.++..++...+.+.|+++. + ++..|
T Consensus       272 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~p  319 (399)
T PRK07681        272 VFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTFG-W-NVDKP  319 (399)
T ss_pred             CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC-C-cccCC
Confidence            555444444444433    33334555677778889998873 4 44444

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.47  E-value=1.9e-07  Score=84.68  Aligned_cols=85  Identities=25%  Similarity=0.269  Sum_probs=65.7

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +||++|+|++||.+-+.++     .+..++.|||+|+.|..|.++|+   ++|.++++ +++.++++...-..+.-.++.
T Consensus       182 ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGP---qaGii~Gk-KelI~~lq~~~l~Ralrv~K~  257 (395)
T COG1921         182 IAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGP---QAGIIVGK-KELIEKLQSHPLKRALRVDKE  257 (395)
T ss_pred             HHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCC---ccceEech-HHHHHHHHhhhhhhhhhcCcH
Confidence            5899999999999987742     35567899999999999999998   59988765 567777766544444456776


Q ss_pred             hHHHHHhcHHHHHH
Q 027424           76 DCWICLRGVKTMAL   89 (223)
Q Consensus        76 da~ll~~~l~tl~~   89 (223)
                      .-..+.++|+.+..
T Consensus       258 tla~l~~aLe~y~~  271 (395)
T COG1921         258 TLAALEAALELYLQ  271 (395)
T ss_pred             hHHHHHHHHHHHcC
Confidence            67778888887643

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=98.47  E-value=1.1e-05  Score=73.59  Aligned_cols=115  Identities=13%  Similarity=0.022  Sum_probs=67.9

Q ss_pred             CccccCCEEEEecCCCCCCCc----Cc-ccCCC---cEEEecccccccCCcccceeEEEecChh-----HHHHHHHHHHh
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RP-LELGA---DIVMHSATKFIAGHSDVMAGVLAVKGER-----LAKELYFLQNA   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~p-l~~GA---Divv~S~tK~l~G~~d~~~G~v~~~~~~-----~~~~l~~~~~~   67 (223)
                      +|+++|+++|+|+++..-...    .+ ..+-.   =|++.|+||.++..|..+|.++..+++.     +.+.+......
T Consensus       197 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~  276 (403)
T TIGR01265       197 VARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQR  276 (403)
T ss_pred             HHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhh
Confidence            378899999999997532211    11 11212   2788999999988888988766544422     22223322221


Q ss_pred             cCCCCChHhHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           68 EGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        68 ~g~~~sp~da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                       ....++.....+...++     .+....++..++...+.+.|+.+|.+ ++..|
T Consensus       277 -~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~p  329 (403)
T TIGR01265       277 -ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGL-VCPKP  329 (403)
T ss_pred             -hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCc-eecCC
Confidence             11234444444444443     23444567777888899999988765 44444

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=98.46  E-value=7.6e-06  Score=74.09  Aligned_cols=107  Identities=15%  Similarity=0.099  Sum_probs=78.2

Q ss_pred             CccccCCEEEEecCCCCC--CCcCcccCCCcEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSP--VLSRPLELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~--~~~~pl~~GADivv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|++||+|++++-.  +.-+|+.-..|+.+-|.+  |.++. +  .||+++.+++++.++++.++..         
T Consensus       141 la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~-g--~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~  217 (375)
T PRK11706        141 LAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTA-G--EGGALLINDPALIERAEIIREKGTNRSQFFR  217 (375)
T ss_pred             HHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCccccc-c--CCeEEEECCHHHHHHHHHHHHcCCCcchhhc
Confidence            478999999999997543  344455444799998876  99963 2  3677778888887776655431         


Q ss_pred             ----------cCCC--CChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCC
Q 027424           68 ----------EGSG--LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        68 ----------~g~~--~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~  110 (223)
                                .|..  ++...+.++...++.+....++..+++..+.+.|++.+.
T Consensus       218 ~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~~  272 (375)
T PRK11706        218 GQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLALWQRYYDALAPLAE  272 (375)
T ss_pred             cCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                      1221  345667777888888888889999999999999988763

>PRK14012 cysteine desulfurase; Provisional

Probab=98.46  E-value=4.4e-06  Score=76.15  Aligned_cols=190  Identities=18%  Similarity=0.156  Sum_probs=98.2

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-H------Hh-cCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-Q------NA-EGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-~------~~-~g~~   71 (223)
                      +||++|++++||.+.+.+.. .+.-+.++|+++.|.+|+++..  ..|+++ ++++... ++... .      .. .| +
T Consensus       169 la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~--g~G~l~-~~~~~~~-~~~~~~~g~~~~~~~~~g-t  243 (404)
T PRK14012        169 ICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPK--GIGALY-VRRKPRV-RLEAQMHGGGHERGMRSG-T  243 (404)
T ss_pred             HHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCC--ceEEEE-EecCCCC-CCCceecCCCccCCccCC-C
Confidence            47899999999999876543 3444568999999999987533  245555 4443221 11110 0      00 11 1


Q ss_pred             CChHhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHH
Q 027424           72 LAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  147 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~  147 (223)
                      .+.....-+-.+++.+    ..+.++..+.+..+.+.|++.|.+. +..+ .   +     .+  ......++|.+.+.+
T Consensus       244 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~-~~~~-~---~-----~~--~~~~~~~~~~~~~~~  311 (404)
T PRK14012        244 LPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDIEEVY-LNGD-L---E-----QR--VPGNLNVSFNYVEGE  311 (404)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCC-c---c-----cc--CCCEEEEEEeCcCHH
Confidence            1222222222344333    2334666677777777887788763 3211 1   0     00  112234666653322


Q ss_pred             HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCC----CCCeEEEEecC----CCHHHHHHHHHHHHh
Q 027424          148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL----TEDLVRISVGI----EDVNDLISDLDKALR  219 (223)
Q Consensus       148 ~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi----~~~liRlsvGl----Ed~~dL~~dl~~Al~  219 (223)
                         .++..++  .++++-|..    +.|.   |..- ......+|+    .++.||+|++.    ||++.+++-|++.++
T Consensus       312 ---~~~~~l~--~~~i~~g~~----~~~~---~~~~-~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~  378 (404)
T PRK14012        312 ---SLIMALK--DLAVSSGSA----CTSA---SLEP-SYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIG  378 (404)
T ss_pred             ---HHHHhCC--CeEEEchhh----hCCC---CCCC-CHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence               3444454  233333311    1111   1000 001123454    35799999997    677778887777665


Q ss_pred             c
Q 027424          220 T  220 (223)
Q Consensus       220 ~  220 (223)
                      .
T Consensus       379 ~  379 (404)
T PRK14012        379 K  379 (404)
T ss_pred             H
Confidence            3

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=98.45  E-value=4.6e-06  Score=74.27  Aligned_cols=105  Identities=19%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             CccccCCEEEEecCCCCC-CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH-------------HHH
Q 027424            1 MAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-------------LQN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~-------------~~~   66 (223)
                      +||++|+++++|++++-+ ...++.++|+|+++.|++|+++++.  -.|++..++ ++.+.+..             ...
T Consensus       149 ~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~--g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  225 (356)
T cd06451         149 LAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPP--GLGPIAFSE-RALERIKKKTKPKGFYFDLLLLLK  225 (356)
T ss_pred             HHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCC--CcceeEECH-HHHHHHHhcCCCCceeecHHHHHh
Confidence            478999999999986432 2245556789999999999999763  247776654 45444432             000


Q ss_pred             ------hcCCCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcC
Q 027424           67 ------AEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        67 ------~~g~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~  108 (223)
                            ..+.+.++...+-+..+++.+     ....++..+++..+.+.|++.
T Consensus       226 ~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  278 (356)
T cd06451         226 YWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL  278 (356)
T ss_pred             hhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence                  111223333333344555543     233466667788888888765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=98.45  E-value=2.5e-06  Score=75.78  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=70.6

Q ss_pred             cCCEEEEecCCCCCCCcC--ccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHH
Q 027424            5 HGALLLVDNSIMSPVLSR--PLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW   78 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~~--pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~   78 (223)
                      +|+++++|++++ ++...  +..    ..-+|++.|++|.++..+-.+ |+++. ++++.++++......+  .++....
T Consensus       173 ~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~-~~~~~~~~~~~~~~~~--~~~~~~~  247 (346)
T TIGR01141       173 EDALVVVDEAYG-EFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRI-GYAIA-NAEIIDALNKVRAPFN--LSRLAQA  247 (346)
T ss_pred             CCcEEEEECchh-hhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhc-eeeec-CHHHHHHHHhccCCCC--CCHHHHH
Confidence            499999999986 22221  211    123488899999997665554 55655 4566666654433222  3443333


Q ss_pred             HHHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           79 ICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        79 ll~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      .+...++.   +..+.++..++...+.+.|+++|++. | +|.                .|..+.|++.
T Consensus       248 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~-~~~----------------~g~~~~~~~~  298 (346)
T TIGR01141       248 AAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLE-V-YPS----------------DANFVLIRFP  298 (346)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE-E-CCC----------------cCCEEEEecC
Confidence            33333332   34445777888889999999887764 3 341                3567888875

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK02948 cysteine desulfurase; Provisional

Probab=98.44  E-value=5.8e-06  Score=74.53  Aligned_cols=193  Identities=15%  Similarity=0.135  Sum_probs=99.8

Q ss_pred             CccccCCEEEEecCCCCC-CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH----HHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF----LQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~----~~~~~g~~~sp~   75 (223)
                      +||++|++++||.+.+-+ ...+.-++|+|+++.|++|+++.+|   .|.+..+++..+..+..    .......+.++.
T Consensus       163 l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  239 (381)
T PRK02948        163 LLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKG---VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVP  239 (381)
T ss_pred             HHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCc---EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHH
Confidence            478899999999875432 2334446799999999999987555   35565665421111110    000111233343


Q ss_pred             hHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHH
Q 027424           76 DCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH  151 (223)
Q Consensus        76 da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~  151 (223)
                      ....+..+++.+    ..+.++..++...+.+.|++.+.  .|..++   +++        .....+++|.+.+.+ ...
T Consensus       240 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~v~~~~---~~~--------~~~~~i~~~~~~~~~-~~~  305 (381)
T PRK02948        240 GIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPL--PIEVEG---HST--------SCLPHIIGVTIKGIE-GQY  305 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CEEEeC---CCc--------cCcCCEEEEEeCCCC-HHH
Confidence            344444555443    44456777778888888887752  232211   111        113567888774321 233


Q ss_pred             HHhhcCcceeccccCCCC-CCCCCCccccCCCCCHHHHHhcCC----CCCeEEEEecCC----CHHHHHHHHHHHHh
Q 027424          152 VVETTKYFSITVSFGSVK-SLISMPCFMSHASIPVEVRQARGL----TEDLVRISVGIE----DVNDLISDLDKALR  219 (223)
Q Consensus       152 f~~~l~l~~~~~s~G~~~-sli~~p~~~~h~~~~~~~~~~~gi----~~~liRlsvGlE----d~~dL~~dl~~Al~  219 (223)
                      +...|.-..+.++-|..- +.+..|.         ...+.+|.    ..+.||+|+|..    |.+.+++-|++.++
T Consensus       306 ~~~~l~~~gI~v~~g~~c~~~~~~p~---------~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~  373 (381)
T PRK02948        306 TMLECNRRGIAISTGSACQVGKQEPS---------KTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGN  373 (381)
T ss_pred             HHHhcccCCEEEEchHhcCCCCCCCC---------HHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            333333223333333211 1111110         11123332    247899999944    55666666665554

>PRK07682 hypothetical protein; Validated

Probab=98.43  E-value=5.6e-06  Score=74.60  Aligned_cols=106  Identities=7%  Similarity=0.045  Sum_probs=66.2

Q ss_pred             CccccCCEEEEecCCCCCCCc------Cccc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS------RPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~------~pl~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++++++|+|+++.....-      ..+.  ..-.+++.|++|.++-.|..+|.++ . ++++.+++.........+.
T Consensus       182 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~-~-~~~~i~~l~~~~~~~~~~~  259 (378)
T PRK07682        182 IVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIA-A-PVYFSEAMLKIHQYSMMCA  259 (378)
T ss_pred             HHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhh-c-CHHHHHHHHHHHHhhccCC
Confidence            378899999999997533211      1111  1235899999999976677776544 4 4567777665544433344


Q ss_pred             ChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ++...+.+.+.|+.    +....++..++...+.+.|+++
T Consensus       260 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  299 (378)
T PRK07682        260 PTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI  299 (378)
T ss_pred             CHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            55444444444533    3333455677778888999886

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=98.40  E-value=3.6e-05  Score=69.09  Aligned_cols=106  Identities=15%  Similarity=0.071  Sum_probs=65.5

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc---CC----CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE---LG----ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~---~G----ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g   69 (223)
                      +|+++|++||+|++++.-..    ...+.   .|    --|++.|+||.++..|..+|. ++. ++++.+.+.......+
T Consensus       176 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~-i~~-~~~~~~~~~~~~~~~~  253 (364)
T PRK07865        176 WARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGF-VAG-DPALVAELLEVRKHAG  253 (364)
T ss_pred             HHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEE-Eec-CHHHHHHHHHHHHhcC
Confidence            36889999999999863211    11111   11    239999999999877777665 544 5667777766655555


Q ss_pred             CCCChHhHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcC
Q 027424           70 SGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ...++.....+.+.++.   +....++..++...+.+.|+.+
T Consensus       254 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  295 (364)
T PRK07865        254 MMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA  295 (364)
T ss_pred             CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45555444444444432   3333355566677788888875

>PRK07550 hypothetical protein; Provisional

Probab=98.40  E-value=8.1e-06  Score=73.82  Aligned_cols=109  Identities=12%  Similarity=0.073  Sum_probs=66.5

Q ss_pred             CccccCCEEEEecCCCCCCC--cCc---cc---CCC-cEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL--SRP---LE---LGA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~--~~p---l~---~GA-Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++....  ..+   +.   .+. .+++.|++|+++..+..+| +++++ +++.+.+.......+..
T Consensus       191 ~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG-~i~~~-~~~~~~~~~~~~~~~~~  268 (386)
T PRK07550        191 LARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVG-AVVAS-PARIAEIEKFMDTVAIC  268 (386)
T ss_pred             HHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceE-eeecC-HHHHHHHHHHHhhcccC
Confidence            47889999999999753211  111   11   111 3779999999975565554 55554 55666666655544444


Q ss_pred             CChHhHHHHHhcHHH---HHHHH-HHHHhHHHHHHHHHhcCCCe
Q 027424           72 LAPFDCWICLRGVKT---MALRV-EKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        72 ~sp~da~ll~~~l~t---l~~R~-~~~~~na~~la~~L~~~p~v  111 (223)
                      .++...+.+.+.++.   ...++ ++..++...+.++|++++.+
T Consensus       269 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  312 (386)
T PRK07550        269 APRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGW  312 (386)
T ss_pred             CCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            555545555555443   33333 45566777888999887543

>PRK09148 aminotransferase; Validated

Probab=98.40  E-value=2.1e-05  Score=71.94  Aligned_cols=107  Identities=15%  Similarity=0.058  Sum_probs=64.1

Q ss_pred             CccccCCEEEEecCCCCCCC----c-CcccC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----S-RPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~-~pl~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|++||+|++++--.+    + ....+    +-.|++.|+||.++-+|..+|.++ . ++++.+.+...+.....+
T Consensus       193 ~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v-~-~~~~i~~l~~~~~~~~~~  270 (405)
T PRK09148        193 FAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAV-G-NERLIAALTRVKSYLDYG  270 (405)
T ss_pred             HHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeee-C-CHHHHHHHHHHHHHhccC
Confidence            47889999999999753111    1 11111    123678999999988888876654 4 556777776665544333


Q ss_pred             CChHhHHHHHhcHH---HH-HHHHHHHHhHHHHHHHHHhcCC
Q 027424           72 LAPFDCWICLRGVK---TM-ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        72 ~sp~da~ll~~~l~---tl-~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .++..-..+...|+   .. ....++..++...+.+.|+.+.
T Consensus       271 ~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  312 (405)
T PRK09148        271 AFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAG  312 (405)
T ss_pred             CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34432233333332   22 2333555677777888888763

>PRK07777 aminotransferase; Validated

Probab=98.40  E-value=1.9e-05  Score=71.45  Aligned_cols=106  Identities=15%  Similarity=0.015  Sum_probs=62.6

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc-----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~-----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|+++..-.+    ..|+.     .+.+|++.|+||+++.+|..+|. ++. ++++.+.+..........
T Consensus       187 ~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~-~~~-~~~l~~~~~~~~~~~~~~  264 (387)
T PRK07777        187 LAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGW-ACG-PAPLIAAVRAAKQYLTYV  264 (387)
T ss_pred             HHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEE-Eec-CHHHHHHHHHHHhhcccC
Confidence            46889999999999742111    11221     24679999999999877877765 444 445666665544433222


Q ss_pred             CChHhHHHHHhcHH---HH-HHHHHHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVK---TM-ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~---tl-~~R~~~~~~na~~la~~L~~~  108 (223)
                      .++.....+...++   .. ....+...++...+.++|+++
T Consensus       265 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  305 (387)
T PRK07777        265 GGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA  305 (387)
T ss_pred             CCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            22222222222232   22 222356677777888888875

>PRK08361 aspartate aminotransferase; Provisional

Probab=98.39  E-value=1.1e-05  Score=73.12  Aligned_cols=114  Identities=16%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             CccccCCEEEEecCCCCCCCc----Cc---ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~p---l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++++++|+|++++.....    .+   +...-++++.|++|.++.+|..+|.++ + ++++.+.+...........+
T Consensus       194 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~-~-~~~~~~~~~~~~~~~~~~~~  271 (391)
T PRK08361        194 IAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVI-A-PEQVIKDMIKLHAYIIGNVA  271 (391)
T ss_pred             HHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhc-c-CHHHHHHHHHHHhhhccCCC
Confidence            368899999999997532111    11   112346899999999987777776544 4 44566666554443333344


Q ss_pred             hHhHHHHHhcHHH------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           74 PFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        74 p~da~ll~~~l~t------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      +.....+.+.++.      +....++..++...+.++|++.|.+ ++..|
T Consensus       272 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~p  320 (391)
T PRK08361        272 SFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHI-KVFEP  320 (391)
T ss_pred             hHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCC-eecCC
Confidence            4333333333322      2223344466666788899887764 44434

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=98.39  E-value=9.5e-06  Score=71.71  Aligned_cols=106  Identities=19%  Similarity=0.231  Sum_probs=64.1

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH------------HH--
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------------LQ--   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~------------~~--   65 (223)
                      +|+++|++++||++++-+. ..+.-++++|+++.|++|+++|..-  .|+++.++ ++.+.+..            +.  
T Consensus       150 l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  226 (355)
T TIGR03301       150 VARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPG--FGFVIARR-DLLEASAGNARSLYLDLYDQWAYM  226 (355)
T ss_pred             HHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCc--eeEEEECH-HHHHHhhCCCCCceeeHHHHHHHh
Confidence            4789999999999754322 2333456899999999999865421  36776665 44444330            00  


Q ss_pred             HhcC---CCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCC
Q 027424           66 NAEG---SGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        66 ~~~g---~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ...+   .+.++...+.+..+++.+      ..+.++..++...+.+.|++.+
T Consensus       227 ~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g  279 (355)
T TIGR03301       227 EKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALG  279 (355)
T ss_pred             hhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcC
Confidence            0001   123433334444555543      4456677788888888888763

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.39  E-value=2e-05  Score=72.22  Aligned_cols=169  Identities=20%  Similarity=0.196  Sum_probs=103.6

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCcccCCC--c--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLELGA--D--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~~GA--D--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|++||++||.|+.+..-.     ...+++..-  |  |+++|+||+++-.|-.+|+++ ++++++.+.+..++.....+
T Consensus       191 ~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v-~~~~~l~~~~~~~~~~~~~~  269 (393)
T COG0436         191 LAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVV-GPPEELIAALRKLKSYLTSC  269 (393)
T ss_pred             HHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEee-cChHHHHHHHHHHHHhcccC
Confidence            4789999999999974322     122333322  3  899999999998888887755 55567777666555544433


Q ss_pred             CChHhHHHHHhcHH-----HHHHHH-HHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE-e-
Q 027424           72 LAPFDCWICLRGVK-----TMALRV-EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-T-  143 (223)
Q Consensus        72 ~sp~da~ll~~~l~-----tl~~R~-~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~-~-  143 (223)
                      .+...=+.....|+     ....++ ++..++...+.+.|++.+.+..+.+|                 -|++..|. + 
T Consensus       270 ~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p-----------------~Ga~Y~~~~i~  332 (393)
T COG0436         270 APTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPP-----------------EGAFYLFPKIP  332 (393)
T ss_pred             CCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCC-----------------CeeEEEEeecC
Confidence            33322222233333     233444 67788888999999999887555556                 46666664 3 


Q ss_pred             ---CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcC--CCCCeEEEEecCCCHHHHHHH
Q 027424          144 ---GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG--LTEDLVRISVGIEDVNDLISD  213 (223)
Q Consensus       144 ---~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g--i~~~liRlsvGlEd~~dL~~d  213 (223)
                         ++.+.+.++++.-++.-             .|.+            ..|  ...+.||||.+..+ ++|.+-
T Consensus       333 ~~~d~~~f~~~Ll~~~gV~v-------------~PG~------------~Fg~~~g~~~vRis~~~~~-~~l~~a  381 (393)
T COG0436         333 ELLDSEEFAKKLLEEAGVAV-------------VPGS------------GFGEPPGEGYVRLSLATSE-ETLEEA  381 (393)
T ss_pred             CCCCHHHHHHHHHHhCCEEE-------------eccc------------ccCCCCCCCeEEEEEecCH-HHHHHH
Confidence               23455666666665431             1221            111  14689999999887 544443

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=98.39  E-value=3e-06  Score=74.95  Aligned_cols=106  Identities=18%  Similarity=0.197  Sum_probs=67.9

Q ss_pred             CccccCCEEEEecCCCCCCCcC----c--cc-CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----P--LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----p--l~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|++++||.+++.+....    +  .. .++|.++.|++|+++++.  -+|++..+                    
T Consensus       173 ~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~--g~g~~~~~--------------------  230 (345)
T cd06450         173 LAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL--GCSAVLVR--------------------  230 (345)
T ss_pred             HHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCc--chHHHHHH--------------------
Confidence            4789999999999986654211    1  00 278999999999987542  23433332                    


Q ss_pred             hHhHHHHHhc--HHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           74 PFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        74 p~da~ll~~~--l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      ....|..++.  -+.+..++++..+.++.+.+.|++.|.+ .+..|     |           .+++++|.+.+
T Consensus       231 ~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~-----~-----------~~~iv~f~~~~  287 (345)
T cd06450         231 ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGF-ELLGE-----P-----------NLSLVCFRLKP  287 (345)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCe-EEecC-----C-----------ceeEEEEEECC
Confidence            1111222222  2345677788889999999999998876 33332     1           36799998844

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=98.38  E-value=8.1e-06  Score=73.08  Aligned_cols=106  Identities=19%  Similarity=0.187  Sum_probs=64.1

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH---------------H
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---------------L   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~---------------~   64 (223)
                      +||++|++++||.+.+-+. ..+.-++|+|+++.|.+|+++|+.-  .|++..+++ ..+++..               .
T Consensus       154 l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  230 (363)
T TIGR02326       154 LAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPG--FGFVIARQA-ELAACKGNARSLSLDLYDQWRCM  230 (363)
T ss_pred             HHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCCc--ceEEEECHH-HHHHhhcCCCceeecHHHHHHHH
Confidence            4789999999999864332 2233457899999999999976532  377767654 3333210               0


Q ss_pred             HHhcCC---CCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCC
Q 027424           65 QNAEGS---GLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        65 ~~~~g~---~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ....|.   +.++...+-+..+++.+      ..+.++..+++..+.+.|++..
T Consensus       231 ~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g  284 (363)
T TIGR02326       231 EDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALG  284 (363)
T ss_pred             hccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            000010   22333334444455443      3455777888888888888763

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK12414 putative aminotransferase; Provisional

Probab=98.38  E-value=2.5e-05  Score=70.80  Aligned_cols=107  Identities=13%  Similarity=0.009  Sum_probs=63.8

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc-C-C-C--cEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE-L-G-A--DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~-~-G-A--Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|+++..-.+    ..|+. + + .  -|++.|+||.++-.|..+|.++ . ++++.+.+.........+
T Consensus       190 ~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v-~-~~~l~~~l~~~~~~~~~~  267 (384)
T PRK12414        190 LTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCL-A-PAELMDEIRKVHQFMVFS  267 (384)
T ss_pred             HHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEe-c-CHHHHHHHHHHHhheecC
Confidence            36889999999999753211    11222 1 1 2  3999999999977787876654 4 456666666655433333


Q ss_pred             CChHhHHHHHhcHHH--HHHH-HHHHHhHHHHHHHHHhcCC
Q 027424           72 LAPFDCWICLRGVKT--MALR-VEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        72 ~sp~da~ll~~~l~t--l~~R-~~~~~~na~~la~~L~~~p  109 (223)
                      .+....+.+.+.|+.  ...+ .++..++...+.+.|+++.
T Consensus       268 ~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g  308 (384)
T PRK12414        268 ADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGSR  308 (384)
T ss_pred             CCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            344333344444432  1112 2444666777888998873

>TIGR02006 IscS cysteine desulfurase IscS

Probab=98.38  E-value=1.4e-05  Score=72.95  Aligned_cols=190  Identities=16%  Similarity=0.158  Sum_probs=97.6

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-------HHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-------~~~~g~~~   72 (223)
                      +||++|++++||++.+.+.. .+.-+.|+|+++-|.+|+++.++  +|+ +.++++... ++...       +.....+.
T Consensus       167 l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G--~G~-l~~~~~~~~-~~~~~~~g~~~~~~~~~gt~  242 (402)
T TIGR02006       167 ICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKG--IGA-LYVRRKPRV-RLEALIHGGGHERGMRSGTL  242 (402)
T ss_pred             HHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCc--eEE-EEEccCCCC-CCCceecCCCccCCccCCCc
Confidence            47899999999999876643 34445799999999999876444  444 545543221 11110       01111122


Q ss_pred             ChHhHHHHHhcHHHHH----HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHH
Q 027424           73 APFDCWICLRGVKTMA----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL  148 (223)
Q Consensus        73 sp~da~ll~~~l~tl~----~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~  148 (223)
                      +.....-+..+++.+.    .+.++..+.+..+.+.|+..|.| ++..+. +    .    + .+ ....++|.....+ 
T Consensus       243 ~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v-~~~~~~-~----~----~-~p-~~~~v~f~~~~~~-  309 (402)
T TIGR02006       243 PTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIEEV-YLNGDL-E----H----R-VP-GNLNVSFNYVEGE-  309 (402)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCc-c----c----c-CC-CeEEEEEeCcCHH-
Confidence            3323333445555443    33345555566666677677765 443321 0    0    0 00 1225666632222 


Q ss_pred             HHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC----CCeEEEEecC----CCHHHHHHHHHHHHh
Q 027424          149 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGI----EDVNDLISDLDKALR  219 (223)
Q Consensus       149 ~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~----~~liRlsvGl----Ed~~dL~~dl~~Al~  219 (223)
                        .+...++  .+.++-|..    |.+   .+.. +....+.+|++    .+.||+|+|.    ||++.|++-|++.++
T Consensus       310 --~~~~~l~--~i~v~~G~~----c~~---~~~~-~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~  376 (402)
T TIGR02006       310 --SLIMALK--DLAVSSGSA----CTS---ASLE-PSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAID  376 (402)
T ss_pred             --HHHHhcC--CEEEechhh----cCC---CCCC-ccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence              2333343  223333321    111   0100 01122456664    4799999995    567777777776654

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=98.38  E-value=2.5e-05  Score=70.94  Aligned_cols=106  Identities=18%  Similarity=0.199  Sum_probs=64.8

Q ss_pred             CccccCCEEEEecCCCCCCCcC---c---c----cCCCc-----EEEecccccccCCcccceeEEEecChhHHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR---P---L----ELGAD-----IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~---p---l----~~GAD-----ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~   65 (223)
                      +|++++++||+|+++.-..+..   |   +    ..+.|     |++.|+||.++..|..+|. +++ ++.+.+++....
T Consensus       194 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~-~~~-~~~l~~~~~~~~  271 (396)
T PRK09147        194 LSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGF-VAG-DAALLKKFLLYR  271 (396)
T ss_pred             HHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeee-ecC-CHHHHHHHHHHh
Confidence            3678999999999985432111   1   1    12333     9999999998888888866 444 456767776555


Q ss_pred             HhcCCCCChHhHHHHHhcHH---HHHHHHHHHHhHHHHHHHHHhcC
Q 027424           66 NAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l~---tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      ...+..+++.........+.   .+....++..++...+.+.|+++
T Consensus       272 ~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  317 (396)
T PRK09147        272 TYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV  317 (396)
T ss_pred             hhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54444555544333333332   23333455566666777788764

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=98.37  E-value=1.7e-05  Score=72.53  Aligned_cols=173  Identities=21%  Similarity=0.219  Sum_probs=113.6

Q ss_pred             CccccCCEEEEecCCCCCCCc-C--------ccc-CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH--HHhc
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-R--------PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~--------pl~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~--~~~~   68 (223)
                      +++++|+.|+||++|+.++.= +        -++ --.||++.+++|.++.    +||.+. .++.+.+.+...  .-.+
T Consensus       196 L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs----~Gg~v~-g~~~~~d~L~~~ar~~if  270 (388)
T COG0156         196 LAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS----SGGYIA-GSAALIDYLRNRARPFIF  270 (388)
T ss_pred             HHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc----cCceee-CcHHHHHHHHHhCCceec
Confidence            478999999999999876531 1        111 1138999999999993    588775 455665554432  2245


Q ss_pred             CCCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           69 GSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      .++++|..+.-...+++.+   ..|.++..+|+..+.+-++....      +..             ....+++.+.+++
T Consensus       271 StalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~~~------~~~-------------~s~s~I~pv~~gd  331 (388)
T COG0156         271 STALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALGL------VLL-------------PSESPIIPVILGD  331 (388)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC------ccC-------------CCCCCeeeeEeCC
Confidence            6788998777777777776   47778888888777754444332      111             1245777788887


Q ss_pred             HHHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          146 LALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       146 ~~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      ...+.++-+.+   +++-         +-+.+|...              -....+|+++=....++-|+.+.++|..
T Consensus       332 ~~~a~~~s~~l~~~Gi~v---------~~i~~PTVp--------------~gtarlRi~lta~ht~~~I~~l~~~l~~  386 (388)
T COG0156         332 EERALEASRALLEEGIYV---------SAIRPPTVP--------------KGTARLRITLTAAHTEEDIDRLAEALSE  386 (388)
T ss_pred             HHHHHHHHHHHHHCCeeE---------eeecCCCCC--------------CCcceEEEEecCCCCHHHHHHHHHHHHh
Confidence            66666654443   3331         333445321              0235699999999888888888888864

>PRK08363 alanine aminotransferase; Validated

Probab=98.37  E-value=2.7e-05  Score=70.77  Aligned_cols=111  Identities=14%  Similarity=0.060  Sum_probs=63.2

Q ss_pred             CccccCCEEEEecCCCCCCCcC---c-ccC-CCc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc---CC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR---P-LEL-GAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE---GS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~---p-l~~-GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~---g~   70 (223)
                      +|+++|+++|+|++++.-.+..   + ..+ +.+  |++.|+||.++..|..+|.+++.+++.+.+.+.......   ..
T Consensus       194 ~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~  273 (398)
T PRK08363        194 IAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRL  273 (398)
T ss_pred             HHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence            3678999999999975321111   1 111 222  778999999888888887655424555544444322111   11


Q ss_pred             CCChHhHHHHHhcHH----HHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           71 GLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        71 ~~sp~da~ll~~~l~----tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ..++.....+.+.|.    .+....++..++...+.+.|+++|.+
T Consensus       274 ~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~  318 (398)
T PRK08363        274 CPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGI  318 (398)
T ss_pred             cCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            234433333333332    23333466667777788899888764

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=98.36  E-value=2e-06  Score=77.81  Aligned_cols=110  Identities=18%  Similarity=0.198  Sum_probs=69.4

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC--ChHhHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCW   78 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~--sp~da~   78 (223)
                      +||++|+++++|++.+.++ ..+.++|+|+++.|.||++.|+.   +|+++.+ +++.+.++......+..+  ......
T Consensus       174 ~a~~~gi~vivD~a~~~~~-~~~~~~g~D~~~~S~~K~l~gp~---~G~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~  248 (363)
T TIGR01437       174 VAQEHNLPLIVDAAAEEDL-QKYYRLGADLVIYSGAKAIEGPT---SGLVLGK-KKYIEWVKLQSKGIGRAMKVGKENIL  248 (363)
T ss_pred             HHHHcCCeEEEECCCCCch-HHHHHcCCCEEEEeCCcccCCCc---eEEEEEc-HHHHHHHHhccCCCcceeccCHHHHH
Confidence            4899999999999997433 34567899999999999999873   6777654 445454432221111111  111112


Q ss_pred             HHHhcHHHHH----HHHHHHHhHHHHHHHHHhcCCCeeEEE
Q 027424           79 ICLRGVKTMA----LRVEKQQDNAQKIAEFLASHPRVKKVN  115 (223)
Q Consensus        79 ll~~~l~tl~----~R~~~~~~na~~la~~L~~~p~v~~V~  115 (223)
                      -+..+++.+.    .+.++..+++..+.+.|++.|++.-..
T Consensus       249 gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~  289 (363)
T TIGR01437       249 GLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLKGVSASI  289 (363)
T ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            2334444442    234556677888999999998875443

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=98.36  E-value=2.5e-05  Score=70.94  Aligned_cols=107  Identities=10%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-cCCCc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-ELGAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-~~GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++++++|+|++++--.+    ..++ +...+  |++.|+||.++-+|..+|.++ .+ +++.+++.........+.+
T Consensus       194 ~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v-~~-~~~~~~~~~~~~~~~~~~~  271 (391)
T PRK07309        194 VLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIF-AP-AEFTAQLIKSHQYLVTAAT  271 (391)
T ss_pred             HHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEE-eC-HHHHHHHHHHHhhcccCCC
Confidence            36889999999999853221    1111 12223  899999999987777776644 44 4566666654433222344


Q ss_pred             hHhHHHHHhcHHHH---HHHH-HHHHhHHHHHHHHHhcCC
Q 027424           74 PFDCWICLRGVKTM---ALRV-EKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        74 p~da~ll~~~l~tl---~~R~-~~~~~na~~la~~L~~~p  109 (223)
                      +..-+.+.+.++.-   ..++ ++..++...+.+.|+++.
T Consensus       272 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (391)
T PRK07309        272 TMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDLG  311 (391)
T ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            44333344444431   1222 344555666777887763

>PRK08068 transaminase; Reviewed

Probab=98.35  E-value=9.1e-06  Score=73.64  Aligned_cols=107  Identities=13%  Similarity=0.027  Sum_probs=64.5

Q ss_pred             CccccCCEEEEecCCCCCCC--cC--c-ccC-C---CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL--SR--P-LEL-G---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~--~~--p-l~~-G---ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++++++|+|++++--..  ..  + +.. +   -.|++.|+||.++-.|..+|+++ . ++++.+.+.........+
T Consensus       195 la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~-~-~~~l~~~l~~~~~~~~~~  272 (389)
T PRK08068        195 FAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAV-G-NESVIEAINLLQDHLFVS  272 (389)
T ss_pred             HHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEe-c-CHHHHHHHHHHHhhccCC
Confidence            36789999999999842111  11  1 111 1   23899999999987787877654 4 556777776655544444


Q ss_pred             CChHhHHHHHhcH----HHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           72 LAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        72 ~sp~da~ll~~~l----~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .++.....+...+    +.+....++..++...+.+.|+.+.
T Consensus       273 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~g  314 (389)
T PRK08068        273 LFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREIG  314 (389)
T ss_pred             CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            4432222233333    2233444566667777888888763

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=98.35  E-value=2.6e-05  Score=71.71  Aligned_cols=105  Identities=12%  Similarity=0.030  Sum_probs=64.4

Q ss_pred             Ccccc-CCEEEEecCCCCCC---CcCcccC--CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAH-GALLLVDNSIMSPV---LSRPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~-g~~lvVDnT~~s~~---~~~pl~~--GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++ +++||+|++++--.   ...++..  .--|++.|++|.++ .|..+|. ++. ++++.+++..........++.
T Consensus       240 la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~GlRiG~-~i~-~~~~~~~~~~~~~~~~~~~s~  316 (431)
T PRK15481        240 LLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-PDLRLAF-VAS-DSATSARLRLRLNSGTQWVSH  316 (431)
T ss_pred             HHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-CCceeEE-EeC-CHHHHHHHHHHHhccccCCCH
Confidence            36777 99999999974211   1222321  12389999999999 8888765 544 456767665444433334566


Q ss_pred             HhHHHHHhcHHH------HHHHHHHHHhHHHHHHHHHhcC
Q 027424           75 FDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        75 ~da~ll~~~l~t------l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ...+.+...|+.      +....+...++-..+.+.|+++
T Consensus       317 ~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~  356 (431)
T PRK15481        317 LLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY  356 (431)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            555555555543      1222344566667788888876

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=98.35  E-value=2.8e-05  Score=71.86  Aligned_cols=116  Identities=12%  Similarity=0.043  Sum_probs=66.9

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc-CC---CcEEEecccccccCCcccceeEEEecChhHHH------HHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE-LG---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAK------ELYFLQN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~-~G---ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~------~l~~~~~   66 (223)
                      +|+++|++||+|+++..-.+    +.|+. ++   -=|++.|+||+++..|-.+|+++...++.+.+      .+.....
T Consensus       218 ~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~  297 (430)
T PLN00145        218 TARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLN  297 (430)
T ss_pred             HHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhc
Confidence            37889999999999853211    11221 11   12899999999888888998866544444332      2222221


Q ss_pred             hcCCCCChHhHHHHHhcHH----H-HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           67 AEGSGLAPFDCWICLRGVK----T-MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        67 ~~g~~~sp~da~ll~~~l~----t-l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                       .....+...-+.+...|+    . +....++..++...+.+.|+.+|.+..+.+|
T Consensus       298 -~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P  352 (430)
T PLN00145        298 -ISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKP  352 (430)
T ss_pred             -ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCC
Confidence             121222222222333332    2 3444566677778888899887766444455

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=98.35  E-value=2.9e-05  Score=69.81  Aligned_cols=175  Identities=25%  Similarity=0.261  Sum_probs=97.7

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHH------------HHH--
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY------------FLQ--   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~------------~~~--   65 (223)
                      +||++|++++||.|.+-+.. .+.-++|+|+++-|.+| +.|+.-  .|++..+++ ..++++            ...  
T Consensus       164 ~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-l~gp~G--~g~l~v~~~-~~~~~~p~~~~~~~~~~~~~~~~  239 (371)
T PF00266_consen  164 LAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK-LGGPPG--LGFLYVRPE-AIERLRPAKPGGGYLDFPSLQEY  239 (371)
T ss_dssp             HHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-TTSSST--EEEEEEEHH-HHHHHHTSSSSSSTTTHHHHHHH
T ss_pred             hhhccCCceeEechhccccccccccccccceeeecccc-cCCCCc--hhhheehhh-hhhccccccccccccccccchhc
Confidence            47899999999999876643 44455799999999999 665532  366767763 333331            001  


Q ss_pred             -------HhcCCCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           66 -------NAEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        66 -------~~~g~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                             +..+.+.+....+-+..+++-+     ....++..+.+..+.+.|++.|.+ .++-|.-   +         .
T Consensus       240 ~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~-~~~~~~~---~---------~  306 (371)
T PF00266_consen  240 GLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGI-EVLGPDD---E---------P  306 (371)
T ss_dssp             CHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE-EESSSSC---G---------G
T ss_pred             ccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCce-eEeeecc---c---------c
Confidence                   0112233333333344455544     222466777888888899898876 4433311   1         2


Q ss_pred             CCCeeEEEEeC--CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC-HHHH
Q 027424          134 GAGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-VNDL  210 (223)
Q Consensus       134 g~ggl~sf~~~--~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd-~~dL  210 (223)
                      ..+++++|.+.  +.+...+.++.-++.-   +.|..-+   .|.           ....++ ++.||+|+|.-+ .+|+
T Consensus       307 ~~~~i~~~~~~~~~~~~~~~~L~~~~I~~---~~G~~~~---~~~-----------~~~~~~-~~~iRvS~~~~nt~~dv  368 (371)
T PF00266_consen  307 RRPSIVSFNLPGSDADDVVKYLEERGIAV---STGSACA---GPS-----------LDILGM-GGVIRVSLHYYNTEEDV  368 (371)
T ss_dssp             BGTTEEEEEETTSSHHHHHHHHHHHTEEE---EESTTTC---HHH-----------HHHHHT-TTEEEEE-GTTSSHHHH
T ss_pred             cccceEEEeecCCCHHHHHHHHhhcCEEE---eccCccc---HHH-----------HHHhCC-CCEEEEeccCCCCHHHH
Confidence            26899999983  3455666665555542   2232211   111           111121 288999999876 3443

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PLN02187 rooty/superroot1

Probab=98.34  E-value=2.5e-05  Score=72.93  Aligned_cols=111  Identities=12%  Similarity=0.043  Sum_probs=66.8

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc-CCC---cEEEecccccccCCcccceeEEEecChhH---HHHHHHHHHhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE-LGA---DIVMHSATKFIAGHSDVMAGVLAVKGERL---AKELYFLQNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~-~GA---Divv~S~tK~l~G~~d~~~G~v~~~~~~~---~~~l~~~~~~~g   69 (223)
                      +|+++|++||+|+.++--.+    +.|+. +..   =|++.|++|.++-.|..+|+++..+++.+   .+.+.......+
T Consensus       232 ~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~  311 (462)
T PLN02187        232 TARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLD  311 (462)
T ss_pred             HHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhcc
Confidence            36889999999999753211    11221 111   27889999999999999887664344332   234444444433


Q ss_pred             CC--CChHhHHHHHhcHH----H-HHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           70 SG--LAPFDCWICLRGVK----T-MALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        70 ~~--~sp~da~ll~~~l~----t-l~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      .+  .+...-..+...++    . +....+...++...+.+.|+.+|.+
T Consensus       312 ~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~  360 (462)
T PLN02187        312 VTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCV  360 (462)
T ss_pred             ccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            22  23333334444443    2 3344466677888899999987754

>PRK08175 aminotransferase; Validated

Probab=98.32  E-value=3.5e-05  Score=70.01  Aligned_cols=107  Identities=9%  Similarity=-0.001  Sum_probs=62.3

Q ss_pred             CccccCCEEEEecCCCCCCC----cCc---cc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRP---LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~p---l~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|+++.--..    ..+   +.  .+.-|++.|+||.++.+|..+|. ++. ++++.+++.........+
T Consensus       192 ~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~-~~~-~~~l~~~~~~~~~~~~~~  269 (395)
T PRK08175        192 LAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGF-MVG-NPELVSALARIKSYHDYG  269 (395)
T ss_pred             HHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhhee-eeC-CHHHHHHHHHHHhhcccC
Confidence            47889999999999742110    111   11  12236789999999878878765 544 456777776655443333


Q ss_pred             CChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcCC
Q 027424           72 LAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        72 ~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .++.....+...++.    +....++..++...+.+.|++++
T Consensus       270 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  311 (395)
T PRK08175        270 TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAG  311 (395)
T ss_pred             CCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333222223333332    22223445566777888888763

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=98.31  E-value=3.1e-05  Score=70.50  Aligned_cols=115  Identities=13%  Similarity=0.001  Sum_probs=63.1

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-cCCC---cEEEecccccccCCcccceeEEEecCh----hHHHHHHHHHHhc
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-ELGA---DIVMHSATKFIAGHSDVMAGVLAVKGE----RLAKELYFLQNAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-~~GA---Divv~S~tK~l~G~~d~~~G~v~~~~~----~~~~~l~~~~~~~   68 (223)
                      +|+++|+++|+|+++..-..    +.|+ .+-.   =|++.|+||.++..|..+|.++..+++    ++.+.+...... 
T Consensus       196 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~-  274 (401)
T TIGR01264       196 VAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQR-  274 (401)
T ss_pred             HHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhc-
Confidence            36789999999999753211    1121 1111   278999999988888888776543222    222333222221 


Q ss_pred             CCCCChHhHHHHHhcHH----H-HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           69 GSGLAPFDCWICLRGVK----T-MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~----t-l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      ....++.....+...|+    . +....++..++...+.++|+.+|.+ .+..|
T Consensus       275 ~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~-~~~~p  327 (401)
T TIGR01264       275 ILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGL-RPVMP  327 (401)
T ss_pred             cCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccCC
Confidence            11233333333333332    2 3333456666777888999987653 33344

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PLN02656 tyrosine transaminase

Probab=98.31  E-value=3.9e-05  Score=70.22  Aligned_cols=110  Identities=11%  Similarity=0.086  Sum_probs=65.4

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc-CCC---cEEEecccccccCCcccceeEEEec------ChhHHHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE-LGA---DIVMHSATKFIAGHSDVMAGVLAVK------GERLAKELYFLQN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~-~GA---Divv~S~tK~l~G~~d~~~G~v~~~------~~~~~~~l~~~~~   66 (223)
                      +|+++|++||+|++++--.+    +.|+. +..   =|++.|+||.++..|..+|.++.-+      +.++.+++.....
T Consensus       197 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~  276 (409)
T PLN02656        197 TAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFD  276 (409)
T ss_pred             HHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHh
Confidence            36889999999999863211    11221 111   2788999999888888887766432      2356566655444


Q ss_pred             hcCCCCChHhHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           67 AEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        67 ~~g~~~sp~da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ..+ ..++..-+.+...++     .+....++..++...+.+.|+..+.+
T Consensus       277 ~~~-~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~  325 (409)
T PLN02656        277 ILG-GPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCI  325 (409)
T ss_pred             hhc-CCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            332 234433344444443     13333455566667788888876643

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=98.31  E-value=1.3e-06  Score=82.54  Aligned_cols=193  Identities=21%  Similarity=0.197  Sum_probs=112.1

Q ss_pred             ccccCCEEEEecCCCCCCCcC------cccCCCcEEEecccccccCCcccceeEEEecCh-hH-HHHHHHHHHhcCCCCC
Q 027424            2 AHAHGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-RL-AKELYFLQNAEGSGLA   73 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~-~~-~~~l~~~~~~~g~~~s   73 (223)
                      +|+.++++.+|+.++.++.+.      .++.|+|+|++|+||.++  +.+|+..++.++. .+ .+++.....+.. +.|
T Consensus       191 ~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~--alSQaS~iHv~~~~~~~~~r~nea~~~h~-STS  267 (557)
T COG1982         191 LHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQSTHKLLA--ALSQASMIHVKDGRAVNHERFNEALMMHQ-STS  267 (557)
T ss_pred             HhhcCceEEhhhcCcccccccccCcchhhhcCceEEEechhhhhh--hhhhhHHHhhCCCccCCHHHHHHHHHHHc-cCC
Confidence            567899999999998765433      334699999999999999  7789999998862 22 245555544444 679


Q ss_pred             hHhHHHHHhcHHHHHHHH-----HHH----HhHHHHHHHHHhc----CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEE
Q 027424           74 PFDCWICLRGVKTMALRV-----EKQ----QDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  140 (223)
Q Consensus        74 p~da~ll~~~l~tl~~R~-----~~~----~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~s  140 (223)
                      |  +|.++.+++. ..++     ++.    .+.+..+.+.+++    .+.+ .+.=|.....+..      +.|+.+.  
T Consensus       268 P--sY~l~ASlD~-Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~------whgf~~~--  335 (557)
T COG1982         268 P--SYPLMASLDV-ARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFF-PVLQPEKLDPPTG------WHGFEDY--  335 (557)
T ss_pred             c--hHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCe-eeccccccCCccc------ccccccc--
Confidence            9  9999999999 3322     222    3444444444433    2322 1222221100000      3333321  


Q ss_pred             EEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          141 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       141 f~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                            ..-.-++|-+|+.-..+.+|=.-..++.. .--|+..+    .+.+--.-++=++.|+++...+++-|.++++.
T Consensus       336 ------~~~~~~lDP~Klti~tp~~Gipg~~v~~~-L~e~gii~----e~~~d~~~lll~~~~~gk~~~lv~~L~~f~r~  404 (557)
T COG1982         336 ------ADDQYFLDPTKLTITTPEFGIPGAIVAKY-LREHGIIP----EETGDYSNLLLFSPGIGKWQTLVDRLLEFKRR  404 (557)
T ss_pred             ------cccceeccccEEEEecCCCCCcHHHHHHH-HHHcCCee----eecCCceeeEEeeeccchHHHHHHHHHHHHHh
Confidence                  11123567777765555666433332110 00011110    12233335788889999999999999988873

>PRK09265 aminotransferase AlaT; Validated

Probab=98.30  E-value=2.4e-05  Score=71.35  Aligned_cols=115  Identities=10%  Similarity=0.044  Sum_probs=62.2

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-cC--CCc-EEEecccccccCCcccceeEEEecChhH----HHHHHHHHHhc
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-EL--GAD-IVMHSATKFIAGHSDVMAGVLAVKGERL----AKELYFLQNAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-~~--GAD-ivv~S~tK~l~G~~d~~~G~v~~~~~~~----~~~l~~~~~~~   68 (223)
                      +|+++|+++|+|+++.--..    ..++ .+  ... |++.|++|.++..|..+|.++...++.+    .+.+... ...
T Consensus       196 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~  274 (404)
T PRK09265        196 IARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASM  274 (404)
T ss_pred             HHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHH-hcc
Confidence            36889999999999742111    0111 11  112 5779999999888888887765444432    2333222 122


Q ss_pred             CCCCChHhHHHHHhcHHH------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           69 GSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~t------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      ....+...-+.+...|..      +....++..++...+.+.|+.+|.+ .+..|
T Consensus       275 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~-~~~~p  328 (404)
T PRK09265        275 RLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGV-SCVKP  328 (404)
T ss_pred             ccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cccCC
Confidence            223343333333333321      1111234556667788888887654 34434

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=98.28  E-value=2.9e-05  Score=69.28  Aligned_cols=170  Identities=17%  Similarity=0.146  Sum_probs=95.5

Q ss_pred             CccccCCEEEEecCCCCCC---CcCc--c---cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc----
Q 027424            1 MAHAHGALLLVDNSIMSPV---LSRP--L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE----   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~---~~~p--l---~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~----   68 (223)
                      +||++|++++||++++...   ...+  +   ..|+|.+.-|.+|+..++ -..|+ ++.+++++.+.+.......    
T Consensus       176 l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~-~~~G~-~~~~~~~~~~~l~~~~~~~~~~~  253 (371)
T PRK13520        176 IALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAP-IPAGG-ILFRDESYLDALAVDTPYLTSKK  253 (371)
T ss_pred             HHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCcc-CCceE-EEEcCHHHHHhhcccCccccCCC
Confidence            4789999999999986432   1111  1   248899999999986532 23344 4455555544442111110    


Q ss_pred             ----CCCCChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeE
Q 027424           69 ----GSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  139 (223)
Q Consensus        69 ----g~~~sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~  139 (223)
                          +.+.++..+..+..+++.     +..+.++..+++..+.+.|++. ++.-+..|                 ..+++
T Consensus       254 ~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-----------------~~~~v  315 (371)
T PRK13520        254 QATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEP-----------------VLNIV  315 (371)
T ss_pred             CcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCC-----------------CceEE
Confidence                112222334445555554     3456788888888888888876 44223222                 24578


Q ss_pred             EEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHH
Q 027424          140 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  215 (223)
Q Consensus       140 sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~  215 (223)
                      +|.+.+.+...+.+..-+++ .  +.+       .                   .++.+|+|++.    ||.+.+++.|+
T Consensus       316 ~~~~~~~~~v~~~L~~~gi~-v--~~~-------~-------------------~~~~iRis~~~~~t~edi~~~~~~l~  366 (371)
T PRK13520        316 AFDDPNPDEVREKLRERGWR-V--SVT-------R-------------------CPEALRIVCMPHVTREHIENFLEDLK  366 (371)
T ss_pred             EEecCCHHHHHHHHHHCCce-e--ccC-------C-------------------CCCEEEEEEECCCCHHHHHHHHHHHH
Confidence            88775444333333332332 1  100       0                   13569999974    56677777776


Q ss_pred             HHHh
Q 027424          216 KALR  219 (223)
Q Consensus       216 ~Al~  219 (223)
                      +.++
T Consensus       367 ~~~~  370 (371)
T PRK13520        367 EVKK  370 (371)
T ss_pred             HHhh
Confidence            6654

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=98.27  E-value=5.8e-05  Score=68.06  Aligned_cols=169  Identities=17%  Similarity=0.175  Sum_probs=95.5

Q ss_pred             cCCEEEEecCCCCCCCc-CcccC-C---CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHH
Q 027424            5 HGALLLVDNSIMSPVLS-RPLEL-G---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI   79 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~-~pl~~-G---ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~l   79 (223)
                      +++++|+|+++.-.... .++.+ .   -=|++.|+||.++-.|..+|.++ . ++++.+.+...+...+  ++......
T Consensus       183 ~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v-~-~~~l~~~l~~~~~~~~--~~~~~~~~  258 (364)
T PRK04781        183 GKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLI-A-NAELIAVLRRCQAPYP--VPTPCAAL  258 (364)
T ss_pred             CCcEEEEeCcchhhcCCcchHHHHhhCCCEEEEecChhhcccccceeeeee-C-CHHHHHHHHhccCCCC--CCHHHHHH
Confidence            47899999998532211 11111 1   12889999999986777886644 4 4567777665544333  33332333


Q ss_pred             HHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHh
Q 027424           80 CLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  154 (223)
Q Consensus        80 l~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~  154 (223)
                      +...|++     ...++++..++...+.+.|++.|.+..+ +|.                .|..+.+++.+.+...+.+.
T Consensus       259 a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~----------------~g~f~~~~~~~~~~~~~~l~  321 (364)
T PRK04781        259 AEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRV-YPS----------------QGNFLLVRFDDAEAAFQALL  321 (364)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeE-CCC----------------CCcEEEEEcCCHHHHHHHHH
Confidence            3444433     3445666777788899999988765444 451                35555556654333333333


Q ss_pred             hcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHHh
Q 027424          155 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDKALR  219 (223)
Q Consensus       155 ~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd-~~dL~~dl~~Al~  219 (223)
                      .-++. +  -          |..  .+         .+ .++.+||++|..+ .+.|++-|++-.+
T Consensus       322 ~~gI~-v--~----------~~~--~~---------~~-~~~~~Ris~~~~~~~~~l~~al~~~~~  362 (364)
T PRK04781        322 AAGVV-V--R----------DQR--AA---------PR-LSDALRITLGTPEQNDRVLAALQRTQA  362 (364)
T ss_pred             HCCeE-E--e----------eCC--CC---------CC-CCCeEEEeCCCHHHHHHHHHHHHHHHh
Confidence            33332 1  1          110  00         01 2467999999764 4677777766443

>PRK05942 aspartate aminotransferase; Provisional

Probab=98.27  E-value=7.4e-05  Score=67.87  Aligned_cols=106  Identities=11%  Similarity=0.044  Sum_probs=62.0

Q ss_pred             CccccCCEEEEecCCCCCCC----cCc---cc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRP---LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~p---l~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|++||+|++++-...    ..+   +.  ....|++.|+||.++..|..+|.+ +. ++++.++++........+
T Consensus       198 ~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i-~~-~~~l~~~l~~~~~~~~~~  275 (394)
T PRK05942        198 FARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFV-VG-NRHIIQGLRTLKTNLDYG  275 (394)
T ss_pred             HHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeee-ec-CHHHHHHHHHHHhhcccC
Confidence            37889999999999742111    011   11  123488899999997677777654 44 456777777665543333


Q ss_pred             CChHhHHHHHhcHH---HHHHHH-HHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVK---TMALRV-EKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~---tl~~R~-~~~~~na~~la~~L~~~  108 (223)
                      .+......+...++   ....++ ++..++...+.+.|+..
T Consensus       276 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  316 (394)
T PRK05942        276 IFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGEL  316 (394)
T ss_pred             CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            44433334444443   222333 33445556677778765

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=98.26  E-value=6e-06  Score=73.72  Aligned_cols=81  Identities=15%  Similarity=0.074  Sum_probs=47.3

Q ss_pred             CccccCCEEEEecCCCCCCC--cCccc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHh
Q 027424            1 MAHAHGALLLVDNSIMSPVL--SRPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD   76 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~--~~pl~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~d   76 (223)
                      +|+++|+++++|+++.....  ..++.  ..--+++.|++|.++..|..+|. +++ ++++.+.+.......+  +++..
T Consensus       183 l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~-~~~-~~~~~~~~~~~~~~~~--~~~~~  258 (361)
T PRK00950        183 ILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGY-GFV-PEWLIDYYMRAKTPFS--LTRLS  258 (361)
T ss_pred             HHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcch-hcC-CHHHHHHHHHhcCCCC--CCHHH
Confidence            36788999999999853221  11221  11127889999999877777655 444 4566665554433332  44544


Q ss_pred             HHHHHhcHH
Q 027424           77 CWICLRGVK   85 (223)
Q Consensus        77 a~ll~~~l~   85 (223)
                      .+.+.+.++
T Consensus       259 ~~~a~~~l~  267 (361)
T PRK00950        259 QAAAIAALS  267 (361)
T ss_pred             HHHHHHHhc
Confidence            444444443

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=98.25  E-value=3.6e-05  Score=68.88  Aligned_cols=106  Identities=13%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             ccccCCEEEEecCCCCCCCcC--c-cc-CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhH
Q 027424            2 AHAHGALLLVDNSIMSPVLSR--P-LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC   77 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~--p-l~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da   77 (223)
                      +++++..+|+|+++.......  + +. ..--|++.|+||.++-.|..+|.++ . ++++.+.+......  ..+++..-
T Consensus       174 ~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v-~-~~~~~~~~~~~~~~--~~~~~~~q  249 (351)
T PRK14807        174 IEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAV-A-NENILKYLNLVKSP--YNINSLSQ  249 (351)
T ss_pred             HHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeee-c-CHHHHHHHHHccCC--CCcCHHHH
Confidence            456678899999985432111  1 11 1224899999999975677776544 4 55676666544322  22444433


Q ss_pred             HHHHhcHH--HHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           78 WICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        78 ~ll~~~l~--tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      +.+.+-++  .+..+++...++...+.+.|++.|.+
T Consensus       250 ~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~  285 (351)
T PRK14807        250 VIALKVLRTGVLKERVNYILNERERLIKELSKIPGI  285 (351)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            44444443  34445566667777788888877665

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=98.24  E-value=6.5e-05  Score=67.19  Aligned_cols=108  Identities=17%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             CccccCCEEEEecCCCCCCC--------cCccc---CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc-
Q 027424            1 MAHAHGALLLVDNSIMSPVL--------SRPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~--------~~pl~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~-   68 (223)
                      +||++|++++||++++....        ..++.   .|+|.+.-|.+|+..++ -..||++. .++++.+.+....... 
T Consensus       178 l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~~G~~~~-~~~~~~~~l~~~~~~~~  255 (373)
T TIGR03812       178 IALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IPAGGILF-RSKSYLKYLSVDAPYLT  255 (373)
T ss_pred             HHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCc-CCceEEEE-eCHHHHhhhcccCcccC
Confidence            47889999999999863321        11222   38899999999975432 23355554 4445544442111111 


Q ss_pred             C-------CCCChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCC
Q 027424           69 G-------SGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        69 g-------~~~sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~  110 (223)
                      +       .+.++.....+...++.     +..+.++..+++..+.+.|++.+.
T Consensus       256 ~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~  309 (373)
T TIGR03812       256 VKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGF  309 (373)
T ss_pred             CCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            1       01222233344445554     345678888999999999998763

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=98.24  E-value=9.6e-06  Score=72.65  Aligned_cols=170  Identities=12%  Similarity=0.076  Sum_probs=90.5

Q ss_pred             cCCEEEEecCCCCCCC----cCcc---cCC-CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHh
Q 027424            5 HGALLLVDNSIMSPVL----SRPL---ELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD   76 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~----~~pl---~~G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~d   76 (223)
                      +|+++++|+++.....    ..++   +.+ -.|++.|++|.++.++..+|. +++ ++++.+.+......++  .++..
T Consensus       185 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~-l~~-~~~~~~~l~~~~~~~~--~~~~~  260 (367)
T PRK02731        185 PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGY-GIA-PPEIIDALNRVRQPFN--VNSLA  260 (367)
T ss_pred             CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceee-eeC-CHHHHHHHHHccCCCC--CCHHH
Confidence            4899999999753221    1111   111 237788999998766666655 544 4566666654433222  34443


Q ss_pred             HHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHH
Q 027424           77 CWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  153 (223)
Q Consensus        77 a~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~  153 (223)
                      .+.+.+.++.   +....+...++...+.+.|++++ + .+ +|                ..|+.+.|.+.+.....+|.
T Consensus       261 ~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~-~~----------------~~g~~~~i~~~~~~~~~~~~  321 (367)
T PRK02731        261 LAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELG-L-EY-IP----------------SVGNFILVDFDDGKDAAEAY  321 (367)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-C-cc-CC----------------CCceEEEEECCCCCCHHHHH
Confidence            4444444432   22223444555666777888763 3 22 23                13677888873222234444


Q ss_pred             hhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHhc
Q 027424          154 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  220 (223)
Q Consensus       154 ~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-Ed~~dL~~dl~~Al~~  220 (223)
                      +.|.--.+.+.-|..                      .| .++.||+|+|- |+.+.+++-|++.+++
T Consensus       322 ~~L~~~gI~v~~~~~----------------------~~-~~~~iRis~~~~~e~~~l~~aL~~~~~~  366 (367)
T PRK02731        322 QALLKRGVIVRPVAG----------------------YG-LPNALRITIGTEEENRRFLAALKEFLAA  366 (367)
T ss_pred             HHHHHCCEEEEeCCC----------------------CC-CCCeEEEecCCHHHHHHHHHHHHHHHhc
Confidence            443211111111110                      11 24679999995 3567777777777665

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=98.23  E-value=3.7e-05  Score=68.46  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=69.8

Q ss_pred             ccccCCEEEEecCCCCCCCcCc--------ccCCCc-EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            2 AHAHGALLLVDNSIMSPVLSRP--------LELGAD-IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~p--------l~~GAD-ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      |+++|+++|+|+++......++        ++.+.+ |+++|++|.++-.+..+|.++ + ++++.+.++........  
T Consensus       177 ~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~-~-~~~~~~~l~~~~~~~~~--  252 (363)
T PF00155_consen  177 AREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIV-A-PPELIERLRRFQRSGLS--  252 (363)
T ss_dssp             HHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEE-E-EHHHHHHHHHHHHHTTS--
T ss_pred             hcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccccccccccccc-c-hhhhhhhhhhccccccc--
Confidence            6789999999999866443321        122334 999999999987777776544 5 55677777766554432  


Q ss_pred             ChHhHHHHHhcHHH-------HHHHHHHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~l~t-------l~~R~~~~~~na~~la~~L~~~  108 (223)
                      +......+...+.+       +..+.++..++...+.+.|+++
T Consensus       253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~  295 (363)
T PF00155_consen  253 SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI  295 (363)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh
Confidence            44444444444443       3445678888899999999887

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=98.23  E-value=5.7e-05  Score=69.15  Aligned_cols=110  Identities=10%  Similarity=0.032  Sum_probs=65.1

Q ss_pred             CccccCCEEEEecCCCCCCCc----Ccc-cC---CCcEEEecccccccCCcccceeEEEecC----hhHHHHHHHHHHhc
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RPL-EL---GADIVMHSATKFIAGHSDVMAGVLAVKG----ERLAKELYFLQNAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~pl-~~---GADivv~S~tK~l~G~~d~~~G~v~~~~----~~~~~~l~~~~~~~   68 (223)
                      +|+++|++||+|+++......    .++ .+   .--|++.|+||.++..|..+|.++..++    +++.+.+...... 
T Consensus       205 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~-  283 (412)
T PTZ00433        205 LCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGML-  283 (412)
T ss_pred             HHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhc-
Confidence            368899999999998632211    111 11   1137889999999888999887665333    2344444443322 


Q ss_pred             CCCCChHhHHHHHhcHH----HH-HHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           69 GSGLAPFDCWICLRGVK----TM-ALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~----tl-~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ...+++.....+...+.    .. ....++..++...+.++|++++.+
T Consensus       284 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  331 (412)
T PTZ00433        284 VCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGL  331 (412)
T ss_pred             cCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            22345543333333332    22 223356667777888999887543

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=98.22  E-value=2.3e-05  Score=69.60  Aligned_cols=104  Identities=16%  Similarity=0.104  Sum_probs=58.2

Q ss_pred             ccccCCEEEEecCCCCCCCcC--cc-cC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            2 AHAHGALLLVDNSIMSPVLSR--PL-EL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~--pl-~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      |+++|+++|+|+++.-.....  ++ .+    .-=|++.|+||.++-.|..+|.++ . ++++.+.+.......  .++.
T Consensus       151 a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v-~-~~~li~~l~~~~~~~--~~~~  226 (332)
T PRK06425        151 CRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIA-T-DDYNMKISRKITEPW--SVCD  226 (332)
T ss_pred             HHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeee-c-CHHHHHHHHHcCCCC--ccCH
Confidence            678899999999975332111  11 11    113788999999987788887654 4 456666665432221  1233


Q ss_pred             HhHHHHHh-cHHHHHHH-HHHHHhHHHHHHHHHhcCC
Q 027424           75 FDCWICLR-GVKTMALR-VEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        75 ~da~ll~~-~l~tl~~R-~~~~~~na~~la~~L~~~p  109 (223)
                      .....+.. ..+....+ .++..++...+.+.|+++.
T Consensus       227 ~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g  263 (332)
T PRK06425        227 PAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAMG  263 (332)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            22222211 11222222 3445566677888888763

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=98.21  E-value=2e-05  Score=71.61  Aligned_cols=168  Identities=20%  Similarity=0.289  Sum_probs=95.7

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++.. +.       +.......|++  +++|.++| +-.+|+++ .++ ++.+.+...........+
T Consensus       212 l~~~~~~llI~DEv~~g-~gr~g~~~~~~~~~~~pDi~--t~sK~l~~-G~~ig~~~-~~~-~~~~~~~~~~~~~t~~~~  285 (398)
T PRK03244        212 ITDRHGALLVLDEVQTG-IGRTGAWFAHQHDGVTPDVV--TLAKGLGG-GLPIGACL-AFG-PAADLLTPGLHGSTFGGN  285 (398)
T ss_pred             HHHHcCCEEEEeccccC-CcccchHHhhhhhCCCCCEE--EEchhhhC-CcccEEEE-EcH-HHHhhccCCCCcCCCCCC
Confidence            47899999999999742 21       11112236766  67899985 45666655 444 455544321111112346


Q ss_pred             hHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhc--CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHH
Q 027424           74 PFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS--HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  149 (223)
Q Consensus        74 p~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~--~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~  149 (223)
                      |..+......|+.+.  ...++..+....+.+.|++  +|.+..                  .+|.|.++.+++... .+
T Consensus       286 ~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~------------------v~g~g~~~~i~~~~~-~~  346 (398)
T PRK03244        286 PVACAAALAVLDTIASEGLLENAERLGEQLRAGIEALGHPLVDH------------------VRGRGLLLGIVLTAP-VA  346 (398)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCceee------------------EeeccEEEEEEEecc-HH
Confidence            766666667766543  2234445555666666765  332211                  235788999998432 34


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      .+|.+.+.-  .+.-+        .|                 ..++.||++..+    ||.+.+++-|++++..
T Consensus       347 ~~~~~~l~~--~Gv~~--------~~-----------------~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~  394 (398)
T PRK03244        347 KAVEAAARE--AGFLV--------NA-----------------VAPDVIRLAPPLIITDAQVDAFVAALPAILDA  394 (398)
T ss_pred             HHHHHHHHH--CCeEE--------ee-----------------cCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            445444321  11110        11                 013569999665    7888899999988874

>PRK07908 hypothetical protein; Provisional

Probab=98.21  E-value=0.00016  Score=64.53  Aligned_cols=171  Identities=18%  Similarity=0.151  Sum_probs=94.1

Q ss_pred             cCCEEEEecCCCCCCC--cCcc---cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHH
Q 027424            5 HGALLLVDNSIMSPVL--SRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI   79 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~--~~pl---~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~l   79 (223)
                      ++.++|+|+++.-.+.  ..++   +..--|++.|+||.++-.+..+|. ++. ++++.+.+......  ...++.....
T Consensus       167 ~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~-~~~-~~~~~~~~~~~~~~--~~~~~~~~~a  242 (349)
T PRK07908        167 PGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGY-ALG-APDVLARLTRGRAH--WPVGTLQLEA  242 (349)
T ss_pred             cCCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeee-eec-CHHHHHHHHhcCCC--CCccHHHHHH
Confidence            4788999998742111  1122   222247888999998756666554 545 45566665543322  2234432222


Q ss_pred             HHhc-----HHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHh
Q 027424           80 CLRG-----VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  154 (223)
Q Consensus        80 l~~~-----l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~  154 (223)
                      +..-     .+.+....++..++...+.+.|+++ .+ ++..|                ..|..+.+.+.+.+...+.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~-~~~~p----------------~~g~~~~~~~~~~~~~~~~l~  304 (349)
T PRK07908        243 IAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GA-RVVDP----------------AAAPFVLVRVPDAELLRKRLR  304 (349)
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-Cc-EeccC----------------CCceEEEEECCcHHHHHHHHH
Confidence            2221     2223333455566667778888877 43 34433                136667777754344444444


Q ss_pred             hcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHhcC
Q 027424          155 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRTG  221 (223)
Q Consensus       155 ~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-Ed~~dL~~dl~~Al~~~  221 (223)
                      .-++.   +.-|....                     +..++.||||+|- |+.+.|++.|++.+.+.
T Consensus       305 ~~gI~---v~~g~~f~---------------------~~~~~~vRis~~~~~~~~~l~~al~~~~~~~  348 (349)
T PRK07908        305 ERGIA---VRRGDTFP---------------------GLDPDYLRLAVRPRAEVPVLVQALAEILKAG  348 (349)
T ss_pred             hCCEE---EEECCCCC---------------------CCCCCeEEEEeCCCccHHHHHHHHHHHHhcc
Confidence            43332   11111100                     1135789999996 57899999999887754

>PLN00175 aminotransferase family protein; Provisional

Probab=98.20  E-value=0.00014  Score=66.77  Aligned_cols=107  Identities=10%  Similarity=0.045  Sum_probs=67.9

Q ss_pred             CccccCCEEEEecCCCCCCCcC---cc-cC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR---PL-EL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~---pl-~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|++||+|+++..-.+..   ++ .+    .--|++.|++|.++..|..+|.++ + ++++.+.+.........+.
T Consensus       215 ~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v-~-~~~l~~~l~~~~~~~~~~~  292 (413)
T PLN00175        215 LCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAI-A-PPHLTWGVRQAHSFLTFAT  292 (413)
T ss_pred             HHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeE-e-CHHHHHHHHHHHhhccCCC
Confidence            4788999999999985322111   11 11    234889999999987787876654 4 4567676666554444445


Q ss_pred             ChHhHHHHHhcHH---HH-HHHHHHHHhHHHHHHHHHhcCC
Q 027424           73 APFDCWICLRGVK---TM-ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        73 sp~da~ll~~~l~---tl-~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ++..-+.+.+.|+   .. ....++..++...+.+.|+++.
T Consensus       293 s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  333 (413)
T PLN00175        293 ATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEVG  333 (413)
T ss_pred             CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            5544444555553   22 3334566677888889998873

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=98.19  E-value=9.1e-05  Score=70.00  Aligned_cols=110  Identities=13%  Similarity=0.099  Sum_probs=59.4

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCCCc---EEEecccccccCCcccceeEEEecChhH----HHHHHHHHHhc
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELGAD---IVMHSATKFIAGHSDVMAGVLAVKGERL----AKELYFLQNAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~GAD---ivv~S~tK~l~G~~d~~~G~v~~~~~~~----~~~l~~~~~~~   68 (223)
                      +|++++++||+|+++.--.+     .....+..|   |++.|++|+++-.|-.+|++++..++++    .+.+..... .
T Consensus       309 ~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~-~  387 (517)
T PRK13355        309 IAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLAN-M  387 (517)
T ss_pred             HHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhc-C
Confidence            37889999999999742111     122223234   3359999998777788877664333333    233322222 2


Q ss_pred             CCCCChHhHHHHHhcHH------HHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           69 GSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~------tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ..+.+....+.+...|+      ....+.++..++...+.+.|++.|.+
T Consensus       388 ~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~  436 (517)
T PRK13355        388 RLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGI  436 (517)
T ss_pred             cCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            11233322333333332      22222344556667788888877664

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=98.18  E-value=0.00012  Score=66.35  Aligned_cols=106  Identities=16%  Similarity=0.153  Sum_probs=64.2

Q ss_pred             CccccCCEEEEecCCCCCCCc---Cc---c----cCCCc-----EEEecccccccCCcccceeEEEecChhHHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS---RP---L----ELGAD-----IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~---~p---l----~~GAD-----ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~   65 (223)
                      +|++++++||+|+++..-...   .+   +    ..|.|     |++.|+||.++..|..+|. ++. ++++.+++....
T Consensus       193 ~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~-~i~-~~~l~~~~~~~~  270 (393)
T TIGR03538       193 LADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGF-VAG-DAEILKAFLRYR  270 (393)
T ss_pred             HHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEE-Eec-CHHHHHHHHHHH
Confidence            367899999999998532211   11   1    12322     8999999988877888766 444 456767766655


Q ss_pred             HhcCCCCChHhHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcC
Q 027424           66 NAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ...+.+.++...+.+...+..   +....++..++...+.+.|+.+
T Consensus       271 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~  316 (393)
T TIGR03538       271 TYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV  316 (393)
T ss_pred             HhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            544544555444444444421   2233345556666677788765

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=98.18  E-value=3.5e-05  Score=68.69  Aligned_cols=172  Identities=19%  Similarity=0.143  Sum_probs=93.0

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHH-HHHHHH-------HHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFL-------QNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~-~~l~~~-------~~~~g~~   71 (223)
                      +||++|++++||++++-+.. .+.-+.|+|+++.|.+|+++-++   .|++..+++.+. ..+...       ......+
T Consensus       163 l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  239 (353)
T TIGR03235       163 VLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKG---IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGT  239 (353)
T ss_pred             HHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCc---eEEEEEccCcccccccCceeeCCCCcCccccCC
Confidence            47899999999999765543 33334689999999999864222   466666664221 111100       0011112


Q ss_pred             CChHhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC--
Q 027424           72 LAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--  145 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~--  145 (223)
                      .++...+-+..+++-+    ..+.+++.+.+..+.+.|++ +++ ++.-|     |+        ....++++|.+.+  
T Consensus       240 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~-~g~-~~~~~-----~~--------~~~~~i~~~~~~~~~  304 (353)
T TIGR03235       240 LPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT-LGV-KLNGD-----PA--------ETIPHILNFSIDGVN  304 (353)
T ss_pred             CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCe-EEeCC-----cc--------cccCCEEEEEeCCcC
Confidence            3333333344455443    35557777777788888876 666 33322     11        1146788887743  


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCC----CeEEEEe
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE----DLVRISV  202 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~----~liRlsv  202 (223)
                      .+...+.++. +   ++++-|..-+    +  . .. .+..-+..+|+++    +.||+|.
T Consensus       305 ~~~v~~~L~~-~---i~v~~g~~~~----~--~-~~-~~~~~l~~~g~~~~~~~~~~r~s~  353 (353)
T TIGR03235       305 SEALIVNLRA-D---AAVSTGSACS----S--S-KY-EPSHVLQAMGLDTDRARGAIRFSW  353 (353)
T ss_pred             HHHHHHHHhC-C---eEEEchhhcC----C--C-CC-CCCHHHHHcCCCHHHhCccEEEeC
Confidence            3444444443 3   3333332111    0  0 00 1123567788865    8899883

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK07683 aminotransferase A; Validated

Probab=98.18  E-value=0.00013  Score=66.21  Aligned_cols=106  Identities=11%  Similarity=0.115  Sum_probs=61.7

Q ss_pred             CccccCCEEEEecCCCCCCCcC---cc-cC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR---PL-EL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~---pl-~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|+++.......   ++ .+    +-.|++.|+||.++-.|..+|.++ . ++++.+++.........+.
T Consensus       189 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~-~-~~~l~~~~~~~~~~~~~~~  266 (387)
T PRK07683        189 VLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLF-A-PSYLAKHILKVHQYNVTCA  266 (387)
T ss_pred             HHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEE-c-CHHHHHHHHHHHHhccCCC
Confidence            3678999999999986432111   21 11    235899999999987787887654 4 4566666654433322233


Q ss_pred             ChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ++.....+..-++.    +....++..++...+.+.|++.
T Consensus       267 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  306 (387)
T PRK07683        267 SSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM  306 (387)
T ss_pred             ChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33332333333321    2222344556667777888765

>PTZ00377 alanine aminotransferase; Provisional

Probab=98.17  E-value=0.0002  Score=67.07  Aligned_cols=115  Identities=14%  Similarity=0.086  Sum_probs=64.0

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcc-----cCCCc-------EEEecccccccC-CcccceeEEEe-cChhHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPL-----ELGAD-------IVMHSATKFIAG-HSDVMAGVLAV-KGERLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl-----~~GAD-------ivv~S~tK~l~G-~~d~~~G~v~~-~~~~~~~~l   61 (223)
                      +|+++|++||+|+.+.--.+     +.++     .+..+       |+++|+||.+.| .|-.+|+++.. .++++.+++
T Consensus       246 ~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l  325 (481)
T PTZ00377        246 FCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQI  325 (481)
T ss_pred             HHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHH
Confidence            47889999999999753211     1111     11111       788999998533 56677665532 366777777


Q ss_pred             HHHHHhcCCCCChHhHHHHHhcH----------HHHHHHHH----HHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           62 YFLQNAEGSGLAPFDCWICLRGV----------KTMALRVE----KQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        62 ~~~~~~~g~~~sp~da~ll~~~l----------~tl~~R~~----~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      ........ +.++..-+.+...+          +.+...++    +..++...+.+.|+++|.+ ++.-|
T Consensus       326 ~~~~~~~~-~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~-~~~~p  393 (481)
T PTZ00377        326 YKLASINL-CSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGV-SCQPV  393 (481)
T ss_pred             HHHhheec-CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-EeecC
Confidence            66543221 23333222333333          22322332    2356777788999888765 34434

>PRK08912 hypothetical protein; Provisional

Probab=98.17  E-value=9.1e-05  Score=67.02  Aligned_cols=107  Identities=14%  Similarity=0.020  Sum_probs=63.8

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc-----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~-----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++++++|+|++++.-.+    ..|+.     .+-+|++.|+||.++-+|..+|. ++.+ +++.+.+.......+.+
T Consensus       187 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~-~~~~-~~~~~~l~~~~~~~~~~  264 (387)
T PRK08912        187 FCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGF-VCAA-PPLLRVLAKAHQFLTFT  264 (387)
T ss_pred             HHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEE-EecC-HHHHHHHHHHHhhcccc
Confidence            36889999999999742111    11111     13579999999999867777765 4444 45666665554443333


Q ss_pred             CChHhHHHHHhcHH---H-HHHHHHHHHhHHHHHHHHHhcCC
Q 027424           72 LAPFDCWICLRGVK---T-MALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        72 ~sp~da~ll~~~l~---t-l~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .++.....+...+.   . +....++..++...+.+.|+.+.
T Consensus       265 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  306 (387)
T PRK08912        265 TPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIG  306 (387)
T ss_pred             CChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            44432333333332   2 22223556677777888898773

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=98.16  E-value=4.5e-05  Score=68.87  Aligned_cols=103  Identities=10%  Similarity=0.108  Sum_probs=61.6

Q ss_pred             cCCEEEEecCCCCCCCcCc---ccCCC-cEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            5 HGALLLVDNSIMSPVLSRP---LELGA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~~p---l~~GA-Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +++++|+|+++.......+   +...- =|++.|+||.++..|..+|.++ . ++++.+.+...+...  .++...-...
T Consensus       198 ~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v-~-~~~l~~~l~~~~~~~--~~~~~~q~a~  273 (374)
T PRK02610        198 EDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAI-G-HPELIAVLEKVRLPY--NLPSFSQLAA  273 (374)
T ss_pred             CCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeee-c-CHHHHHHHHHhcCCC--CCCHHHHHHH
Confidence            4899999999853211111   11111 2889999999988888887655 4 556767665544222  2344333333


Q ss_pred             HhcH---HHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           81 LRGV---KTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        81 ~~~l---~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ...+   +.+..++++..++...+.+.|+.++.+
T Consensus       274 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  307 (374)
T PRK02610        274 QLALEHRQELLAAIPEILQERDRLYQALQELPQL  307 (374)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            3333   334445555666666677888887765

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=98.15  E-value=4.6e-05  Score=68.30  Aligned_cols=106  Identities=18%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh------------
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA------------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~------------   67 (223)
                      +||++|++++||.+..-+. ..+..++++|+++.|++|++.|..-  .|++..++ ++.+++......            
T Consensus       156 l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  232 (368)
T PRK13479        156 VAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPG--FGFVIARR-SELEACKGNSRSLSLDLYDQWAYM  232 (368)
T ss_pred             HHHHcCCEEEEEcccccCCccccccccCceEEEecCccccccCCC--ceEEEECH-HHHHHhhcCCCCeeecHHHHHhhh
Confidence            4789999999997753221 1233356899999999999876432  27776665 343433211000            


Q ss_pred             --cC---CCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCC
Q 027424           68 --EG---SGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        68 --~g---~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p  109 (223)
                        .+   .+.+....+.+..+++.+      ..+.++..+....+.+.|++.+
T Consensus       233 ~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g  285 (368)
T PRK13479        233 EKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALG  285 (368)
T ss_pred             cccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence              01   122322333344455433      3445777778888888888774

>PRK05839 hypothetical protein; Provisional

Probab=98.14  E-value=8.5e-05  Score=67.16  Aligned_cols=66  Identities=17%  Similarity=0.080  Sum_probs=43.1

Q ss_pred             ccccCCEEEEecCCCCCCCcC---c-ccC---------CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc
Q 027424            2 AHAHGALLLVDNSIMSPVLSR---P-LEL---------GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE   68 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~---p-l~~---------GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~   68 (223)
                      |+++|+++|+|++++--+...   + +..         .-=|++.|+||.++..|..+|.++ . ++++.+++.......
T Consensus       184 ~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii-~-~~~~~~~~~~~~~~~  261 (374)
T PRK05839        184 ALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIA-G-DASILKKYKAYRTYL  261 (374)
T ss_pred             HHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEe-c-CHHHHHHHHHHHhhc
Confidence            678999999999975321111   1 110         112889999999888888887755 4 456767766655443


Q ss_pred             C
Q 027424           69 G   69 (223)
Q Consensus        69 g   69 (223)
                      +
T Consensus       262 ~  262 (374)
T PRK05839        262 G  262 (374)
T ss_pred             C
Confidence            3

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=98.14  E-value=6.9e-05  Score=66.68  Aligned_cols=101  Identities=11%  Similarity=0.044  Sum_probs=61.1

Q ss_pred             CCEEEEecCCCCCCCcC-c--c-c-CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC-CCCChHhHHH
Q 027424            6 GALLLVDNSIMSPVLSR-P--L-E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWI   79 (223)
Q Consensus         6 g~~lvVDnT~~s~~~~~-p--l-~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g-~~~sp~da~l   79 (223)
                      ++++|+|+++.. +... +  + + ..-.+++.|++|.++-.|..+|. ++. ++++.+++........ .+.++...+.
T Consensus       175 ~~~livDe~y~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~-~~~-~~~~~~~l~~~~~~~~~~~~~~~~q~~  251 (353)
T PRK05387        175 DSVVVIDEAYVD-FGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGF-AIG-HPELIEALNRVKNSFNSYPLDRLAQAG  251 (353)
T ss_pred             CcEEEEeCcccc-cCCcchHHHHhhCCCEEEEEehhHhhcchhhhcee-eec-CHHHHHHHHHhhccCCCCCcCHHHHHH
Confidence            899999999742 2211 1  1 1 13359999999998756666655 544 4566666665543322 2344444444


Q ss_pred             HHhcHH---HHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           80 CLRGVK---TMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        80 l~~~l~---tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      +.+.++   .+....++..++...+.+.|+++.
T Consensus       252 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g  284 (353)
T PRK05387        252 AIAAIEDEAYFEETRAKVIATRERLVEELEALG  284 (353)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            444443   233344666777888889998874

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=98.14  E-value=0.00015  Score=65.68  Aligned_cols=106  Identities=10%  Similarity=0.022  Sum_probs=60.5

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCc-ccC--CCc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRP-LEL--GAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~p-l~~--GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|+++|++||+|+++.--..     ..+ +.+  .-+  |++.|+||.++-.|..+|.++ . ++++.+++.........
T Consensus       193 ~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v-~-~~~li~~l~~~~~~~~~  270 (388)
T PRK07366        193 FCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAI-G-NAQLIQALRQVKAVVDF  270 (388)
T ss_pred             HHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehc-C-CHHHHHHHHHHHhhccc
Confidence            36789999999999742211     111 111  113  678999999987788887654 4 55677777665554433


Q ss_pred             CCChHhHHHHHhcH---HHHHHH-HHHHHhHHHHHHHHHhcC
Q 027424           71 GLAPFDCWICLRGV---KTMALR-VEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        71 ~~sp~da~ll~~~l---~tl~~R-~~~~~~na~~la~~L~~~  108 (223)
                      ...+.-...++..+   +....+ .+...++...+.+.|+++
T Consensus       271 ~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~  312 (388)
T PRK07366        271 NQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI  312 (388)
T ss_pred             CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            32221111122222   222223 345556666788888877

>PLN02880 tyrosine decarboxylase

Probab=98.14  E-value=4.3e-05  Score=72.02  Aligned_cols=124  Identities=19%  Similarity=0.266  Sum_probs=81.6

Q ss_pred             CccccCCEEEEecCCCCCCCcCc-----cc--CCCcEEEecccccccCCcccceeEEEecChhH-HHHHHHHHHhc----
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP-----LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNAE----   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p-----l~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~-~~~l~~~~~~~----   68 (223)
                      +|+++|+++-||.++|..+...|     ++  .+||-++-+.||++..+  .-+|++.+++... ...+..-..++    
T Consensus       264 i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P--~~~g~llvr~~~~l~~~~~~~~~Yl~~~~  341 (490)
T PLN02880        264 IAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTN--FDCSLLWVKDRNALIQSLSTNPEFLKNKA  341 (490)
T ss_pred             HHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCC--ccEEEEEEeCHHHHHHHHccCHHHhcCcc
Confidence            58899999999999988754332     22  27999999999999855  4567777765332 12111101110    


Q ss_pred             ----------------CCCCChHhHHHH--HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHh
Q 027424           69 ----------------GSGLAPFDCWIC--LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  130 (223)
Q Consensus        69 ----------------g~~~sp~da~ll--~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~  130 (223)
                                      |.-......|+.  ..|.+.+..++++..+.|+.+++.|+++|.++-+.-|             
T Consensus       342 ~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~-------------  408 (490)
T PLN02880        342 SQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR-------------  408 (490)
T ss_pred             ccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------
Confidence                            000012233433  3467778899999999999999999999987544432             


Q ss_pred             hhCCCCeeEEEEe
Q 027424          131 QAKGAGSVLSFLT  143 (223)
Q Consensus       131 ~~~g~ggl~sf~~  143 (223)
                          -.++++|.+
T Consensus       409 ----~~~iv~Fr~  417 (490)
T PLN02880        409 ----IFSLVCFRL  417 (490)
T ss_pred             ----ceEEEEEEE
Confidence                256889987

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=98.14  E-value=1e-05  Score=72.90  Aligned_cols=114  Identities=26%  Similarity=0.322  Sum_probs=83.7

Q ss_pred             CccccCCEEEEecCCCCC--CCcCcccCCCcEEEecc--cccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSP--VLSRPLELGADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~--~~~~pl~~GADivv~S~--tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|++||-|++.+-+  +.-+++---.|+.+-|+  +|.++..   -||+|+++++++.++++.+++.         
T Consensus       135 ~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~i~~g---eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~  211 (363)
T PF01041_consen  135 IARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKIITTG---EGGAVVTNDPELAERARALRNHGRSRDAFRR  211 (363)
T ss_dssp             HHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSSS-SS---S-EEEEESTHHHHHHHHHHTBTTEETSECST
T ss_pred             HHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCCCCcCC---CCeeEEecHHHHHHHhhhhhccCcCcccccc
Confidence            478999999999996544  33233322359999997  6988633   4899999999998888765421         


Q ss_pred             ------cC--CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           68 ------EG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        68 ------~g--~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                            .|  .-++++.|.+.+..|+.+..++++..+|+..+.+.|++.|.+.....|
T Consensus       212 ~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~  269 (363)
T PF01041_consen  212 YRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAGIPGIKPPPIP  269 (363)
T ss_dssp             TEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCG
T ss_pred             ccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCccccccc
Confidence                  11  237888999999999999999999999999999999999987555544

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=98.13  E-value=0.00017  Score=65.99  Aligned_cols=109  Identities=13%  Similarity=0.006  Sum_probs=61.6

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc-CCC---cEEEecccccccCCcccceeEEEecChhHHH------HHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE-LGA---DIVMHSATKFIAGHSDVMAGVLAVKGERLAK------ELYFLQN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~-~GA---Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~------~l~~~~~   66 (223)
                      +|+++++++|+|+++..-..    ..|+. +..   =|++.|+||.++..|..+|.++..+++.+.+      .+.....
T Consensus       198 ~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~  277 (409)
T PLN00143        198 TARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALN  277 (409)
T ss_pred             HHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHh
Confidence            36889999999999853211    12222 111   1899999999988898988766434443322      2222222


Q ss_pred             hcCCCCChHhHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCC
Q 027424           67 AEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        67 ~~g~~~sp~da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~  110 (223)
                      ... ..+......+...|+     .+....++..++...+.+.|++.+.
T Consensus       278 ~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  325 (409)
T PLN00143        278 PAP-FPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPC  325 (409)
T ss_pred             ccC-CCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            111 112222223333332     3444556666677778888887653

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=98.12  E-value=4.3e-05  Score=69.27  Aligned_cols=124  Identities=17%  Similarity=0.204  Sum_probs=67.7

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHH--HHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--YFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l--~~~~~~~g~~   71 (223)
                      +|+++|+++|+|+++.. +       .+.......|++  |++|.+++ +-.+|+ ++.+ +++.+.+  .........+
T Consensus       220 l~~~~~~~li~Dev~~g-~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-g~~~g~-~~~~-~~~~~~~~~~~~~~~~t~~  293 (413)
T cd00610         220 LCRKHGILLIADEVQTG-FGRTGKMFAFEHFGVEPDIV--TLGKGLGG-GLPLGA-VLGR-EEIMDAFPAGPGLHGGTFG  293 (413)
T ss_pred             HHHHcCCEEEEeccccC-CCcCcchhhHhhcCCCCCeE--EEcccccC-ccccEE-EEEc-HHHHHhhccCCCCCCCCCC
Confidence            47899999999999743 2       111112234655  67799997 555555 5454 5565554  1111111123


Q ss_pred             CChHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           72 LAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      .+|..+......++.+.  ...++..++...+.+.|+.....    +| ...         ...+.|+++.+.+.
T Consensus       294 ~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~----~~-~~~---------~~~~~g~~~~~~~~  354 (413)
T cd00610         294 GNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEK----HP-LVG---------DVRGRGLMIGIELV  354 (413)
T ss_pred             cCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh----CC-cEE---------EeecCceEEEEEEe
Confidence            45655555666666553  23456666666666666543210    11 000         01346889999884

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=98.12  E-value=2.5e-05  Score=72.69  Aligned_cols=106  Identities=21%  Similarity=0.176  Sum_probs=78.8

Q ss_pred             CccccCCEEEEecCCCCC-----------CCcCccc-------CCCcEEEecccccccCCcccceeEEEecChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSP-----------VLSRPLE-------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-----------~~~~pl~-------~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~   62 (223)
                      +|+++|++|+.|.+..-.           +.-+++.       -.+|+++.|++|.+.+.   +||+++.+++++.++++
T Consensus       206 lA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~---~GG~i~t~D~eL~~~~r  282 (460)
T PRK13237        206 LCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN---IGGFLAMNDEELFDEAK  282 (460)
T ss_pred             HHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC---CceEEEECCHHHHHHHH
Confidence            479999999999996433           3334432       36999999999999975   49999999999998887


Q ss_pred             HHHHhc-CC----CCChHhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHhcCC
Q 027424           63 FLQNAE-GS----GLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        63 ~~~~~~-g~----~~sp~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .+.-.+ |.    .++..|...+..+|+..  ...++...++++.|++.|++..
T Consensus       283 ~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~G  336 (460)
T PRK13237        283 ELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAAG  336 (460)
T ss_pred             HhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHCC
Confidence            764332 32    35556666677777753  3556777889999999998764

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.12  E-value=6.4e-05  Score=67.65  Aligned_cols=182  Identities=21%  Similarity=0.236  Sum_probs=113.0

Q ss_pred             CccccCCEEEEecCCCC-----CCCcCcccCCCcEEEecccccccCCcccceeEEEecCh----------h----HHHHH
Q 027424            1 MAHAHGALLLVDNSIMS-----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE----------R----LAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-----~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~----------~----~~~~l   61 (223)
                      ||.+.|+.+++|-++-|     .+..+|+++ +|||...+||.+-|+-   ||++.-+..          +    +.+++
T Consensus       212 Iad~~gA~Lm~DMAHISgLVAA~vipsPFey-~DiVTTTTHKsLRGPR---g~mIFyRkGvk~~~~k~g~~i~ydlE~kI  287 (477)
T KOG2467|consen  212 IADKVGAYLMADMAHISGLVAAGVIPSPFEY-CDIVTTTTHKSLRGPR---GAMIFYRKGVKSIKPKQGKEILYDLEDKI  287 (477)
T ss_pred             HHHhcCceeehhhhhHHHHHhcccCCCcccc-cceeeccccccccCCc---ceeEEEeccCCcCCCCCCCcceechhhhh
Confidence            57889999999999754     457899995 9999999999999995   777765431          1    22233


Q ss_pred             HHH--HHhcCCCCChH--hHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           62 YFL--QNAEGSGLAPF--DCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        62 ~~~--~~~~g~~~sp~--da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                      .+.  ....|   .|.  ...-+.-+|+.     +....++..+||.++++.|.+...  ++.--|-   .         
T Consensus       288 NfaVFP~lQG---GPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy--~lvtgGT---D---------  350 (477)
T KOG2467|consen  288 NFAVFPGLQG---GPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRGY--KLVTGGT---D---------  350 (477)
T ss_pred             hhhccccccC---CCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCc--eEecCCc---c---------
Confidence            221  12222   232  12223334443     567789999999999999988763  2221111   1         


Q ss_pred             CCCCeeEEEEeC----CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHH
Q 027424          133 KGAGSVLSFLTG----SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN  208 (223)
Q Consensus       133 ~g~ggl~sf~~~----~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~  208 (223)
                         .-|+-+++.    +-..+++.++.+.+-....+..|..|-+.+-.            .+.| +|.+.--..+-||.+
T Consensus       351 ---nHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgG------------iRiG-tPAmTsRG~~e~df~  414 (477)
T KOG2467|consen  351 ---NHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGG------------IRIG-TPAMTSRGFGEEDFE  414 (477)
T ss_pred             ---ceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCc------------eecc-chhhcccCccHHHHH
Confidence               235555551    34678899999988777777766666553211            1122 233333345566777


Q ss_pred             HHHHHHHHHHh
Q 027424          209 DLISDLDKALR  219 (223)
Q Consensus       209 dL~~dl~~Al~  219 (223)
                      .+.+=|.+|.+
T Consensus       415 ~v~~fi~~av~  425 (477)
T KOG2467|consen  415 KVADFIDRAVK  425 (477)
T ss_pred             HHHHHHHHHHH
Confidence            77777776654

>PRK09082 methionine aminotransferase; Validated

Probab=98.11  E-value=0.00013  Score=66.08  Aligned_cols=106  Identities=11%  Similarity=-0.018  Sum_probs=62.8

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++--.+     ..+..+    .-.|++.|++|.++..|..+|.++ + ++++.+.+.........+
T Consensus       191 ~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv-~-~~~l~~~~~~~~~~~~~~  268 (386)
T PRK09082        191 LIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCV-A-PAALSAEFRKVHQYNTFT  268 (386)
T ss_pred             HHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhh-C-CHHHHHHHHHHHhhhcCC
Confidence            47899999999999742111     111111    235899999999987777776644 4 456766666655433333


Q ss_pred             CChHhHHHHHhcHH---H-HHHHHHHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVK---T-MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~---t-l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .++.....+..-++   . +....+...++...+.+.|+++
T Consensus       269 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  309 (386)
T PRK09082        269 VNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS  309 (386)
T ss_pred             CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44433333333332   2 2222345567777788888874

>PTZ00376 aspartate aminotransferase; Provisional

Probab=98.11  E-value=7.9e-05  Score=68.03  Aligned_cols=170  Identities=12%  Similarity=0.077  Sum_probs=94.1

Q ss_pred             CccccCCEEEEecCCCCCCCcC------cc---cCCCc--EEEecccccccCCcccceeEEE-ecChhHHHHH----HHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR------PL---ELGAD--IVMHSATKFIAGHSDVMAGVLA-VKGERLAKEL----YFL   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~------pl---~~GAD--ivv~S~tK~l~G~~d~~~G~v~-~~~~~~~~~l----~~~   64 (223)
                      +|++||+++|+|+++..-....      ++   ....|  |++.|+||.++-.|..+|.+++ ..++++.+++    ...
T Consensus       204 ~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~  283 (404)
T PTZ00376        204 VMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLI  283 (404)
T ss_pred             HHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHH
Confidence            4788999999999985322111      11   11112  8899999999977889988653 3555544433    222


Q ss_pred             HHhcCCCCChHhHHHHHhcHHH----------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCC
Q 027424           65 QNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  134 (223)
Q Consensus        65 ~~~~g~~~sp~da~ll~~~l~t----------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g  134 (223)
                      ......+.++...+.+...++.          +....++..++...+.+.|+++..-..+.+.               ..
T Consensus       284 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~---------------~p  348 (404)
T PTZ00376        284 IRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHI---------------IN  348 (404)
T ss_pred             HhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc---------------cc
Confidence            2222223344444444444432          1111245567777788888876311011110               11


Q ss_pred             CCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec---CCCHHHHH
Q 027424          135 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLI  211 (223)
Q Consensus       135 ~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG---lEd~~dL~  211 (223)
                      .||++.+.--+.+.++++++.-+++-             .|                   .+  |+|+|   -|+.+.++
T Consensus       349 ~gg~f~~~~~~~~~~~~L~~~~~v~v-------------~p-------------------~~--Ris~~~~~~~~~~~~~  394 (404)
T PTZ00376        349 QIGMFSFTGLTKEQVERLIEKYHIYL-------------LD-------------------NG--RISVAGLTSKNVDYVA  394 (404)
T ss_pred             CceEEEecCCCHHHHHHHHHhCCEee-------------cC-------------------CC--eEEEeccCHHhHHHHH
Confidence            56776654334555666665544431             11                   12  99997   44577888


Q ss_pred             HHHHHHHh
Q 027424          212 SDLDKALR  219 (223)
Q Consensus       212 ~dl~~Al~  219 (223)
                      +.|.+.+.
T Consensus       395 ~~l~~~~~  402 (404)
T PTZ00376        395 EAIHDVVR  402 (404)
T ss_pred             HHHHHHHh
Confidence            88887765

>PLN02409 serine--glyoxylate aminotransaminase

Probab=98.11  E-value=0.00018  Score=65.78  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=62.0

Q ss_pred             ccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH------------HH--
Q 027424            2 AHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL------------QN--   66 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~------------~~--   66 (223)
                      ||++|++++||.+.+.+. ..+.-++|+|+++.|.+|+++|+.  -.|+++.++ +..+++...            ..  
T Consensus       165 ~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~--G~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
T PLN02409        165 CAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPT--GLGIVCASP-KALEASKTAKSPRVFFDWADYLKFY  241 (401)
T ss_pred             hhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCC--CcceeEECH-HHHHHHhcCCCCCeecCHHHHHHHH
Confidence            789999999999976432 233445799999999999998753  156666654 444443210            00  


Q ss_pred             hcC---CCCChH-hHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcC
Q 027424           67 AEG---SGLAPF-DCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        67 ~~g---~~~sp~-da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~  108 (223)
                      ..|   ....+. ..+.+..+++.+     ..+.+++.+.+..+.++|++.
T Consensus       242 ~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~  292 (401)
T PLN02409        242 KLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW  292 (401)
T ss_pred             hcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            112   112222 233444555543     333466667777777777765

>PLN02822 serine palmitoyltransferase

Probab=98.11  E-value=9.2e-05  Score=69.57  Aligned_cols=105  Identities=15%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             CccccCCEEEEecCCCCCCCc----------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--Hhc
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--~~~   68 (223)
                      +|++||+++++|++++-..+-          +.-....||++.|++|.++.    .||++++ ++++.+.++...  ..+
T Consensus       270 l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~----~GG~i~g-~~~ii~~~~~~~~~~~f  344 (481)
T PLN02822        270 LKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALAT----EGGFCTG-SARVVDHQRLSSSGYVF  344 (481)
T ss_pred             HHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhh----CCeEEEc-CHHHHHHHHhcCCceee
Confidence            478999999999998633211          00011468999999999983    3577764 455655544221  123


Q ss_pred             CCCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCC
Q 027424           69 GSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~  110 (223)
                      ++.++|..+...+.+|+.+   ....++..++...+.+.|++.++
T Consensus       345 sa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g  389 (481)
T PLN02822        345 SASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPG  389 (481)
T ss_pred             ccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3344565555555555544   33557778888888888887543

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=98.10  E-value=9.6e-05  Score=67.25  Aligned_cols=106  Identities=12%  Similarity=0.078  Sum_probs=75.5

Q ss_pred             CccccCCEEEEecCCCC--CCCcCcccCCCcEEEecccc--cc-cCCcccceeEEEecChhHHHHHHHHHHh--------
Q 027424            1 MAHAHGALLLVDNSIMS--PVLSRPLELGADIVMHSATK--FI-AGHSDVMAGVLAVKGERLAKELYFLQNA--------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s--~~~~~pl~~GADivv~S~tK--~l-~G~~d~~~G~v~~~~~~~~~~l~~~~~~--------   67 (223)
                      +|+++|++||+|++.+-  .+.-+++..-.|+.+-|+++  .+ .|+   -||+++++++++.++++.++..        
T Consensus       141 la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l~~g~---~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~  217 (376)
T TIGR02379       141 LANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNYTSGG---EGGALLINDQAFIERAEIIREKGTNRSQFF  217 (376)
T ss_pred             HHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcCcccC---CceEEEECCHHHHHHHHHHHHhCCCCcccc
Confidence            47899999999999643  34344443334888887644  33 343   2788888888888887765531        


Q ss_pred             -----------cCC--CCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           68 -----------EGS--GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        68 -----------~g~--~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                                 .|.  -++...|.+++..|+.+....++..+++....+.|++.+
T Consensus       218 ~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~  272 (376)
T TIGR02379       218 RGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLATWQLYQDALKPLE  272 (376)
T ss_pred             ccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Confidence                       111  134556777888899999999999999999999998765

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=98.10  E-value=0.0003  Score=62.54  Aligned_cols=103  Identities=22%  Similarity=0.260  Sum_probs=63.7

Q ss_pred             ccccCCEEEEecCCCCCCCcCcc-cC-CCc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhH
Q 027424            2 AHAHGALLLVDNSIMSPVLSRPL-EL-GAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC   77 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~pl-~~-GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da   77 (223)
                      |+++|++||+|+++.......++ .+ .-|  |++.|+||.++-.|..+|.++ . ++++.+.+.......  .+++...
T Consensus       153 ~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v-~-~~~l~~~~~~~~~~~--~~~~~~~  228 (330)
T PRK05664        153 LAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVL-A-EPALLRALAELLGPW--TVSGPTR  228 (330)
T ss_pred             HHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcceEEEE-e-CHHHHHHHHHhcCCC--CCCHHHH
Confidence            56789999999998532211111 11 112  899999999987888887655 4 456766665543322  3455444


Q ss_pred             HHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcC
Q 027424           78 WICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        78 ~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~  108 (223)
                      +.+...|+..   ....++..++...+.+.|+++
T Consensus       229 ~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  262 (330)
T PRK05664        229 WLAQAALADTPWQRRQRERLLAASQRLAALLRRH  262 (330)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            5555555432   222355556777888888876

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=98.09  E-value=6.9e-05  Score=67.67  Aligned_cols=58  Identities=40%  Similarity=0.482  Sum_probs=40.6

Q ss_pred             CccccCCEEEEecCCCCC-CCcCcccCCCcEEEecccccccCC--cccceeEEEecChhHHH
Q 027424            1 MAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGH--SDVMAGVLAVKGERLAK   59 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-~~~~pl~~GADivv~S~tK~l~G~--~d~~~G~v~~~~~~~~~   59 (223)
                      +||++|++++||.+++.. ...++-++|+|+++.|++|++..+  |--.+|++..++ ++.+
T Consensus       184 la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~-~~~~  244 (398)
T cd00613         184 IAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKK-ELVR  244 (398)
T ss_pred             HHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccCCCCCCCCCceeEEEEhh-hhHh
Confidence            489999999999986542 445666789999999999998211  123466776554 4433

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK08636 aspartate aminotransferase; Provisional

Probab=98.09  E-value=0.00038  Score=63.45  Aligned_cols=106  Identities=14%  Similarity=0.107  Sum_probs=60.2

Q ss_pred             CccccCCEEEEecCCCCCCCc----Cc---ccCCCc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC-
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RP---LELGAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~p---l~~GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~-   70 (223)
                      +|+++++++|+|+.++.-...    .+   ++...|  |++.|+||.++..|..+|.++ . ++++.+.+......... 
T Consensus       203 ~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv-~-~~~li~~~~~~~~~~~~~  280 (403)
T PRK08636        203 LAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVV-G-NKKLVGALKKIKSWLDYG  280 (403)
T ss_pred             HHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeee-C-CHHHHHHHHHHHHHhccc
Confidence            478999999999997532111    11   221224  447899999987788887644 4 55676666655443221 


Q ss_pred             CCChH--hHHHHHhcHHHHHHHH-HHHHhHHHHHHHHHhcC
Q 027424           71 GLAPF--DCWICLRGVKTMALRV-EKQQDNAQKIAEFLASH  108 (223)
Q Consensus        71 ~~sp~--da~ll~~~l~tl~~R~-~~~~~na~~la~~L~~~  108 (223)
                      ..++.  .+..++.+-+....++ +...++...+.+.|+.+
T Consensus       281 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (403)
T PRK08636        281 MFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANA  321 (403)
T ss_pred             CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            22231  1222222223333333 44566667788888876

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=98.06  E-value=0.00014  Score=64.98  Aligned_cols=101  Identities=18%  Similarity=0.159  Sum_probs=59.8

Q ss_pred             cCCEEEEecCCCCCCCcC----ccc-CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHH
Q 027424            5 HGALLLVDNSIMSPVLSR----PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI   79 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~~----pl~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~l   79 (223)
                      +++++|+|+++.. +...    ++. ..--|++.|+|| ++..|..+|. ++. ++++.+++...+.  ...++....+.
T Consensus       182 ~~~~ii~De~y~~-~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~-~i~-~~~~i~~~~~~~~--~~~~~~~~q~~  255 (356)
T PRK04870        182 APGLVVVDEAYQP-FAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGY-LAG-HPAWIAELDKVRP--PYNVNVLTQAT  255 (356)
T ss_pred             CCCEEEEECCchh-hcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhh-hhC-CHHHHHHHHHccC--CCcCCHHHHHH
Confidence            3789999999742 2111    111 122489999999 6666777765 444 4566666654432  22344433333


Q ss_pred             HHhc---HHHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           80 CLRG---VKTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        80 l~~~---l~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ....   .+.+....++..++...+.+.|+..|++
T Consensus       256 a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  290 (356)
T PRK04870        256 ALFALEHVDVLDAQAAQLRAERTRLAAALAALPGV  290 (356)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            3333   3344445567778888888899887765

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.06  E-value=6.9e-06  Score=74.07  Aligned_cols=105  Identities=22%  Similarity=0.276  Sum_probs=46.0

Q ss_pred             CccccCCEEEEecCCCC------------CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc
Q 027424            1 MAHAHGALLLVDNSIMS------------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------------~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~   68 (223)
                      +||+||+|+++|-.-|.            |-.+..++.|||+|+.|.-|.++|+   |+|.++++ +++.++++...-.-
T Consensus       165 la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP---QaGiI~Gk-k~lI~~lk~~pl~R  240 (367)
T PF03841_consen  165 LAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP---QAGIIVGK-KELIEKLKKHPLGR  240 (367)
T ss_dssp             HHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS----S-EEEEEE-HHHHHHHHHHHHTT
T ss_pred             HHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC---CeEEEEeC-HHHHHHHhhCCCcc
Confidence            47899999999987521            3345678899999999999999998   79988765 56777766432111


Q ss_pred             CCCCChHhHHHHHhcHHHH----------------HHHHHHHHhHHHHHHHHHhcCC
Q 027424           69 GSGLAPFDCWICLRGVKTM----------------ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~tl----------------~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ..-.+...-..+...|+.+                ....+...+.|++|++.|+...
T Consensus       241 alrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~~  297 (367)
T PF03841_consen  241 ALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAAL  297 (367)
T ss_dssp             T-B--HHHHHHHHHHHHH---------------------------------------
T ss_pred             eEeeCHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence            1122333333444444432                1222445555666666666544

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=98.06  E-value=4.3e-05  Score=69.38  Aligned_cols=106  Identities=20%  Similarity=0.209  Sum_probs=75.1

Q ss_pred             CccccCCEEEEecCCCCCCCcC---cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC--------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG--------   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~---pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g--------   69 (223)
                      +|+++|++||+|++++.+...+   .-..|.++..-|.+|.+.+.   .||+++.+++++.++++.++. .|        
T Consensus       143 ~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g---~GG~v~~~~~~~~~~~~~~~~-~G~~~~~~~~  218 (379)
T PRK11658        143 IGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCA---EGGLVVTDDDELADRLRSLKF-HGLGVDAFDR  218 (379)
T ss_pred             HHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCccc---CceEEEECCHHHHHHHHHHHH-cCCCcchhhh
Confidence            4789999999999986543332   23456655555566877753   489888887888777665431 12        


Q ss_pred             -----------------CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCC
Q 027424           70 -----------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        70 -----------------~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~  110 (223)
                                       ..++...+.+.+..++.+....++..+++..+.+.|++.|.
T Consensus       219 ~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~  276 (379)
T PRK11658        219 QTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPF  276 (379)
T ss_pred             hcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence                             11444567777777888888889999999999999988773

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=98.05  E-value=0.00014  Score=68.24  Aligned_cols=54  Identities=26%  Similarity=0.400  Sum_probs=39.8

Q ss_pred             CccccCCEEEEecCCCCC-C-CcCcccCCCcEEEecccccccCCcc---cceeEEEecC
Q 027424            1 MAHAHGALLLVDNSIMSP-V-LSRPLELGADIVMHSATKFIAGHSD---VMAGVLAVKG   54 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-~-~~~pl~~GADivv~S~tK~l~G~~d---~~~G~v~~~~   54 (223)
                      +||++|++++||.+...+ + ..+|-++|||+++-|.||+++++-.   --+|.+.+++
T Consensus       233 ~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~  291 (481)
T PRK04366        233 IVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKE  291 (481)
T ss_pred             HHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehh
Confidence            478999999999996422 1 2478899999999999999875521   2256666654

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=98.02  E-value=3.7e-05  Score=71.42  Aligned_cols=105  Identities=17%  Similarity=0.149  Sum_probs=76.3

Q ss_pred             CccccCCEEEEecCCCC--C---------CCcCcc-------cCCCcEEEecccccccCCcccceeEEEecChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMS--P---------VLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s--~---------~~~~pl-------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~   62 (223)
                      +|+++|++|+.|.+..-  -         +..+|+       -.+||.++.|+.|..+++   +||+++.+++++.++++
T Consensus       199 lA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~---~GG~l~~~d~~l~~k~r  275 (450)
T TIGR02618       199 LCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN---IGGFLCMNDDEMFQSAK  275 (450)
T ss_pred             HHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC---CceEEEeCCHHHHHHHH
Confidence            47999999999998533  1         222344       237999999999999977   59999889999988887


Q ss_pred             HHHHhcCC-----CCChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHhcC
Q 027424           63 FLQNAEGS-----GLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        63 ~~~~~~g~-----~~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~~~  108 (223)
                      .....++.     .++..+-..+..+|+....|  .+...++++.|++-|++.
T Consensus       276 ~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~  328 (450)
T TIGR02618       276 ELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA  328 (450)
T ss_pred             HHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC
Confidence            76544422     34555555566677765444  355566799999999987

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=98.02  E-value=0.00023  Score=64.33  Aligned_cols=178  Identities=22%  Similarity=0.239  Sum_probs=101.5

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCccc-CCCc--EEEecccccccCCcccceeEEEecChhHHHH-HHHHHHhcC
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLE-LGAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~-~GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~-l~~~~~~~g   69 (223)
                      ||.+||+.||.|+=|+--+       .+..+. ..||  |++.|.||+++-.|...+ .++..++++.++ ++.+....+
T Consensus       186 lc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a-~~Ii~n~~lr~~~~~~l~~~~~  264 (388)
T COG1168         186 LCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCA-YIIISNRELRAKFLKRLKRNGL  264 (388)
T ss_pred             HHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhhe-eEEecCHHHHHHHHHHHHHhcC
Confidence            5889999999999985321       111111 2344  888999999997665444 444555555433 333333333


Q ss_pred             CCCChHhHHHHHh----cHHHHHHHHHHHHhHHHHHHHHHhcC-CCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-
Q 027424           70 SGLAPFDCWICLR----GVKTMALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-  143 (223)
Q Consensus        70 ~~~sp~da~ll~~----~l~tl~~R~~~~~~na~~la~~L~~~-p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-  143 (223)
                      ...|.+.--....    |-+-|..-.+-...|-..++++|+++ |.| +|.-|-                .--++-+++ 
T Consensus       265 ~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v-~v~~p~----------------gTYL~WLD~r  327 (388)
T COG1168         265 HGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGV-KVTEPQ----------------GTYLAWLDCR  327 (388)
T ss_pred             CCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCc-EEecCC----------------Cceeeeeecc
Confidence            3344432111111    22223444466678889999999987 676 777661                223444454 


Q ss_pred             --C-CH-HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC--HHHHHHHHHHH
Q 027424          144 --G-SL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED--VNDLISDLDKA  217 (223)
Q Consensus       144 --~-~~-~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd--~~dL~~dl~~A  217 (223)
                        + +. +..+-+++..++.   .|.|..+-    +               .  ..|.+|+-+|.--  .++=++-|.+|
T Consensus       328 ~l~l~d~~l~~~ll~~akVa---l~~G~~FG----~---------------~--g~gf~RlN~acpr~~L~eal~ri~~a  383 (388)
T COG1168         328 ELGLDDSELAEFLLEEAKVA---LSPGSTFG----E---------------E--GSGFVRLNFACPRAILEEALERLKRA  383 (388)
T ss_pred             ccCCChHHHHHHHHHhhcEe---ccCCCccC----c---------------C--CCceEEEecCCCHHHHHHHHHHHHHH
Confidence              1 33 4444455666653   34442211    0               0  3589999999764  46667777777


Q ss_pred             Hhc
Q 027424          218 LRT  220 (223)
Q Consensus       218 l~~  220 (223)
                      |+.
T Consensus       384 l~~  386 (388)
T COG1168         384 LKK  386 (388)
T ss_pred             Hhc
Confidence            765

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=98.02  E-value=6e-05  Score=69.34  Aligned_cols=171  Identities=14%  Similarity=0.187  Sum_probs=95.4

Q ss_pred             CccccCCEEEEecCCCCCCCcCc-----ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p-----l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|+.+.. +....     ...+....+.+++|.++| +-.+|+++ .+ +++.+.+.........+.+|.
T Consensus       216 l~~~~g~llI~DEv~tg-~gr~G~~~a~~~~~~~pdi~t~~K~l~~-G~piga~~-~~-~~~~~~~~~~~~~~t~~~~p~  291 (408)
T PRK04612        216 LCDQHDALLVLDEIQCG-MGRTGTLFAHWQEQVTPDIVTLAKALGG-GFPIGAML-AG-PKVAETMQFGAHGTTFGGNPL  291 (408)
T ss_pred             HHHHcCCEEEEeccccC-CCcCCchhhhhhcCCCCCEEEEcchhcC-CCceEEEE-EC-HHHHhhhcCCCcCCCCCCCHH
Confidence            47899999999999742 22111     123566677899999985 45566544 44 345444432111111224687


Q ss_pred             hHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc----CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC--CHH
Q 027424           76 DCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLA  147 (223)
Q Consensus        76 da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~--~~~  147 (223)
                      .+......|+.+..  ..++..+....+.+.|++    ++.|..|                  +|.|.|+.+++.  ..+
T Consensus       292 ~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~v------------------rg~Gl~~~i~~~~~~~~  353 (408)
T PRK04612        292 AAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQV------------------RGRGLMLGAVLAPAHAG  353 (408)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCeeee------------------eccceEEEEEecCchhh
Confidence            78777777877642  223333333344343432    3333332                  478999999983  233


Q ss_pred             HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHhc
Q 027424          148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       148 ~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~Al~~  220 (223)
                      .+..|.+.+.-  .|.-+        .|.                 .++.||+.    |.-|+++..++.|+++|+.
T Consensus       354 ~a~~i~~~l~~--~Gvlv--------~~~-----------------g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~  403 (408)
T PRK04612        354 QAGAILDLAAE--HGLLL--------LQA-----------------GPDVLRFVPALNLTDAELADGLARLRLALAD  403 (408)
T ss_pred             HHHHHHHHHHH--CCeEE--------eeC-----------------CCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence            45555544321  11000        010                 12456665    4556788889999888864

>PLN02955 8-amino-7-oxononanoate synthase

Probab=98.02  E-value=0.00019  Score=67.32  Aligned_cols=166  Identities=15%  Similarity=0.197  Sum_probs=96.9

Q ss_pred             CccccCCEEEEecCCCCCCC-c--C------cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-S--R------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~--~------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g   69 (223)
                      +++++|+.|+||++++.... .  +      .+.--.||++.|++|.++..    ||+++++ +++.+.++....  .++
T Consensus       274 L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~----GGfi~gs-~~~~~~l~~~~~~~ifS  348 (476)
T PLN02955        274 LRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCH----GGFIACS-KKWKQLIQSRGRSFIFS  348 (476)
T ss_pred             HHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhcc----CceeecH-HHHHHHHHHhCCCCeec
Confidence            46789999999999975432 1  0      11224689999999999854    7887654 455555543221  234


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      ..++|-.+.-.+.+++-+   ..|.++..+|...+.+. .           |++.             ...++.+.+++.
T Consensus       349 talpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~-~-----------G~~~-------------~sPI~pI~ig~~  403 (476)
T PLN02955        349 TAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL-S-----------GVDI-------------SSPIISLVVGNQ  403 (476)
T ss_pred             ccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-c-----------CCCC-------------CCCEEEEEeCCH
Confidence            455665454555555544   34556666666655441 1           2210             267888888887


Q ss_pred             HHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 027424          147 ALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE----DVNDLISDLDKALR  219 (223)
Q Consensus       147 ~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE----d~~dL~~dl~~Al~  219 (223)
                      ..+..+.+.|   +++.         +.+..|+..              .....+||++--.    |++.|++.|.+..+
T Consensus       404 ~~a~~~~~~L~~~Gi~v---------~~i~yPtVP--------------~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~  460 (476)
T PLN02955        404 EKALKASRYLLKSGFHV---------MAIRPPTVP--------------PNSCRLRVTLSAAHTTEDVKKLITALSSCLD  460 (476)
T ss_pred             HHHHHHHHHHHHCCCEE---------EEECCCCCC--------------CCCceEEEeeCCCCCHHHHHHHHHHHHHHHh
Confidence            7666665554   3332         223334320              1235699999754    45555555555444

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=98.01  E-value=7.7e-05  Score=67.99  Aligned_cols=169  Identities=13%  Similarity=0.225  Sum_probs=94.0

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++ +.+.       ..-.....|+++-|  |.++|..--+|+ ++.+ +++.+.+.........+.+
T Consensus       215 l~~~~~~lli~DEv~-~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig~-v~~~-~~i~~~~~~~~~~~t~~~~  289 (401)
T TIGR01885       215 LCTKHNVLLIADEIQ-TGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYPVSA-VLAD-DDVMLTIKPGEHGSTYGGN  289 (401)
T ss_pred             HHHHcCCEEEEechh-hCCCccchhhHHhhcCCCCCEEEee--ccccCCCCCcEE-EEEc-HHHHhhccCCCCCCCCCCC
Confidence            478999999999996 3221       11122357888754  999864344544 4444 5565544321111111235


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhcCC--CeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH---
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHP--RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---  146 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~~p--~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~---  146 (223)
                      |..+......|+.+..  ..++..+.+..+.+.|++.+  .+..                  .+|.|.|+.++++..   
T Consensus       290 p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~------------------~~g~g~~~~i~~~~~~~~  351 (401)
T TIGR01885       290 PLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLPKPIITE------------------VRGRGLLNAIVIDESKTG  351 (401)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhccCCceeE------------------EeecCeeEEEEeccCcch
Confidence            7777777777777643  22445555566666666542  1111                  135789999888432   


Q ss_pred             HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHh
Q 027424          147 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDKALR  219 (223)
Q Consensus       147 ~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~Al~  219 (223)
                      ..+.+|.+.+.  ..++-+        .|                 ..++.+||+    +--|+.+.+++-|+++|+
T Consensus       352 ~~~~~l~~~l~--~~Gv~v--------~~-----------------~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l~  401 (401)
T TIGR01885       352 RTAWDLCLKLK--EKGLLA--------KP-----------------THGNIIRLAPPLVITEEQLDEGLEIIKKVID  401 (401)
T ss_pred             hHHHHHHHHHH--hCCEEE--------Ee-----------------cCCCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence            24556665552  122111        11                 024578888    455567777777777663

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=98.01  E-value=0.00022  Score=64.72  Aligned_cols=175  Identities=15%  Similarity=0.127  Sum_probs=93.3

Q ss_pred             cccCCEEEEecCCCCCCCcCcccC-CCcEEEecccccccC-CcccceeEEEecChhHHHHHHHH----------------
Q 027424            3 HAHGALLLVDNSIMSPVLSRPLEL-GADIVMHSATKFIAG-HSDVMAGVLAVKGERLAKELYFL----------------   64 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~~~~~pl~~-GADivv~S~tK~l~G-~~d~~~G~v~~~~~~~~~~l~~~----------------   64 (223)
                      |++|++++||.+-+-+  ..|++. .+|+++-|.+|+++| +|   .|++..+++ ..+++...                
T Consensus       161 ~~~g~~~vVDa~qs~G--~~pidv~~iD~~~~s~~K~l~~P~G---~g~l~v~~~-~~~~~~p~~~~~~~~~~~~~~~~~  234 (378)
T PRK03080        161 ADREGLTICDATSAAF--ALPLDWSKLDVYTFSWQKVLGGEGG---HGMAILSPR-AVERLESYTPARPIPKFFRLTKGG  234 (378)
T ss_pred             ccCCCeEEEecccccc--cCCCCHHHCcEEEEehhhhCCCCCc---eEEEEECHH-HHHhhhcccCCCCCchhheeccch
Confidence            5789999999986443  233332 379999999999998 43   566767654 33333210                


Q ss_pred             ---H-Hh-cCC-CCCh-HhHHHHHhcHHHHH------HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhh
Q 027424           65 ---Q-NA-EGS-GLAP-FDCWICLRGVKTMA------LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  131 (223)
Q Consensus        65 ---~-~~-~g~-~~sp-~da~ll~~~l~tl~------~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~  131 (223)
                         . .. .|. ...+ ...+.+..+|+.+.      .+.++..+.+..+.++|++.+.+ ++.-+    .|.       
T Consensus       235 ~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~-~~~~~----~~~-------  302 (378)
T PRK03080        235 KAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWA-TPLVA----DPA-------  302 (378)
T ss_pred             HHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCc-ccccC----Ccc-------
Confidence               0 00 111 1222 22333455666542      33456666777777888877643 22211    111       


Q ss_pred             hCCCCeeEEEEeCC---HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC---
Q 027424          132 AKGAGSVLSFLTGS---LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE---  205 (223)
Q Consensus       132 ~~g~ggl~sf~~~~---~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE---  205 (223)
                       ...+++++|.+.+   ... .+++..+.--.+.+..|+..                       -.++.+|+|.+.-   
T Consensus       303 -~~s~~i~~~~~~~~~~~~~-~~~~~~l~~~~i~v~~g~~~-----------------------~~~~~vRis~~~~~t~  357 (378)
T PRK03080        303 -TRSNTSVTLDFVDAQAAVD-AAAVAKLLRENGAVDIEPYR-----------------------DAPNGLRIWCGPTVEP  357 (378)
T ss_pred             -ccCccEEEEEcCCchHHHH-HHHHHHHHHcCCeecccccc-----------------------CCCCcEEEecCCCCCH
Confidence             1135689998754   111 12332221001111222210                       0236799999964   


Q ss_pred             -CHHHHHHHHHHHHhc
Q 027424          206 -DVNDLISDLDKALRT  220 (223)
Q Consensus       206 -d~~dL~~dl~~Al~~  220 (223)
                       |++.|++-|+++++.
T Consensus       358 ~di~~l~~al~~~~~~  373 (378)
T PRK03080        358 ADVEALTPWLDWAFER  373 (378)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence             667777777777663

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=98.00  E-value=9.7e-05  Score=67.28  Aligned_cols=168  Identities=12%  Similarity=0.165  Sum_probs=93.1

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++.. +.       +.......|+++  ++|.++|.+-.+|+ ++++ +++.+.+...........+
T Consensus       215 l~~~~g~lli~DEv~~g-~g~~g~~~~~~~~~~~pdi~~--~sK~lg~gg~~ig~-~~~~-~~i~~~~~~~~~~~t~~~~  289 (396)
T PRK04073        215 LCKEENVLFIADEIQTG-LGRTGKLFACDWDNVTPDMYI--LGKALGGGVFPISC-VAAN-RDILGVFTPGSHGSTFGGN  289 (396)
T ss_pred             HHHHcCCEEEEecchhC-CCcCcHHHHhhhcCCCCCEEE--ecccccCCCCcceE-EEEc-HHHHhhhcCCCCCCCCCCC
Confidence            47899999999999742 21       112223467665  68999976566655 4454 4555544321111112246


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHH
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH  151 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~  151 (223)
                      |..+...+..|+.+..  -.++..+....+.+.|++.      .+|...          ..++.|.++.+++..  .++.
T Consensus       290 ~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l------~~~~i~----------~~~~~g~~~~~~~~~--~~~~  351 (396)
T PRK04073        290 PLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEI------DNPMIK----------EVRGRGLFIGVELNE--PARP  351 (396)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh------cCCccc----------ceecceEEEEEEecc--hHHH
Confidence            7777777777765521  1244444555566666542      123221          123568888888842  2344


Q ss_pred             HHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHH
Q 027424          152 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDKAL  218 (223)
Q Consensus       152 f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~Al  218 (223)
                      |.+.|.  ..++-        +.|                 ..++.|||+    +--|+.+.+++-|+++|
T Consensus       352 ~~~~l~--~~Gv~--------~~~-----------------~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        352 YCEALK--EEGLL--------CKE-----------------THETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             HHHHHH--HCCeE--------Eec-----------------CCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence            444431  11111        111                 023679998    55677888888888776

>PRK09105 putative aminotransferase; Provisional

Probab=98.00  E-value=0.00021  Score=64.66  Aligned_cols=99  Identities=16%  Similarity=0.192  Sum_probs=57.3

Q ss_pred             ccCCEEEEecCCCCCCCcCc--cc---CCCc-EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhH
Q 027424            4 AHGALLLVDNSIMSPVLSRP--LE---LGAD-IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC   77 (223)
Q Consensus         4 ~~g~~lvVDnT~~s~~~~~p--l~---~GAD-ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da   77 (223)
                      ++|+++|+|+++.. +...|  ..   .+.+ |++.|++|.++..|..+|.++ . ++++.+.+...   .....+....
T Consensus       195 ~~~~~lIvDEaY~~-f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v-~-~~~~i~~l~~~---~~~~~~~~~~  268 (370)
T PRK09105        195 PAGSVLLVDEAYIH-FSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAA-A-RPDLLAKLARF---GHNPLPVPAA  268 (370)
T ss_pred             CCCcEEEEECchHH-hccCcchHHHHhhCCCEEEEecccHhhcCCccceeeee-c-CHHHHHHHHhc---CCCCcCHHHH
Confidence            45899999999742 21111  21   2334 778899999998888886644 4 45566655443   1112333222


Q ss_pred             HHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcC
Q 027424           78 WICLRGVKT---MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        78 ~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ......++.   +..+.++..++...+.+.|+.+
T Consensus       269 ~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  302 (370)
T PRK09105        269 AAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK  302 (370)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            333333322   2333455666777788888876

>PRK06836 aspartate aminotransferase; Provisional

Probab=98.00  E-value=0.00016  Score=65.81  Aligned_cols=102  Identities=14%  Similarity=0.119  Sum_probs=55.4

Q ss_pred             cCCEEEEecCCCCCCC----cCc-cc-CCCcEEEecccccccCCcccceeEEEecChhHHH------HHHHHHHhcCC-C
Q 027424            5 HGALLLVDNSIMSPVL----SRP-LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK------ELYFLQNAEGS-G   71 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~----~~p-l~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~------~l~~~~~~~g~-~   71 (223)
                      ||+++|+|+++.--..    ..+ ++ ..-.|++.|+||.++.+|..+|.++ .++ .+.+      .+.......+. .
T Consensus       206 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~  283 (394)
T PRK06836        206 RPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIA-VNP-EMEDADDLVAALVFANRILGFVN  283 (394)
T ss_pred             CCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEe-cCH-HHhhhHHHHHHHHHHhhcccccc
Confidence            8999999999852211    001 11 1235999999999987888876644 443 3322      11112222222 2


Q ss_pred             CChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           72 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .++.....+.+-++.- .+.++..++...+.+.|+++.
T Consensus       284 ~~~~~q~~~~~~l~~~-~~~~~~~~~r~~l~~~L~~~g  320 (394)
T PRK06836        284 APALMQRVVAKCLDAT-VDVSIYKRNRDLLYDGLTELG  320 (394)
T ss_pred             CCHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHhCC
Confidence            3443333333433321 233445556677788888773

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=97.99  E-value=5.8e-05  Score=70.14  Aligned_cols=107  Identities=20%  Similarity=0.129  Sum_probs=79.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCC--CcEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~G--ADivv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|++||+|++.+-+...+.-..|  .|+.+-|+.  |-+.. +  -||+|+++++++.++++..++.         
T Consensus       181 la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~~fSf~~~k~~~~-g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~  257 (438)
T PRK15407        181 FCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIATLSFYPAHHITM-G--EGGAVFTNDPLLKKIIESFRDWGRDCWCAPG  257 (438)
T ss_pred             HHHHCCCEEEEECccchhhhcCCeeeeccCceEEEeCCCCCCccc-c--CceEEEECCHHHHHHHHHHHHhCcccccccc
Confidence            478999999999987554332322222  399988875  54553 2  2799999998887766554321         


Q ss_pred             ----------------------------cC--CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCC
Q 027424           68 ----------------------------EG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        68 ----------------------------~g--~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~  110 (223)
                                                  .|  ..++...|.+.+..|+.+..++++..+|+..+.+.|++.|.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~  330 (438)
T PRK15407        258 CDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLED  330 (438)
T ss_pred             cccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence                                        12  13577788899999999999999999999999999998774

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=97.98  E-value=0.00013  Score=66.53  Aligned_cols=105  Identities=14%  Similarity=0.076  Sum_probs=60.6

Q ss_pred             CccccCCEEEEecCCCCCCCc---Cccc---CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVLS---RPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~---~pl~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|++++++||+|++++.++..   ....   .+-=|++.|+||+ +..|..+|. ++. ++++.+++.........+.+.
T Consensus       207 ~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~-~i~-~~~l~~~~~~~~~~~~~~~s~  283 (416)
T PRK09440        207 LARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRCGI-VIA-DEEIIEALSNMNGIISLAPGR  283 (416)
T ss_pred             HHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc-CCCcceEEE-EeC-CHHHHHHHHHHHHHhccCCCc
Confidence            367899999999999743211   1111   1112888999996 777777765 444 556777776665554444565


Q ss_pred             HhHHHHHhcHHH--HHHH----H-HHHHhHHHHHHHHHhcC
Q 027424           75 FDCWICLRGVKT--MALR----V-EKQQDNAQKIAEFLASH  108 (223)
Q Consensus        75 ~da~ll~~~l~t--l~~R----~-~~~~~na~~la~~L~~~  108 (223)
                      .....+.+.++.  +..+    + +...++...+.++|+++
T Consensus       284 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~  324 (416)
T PRK09440        284 LGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRY  324 (416)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555555543  2111    1 22233444555666655

>PRK10534 L-threonine aldolase; Provisional

Probab=97.97  E-value=6.6e-05  Score=66.35  Aligned_cols=104  Identities=17%  Similarity=0.147  Sum_probs=63.9

Q ss_pred             ccccCCEEEEecCCC--CC-C-CcC--cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh-
Q 027424            2 AHAHGALLLVDNSIM--SP-V-LSR--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP-   74 (223)
Q Consensus         2 a~~~g~~lvVDnT~~--s~-~-~~~--pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp-   74 (223)
                      |+++|++|+||+++.  .. . ...  .+..+.|.++.|+||.++.   .+||+++ .++++.+.++.++...+..++. 
T Consensus       156 ~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~---~~G~~~~-~~~~~i~~~~~~~~~~~~~~~~~  231 (333)
T PRK10534        156 TRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGT---PVGSLLV-GNRDYIKRARRWRKMTGGGMRQA  231 (333)
T ss_pred             HHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCC---cccceEE-cCHHHHHHHHHHHHHhCCchhhH
Confidence            677899999999843  10 0 011  1122468777899997663   4676665 4667777777666554433322 


Q ss_pred             -HhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           75 -FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        75 -~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                       ..+......++....++++..++...+.++|++..
T Consensus       232 ~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L~~~g  267 (333)
T PRK10534        232 GILAAAGLYALKHNVARLQEDHDNAAWLAEQLREAG  267 (333)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC
Confidence             12222333444434667777778889999999873

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=97.96  E-value=7.9e-05  Score=66.79  Aligned_cols=107  Identities=17%  Similarity=0.116  Sum_probs=61.9

Q ss_pred             CCEEEEecCCCCCCCc-Cc---cc-CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            6 GALLLVDNSIMSPVLS-RP---LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         6 g~~lvVDnT~~s~~~~-~p---l~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +++||||+++...... ..   +. ..-=||+.|+||.++-.|..+|.++ + ++++.+.+........  ++.......
T Consensus       177 ~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i-~-~~~~i~~l~~~~~~~~--v~~~~~~~a  252 (351)
T PRK01688        177 KAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTL-A-NEEVINLLLKVIAPYP--LSTPVADIA  252 (351)
T ss_pred             CcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHh-C-CHHHHHHHHhccCCCC--CCHHHHHHH
Confidence            6889999998432211 11   11 1123899999999975666776544 4 4556666654432222  232222222


Q ss_pred             HhcH-----HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           81 LRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        81 ~~~l-----~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      ...|     +.+..+.++..++...+.+.|++.+.+.. .+|
T Consensus       253 ~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~p  293 (351)
T PRK01688        253 AQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQ-VFD  293 (351)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCe-ECC
Confidence            2233     34455567777788889999998876543 345

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=97.96  E-value=0.00018  Score=64.93  Aligned_cols=171  Identities=17%  Similarity=0.193  Sum_probs=94.0

Q ss_pred             cCCEEEEecCCCCCCC---cCcccC--CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHH
Q 027424            5 HGALLLVDNSIMSPVL---SRPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI   79 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~---~~pl~~--GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~l   79 (223)
                      ++++||+|+++.....   +.++.-  .--|++.|++|.++-.|..+|.++ + ++++.+.+.......  .+++...+.
T Consensus       186 ~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v-~-~~~~~~~l~~~~~~~--~~s~~~q~~  261 (369)
T PRK08153        186 ETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAI-G-APGTIKAFDKVRNHF--GMNRIAQAA  261 (369)
T ss_pred             CCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeee-c-CHHHHHHHHHhhcCC--CCCHHHHHH
Confidence            4899999999753221   112211  112889999999986777776644 4 456666666554433  356666666


Q ss_pred             HHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-CHHHHHHHHhh
Q 027424           80 CLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVET  155 (223)
Q Consensus        80 l~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~~~~~~~f~~~  155 (223)
                      +...++.   +....++..++...+.+.|+.++ +.  .+|                ..|..+.+.+. +.+.+.+|.+.
T Consensus       262 ~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g-~~--~~p----------------~~~~f~~~~~~~~~~~a~~l~~~  322 (369)
T PRK08153        262 ALAALKDQAYLAEVVGKIAAARDRIAAIARANG-LT--PLP----------------SATNFVAIDCGRDGAFARAVLDG  322 (369)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-Cc--cCC----------------CcCcEEEEECCCCcccHHHHHHH
Confidence            5555542   22223444556666777787653 21  123                13444555553 23345566654


Q ss_pred             cCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHhcC
Q 027424          156 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-DVNDLISDLDKALRTG  221 (223)
Q Consensus       156 l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE-d~~dL~~dl~~Al~~~  221 (223)
                      +.-  .++.+.       .|...              -.++.+|+|++-+ +.+-+++-|++.++.+
T Consensus       323 l~~--~Gi~v~-------~p~~~--------------~~~~~iRis~~~~~~~~~~~~al~~~~~~~  366 (369)
T PRK08153        323 LIA--RDIFVR-------MPGVA--------------PLDRCIRVSCGPDEELDLFAEALPEALEAA  366 (369)
T ss_pred             HHH--CCeEEe-------eCCCC--------------CCCCeEEEecCCHHHHHHHHHHHHHHHHHh
Confidence            321  111110       11110              0246899999954 4677777777777643

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=97.94  E-value=0.00012  Score=65.49  Aligned_cols=110  Identities=20%  Similarity=0.238  Sum_probs=79.0

Q ss_pred             CccccCCEEEEecC-C-----CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNS-I-----MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT-~-----~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +||++|++|=+|-+ +     +......-...|+|+|.-.+||-++..    +|+|+..+.++.++.++++...|..++.
T Consensus       158 ~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~----~gAiv~gn~~~~~~a~~~rK~~Ggl~~k  233 (342)
T COG2008         158 VCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAP----VGAIVFGNRDFAKRARRWRKRAGGLMRK  233 (342)
T ss_pred             HHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcce----eeeEEEcCHHHHHHHHHHHHHhcccHhh
Confidence            48999999999987 1     111112223469999999999998865    6777777888999999998888877666


Q ss_pred             HhHHHHH----hcHHHHHHHHHHHHhH--HHHHHHHHhcCCCeeEEEcC
Q 027424           75 FDCWICL----RGVKTMALRVEKQQDN--AQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        75 ~da~ll~----~~l~tl~~R~~~~~~n--a~~la~~L~~~p~v~~V~yP  117 (223)
                        +.++.    ..|++-..|....-+|  |..||+.|++.|++ ++..|
T Consensus       234 --~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~-~~~~~  279 (342)
T COG2008         234 --ARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGV-KLAFP  279 (342)
T ss_pred             --hhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCc-eeccC
Confidence              33333    2333334555555666  99999999988887 56665

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=97.93  E-value=0.00016  Score=65.20  Aligned_cols=121  Identities=18%  Similarity=0.236  Sum_probs=72.3

Q ss_pred             CccccCCEEEEecCCCCCCCcC--cc---cCC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR--PL---ELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~--pl---~~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+.+. ++...  ++   ..|  .|++  +++|.+++ +-. .|+++.+ +++.+.+...........+
T Consensus       196 l~~~~~~~lI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~-ig~v~~~-~~~~~~~~~~~~~~t~~~~  269 (377)
T PRK02936        196 LCKKFGALLIIDEVQT-GIGRTGTLFAYEQFGLDPDIV--TVAKGLGN-GIP-VGAMIGK-KELGTAFGPGSHGSTFGGN  269 (377)
T ss_pred             HHHHcCCEEEEecccc-CCCcCchhhHHHhhCCCCcEE--EEcccccC-CCc-cEEEEEc-HHHHhhccCCCCCCCCCCC
Confidence            4789999999999973 33211  11   123  4655  69999984 434 4556554 4565544321111112357


Q ss_pred             hHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhc----CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           74 PFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        74 p~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      |..+......|+.+.  ..+++..++...+.+.|++    +|.+..|                  ++.|.++.+++..
T Consensus       270 ~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~~  329 (377)
T PRK02936        270 PLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNI------------------RGKGLMIGIECTE  329 (377)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeE------------------eecceEEEEEecc
Confidence            777777888887763  3456666777777777765    3333222                  2356788888853

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=97.92  E-value=0.00019  Score=64.20  Aligned_cols=100  Identities=14%  Similarity=0.140  Sum_probs=58.4

Q ss_pred             cCCEEEEecCCCCCCCc----Cccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHh
Q 027424            5 HGALLLVDNSIMSPVLS----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD   76 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~----~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~d   76 (223)
                      +|+++|+|+++......    .++.    .+-.|++.|+||.++.+|..+|.++ . ++++.+.+.......  ..++..
T Consensus       182 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v-~-~~~~~~~~~~~~~~~--~~~~~~  257 (359)
T PRK03158        182 SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGI-A-SEELIEKLNIARPPF--NTTRIA  257 (359)
T ss_pred             CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhc-C-CHHHHHHHHHhcCCC--CCCHHH
Confidence            58999999997432211    1111    2345889999999987777776544 4 456666665544322  345544


Q ss_pred             HHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcC
Q 027424           77 CWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        77 a~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .+.+...++.   +....++..++...+.+.|+++
T Consensus       258 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  292 (359)
T PRK03158        258 QYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY  292 (359)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            4555555542   2222233345555667777776

>PRK07505 hypothetical protein; Provisional

Probab=97.91  E-value=0.00044  Score=63.07  Aligned_cols=81  Identities=16%  Similarity=0.154  Sum_probs=46.4

Q ss_pred             CccccCCEEEEecCCCC--------CCCcCccc--C-CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--h
Q 027424            1 MAHAHGALLLVDNSIMS--------PVLSRPLE--L-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--A   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s--------~~~~~pl~--~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~   67 (223)
                      +|+++|+++|+|++++-        ++....+.  . -..|++.|++|.+++.    ||.++.+++++.+.+.....  .
T Consensus       204 l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~~~t  279 (402)
T PRK07505        204 LQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS----GGVIMLGDAEQIELILRYAGPLA  279 (402)
T ss_pred             HHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc----CeEEEeCCHHHHHHHHHhCCCce
Confidence            47899999999999631        11111111  1 1247778999999865    46665556566665543322  1


Q ss_pred             cCCCCChHhHHHHHhcHH
Q 027424           68 EGSGLAPFDCWICLRGVK   85 (223)
Q Consensus        68 ~g~~~sp~da~ll~~~l~   85 (223)
                      ++...++..+..+...++
T Consensus       280 ~~~~~~~~a~aa~~a~l~  297 (402)
T PRK07505        280 FSQSLNVAALGAILASAE  297 (402)
T ss_pred             eCCCCCHHHHHHHHHHHH
Confidence            223345555555555554

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=97.90  E-value=0.0004  Score=64.49  Aligned_cols=184  Identities=16%  Similarity=0.099  Sum_probs=102.8

Q ss_pred             Ccccc------CCEEEEecCCCCCC---CcC--cc---cCCCcEEEecccccccCCcccceeEEEecChh-HHHHHHHHH
Q 027424            1 MAHAH------GALLLVDNSIMSPV---LSR--PL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFLQ   65 (223)
Q Consensus         1 ia~~~------g~~lvVDnT~~s~~---~~~--pl---~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~-~~~~l~~~~   65 (223)
                      +|+++      |+++.||.+++.++   ...  +.   ..|||-+.-|.||++.|+-  -.|++..++++ +...+....
T Consensus       211 i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~--g~G~l~~r~~~~l~~~~~~~~  288 (431)
T TIGR01788       211 ALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYP--GVGWVIWRDEEALPEELIFHV  288 (431)
T ss_pred             HHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCC--CcEEEEEeChHHcchhheecc
Confidence            35667      89999999998321   111  11   2489999999999985553  24666666543 222221111


Q ss_pred             HhcCCC-------CC-h----HhHHHHHhcH--HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhh
Q 027424           66 NAEGSG-------LA-P----FDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  131 (223)
Q Consensus        66 ~~~g~~-------~s-p----~da~ll~~~l--~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~  131 (223)
                      .+.|..       .| +    .-.|+.++.+  +-+...+++..+.+..+++.|++.|.++ +.-|.    |        
T Consensus       289 ~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~e-l~~~~----~--------  355 (431)
T TIGR01788       289 NYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFE-IISDG----S--------  355 (431)
T ss_pred             cccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEE-EeeCC----C--------
Confidence            111110       01 1    1245554443  3466778999999999999999999874 44331    1        


Q ss_pred             hCCCCeeEEEEeCCH----HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----
Q 027424          132 AKGAGSVLSFLTGSL----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----  203 (223)
Q Consensus       132 ~~g~ggl~sf~~~~~----~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----  203 (223)
                         ..++++|.+.+.    .....+.+.|+-  .+.-         .+...++..+       .  ..-.+|++|=    
T Consensus       356 ---~~~iV~Fr~~~~~~~~~~~~~l~~~L~~--~G~~---------~~~~~~p~~~-------~--~~~~lR~~~~~~~~  412 (431)
T TIGR01788       356 ---GIPLVAFKLKDDADPGYTLYDLSHRLRE--RGWI---------VPAYTLPKNA-------E--DIVVMRIVVREGFS  412 (431)
T ss_pred             ---CceEEEEEeCCCCCCCcCHHHHHHHHHH--CCCc---------ccCCCCCCcc-------C--CeEEEEEEecCCCC
Confidence               358999988431    112223333211  0100         0111111111       0  2246899882    


Q ss_pred             CCCHHHHHHHHHHHHhcCC
Q 027424          204 IEDVNDLISDLDKALRTGP  222 (223)
Q Consensus       204 lEd~~dL~~dl~~Al~~~~  222 (223)
                      -|..+++++||..++...+
T Consensus       413 ~~~~~~~~~~~~~~~~~~~  431 (431)
T TIGR01788       413 RDLAELLIEDIEAALAYLE  431 (431)
T ss_pred             HHHHHHHHHHHHHHHHhhC
Confidence            2468999999999987654

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=97.90  E-value=0.00018  Score=64.38  Aligned_cols=102  Identities=15%  Similarity=0.075  Sum_probs=59.3

Q ss_pred             CCEEEEecCCCCCCCcCc-ccCCC----cEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            6 GALLLVDNSIMSPVLSRP-LELGA----DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         6 g~~lvVDnT~~s~~~~~p-l~~GA----Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +++||+|+++........ ..+-+    =|++.|+||+++-.|..+|. ++.+ +++.+.+.......  .++.......
T Consensus       178 ~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~-~i~~-~~~~~~l~~~~~~~--~~~~~~~~~a  253 (354)
T PRK04635        178 DAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGF-TLAN-EELIEILMRVIAPY--PVPLPVSEIA  253 (354)
T ss_pred             CcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhh-hhCC-HHHHHHHHhhcCCC--CCCHHHHHHH
Confidence            599999999753221111 11111    17899999999766777765 4444 55666655432222  2333222222


Q ss_pred             Hhc-----HHHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           81 LRG-----VKTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        81 ~~~-----l~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ...     .+.+..+.++..++...+.+.|++++.+
T Consensus       254 ~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  289 (354)
T PRK04635        254 TQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGA  289 (354)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            233     3444555667777788899999988754

>PLN02397 aspartate transaminase

Probab=97.90  E-value=0.00048  Score=63.51  Aligned_cols=170  Identities=12%  Similarity=0.086  Sum_probs=93.8

Q ss_pred             CccccCCEEEEecCCCCCCCc------Cc---ccCCCc--EEEecccccccCCcccceeEEE-ecChhHHHH----HHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS------RP---LELGAD--IVMHSATKFIAGHSDVMAGVLA-VKGERLAKE----LYFL   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~------~p---l~~GAD--ivv~S~tK~l~G~~d~~~G~v~-~~~~~~~~~----l~~~   64 (223)
                      +|+++|++||+|+++..-..-      .+   +...-+  |++.|+||.++-.|..+|++++ ..++++.++    +...
T Consensus       222 ~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~  301 (423)
T PLN02397        222 LIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLI  301 (423)
T ss_pred             HHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHH
Confidence            367899999999997433221      11   111113  7899999999977888888753 334444333    2222


Q ss_pred             HHhcCCCCChHhHHHHHhcHHH------H----HHHHHHHHhHHHHHHHHHhcCCCee--EEEcCCCCCCcchHHHHhhh
Q 027424           65 QNAEGSGLAPFDCWICLRGVKT------M----ALRVEKQQDNAQKIAEFLASHPRVK--KVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        65 ~~~~g~~~sp~da~ll~~~l~t------l----~~R~~~~~~na~~la~~L~~~p~v~--~V~yP~l~~~~~~~~~~~~~  132 (223)
                      ......+.+....+.+...|+.      .    ..-.++..++...+.+.|+++....  .+..|               
T Consensus       302 ~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p---------------  366 (423)
T PLN02397        302 ARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITK---------------  366 (423)
T ss_pred             HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccC---------------
Confidence            2222222333444444433332      1    1112455666677888888763100  11112               


Q ss_pred             CCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec-C--CCHHH
Q 027424          133 KGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-I--EDVND  209 (223)
Q Consensus       133 ~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-l--Ed~~d  209 (223)
                        .||++.+.--+.+.++++++.-++.-.                                ..+  |+++- +  |+.+.
T Consensus       367 --~gg~fl~~~l~~~~~~~Ll~~~~V~v~--------------------------------~~~--Ri~~~~~~~~~i~~  410 (423)
T PLN02397        367 --QIGMFSFTGLNKEQVDRMTKEYHIYMT--------------------------------RDG--RISMAGLSSKNVPY  410 (423)
T ss_pred             --CceEEEecCCCHHHHHHHHHhCCEEEC--------------------------------CCC--eEEEeeCCHHHHHH
Confidence              578777753234456665555444310                                122  77773 4  46789


Q ss_pred             HHHHHHHHHhcC
Q 027424          210 LISDLDKALRTG  221 (223)
Q Consensus       210 L~~dl~~Al~~~  221 (223)
                      +.+.+.++++.+
T Consensus       411 ~~~~i~~~~~~~  422 (423)
T PLN02397        411 LADAIHAVVTNA  422 (423)
T ss_pred             HHHHHHHHHhcc
Confidence            999999888643

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=97.86  E-value=0.00021  Score=64.74  Aligned_cols=171  Identities=16%  Similarity=0.223  Sum_probs=89.3

Q ss_pred             CccccCCEEEEecCCCCCCCcC----ccc-CC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl~-~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++. ++...    +.+ .|  .|+++  ++|.++|..-.+| +++.+ +++.+.+...........+
T Consensus       207 l~~~~~~lli~Dev~~-g~g~~G~~~~~~~~~~~pd~~~--~sK~l~~g~~~ig-~v~~~-~~~~~~~~~~~~~~t~~~~  281 (400)
T PTZ00125        207 LCKKYNVLLIVDEIQT-GLGRTGKLLAHDHEGVKPDIVL--LGKALSGGLYPIS-AVLAN-DDVMLVIKPGEHGSTYGGN  281 (400)
T ss_pred             HHHHcCCEEEEecccc-CCCccchhhHHHhcCCCCCEEE--EcccccCCCcCcE-EEEEc-HHHHhhccCCCCCCCCCcC
Confidence            4789999999999973 22110    111 23  48776  5699986322444 45454 4555554321111111246


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc----CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC--
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--  145 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~--  145 (223)
                      |..+......|+.+..  ..++..+....+.+.|++    ++.+..+                  .+.|.++.+++..  
T Consensus       282 ~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~------------------~~~g~~~~v~~~~~~  343 (400)
T PTZ00125        282 PLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEI------------------RGKGLLNAIVFDHSD  343 (400)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------ecccEEEEEEEccCc
Confidence            7666666666666531  122233333334444433    3433222                  2367888888742  


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhcC
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  221 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al~~~  221 (223)
                      ...+.+|.+.+.  ..++.+        .|.                 .++.|||+.-    -|+.+++++-|+++|++.
T Consensus       344 ~~~~~~~~~~l~--~~Gv~v--------~~~-----------------~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~  396 (400)
T PTZ00125        344 GVNAWDLCLKLK--ENGLLA--------KPT-----------------HDNIIRFAPPLVITKEQLDQALEIIKKVLKSF  396 (400)
T ss_pred             chHHHHHHHHHH--HCCeEE--------eec-----------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence            234455554442  112111        110                 2467999953    356777888888877653

>PRK08354 putative aminotransferase; Provisional

Probab=97.83  E-value=0.00059  Score=60.05  Aligned_cols=51  Identities=20%  Similarity=0.089  Sum_probs=35.1

Q ss_pred             CccccCCEEEEecCCCCCCCc-CcccCCCcEEEecccccccCCcccceeEEE
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLA   51 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~pl~~GADivv~S~tK~l~G~~d~~~G~v~   51 (223)
                      +|+++|+++|+|+++.....- .+....--|++.|+||.++-.|..+|.++.
T Consensus       145 ~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        145 AVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             HhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccceeeeeee
Confidence            367899999999998543211 112222348899999999877878876553

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=97.80  E-value=0.00071  Score=61.06  Aligned_cols=101  Identities=17%  Similarity=0.191  Sum_probs=54.1

Q ss_pred             CccccCCEEEEecCCCCCCC-cCc----ccCCC---cEEEecccccccCCcccceeEEEecChhHHHHHHHHH--HhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRP----LELGA---DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~p----l~~GA---Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--~~~g~   70 (223)
                      +||++|++++||++++.+.. .+.    .++|.   ++++.|++|.+++.+   +| ++.. ++....+....  .....
T Consensus       168 l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G---~~-vl~~-~~~~~~~~~~~~~~~~s~  242 (370)
T PRK05937        168 LSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG---AA-LLSS-SEVKQDLMLNSPPLRYST  242 (370)
T ss_pred             HHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc---eE-EEcC-HHHHHHHHHhCCCCeecC
Confidence            47889999999999976532 221    12343   378899999998654   33 4444 34433333211  12233


Q ss_pred             CCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHh
Q 027424           71 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA  106 (223)
Q Consensus        71 ~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~  106 (223)
                      ..+|....-+..+++.+..-.++..+..+.+.++|.
T Consensus       243 ~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~  278 (370)
T PRK05937        243 GLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFA  278 (370)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            456654444555665553222222333444445544

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=97.80  E-value=0.0011  Score=59.35  Aligned_cols=102  Identities=19%  Similarity=0.163  Sum_probs=61.7

Q ss_pred             cccCCEEEEecCCCCCCCcCccc-C-CCc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHH
Q 027424            3 HAHGALLLVDNSIMSPVLSRPLE-L-GAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW   78 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~~~~~pl~-~-GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~   78 (223)
                      .+++..+|+|+++.-.....++. + ..+  |++.|+||.++-.|..+|.++ . ++++.+.+........  ++.....
T Consensus       160 ~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v-~-~~~li~~l~~~~~~~~--vs~~~q~  235 (339)
T PRK06959        160 AARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVL-A-APALLAALRDALGAWT--VSGPARH  235 (339)
T ss_pred             HHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchheEEEe-c-CHHHHHHHHHhcCCCC--CcHHHHH
Confidence            46789999999986432212221 1 123  889999999987788887655 4 4567777765543322  3443333


Q ss_pred             HHHhcHHH--HHHH-HHHHHhHHHHHHHHHhcC
Q 027424           79 ICLRGVKT--MALR-VEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        79 ll~~~l~t--l~~R-~~~~~~na~~la~~L~~~  108 (223)
                      .+...|+.  +..+ .++..++...+.+.|+++
T Consensus       236 a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  268 (339)
T PRK06959        236 AVRAAFADAAWQAAMRERLAADGARLAALLRAH  268 (339)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            34444432  2223 355566777888889876

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.79  E-value=0.00015  Score=67.23  Aligned_cols=169  Identities=16%  Similarity=0.200  Sum_probs=93.2

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH---HhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~---~~~g~   70 (223)
                      +|+++|+++|+|+.+ +++.       +.-...-.||++  +.|.++| +-.-.+.++.+ +++.+.+....   ...+.
T Consensus       236 lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g-G~~p~~a~~~~-~~i~~~~~~~~~~~~~~~~  310 (429)
T PRK06173        236 LCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IGKALTG-GYLTLSATITT-EAIAQTICSGEAKCFMHGP  310 (429)
T ss_pred             HHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCCEEE--eehhhhC-CccccceEEec-HHHHHHHhcCCCCccccCC
Confidence            488999999999997 5442       111122358887  8999975 43333445444 45554432100   01221


Q ss_pred             --CCChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHhc---CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           71 --GLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        71 --~~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~~---~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                        ..+|..+...+..|+.+...  .++..++...+.+.|+.   +|.|..|                  +|.|.|+++++
T Consensus       311 T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~v~~v------------------Rg~Gl~~~iel  372 (429)
T PRK06173        311 TFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAAEFDSVAEV------------------RVLGAIGVVEM  372 (429)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeeee------------------eccceEEEEEe
Confidence              24677777777777776422  35555555556555552   3333222                  46789999999


Q ss_pred             CCHHHHHHHHhhc---CcceeccccCCCCCCC-CCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          144 GSLALSKHVVETT---KYFSITVSFGSVKSLI-SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       144 ~~~~~~~~f~~~l---~l~~~~~s~G~~~sli-~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      ++...+.++.+.+   .++ ..+ .|.  ++. .+|.                        .|.-|+.+.+++-|+++|+
T Consensus       373 ~~~~~~~~i~~~l~e~Gi~-v~~-~g~--~l~~~Ppl------------------------~it~~ei~~~~~~l~~~l~  424 (429)
T PRK06173        373 KEPVNMATLQPRFVEHGIW-VRP-FGK--LVYIMPPF------------------------IISPDELSQLTSGLLRVLK  424 (429)
T ss_pred             CCcccHHHHHHHHHHCCeE-EEe-cCC--EEEEeCCc------------------------cCCHHHHHHHHHHHHHHHH
Confidence            6443233333332   333 111 121  221 2222                        2445677888888888886


Q ss_pred             c
Q 027424          220 T  220 (223)
Q Consensus       220 ~  220 (223)
                      .
T Consensus       425 ~  425 (429)
T PRK06173        425 Q  425 (429)
T ss_pred             H
Confidence            4

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=97.79  E-value=0.00055  Score=61.05  Aligned_cols=102  Identities=10%  Similarity=0.041  Sum_probs=60.1

Q ss_pred             ccCCEEEEecCCCCCCC---cCcccCCC-cEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHH
Q 027424            4 AHGALLLVDNSIMSPVL---SRPLELGA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI   79 (223)
Q Consensus         4 ~~g~~lvVDnT~~s~~~---~~pl~~GA-Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~l   79 (223)
                      +++++||+|+++..-..   ..+++... =|++.|+||.++-.|..+|.++ + ++++.+.+...+...+  .+....+.
T Consensus       165 ~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v-~-~~~~~~~l~~~~~~~~--~~~~~q~a  240 (335)
T PRK14808        165 KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVV-S-SEKFIDAYNRVRLPFN--VSYVSQMF  240 (335)
T ss_pred             hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEE-e-CHHHHHHHHHhcCCCC--CCHHHHHH
Confidence            46899999999743111   11121111 2888999999986677776544 4 4567676655442222  34433333


Q ss_pred             HHhcH---HHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           80 CLRGV---KTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        80 l~~~l---~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      +...+   +.+..+.++..++...+.+.|++..
T Consensus       241 ~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g  273 (335)
T PRK14808        241 AKVALDHREIFEERTKFIVEERERMKSALREMG  273 (335)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            33333   3344455666666677888888764

>PLN02231 alanine transaminase

Probab=97.79  E-value=0.0034  Score=59.87  Aligned_cols=116  Identities=16%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCccc-----CCC---c---EEEecccccccC-CcccceeEEEec-ChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLE-----LGA---D---IVMHSATKFIAG-HSDVMAGVLAVK-GERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~-----~GA---D---ivv~S~tK~l~G-~~d~~~G~v~~~-~~~~~~~l~   62 (223)
                      +|+++|++||+|+.+.--.+     +.++.     .|.   |   |+++|++|.+.| .|-.+|++++.+ ++++.+.+.
T Consensus       299 ~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~  378 (534)
T PLN02231        299 FCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIY  378 (534)
T ss_pred             HHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHH
Confidence            47899999999999754221     11111     122   2   778999997643 566776655433 566766665


Q ss_pred             HHHHhcC-CCCChH-hHHHHHh-------cHHHHH-HH---HHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           63 FLQNAEG-SGLAPF-DCWICLR-------GVKTMA-LR---VEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        63 ~~~~~~g-~~~sp~-da~ll~~-------~l~tl~-~R---~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      ....... ....+. -+..++.       +.+... .+   .+...+++..+.+.|++.|.+ .+.-|
T Consensus       379 k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi-~~~~p  445 (534)
T PLN02231        379 KVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGV-TCNKA  445 (534)
T ss_pred             HHHhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-eecCC
Confidence            4433211 111111 1122221       122211 11   355677888899999988765 34434

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.79  E-value=0.00021  Score=65.89  Aligned_cols=172  Identities=13%  Similarity=0.157  Sum_probs=95.7

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH---HH-hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---QN-AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~---~~-~~g   69 (223)
                      +|++||+++|+|+.+ +++.       +.....-.||+  ++.|.++|...-+++ ++. ++++.+.+...   .. ..+
T Consensus       229 lc~~~g~llI~DEv~-tg~gr~G~~~a~~~~~v~pDi~--~~~K~l~gG~~p~~a-v~~-~~~i~~~~~~~~~~~~~~~~  303 (423)
T PRK05964        229 ICDRHGVLLIFDEIA-TGFGRTGTLFACEQAGVSPDIM--CLSKGLTGGYLPLAA-TLC-TAEIFEAFYSDDRAKAFMHS  303 (423)
T ss_pred             HHHHcCCEEEEechh-hCCCcCcchhHHHhcCCCCCee--eeehhhhcCcccceE-EEE-cHHHHHhhhcCCcccccccC
Confidence            489999999999996 3221       12122346776  566999864344555 544 45665554311   00 122


Q ss_pred             CC--CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           70 SG--LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        70 ~~--~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      .+  .+|..+...+..++.+..  ..++..+....+.+.|+....     +|...          ..+|.|.|++|++.+
T Consensus       304 ~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~-----~~~i~----------~vrg~Gl~~~i~l~~  368 (423)
T PRK05964        304 PSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRD-----LPGVA----------DVRVLGAIGAVELDR  368 (423)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcc-----CCCeE----------EeecccEEEEEEecc
Confidence            22  467777777777775532  345666666666666654311     33221          124678999999943


Q ss_pred             HH---HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHH
Q 027424          146 LA---LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDKAL  218 (223)
Q Consensus       146 ~~---~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~Al  218 (223)
                      ..   ...+|...+.  ..++-        ..|                  ..+.+|++    +--||++.+++-|+++|
T Consensus       369 ~~~~~~~~~l~~~l~--~~Gv~--------v~~------------------~~~~lR~~p~l~~t~edId~~v~~l~~al  420 (423)
T PRK05964        369 PVLERDGPALRAFAL--ERGVL--------LRP------------------LGNTIYLMPPYIITAEELDRITDAIVEVA  420 (423)
T ss_pred             CcchhHHHHHHHHHH--HCCeE--------EEe------------------cCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence            22   2445544431  11110        011                  11358887    44567888888888887


Q ss_pred             hc
Q 027424          219 RT  220 (223)
Q Consensus       219 ~~  220 (223)
                      +.
T Consensus       421 ~~  422 (423)
T PRK05964        421 DE  422 (423)
T ss_pred             hh
Confidence            53

>PLN00144 acetylornithine transaminase

Probab=97.79  E-value=0.00053  Score=62.46  Aligned_cols=168  Identities=19%  Similarity=0.302  Sum_probs=91.4

Q ss_pred             CccccCCEEEEecCCCCCCCcC--c-----ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR--P-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~--p-----l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+.... +...  +     ...-.|  +.+++|.++| +..+ |+++.+ +++.+.+...........+
T Consensus       196 l~~~~g~llI~DEv~tg-~gr~g~~~~~~~~~~~PD--i~t~sK~l~~-G~pi-g~v~~~-~~~~~~~~~~~~~~T~~~~  269 (382)
T PLN00144        196 LCDEAGALLVFDEVQCG-LGRTGYLWAHEAYGVEPD--IMTLAKPLAG-GLPI-GAVLVT-EKVASAINPGDHGSTFAGG  269 (382)
T ss_pred             HHHHcCCEEEEechhhC-CCccchHhhhhhcCCCCC--EEEecccccC-Ccce-EEEEEc-HHHHhccCCCCCCCCCCCC
Confidence            48899999999999632 2111  1     112246  7788999986 4455 445454 4565544321111122347


Q ss_pred             hHhHHHHHhcHHHH-----HHHHHHHHhHHHH-HHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHH
Q 027424           74 PFDCWICLRGVKTM-----ALRVEKQQDNAQK-IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  147 (223)
Q Consensus        74 p~da~ll~~~l~tl-----~~R~~~~~~na~~-la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~  147 (223)
                      |..+......|+.+     ..++++..+.... +.+.++++|.+..|.                  |.|.++.+++..  
T Consensus       270 pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vr------------------g~G~~~~l~l~~--  329 (382)
T PLN00144        270 PLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVR------------------GVGLLVGIQLDV--  329 (382)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCCceeee------------------cCceEEEEEecC--
Confidence            77777777666554     2333333222222 344555666554443                  578899999832  


Q ss_pred             HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       148 ~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      .+++|.+.+.  ..+..+        .|.               + ....|||+.++    |+.+..++-|+++|+.
T Consensus       330 ~~~~~~~~~~--~~Gv~i--------~~~---------------~-~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~  380 (382)
T PLN00144        330 PAGPLVDACR--DSGLLV--------LTA---------------G-KGDVVRLVPPLVISEAELEQAVEILADCLPA  380 (382)
T ss_pred             ccHHHHHHHH--HCCeEE--------eec---------------C-CCCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence            1233443321  111111        110               1 13679999998    5667777788887764

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=97.79  E-value=0.00093  Score=59.91  Aligned_cols=105  Identities=12%  Similarity=0.082  Sum_probs=60.7

Q ss_pred             ccccCCEEEEecCCCCCCC----cCccc-CCC---cEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            2 AHAHGALLLVDNSIMSPVL----SRPLE-LGA---DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~----~~pl~-~GA---Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      ++++++ +|+|+++.-...    ..++. ...   =|++.|+||.++-.|..+|.++ . ++++.+++.....  ...++
T Consensus       174 ~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v-~-~~~~~~~~~~~~~--~~~~s  248 (360)
T PRK07392        174 LEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAI-A-HPDRLQRWQQWRD--PWPVN  248 (360)
T ss_pred             HHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeee-C-CHHHHHHHHhhCC--CCCCC
Confidence            566775 777999743211    11111 111   2888999999986777876654 4 4456565543322  23456


Q ss_pred             hHhHHHHHhcHHH--HHHH-HHHHHhHHHHHHHHHhcCCCe
Q 027424           74 PFDCWICLRGVKT--MALR-VEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        74 p~da~ll~~~l~t--l~~R-~~~~~~na~~la~~L~~~p~v  111 (223)
                      ....+.+.+.++.  +... .+...++...+.+.|++.|.+
T Consensus       249 ~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  289 (360)
T PRK07392        249 GLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGL  289 (360)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            6555555555543  2221 244556677788899877664

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=97.79  E-value=0.00026  Score=64.70  Aligned_cols=173  Identities=16%  Similarity=0.272  Sum_probs=90.9

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+.+ +++.     .....+|  .|++  +++|.++| +-.+|+ ++.+ +++.+.+...........+
T Consensus       208 lc~~~g~llI~DEv~-tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lgg-G~piga-v~~~-~~i~~~~~~~~~~~t~~~~  281 (397)
T TIGR03246       208 LCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDIL--TSAKALGG-GFPIGA-MLTT-TEIAAHLKVGTHGTTYGGN  281 (397)
T ss_pred             HHHHcCCEEEEechh-hcCCccccchhhhhcCCCCCEE--EeehhhhC-CcceeE-EEEc-HHHHHhccCCCcCCCCCCC
Confidence            488999999999996 3331     1111223  4665  78999975 455555 5454 4555544321111111246


Q ss_pred             hHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC--HHHH
Q 027424           74 PFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALS  149 (223)
Q Consensus        74 p~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~--~~~~  149 (223)
                      |..+...+..|+.+.  ...++..++...+.+.|++...    .||-.          ...+|.|.++.+++.+  .+.+
T Consensus       282 p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~----~~~~~----------~~vrg~G~~~~i~~~~~~~~~~  347 (397)
T TIGR03246       282 PLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINA----RYNVF----------SEIRGKGLLIGAVLTEAYQGKA  347 (397)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh----cCCCe----------EeeecCceEEEEEEcCchhhHH
Confidence            666666666666542  1234444555555555543211    11100          0124678899998843  2345


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHhc
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~Al~~  220 (223)
                      .+|.+.+.-  .+        ++..+                 ..++.+|++    +--||.+.+++-|+++++.
T Consensus       348 ~~~~~~l~~--~G--------v~~~~-----------------~g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       348 KQFVNAAAE--EG--------VIALI-----------------AGPNVVRFAPSLVISDDDIDEGLARFERAIEQ  395 (397)
T ss_pred             HHHHHHHHH--CC--------eEEee-----------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            566554321  11        11011                 013568884    3345678888888888764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=97.78  E-value=0.00033  Score=65.06  Aligned_cols=106  Identities=19%  Similarity=0.159  Sum_probs=72.8

Q ss_pred             CccccCCEEEEecCCCC-----------CCCcCcc-c------CCCcEEEecccccccCCcccceeEEEecChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMS-----------PVLSRPL-E------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-----------~~~~~pl-~------~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~   62 (223)
                      +|+++|++||.|++...           .+...++ +      -++|.+..|..|...++   +||+++.+++++.++++
T Consensus       181 ia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~---~GG~i~~~d~~l~~~~~  257 (431)
T cd00617         181 LAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVN---IGGFLALRDDELYEEAR  257 (431)
T ss_pred             HHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCc---cceEEEeCcHHHHHHHH
Confidence            58899999999999432           1222222 1      26899999999988765   48899888877877776


Q ss_pred             HHH-Hh----cCCCCChHhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHhcCC
Q 027424           63 FLQ-NA----EGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        63 ~~~-~~----~g~~~sp~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ... ..    ....+++.+...+..+|+..  ..++++..++...+++.|++..
T Consensus       258 ~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~G  311 (431)
T cd00617         258 QRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEAG  311 (431)
T ss_pred             HhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCC
Confidence            432 11    12346777766666577553  4556767777888999999874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=97.78  E-value=0.00042  Score=62.76  Aligned_cols=103  Identities=16%  Similarity=0.125  Sum_probs=56.5

Q ss_pred             CccccCCEEEEecCCCCCCCc--C--ccc-CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS--R--PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~--~--pl~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|+.+.. +..  +  +.+ .|.+.-+.|++|.+++ +-.+|+ ++++ +++.+.+.........+.+|.
T Consensus       204 l~~~~g~~lI~DEv~~g-~g~~g~~~~~~~~~~~pdi~t~sK~l~~-G~~ig~-~~~~-~~~~~~~~~~~~~~t~~~~~~  279 (389)
T PRK01278        204 LCDENGLLLIFDEVQCG-MGRTGKLFAHEWAGVTPDIMAVAKGIGG-GFPLGA-CLAT-EEAAKGMTPGTHGSTYGGNPL  279 (389)
T ss_pred             HHHHcCCEEEEeccccC-CCcCCcceeecccCCCCCEEEEehhccC-CcceEE-EEEc-HHHHhccCCCCCCCCCCccHH
Confidence            48999999999998742 211  1  111 2332224588999984 455655 4454 445444432211122235777


Q ss_pred             hHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc
Q 027424           76 DCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        76 da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~  107 (223)
                      .+......|+.+..  ..++..++...+.+.|+.
T Consensus       280 ~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~  313 (389)
T PRK01278        280 AMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEG  313 (389)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            77777777776532  234444555555555543

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=97.76  E-value=0.00028  Score=63.32  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=59.7

Q ss_pred             CccccCCEEEEecCCCCCCCcC----c---ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----P---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----p---l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++. .+...    +   .....|++  +++|.++ .+-.+|+ ++.+ +++.+.+...........+
T Consensus       199 l~~~~~~~~i~De~~~-~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~riG~-~~~~-~~~~~~~~~~~~~~~~~~~  272 (379)
T TIGR00707       199 ICKDKDALLIFDEVQT-GIGRTGKFFAYEHYGIEPDII--TLAKGLG-GGVPIGA-TLAK-EEVAEAFTPGDHGSTFGGN  272 (379)
T ss_pred             HHHHcCCEEEEecccc-CCCccchhhhHHhcCCCCCEE--EEccccc-CCcccEE-EEEc-HHHHhhhcCCCCCCCCCCC
Confidence            4788999999999974 23211    1   11234655  6899999 4555554 5454 4565555432111222356


Q ss_pred             hHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhcC
Q 027424           74 PFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        74 p~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~~  108 (223)
                      |.....+...|+.+.  .+.++..++...+.+.|++.
T Consensus       273 ~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (379)
T TIGR00707       273 PLACAAALAVLEVIEKERLLENVKEKGDYFKERLEEL  309 (379)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            666666776666543  23456666667777777643

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=97.76  E-value=0.00035  Score=63.12  Aligned_cols=100  Identities=18%  Similarity=0.262  Sum_probs=56.0

Q ss_pred             CccccCCEEEEecCCCCCCCc----Ccc-cCC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RPL-ELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~pl-~~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++.. +..    .+. ..|  .|++  +++|.+++ +-.+|+ ++.+ +++.+.+...........+
T Consensus       211 l~~~~~~~lI~DE~~~g-~g~~g~~~~~~~~~~~pdi~--t~sK~~~~-G~rig~-~~~~-~~~~~~~~~~~~~~t~~~~  284 (396)
T PRK02627        211 LCDENGILLILDEVQTG-MGRTGKLFAYQHYGIEPDIM--TLAKGLGG-GVPIGA-VLAK-EKVADVFTPGDHGSTFGGN  284 (396)
T ss_pred             HHHHcCCEEEEechhcC-CCccCceeeehhcCCCCCEE--EEcchhhC-CcccEE-EEEc-HHHHhccCCCCCCCCCCCC
Confidence            47899999999999752 211    111 223  3544  68999994 556665 4454 4555544321111222357


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA  106 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~  106 (223)
                      |..+......|+.+..  ..++..++...+.+.|+
T Consensus       285 ~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~  319 (396)
T PRK02627        285 PLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLR  319 (396)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            7777777777776532  22444444444444443

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=97.75  E-value=0.001  Score=59.55  Aligned_cols=75  Identities=16%  Similarity=0.141  Sum_probs=43.3

Q ss_pred             CCEEEEecCCCCCCCc-CcccC--CCc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            6 GALLLVDNSIMSPVLS-RPLEL--GAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         6 g~~lvVDnT~~s~~~~-~pl~~--GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      ++++|+|+++..-... .++..  ..+  |++.|+||.++-.|..+|.++ + ++++.+++......  ...++......
T Consensus       186 ~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~-~-~~~~~~~~~~~~~~--~~~~~~~~~~a  261 (357)
T PRK14809        186 ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAV-V-PEEWADAYARVNTP--FAASELACRAG  261 (357)
T ss_pred             CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeee-c-CHHHHHHHHHhCCC--CCCCHHHHHHH
Confidence            7899999997532111 11110  112  778999999987777776644 4 45666666544322  23455544444


Q ss_pred             HhcH
Q 027424           81 LRGV   84 (223)
Q Consensus        81 ~~~l   84 (223)
                      ...+
T Consensus       262 ~~~l  265 (357)
T PRK14809        262 LAAL  265 (357)
T ss_pred             HHHh
Confidence            4444

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=97.75  E-value=0.00057  Score=62.01  Aligned_cols=101  Identities=9%  Similarity=0.030  Sum_probs=57.5

Q ss_pred             CEEEEecCCCCCCCc-Cc---c-cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHHH
Q 027424            7 ALLLVDNSIMSPVLS-RP---L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL   81 (223)
Q Consensus         7 ~~lvVDnT~~s~~~~-~p---l-~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll~   81 (223)
                      +++|+|+++..-... .+   + ...-.|++.|+||.++-.|..+|. ++. ++++.+.+.......  .++....+.+.
T Consensus       205 ~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy-~~~-~~~~i~~l~~~~~~~--~~~~~~q~aa~  280 (380)
T PLN03026        205 ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGY-GAF-PLSIIEYLWRAKQPY--NVSVAAEVAAC  280 (380)
T ss_pred             CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCcccccee-eec-CHHHHHHHHHhcCCC--CCCHHHHHHHH
Confidence            799999997421110 11   1 122348999999999766777755 544 455666665444322  24443334444


Q ss_pred             hcHHH---HHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           82 RGVKT---MALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        82 ~~l~t---l~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      +.|+.   +....++..++...+.+.|++.+.+
T Consensus       281 ~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  313 (380)
T PLN03026        281 AALSNPKYLEDVKNALVEERERLFGLLKEVPFL  313 (380)
T ss_pred             HHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            44532   2222344455666777888887653

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=97.74  E-value=0.00071  Score=62.37  Aligned_cols=174  Identities=16%  Similarity=0.275  Sum_probs=94.0

Q ss_pred             CccccCCEEEEecCCCCCCCcC----cc-cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl-~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|+.+.. +...    ++ ..|.+.-+.|++|.+++ +-.+|+ ++. ++++.+.+...........+|.
T Consensus       228 l~~~~~~~lI~Dev~~g-~g~~g~~~~~~~~~~~pdi~s~sK~l~~-G~rig~-v~~-~~~~~~~~~~~~~~~t~~~~~~  303 (425)
T PRK08088        228 LCDEHGIMLIADEVQTG-AGRTGTLFAMEQMGVAADLTTFAKSIAG-GFPLAG-VTG-RAEVMDAIAPGGLGGTYAGNPI  303 (425)
T ss_pred             HHHHcCCEEEEeccccC-CCcCcchhHHhhcCCCCCEEEEeccccC-CCccee-eEe-cHHHHhhcCCCCCCCCCCcCHH
Confidence            47899999999999653 2111    11 23555557899999985 556655 544 4456555432222222235777


Q ss_pred             hHHHHHhcHHHHH-----HHHHHHHhHHHH-HHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-C---
Q 027424           76 DCWICLRGVKTMA-----LRVEKQQDNAQK-IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-S---  145 (223)
Q Consensus        76 da~ll~~~l~tl~-----~R~~~~~~na~~-la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~---  145 (223)
                      .+..+...|+...     .++++..+.... +.+.++.+|.+..|.                  |.|.++.+++. +   
T Consensus       304 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~------------------g~G~~~~l~l~~~~~~  365 (425)
T PRK08088        304 ACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVR------------------GLGAMIAIELFEDGDH  365 (425)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe------------------ccceEEEEEEecCCCC
Confidence            7777777777642     223222222222 222333456544443                  45888999872 1   


Q ss_pred             ----HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHH
Q 027424          146 ----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  217 (223)
Q Consensus       146 ----~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~A  217 (223)
                          ...+.+|...+.-  .++.+        .|.               +..++.|||+..+    |+.+..++-|+++
T Consensus       366 ~~p~~~~~~~l~~~~~~--~Gv~~--------~~~---------------~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~  420 (425)
T PRK08088        366 SKPNAKLTAQIVARARD--KGLIL--------LSC---------------GPYYNVLRILVPLTIEDAQIRQGLEIIAQC  420 (425)
T ss_pred             CCCCHHHHHHHHHHHHh--CCCEE--------ecC---------------CCCCCEEEEECCCCcCHHHHHHHHHHHHHH
Confidence                2334555544321  11111        010               0013569999984    3456667777777


Q ss_pred             HhcC
Q 027424          218 LRTG  221 (223)
Q Consensus       218 l~~~  221 (223)
                      ++++
T Consensus       421 l~~~  424 (425)
T PRK08088        421 FDEA  424 (425)
T ss_pred             HHhh
Confidence            7654

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=97.74  E-value=0.00057  Score=63.60  Aligned_cols=82  Identities=16%  Similarity=0.288  Sum_probs=46.7

Q ss_pred             CccccCCEEEEecCCCCCCCc-C--ccc-CC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-R--PLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~--pl~-~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|+....-... .  +++ ++  .||+  |++|.+++ +-.+|+++ .+ +++.+.+...........+|
T Consensus       248 l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~~-G~pig~v~-~~-~~i~~~~~~~~~~~T~~g~~  322 (451)
T PRK06918        248 ICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLGA-GVPISGVI-GR-KEIMDESAPGELGGTYAGSP  322 (451)
T ss_pred             HHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhcC-CCccEEEE-Ec-HHHHhccCCCCcCcCCCcCH
Confidence            478999999999996321111 1  112 34  6755  89999985 56666644 44 45555442211111123467


Q ss_pred             HhHHHHHhcHHHH
Q 027424           75 FDCWICLRGVKTM   87 (223)
Q Consensus        75 ~da~ll~~~l~tl   87 (223)
                      ..+......++.+
T Consensus       323 l~~aaa~a~l~~i  335 (451)
T PRK06918        323 LGCAAALAVLDII  335 (451)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776655566544

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=97.73  E-value=0.00087  Score=60.38  Aligned_cols=102  Identities=17%  Similarity=0.085  Sum_probs=58.5

Q ss_pred             cCCEEEEecCCCCCCC----cCccc----CC-CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            5 HGALLLVDNSIMSPVL----SRPLE----LG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~----~~pl~----~G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      .++++|+|+++.--..    ..++.    .+ --|++.|+||.++-.|..+|.++ ..++++.+.+.......+  .+..
T Consensus       190 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i-~~~~~l~~~~~~~~~~~~--~~~~  266 (371)
T PRK05166        190 PETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGL-VSDPELVGLLDRVRTPFN--VNGA  266 (371)
T ss_pred             CCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeee-cCCHHHHHHHHHhccCCC--CCHH
Confidence            4889999999742211    11111    11 13889999999986677776544 456667666654433222  3443


Q ss_pred             hHHHHHhcH---HHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           76 DCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        76 da~ll~~~l---~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ....+...+   +.+....+...++-..+.+.|+++.
T Consensus       267 ~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g  303 (371)
T PRK05166        267 AQAAALAALDDEEHLAKGVALALAERERLKKELAEMG  303 (371)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            322333333   2233334555566677888998873

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=97.72  E-value=0.00064  Score=62.63  Aligned_cols=120  Identities=14%  Similarity=0.199  Sum_probs=65.6

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|++||+++|+|+.+..-      +.+.....-.||++  ++|.++| +-.+|+ ++.+ +++.+.+...........+|
T Consensus       226 lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~--lsK~l~~-G~pig~-v~~~-~~i~~~~~~~~~~~T~~~~p  300 (420)
T TIGR00700       226 WCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLIT--TAKSLAD-GLPLSG-VTGR-AEIMDAPAPGGLGGTYAGNP  300 (420)
T ss_pred             HHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEE--eeccccC-CcceEE-EEec-HHHHhhcCCCCcCCCCCcCH
Confidence            488999999999996321      11122223468665  9999995 566665 4444 45555442111111112467


Q ss_pred             HhHHHHHhcHHHH-----HHHHHHHHhHH-HHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           75 FDCWICLRGVKTM-----ALRVEKQQDNA-QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        75 ~da~ll~~~l~tl-----~~R~~~~~~na-~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      ..+...+..|+.+     ..++++..+.. ..+.+..+.+|.+..|.                  |.|.++.|++
T Consensus       301 l~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vr------------------g~G~~~~i~~  357 (420)
T TIGR00700       301 LACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVR------------------GLGAMIAVEL  357 (420)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEee------------------ccceEEEEEE
Confidence            7776666666554     23333332222 22333334466554443                  4688888887

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06855 aminotransferase; Validated

Probab=97.72  E-value=0.0023  Score=59.17  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=60.2

Q ss_pred             CccccCCEEEEecCCCCCCCc----Ccc-cC---CCcEEEecccccccCCcccceeEEEec---ChhHH---HHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RPL-EL---GADIVMHSATKFIAGHSDVMAGVLAVK---GERLA---KELYFLQN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~pl-~~---GADivv~S~tK~l~G~~d~~~G~v~~~---~~~~~---~~l~~~~~   66 (223)
                      +|+++|++||.|+.+..-.+.    .|+ .+   +--|++.|+||+++..|..+|.++.-+   ++.+.   +++.....
T Consensus       199 ~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~  278 (433)
T PRK06855        199 IAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKM  278 (433)
T ss_pred             HHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhc
Confidence            378899999999997532211    121 11   123899999999987888887765422   12222   22222211


Q ss_pred             hcCCCCChHhHHHHHhcHH-----HH-HHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           67 AEGSGLAPFDCWICLRGVK-----TM-ALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        67 ~~g~~~sp~da~ll~~~l~-----tl-~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      . ..+.+...-+.+.+.++     .. ....+...++...+.+.|++.|.+
T Consensus       279 ~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~  328 (433)
T PRK06855        279 I-EVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGL  328 (433)
T ss_pred             c-ccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            1 11233333333344442     22 233345566677788889877653

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=97.72  E-value=0.0012  Score=59.36  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=62.5

Q ss_pred             ccccCCEEEEecCCCCCCC---cCcccC---CCc-EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            2 AHAHGALLLVDNSIMSPVL---SRPLEL---GAD-IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~---~~pl~~---GAD-ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      ++.+++++|+|++++....   ..++.+   .-+ |++.|++|.++..|..+|. +++ ++++.+.+.....  ....++
T Consensus       186 ~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~-~~~-~~~~~~~l~~~~~--~~~~s~  261 (368)
T PRK03317        186 LDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGY-LAA-APAVVDALRLVRL--PYHLSA  261 (368)
T ss_pred             HHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhh-hhC-CHHHHHHHHhcCC--CCCCCH
Confidence            4556899999999853211   111111   112 7888999999866777765 444 4566666654332  224566


Q ss_pred             HhHHHHHhcHH---HHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           75 FDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        75 ~da~ll~~~l~---tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .....+...++   .+..++++..++...+.+.|+++.
T Consensus       262 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g  299 (368)
T PRK03317        262 VTQAAARAALRHADELLASVAALRAERDRVVAWLRELG  299 (368)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            55555555554   334445666677777888888763

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=97.72  E-value=0.0005  Score=62.13  Aligned_cols=163  Identities=15%  Similarity=0.159  Sum_probs=91.4

Q ss_pred             ccccCCEEEEecCCCCCCCc----Cccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            2 AHAHGALLLVDNSIMSPVLS----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~----~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      |++++ .+|+|+++......    .++.    ..--|++.|+||+++..|..+|.++ + ++++.+.+.....  ...++
T Consensus       180 ~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i-~-~~~~~~~l~~~~~--~~~~~  254 (366)
T PRK01533        180 ISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAV-G-HEELIEKLNVVRL--PFNVS  254 (366)
T ss_pred             CCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHh-C-CHHHHHHHHHhcC--CCCcC
Confidence            45555 68889997421111    1111    1234899999999998888887654 4 4567777765442  23456


Q ss_pred             hHhHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHH
Q 027424           74 PFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK  150 (223)
Q Consensus        74 p~da~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~  150 (223)
                      +.....+...|+.   +....+...++...+.++++.+. + +| +|                ..|+.+-+.+.+.+...
T Consensus       255 ~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~g-~-~~-~~----------------~~~nf~~~~~~~~~~~~  315 (366)
T PRK01533        255 SLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENE-I-PF-YQ----------------SQTNFIFLPVENGGEIY  315 (366)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-C-cc-CC----------------CcCcEEEEeCCCHHHHH
Confidence            6555555555543   22223445566667777887763 2 22 22                14555666663322222


Q ss_pred             HHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 027424          151 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  219 (223)
Q Consensus       151 ~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-Ed~~dL~~dl~~Al~  219 (223)
                      +.+..-++. +.            ++                  ++.||||||- |+.+.|++-|++.++
T Consensus       316 ~~l~~~GI~-Vr------------~~------------------~~~iRis~~~~~~~~~l~~al~~~~~  354 (366)
T PRK01533        316 EACAHAGFI-IR------------PF------------------PNGVRITVGTREQNEGVISVLQQHFE  354 (366)
T ss_pred             HHHHHCCcE-Ec------------cC------------------CCceEEeCCCHHHHHHHHHHHHHHHH
Confidence            222222221 10            10                  2459999995 567888888887765

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=97.71  E-value=0.003  Score=57.11  Aligned_cols=106  Identities=11%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCC-CcEEEecccccccCCcccceeEEEecChhHHHHHHH----------H---H-
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF----------L---Q-   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~----------~---~-   65 (223)
                      |+|++|++++||.+-.-+  ..|++.. +|+++-|.+|.+++++-  .+.+..++ +..+++..          .   . 
T Consensus       150 I~~~~g~~~iVDavqs~g--~~~idv~~~D~~~~s~~K~lg~~~G--l~~~~~s~-~~~~~~~~~~~~~~~~p~~~d~~~  224 (361)
T TIGR01366       150 PEGSDDALVVIDATSGAG--GLPVDIAETDVYYFAPQKNFASDGG--LWLAIMSP-AALERIEAIAASGRWVPEFLSLPT  224 (361)
T ss_pred             ccccCCCeEEEEcCcccc--CCCCCHHHCCEEEEEchhhcCCCCc--eEEEEECH-HHHhhhhcccCCCCCCchhhhHHH
Confidence            468899999999985443  3444432 79999999999999841  23333454 33333321          0   0 


Q ss_pred             --H-----hcCCCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           66 --N-----AEGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        66 --~-----~~g~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                        .     .+-.+.+-...+-+.++++.+      ..+.+++.+.++.+.++|++.+.+
T Consensus       225 ~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~  283 (361)
T TIGR01366       225 AVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYA  283 (361)
T ss_pred             HHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence              0     001122223333455666654      345688888888899999998854

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=97.71  E-value=0.0015  Score=59.50  Aligned_cols=107  Identities=15%  Similarity=0.081  Sum_probs=56.9

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc---cCCC--cEEEecccccccCCcccceeEEEecChhHH--------HHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL---ELGA--DIVMHSATKFIAGHSDVMAGVLAVKGERLA--------KELYF   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl---~~GA--Divv~S~tK~l~G~~d~~~G~v~~~~~~~~--------~~l~~   63 (223)
                      +|+++|++||+|+++.--..    ..++   .-..  -|++.|+||.++.+|..+|.++ +++ ++.        +.+..
T Consensus       201 ~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i-~~~-~l~~~~~~~~~~~~~~  278 (402)
T TIGR03542       201 YANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTV-VPK-ELTYADGHSVIQDWER  278 (402)
T ss_pred             HHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEE-ecH-HHhhcchhhHHHHHHH
Confidence            36789999999999753211    1121   1111  2668999999988888887655 444 443        11111


Q ss_pred             HHHhcCCCCChHhHHHHHhcH-----HHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           64 LQNAEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        64 ~~~~~g~~~sp~da~ll~~~l-----~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .........++..-..+...+     +.+....+...++...+.+.|+++.
T Consensus       279 ~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  329 (402)
T TIGR03542       279 RQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAG  329 (402)
T ss_pred             HhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            111112223432222222222     2222223455666677888888763

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PLN02590 probable tyrosine decarboxylase

Probab=97.71  E-value=0.0011  Score=63.34  Aligned_cols=176  Identities=20%  Similarity=0.263  Sum_probs=107.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCc--------ccCCCcEEEecccccccCCcccceeEEEecChh-HHHHHHHHHHhc---
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP--------LELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFLQNAE---   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p--------l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~-~~~~l~~~~~~~---   68 (223)
                      +|+++|+++=||.+||......|        ++ .||=+.-+.||++.-+  --+|++.+++.. +...+.....++   
T Consensus       312 i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie-~ADSit~D~HK~l~~p--~~cg~llvr~~~~l~~a~~~~~~YL~~~  388 (539)
T PLN02590        312 IAKKYGIWLHVDAAYAGNACICPEYRKFIDGIE-NADSFNMNAHKWLFAN--QTCSPLWVKDRYSLIDALKTNPEYLEFK  388 (539)
T ss_pred             HHHHhCCeEEEecchhhhhhcChhhHHHhcCCc-cCCEEEECchhhcCcC--cCEEEEEecCHHHHHHHhhcCHHHhCCc
Confidence            57899999999999988654332        23 4899999999999743  457777777643 222221101111   


Q ss_pred             -------------CCCC----ChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHH
Q 027424           69 -------------GSGL----APFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  129 (223)
Q Consensus        69 -------------g~~~----sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~  129 (223)
                                   +..+    ...-.|+.++  |.+-+..++++..+.|+.++++++++|.++-|.-|-           
T Consensus       389 ~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~-----------  457 (539)
T PLN02590        389 VSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRY-----------  457 (539)
T ss_pred             ccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-----------
Confidence                         1111    2234555555  445578889999999999999999999876555442           


Q ss_pred             hhhCCCCeeEEEEeC----CHH----HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE
Q 027424          130 SQAKGAGSVLSFLTG----SLA----LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  201 (223)
Q Consensus       130 ~~~~g~ggl~sf~~~----~~~----~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls  201 (223)
                            =++++|...    +.+    ..+++.++++--  +.            +..++..+       .  ..-.+|++
T Consensus       458 ------l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~--G~------------~~vs~t~~-------~--g~~~lR~~  508 (539)
T PLN02590        458 ------FSLVCFRLAPVDGDEDQCNERNRELLAAVNST--GK------------IFISHTAL-------S--GKFVLRFA  508 (539)
T ss_pred             ------eEEEEEEecCCCCCHHHHHHHHHHHHHHHHhC--CC------------EEEEeeEE-------C--CEEEEEEE
Confidence                  267888763    222    123444443210  00            00011100       0  23479999


Q ss_pred             ec-----CCCHHHHHHHHHHHHh
Q 027424          202 VG-----IEDVNDLISDLDKALR  219 (223)
Q Consensus       202 vG-----lEd~~dL~~dl~~Al~  219 (223)
                      |+     .||++++++.+.+..+
T Consensus       509 i~n~~T~~~dv~~~~~~i~~~a~  531 (539)
T PLN02590        509 VGAPLTEEKHVTEAWQIIQKHAS  531 (539)
T ss_pred             ecCCCCCHHHHHHHHHHHHHHHH
Confidence            97     6678888888887654

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=97.70  E-value=0.00044  Score=64.69  Aligned_cols=170  Identities=14%  Similarity=0.221  Sum_probs=94.3

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC-
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL-   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~-   72 (223)
                      +|+++|+++|+|+... ++       .+.-...-.||+  .+.|.++|.---+++++ .++ ++.+.+....-..+.+. 
T Consensus       260 lc~~~g~llI~DEV~t-G~GRtG~~~a~e~~gv~PDiv--t~gK~lggG~~Pigav~-~~~-~i~~~~~~~~~~~~~T~~  334 (459)
T PRK11522        260 LCDEFGALLILDEVQT-GMGRTGKMFACEHENVQPDIL--CLAKALGGGVMPIGATI-ATE-EVFSVLFDNPFLHTTTFG  334 (459)
T ss_pred             HHHHcCCEEEecccee-cCCccchhhhhhccCCCCCEE--EechhhhCCCccceeEE-EcH-HHHHHhccCCcccCCCCC
Confidence            4889999999999962 33       121111226877  67999986212355544 543 45443321111233444 


Q ss_pred             -ChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCC-CeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           73 -APFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        73 -sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p-~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                       +|..+...+..|+.+..  ..++..+....+.+.|+    ++| .|..|                  +|.|.|+.+++.
T Consensus       335 gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~V------------------rG~Gl~~giel~  396 (459)
T PRK11522        335 GNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEA------------------RGKGMLMAIEFV  396 (459)
T ss_pred             CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceeeE------------------EeceeEEEEEec
Confidence             78777777778887642  22344444444444443    244 23333                  467999999996


Q ss_pred             CHHHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe----cCCCHHHHHHHHHHH
Q 027424          145 SLALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKA  217 (223)
Q Consensus       145 ~~~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv----GlEd~~dL~~dl~~A  217 (223)
                      +.+.+..+.+.+   +++-. .+.                           .....+|++.    .-||.+.+++-|+++
T Consensus       397 ~~~~~~~i~~~l~~~Gvl~~-~~~---------------------------~~~~~lr~~Ppl~~t~~~id~~l~~l~~~  448 (459)
T PRK11522        397 DNEIGYNFASEMFRQRVLVA-GTL---------------------------NNAKTIRIEPPLTLTIEQCEQVLKAARKA  448 (459)
T ss_pred             CchHHHHHHHHHHHCCeEEE-ecC---------------------------CCCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence            544455554443   23311 100                           0124466443    346788899999988


Q ss_pred             HhcC
Q 027424          218 LRTG  221 (223)
Q Consensus       218 l~~~  221 (223)
                      |+..
T Consensus       449 l~~~  452 (459)
T PRK11522        449 LAAM  452 (459)
T ss_pred             HHHH
Confidence            8743

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=97.70  E-value=0.0005  Score=62.94  Aligned_cols=173  Identities=15%  Similarity=0.231  Sum_probs=93.0

Q ss_pred             CccccCCEEEEecCCCCCCCcC----cc-cCC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PL-ELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl-~~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|++||+++|+|+.+ +++...    +. .+|  .|+  .|++|.++| +-.+|+ ++.+ +++.+.+...........+
T Consensus       212 l~~~~~~llI~DEv~-tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~g-G~~ig~-~~~~-~~~~~~~~~~~~~~t~~~~  285 (406)
T PRK12381        212 LCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDV--LTTAKALGG-GFPIGA-MLTT-EKCASVMTVGTHGTTYGGN  285 (406)
T ss_pred             HHHHcCCEEEEcchh-hCCCCCcchhhhHhhCCCCCE--EEehhhhhC-CCceEE-EEEc-HHHHhhcCCCCCCCCCCCC
Confidence            488999999999997 433211    11 123  465  589999985 455554 5454 4565544321111111347


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH--HHH
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALS  149 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~--~~~  149 (223)
                      |..+......|+.+..  ..++..++...+.+.|++...    .||-.          ...+|.|.++.+++...  ..+
T Consensus       286 pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~----------~~vrg~Gl~~~~~l~~~~~~~~  351 (406)
T PRK12381        286 PLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINA----RYGLF----------SEIRGLGLLIGCVLNAEYAGKA  351 (406)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh----hCCCE----------EEEecCeEEEEEEecCchhhHH
Confidence            8777777777776532  234455555555555554210    01100          01246788889988432  234


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      ..|.+.+.-  .++.+        .+                 ..++.|||+.-+    |+.+.+++-|+++|+.
T Consensus       352 ~~~~~~l~~--~Gv~v--------~~-----------------~g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~  399 (406)
T PRK12381        352 KQISQEAAK--AGVMV--------LI-----------------AGPNVVRFAPALNISEEEITTGLDRFARACER  399 (406)
T ss_pred             HHHHHHHHH--CCcEE--------ee-----------------CCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            455443321  11110        00                 013569998765    5567777788877763

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=97.69  E-value=0.00059  Score=62.27  Aligned_cols=138  Identities=14%  Similarity=0.211  Sum_probs=75.7

Q ss_pred             CccccCCEEEEecCCCCCCCcC--cc---cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR--PL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~--pl---~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|++||+++|+|+.+. ++...  +.   ..+.+.-+.|++|.+++ +-.+|+ ++.+ +++.+.+...........+|.
T Consensus       213 l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~s~sK~l~~-G~rig~-vv~~-~~i~~~l~~~~~~~t~~~~~~  288 (403)
T PRK05093        213 LCDQHNALLIFDEVQT-GMGRTGDLFAYMHYGVTPDILTSAKALGG-GFPIGA-MLTT-AEIASHFKVGTHGSTYGGNPL  288 (403)
T ss_pred             HHHHcCCEEEEechhh-CCCCCccchhhhhcCCCCCEEEecccccC-CcceEE-EEEc-HHHHhhcCCCCCCCCCCCCHH
Confidence            4889999999999975 33211  11   12322225689999985 555555 5454 455555432111111234677


Q ss_pred             hHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC--HHHHHH
Q 027424           76 DCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKH  151 (223)
Q Consensus        76 da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~--~~~~~~  151 (223)
                      .++..+..|+.+.  ...++..++...+.+.|++...  +  |+-..          ..++.|-++.+++..  .....+
T Consensus       289 ~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~--~~~~~----------~~~~~G~~~~~~l~~~~~~~~~~  354 (403)
T PRK05093        289 ACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQ--K--YGVFS----------EIRGMGLLIGAELKPQYKGRARD  354 (403)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh--h--CCCeE----------eEeeCceEEEEEecCcchhHHHH
Confidence            7777777776653  2345556666777777765421  0  11000          013567778888732  224556


Q ss_pred             HHhhc
Q 027424          152 VVETT  156 (223)
Q Consensus       152 f~~~l  156 (223)
                      |.+.+
T Consensus       355 ~~~~l  359 (403)
T PRK05093        355 FLNAA  359 (403)
T ss_pred             HHHHH
Confidence            66544

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=97.67  E-value=0.0017  Score=60.78  Aligned_cols=105  Identities=22%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             CccccCCEEEEecCCCC-----------CCCcCccc-------CCCcEEEecccccccCCcccceeEEEecChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMS-----------PVLSRPLE-------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-----------~~~~~pl~-------~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~   62 (223)
                      +|+++|++||.|++...           .+....+.       -++|+++.|.+|.+.|.   +||+++.+++++.++++
T Consensus       206 ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~---~GG~i~~~d~~l~~~~~  282 (460)
T PRK13238        206 IAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVN---IGGLLCFRDEDLFTECR  282 (460)
T ss_pred             HHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCc---ceeEEEcChHHHHHHhh
Confidence            48899999999996521           11111111       25899999999987764   48988877777777765


Q ss_pred             HHHHh-cC----CCCChHhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHhcC
Q 027424           63 FLQNA-EG----SGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        63 ~~~~~-~g----~~~sp~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~~~  108 (223)
                      ..... .|    +.+++.+..-+..+|+..  ..+.+...++...|++.|++.
T Consensus       283 ~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~  335 (460)
T PRK13238        283 TLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA  335 (460)
T ss_pred             hcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC
Confidence            44211 12    234555455566666542  234455555778899999875

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=97.67  E-value=0.0034  Score=58.81  Aligned_cols=104  Identities=11%  Similarity=0.067  Sum_probs=60.5

Q ss_pred             ccccCCEEEEecCCCCCCC-----cCcccC-------C-----CcEEEecccccccCCcccceeEEEecChhHHHHHHHH
Q 027424            2 AHAHGALLLVDNSIMSPVL-----SRPLEL-------G-----ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL   64 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~-----~~pl~~-------G-----ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~   64 (223)
                      |+++|++||+|+.++--.+     ..++..       |     -=+++.|+||.++-.|..+|. ++..++.+.+.+...
T Consensus       220 a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~-li~~~~~l~~~~~~~  298 (468)
T PLN02450        220 ITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGA-IYSNDEMVVSAATKM  298 (468)
T ss_pred             HHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEE-EEECCHHHHHHHHHH
Confidence            6789999999999863211     111211       1     128899999999767878765 555555555544433


Q ss_pred             HHhcCCCCChHhHHHHHhcHHH-------HHHHHHHHHhHHHHHHHHHhcC
Q 027424           65 QNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        65 ~~~~g~~~sp~da~ll~~~l~t-------l~~R~~~~~~na~~la~~L~~~  108 (223)
                      . ..+ .++...-+.+...|+.       +....++..++...+.+.|+++
T Consensus       299 ~-~~~-~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~  347 (468)
T PLN02450        299 S-SFG-LVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA  347 (468)
T ss_pred             h-hcC-CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2 223 2344333333333332       2333455666667788888877

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.66  E-value=0.00045  Score=63.93  Aligned_cols=134  Identities=10%  Similarity=0.092  Sum_probs=75.2

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--H-hcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--N-AEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--~-~~g~   70 (223)
                      +|+++|+++|+|+.+ +++.       +.-.....||++  +.|.++| +-...++++. ++++.+.+....  . ..+.
T Consensus       237 lc~~~~~llI~DEv~-tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~g-G~~p~~a~~~-~~~~~~~~~~~~~~~~~~~~  311 (427)
T TIGR00508       237 LCKQYDILLIADEIA-TGFGRTGKLFACEHAGVVPDILC--VGKALTG-GYMTLSATVT-TDKVAQTISSGEAGCFMHGP  311 (427)
T ss_pred             HHHHcCCEEEEeccc-cCCCcCCccchhhhcCCCCCEEE--echhhhc-CcccceEEEE-cHHHHHHHhcCCCCccccCC
Confidence            489999999999996 3331       111223468887  7999975 4333455544 445655543210  0 0111


Q ss_pred             --CCChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           71 --GLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        71 --~~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                        ..+|..+...+..|+.+...  .++..++...+.+.|+...   +  ||...          ..+|.|.+++|++.+.
T Consensus       312 T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~---~--~~~i~----------~vrg~G~~~~i~~~~~  376 (427)
T TIGR00508       312 TFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKRELSPLR---K--NPVVK----------DVRVLGAIGVVEMYKP  376 (427)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh---c--CCCEE----------eEeccccEEEEEECCc
Confidence              23677777777777765321  3555556666666665421   1  23211          1256799999999543


Q ss_pred             HHHHHHHh
Q 027424          147 ALSKHVVE  154 (223)
Q Consensus       147 ~~~~~f~~  154 (223)
                      ..+.++.+
T Consensus       377 ~~~~~~~~  384 (427)
T TIGR00508       377 VNVEELQK  384 (427)
T ss_pred             cCHHHHHH
Confidence            33344443

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=97.66  E-value=0.0018  Score=58.85  Aligned_cols=108  Identities=14%  Similarity=0.047  Sum_probs=58.5

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcc---c-CC-CcEEEecccccccCCcccceeEEEec-ChhH----HHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPL---E-LG-ADIVMHSATKFIAGHSDVMAGVLAVK-GERL----AKELYFLQ   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl---~-~G-ADivv~S~tK~l~G~~d~~~G~v~~~-~~~~----~~~l~~~~   65 (223)
                      +|+++++++|.|+++..-..     ..++   . .+ -=|++.|+||.++-.|..+|.+++.. +.+.    ..++....
T Consensus       200 ~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~  279 (396)
T PRK09257        200 LLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATI  279 (396)
T ss_pred             HHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHh
Confidence            47889999999999853221     0111   1 11 12788999999987788888866422 3332    22332222


Q ss_pred             HhcCCCCChHhHHHHHhcHHH---------HHHHH-HHHHhHHHHHHHHHhcC
Q 027424           66 NAEGSGLAPFDCWICLRGVKT---------MALRV-EKQQDNAQKIAEFLASH  108 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l~t---------l~~R~-~~~~~na~~la~~L~~~  108 (223)
                      .....+.++.....+.+-+++         ...++ ++..++...+.+.|+++
T Consensus       280 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~  332 (396)
T PRK09257        280 RTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAK  332 (396)
T ss_pred             hhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222222344433333333321         11222 44456666677888876

>PRK03321 putative aminotransferase; Provisional

Probab=97.66  E-value=0.00073  Score=60.21  Aligned_cols=163  Identities=12%  Similarity=0.107  Sum_probs=91.2

Q ss_pred             cCCEEEEecCCCCCCCc----CcccC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHh
Q 027424            5 HGALLLVDNSIMSPVLS----RPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD   76 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~----~pl~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~d   76 (223)
                      +|+++|+|+++......    .++..    .=-+++.|+||.++-.|..+|. +++ ++++.+.+....  ...+.++..
T Consensus       176 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~-~v~-~~~~~~~~~~~~--~~~~~s~~~  251 (352)
T PRK03321        176 ADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGY-AVG-HPEVIAALRKVA--VPFSVNSLA  251 (352)
T ss_pred             CCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhh-hcC-CHHHHHHHHHhc--CCCCCCHHH
Confidence            68999999997532211    12221    1127889999999866666655 444 456766665442  223445544


Q ss_pred             HHHHHh---cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHH
Q 027424           77 CWICLR---GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  153 (223)
Q Consensus        77 a~ll~~---~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~  153 (223)
                      .+.+..   ..+.+..++++..++...+.+.|+... +. + +|                ..|..+.+.++.  ...+|.
T Consensus       252 q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~~-~~-~-~~----------------~~g~~i~i~l~~--~~~~~~  310 (352)
T PRK03321        252 QAAAIASLAAEDELLERVDAVVAERDRVRAALRAAG-WT-V-PP----------------SQANFVWLPLGE--RTADFA  310 (352)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-Cc-c-CC----------------CCCCEEEEeCCC--CHHHHH
Confidence            333333   345555666666666677888887753 21 1 12                135556666632  123444


Q ss_pred             hhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 027424          154 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  219 (223)
Q Consensus       154 ~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-Ed~~dL~~dl~~Al~  219 (223)
                      +.+.--.+.+          .|+                 .+.-|||++|- ++.+.+++-|+++++
T Consensus       311 ~~l~~~gI~v----------~~~-----------------~~~~iRi~~~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        311 AAAAEAGVVV----------RPF-----------------AGEGVRVTIGAPEENDAFLRAARAWRA  350 (352)
T ss_pred             HHHHHCCEEE----------Ecc-----------------CCCcEEEeeCCHHHHHHHHHHHHHHhc
Confidence            4432111111          111                 01239999996 568889999988765

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=97.64  E-value=0.0016  Score=60.60  Aligned_cols=131  Identities=14%  Similarity=0.191  Sum_probs=72.8

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC-
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL-   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~-   72 (223)
                      +|+++|+++|+|+... ++       .+.-...-.||++  +.|.++|.---+++ ++.+ +++.+.+....-..+.+. 
T Consensus       253 lc~~~g~llI~DEV~t-G~GRtG~~~a~e~~gv~PDivt--~gK~lg~G~~Piga-vv~~-~~i~~~~~~~~~~~~~T~~  327 (442)
T TIGR03372       253 LCDEFGALLILDEVQT-GMGRTGKMFACEHEGVQPDILC--LAKALGGGVMPIGA-TIAT-EAVFSVLFDNPFLHTTTFG  327 (442)
T ss_pred             HHHHcCCEEEEeeccc-CCCccccchhhhhcCCCCCeee--ehhhhcCCcccceE-EEec-HHHHHhhhccCccccCCCC
Confidence            4889999999999962 22       1211222368887  89999852123555 4454 455554421111233444 


Q ss_pred             -ChHhHHHHHhcHHHHHHHHHHHHhHHHHHHH----HHh----cCC-CeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           73 -APFDCWICLRGVKTMALRVEKQQDNAQKIAE----FLA----SHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        73 -sp~da~ll~~~l~tl~~R~~~~~~na~~la~----~L~----~~p-~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                       +|..+...+..|+.+..  +...+|+.++-+    .|+    ++| .|..|                  +|.|.|+.++
T Consensus       328 gnp~~~Aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~v------------------RG~Gl~~gie  387 (442)
T TIGR03372       328 GNPLACAAALATINELLE--KNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEA------------------RGKGLLMAIE  387 (442)
T ss_pred             CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCceEEE------------------ecceEEEEEE
Confidence             67777777777776632  122333333333    333    344 34443                  4689999999


Q ss_pred             eCCHHHHHHHHhhc
Q 027424          143 TGSLALSKHVVETT  156 (223)
Q Consensus       143 ~~~~~~~~~f~~~l  156 (223)
                      +.+.+...++.+.+
T Consensus       388 l~~~~~~~~i~~~l  401 (442)
T TIGR03372       388 FRDNEIGYAFAKEL  401 (442)
T ss_pred             eCChHHHHHHHHHH
Confidence            96544444554443

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=97.64  E-value=0.00037  Score=64.58  Aligned_cols=166  Identities=15%  Similarity=0.187  Sum_probs=90.7

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH---HhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~---~~~g~   70 (223)
                      +|+++|+++|+|+.+ +++.       +.-...-.||++  +.|.++| +-.-.|+++++ +++.+.+....   -..+.
T Consensus       234 lc~~~g~lLI~DEv~-tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~g-G~~p~~av~~~-~~i~~~~~~~~~~~~~~~~  308 (428)
T PRK07986        234 LCDREGILLIADEIA-TGFGRTGKLFACEHAGIAPDILC--LGKALTG-GTMTLSATLTT-REVAETISNGEAGCFMHGP  308 (428)
T ss_pred             HHHHcCCEEEEeccc-cCCccCCCeeeecccCCCCCEEE--echhhhC-CcccCcchhch-HHHHHHhhcCCCCccccCC
Confidence            478999999999996 4432       111112258886  8999975 32223444444 45655443210   00121


Q ss_pred             --CCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc---CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           71 --GLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        71 --~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~---~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                        .-+|..+...+..|+.+..  ..++..+....+.+.|++   +|.|..                  .+|.|.++++++
T Consensus       309 T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~------------------vRg~Gl~~~ve~  370 (428)
T PRK07986        309 TFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREELAPLRDAPMVAD------------------VRVLGAIGVVET  370 (428)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEe------------------EeccceEEEEEe
Confidence              2367777777777776642  234444445555555543   333333                  346789999998


Q ss_pred             CCHHHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHH
Q 027424          144 GSLALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDK  216 (223)
Q Consensus       144 ~~~~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~  216 (223)
                      .+...+.++.+.+   .++-. + .|                             ..|||+    +.-|+.+.+++-|++
T Consensus       371 ~~~~~~~~~~~~l~~~Gl~~~-~-~g-----------------------------~~i~~~Ppl~it~~ei~~~~~~l~~  419 (428)
T PRK07986        371 TRPVNMAALQRFFVEQGVWIR-P-FG-----------------------------KLIYLMPPYIILPEQLQRLTAAVNR  419 (428)
T ss_pred             CCcccHHHHHHHHHHCCcEEE-e-cC-----------------------------CEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5432233443332   22211 1 12                             234432    455778889999999


Q ss_pred             HHhc
Q 027424          217 ALRT  220 (223)
Q Consensus       217 Al~~  220 (223)
                      +|+.
T Consensus       420 ~l~~  423 (428)
T PRK07986        420 AVQD  423 (428)
T ss_pred             HHhh
Confidence            8864

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=97.64  E-value=0.0051  Score=55.31  Aligned_cols=126  Identities=15%  Similarity=0.179  Sum_probs=72.6

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCC-CcEEEecccccccCCcccceeEEEecChhHHHHHHH-------HH---Hh--
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-------LQ---NA--   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~-------~~---~~--   67 (223)
                      +++.+|++++||.+-+.+.  .|++.- .|+++.|.+|.++-+|   .|++.++++ ..+++..       ..   ..  
T Consensus       158 i~~~~g~~~~VDa~qs~g~--~~idv~~~~~~~ss~~K~lGP~G---~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  231 (355)
T cd00611         158 VPDTGGVPLVADMSSNILS--RPIDVSKFGVIYAGAQKNLGPAG---VTVVIVRKD-LLGKARKITPSMLNYKTHADNNS  231 (355)
T ss_pred             ecccCCCeEEEEccccccC--CCCCHHHhCEEEeecccccCCCc---eEEEEECHH-HHhhcccCCCCcccHHHHHhcCC
Confidence            4677999999999964442  344432 2578888999986333   455656654 3322211       01   11  


Q ss_pred             -cCCCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEE
Q 027424           68 -EGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  140 (223)
Q Consensus        68 -~g~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~s  140 (223)
                       .| +.+-...+.+..+++.+      +.+.++..+.++.+.++|++.|++    |+... .|.    .+    .+.++|
T Consensus       232 ~~~-Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl----~~~~~-~~~----~r----s~~vvs  297 (355)
T cd00611         232 LYN-TPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF----YRGPV-DKR----AR----SRMNVP  297 (355)
T ss_pred             CCC-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccc----cccCC-CHH----Hc----CceEEE
Confidence             12 22223456667777754      344577778888888888888763    32211 111    01    357799


Q ss_pred             EEeCCH
Q 027424          141 FLTGSL  146 (223)
Q Consensus       141 f~~~~~  146 (223)
                      |.+.+.
T Consensus       298 f~~~~~  303 (355)
T cd00611         298 FRLGKE  303 (355)
T ss_pred             EEcCCh
Confidence            998653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=97.64  E-value=0.00047  Score=63.65  Aligned_cols=175  Identities=17%  Similarity=0.186  Sum_probs=89.3

Q ss_pred             CccccCCEEEEecCCCC------CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--C
Q 027424            1 MAHAHGALLLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--L   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--~   72 (223)
                      +|++||+++|+|+.+..      .+.+.-...-.||+  +++|.+++.+.-+++ +++++ ++ ..+.  ....+.+  .
T Consensus       227 lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~--t~~K~l~~~G~piga-v~~~~-~i-~~~~--~~~~~~T~~g  299 (425)
T PRK09264        227 LCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIV--TLSKSISGYGLPMAL-VLIKP-EL-DVWK--PGEHNGTFRG  299 (425)
T ss_pred             HHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEE--EeccccCCCccceEE-EEEch-hh-hccC--CCccCCCCCC
Confidence            48999999999999742      11122222346876  556999976655554 44543 34 2221  1111212  2


Q ss_pred             ChHhHHHHHhcHHHHH-H--HHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHH
Q 027424           73 APFDCWICLRGVKTMA-L--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  149 (223)
Q Consensus        73 sp~da~ll~~~l~tl~-~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~  149 (223)
                      +|..+...+..++.+. .  -.++..++...+.+.|+....    .||...         ...+|.|.++.+++.+.+..
T Consensus       300 np~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~----~~~~~~---------~~vrg~Gl~~~i~l~~~~~~  366 (425)
T PRK09264        300 NNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAA----KYPGLG---------AEVRGRGMMQGIDFGDGELA  366 (425)
T ss_pred             CHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----hCCCce---------ecceecccEEEEEecChHHH
Confidence            4555544444553221 1  123333444444444433110    122110         01246788889999665555


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhc
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  220 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al~~  220 (223)
                      .+|...+.  ..|.-++        |.               |.....||++.-    -|+++.+++.|+++|+.
T Consensus       367 ~~l~~~~~--~~Gv~~~--------~~---------------~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~  416 (425)
T PRK09264        367 GKIAAEAF--ENGLIIE--------TS---------------GPEDEVVKLLPPLTIDEEELEEGLDILEEAVAE  416 (425)
T ss_pred             HHHHHHHH--HCCCEEe--------cc---------------CCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            56654432  1111111        10               011356888844    77888889999888864

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=97.63  E-value=0.0026  Score=57.70  Aligned_cols=166  Identities=16%  Similarity=0.210  Sum_probs=98.7

Q ss_pred             CCEEEEecCCCCCCCcCcccC--CCc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHHH
Q 027424            6 GALLLVDNSIMSPVLSRPLEL--GAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL   81 (223)
Q Consensus         6 g~~lvVDnT~~s~~~~~pl~~--GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll~   81 (223)
                      +..||||+++.-......+.+  .-+  ||+-|+||.++=.|..+|- ++. ++++.+.+...+..+.  ++-.......
T Consensus       177 ~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy-~ia-~~~~i~~l~~vr~p~~--v~~~a~~aa~  252 (356)
T COG0079         177 GGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGY-AIA-NPELIAALNKVRPPFN--VSSPALAAAI  252 (356)
T ss_pred             CcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceee-ccC-CHHHHHHHHHhcCCCC--CCHHHHHHHH
Confidence            889999999743222121211  233  8888999999988888765 434 4567777776665443  2222233333


Q ss_pred             hcH---HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhc--
Q 027424           82 RGV---KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT--  156 (223)
Q Consensus        82 ~~l---~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l--  156 (223)
                      ..+   +.+..+.++..+...++.+.|++++ +..| ||+                .+.-+-+.+.+.+ +..+.+.|  
T Consensus       253 aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v-~pS----------------~aNFvlv~~~~~~-~~~l~~~L~~  313 (356)
T COG0079         253 AALRDADYLEESVERIREERERLYAALKALG-LFGV-FPS----------------QANFVLVRVPDAE-AAALAEALLK  313 (356)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CCee-cCC----------------CCcEEEEECCCcc-HHHHHHHHHH
Confidence            322   4467778889999999999999998 6554 452                3455555554322 22333333  


Q ss_pred             -CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHHh
Q 027424          157 -KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDKALR  219 (223)
Q Consensus       157 -~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd-~~dL~~dl~~Al~  219 (223)
                       +++-             ..+.           . .|..++.+|++||-++ -+-+++-|.+.++
T Consensus       314 ~giiv-------------R~~~-----------~-~~~~~~~lRitvgt~een~~ll~AL~~~~~  353 (356)
T COG0079         314 KGILV-------------RDCS-----------S-VGLLPGYLRITVGTPEENDRLLAALREVLK  353 (356)
T ss_pred             CCEEE-------------EeCC-----------C-CCCCCCeEEEEeCCHHHHHHHHHHHHHHHh
Confidence             3221             1111           0 1235678999999765 4666666666554

>PLN02624 ornithine-delta-aminotransferase

Probab=97.61  E-value=0.0014  Score=61.60  Aligned_cols=167  Identities=16%  Similarity=0.257  Sum_probs=89.7

Q ss_pred             CccccCCEEEEecCCCCCCCcC----c---ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC--C
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----P---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--G   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----p---l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~--~   71 (223)
                      +|++||+++|+|+++. ++...    +   ...-.|+++  +.|.++|..--+++ ++.+ +++...+...  ..+.  +
T Consensus       253 lc~~~gillI~DEv~t-G~GrtG~~~a~~~~~i~pDiv~--lsK~lggG~~piga-v~~~-~~i~~~~~~~--~~~~T~~  325 (474)
T PLN02624        253 LCSKHNVLMIADEIQT-GLARTGKMLACDWEEVRPDVVI--LGKALGGGVIPVSA-VLAD-KDVMLCIKPG--EHGSTFG  325 (474)
T ss_pred             HHHHcCCEEEEecccc-CcCcCcchhhHHhcCCCCCEEE--ecccccCCCCccee-eeec-HHHHhHhccC--CcCCCCC
Confidence            4899999999999974 23211    1   112357776  56999865445555 4444 3454433211  1222  2


Q ss_pred             CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCCC-eeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           72 LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p~-v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      .+|..+......|+.+..  ..++..+....+.+.|+    .+|. +..|                  +|.|.++.|+++
T Consensus       326 g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~v------------------rg~G~~~~i~l~  387 (474)
T PLN02624        326 GNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEV------------------RGRGLLNAVVLN  387 (474)
T ss_pred             CCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEE------------------EeeEEEEEEEec
Confidence            467777777777776542  11222233333333333    2442 2111                  357888888884


Q ss_pred             C----HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHH
Q 027424          145 S----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDK  216 (223)
Q Consensus       145 ~----~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~  216 (223)
                      .    ...+.+|.+.+  ...++-+        .|.                 .++.|||+    +--|+.+++++-|++
T Consensus       388 ~~~~~~~~a~~~~~~L--~e~GV~v--------~p~-----------------~~~~lR~~p~l~~t~e~id~~l~~L~~  440 (474)
T PLN02624        388 SPKLGPVSAYDVCLKL--KERGLLA--------KPT-----------------HDTIIRLAPPLSISEDELQECSKALSD  440 (474)
T ss_pred             CCCcChHHHHHHHHHH--HhCCeEE--------ecC-----------------CCCEEEEECCccCCHHHHHHHHHHHHH
Confidence            2    23455555543  2222111        110                 24678987    345677888888888


Q ss_pred             HHh
Q 027424          217 ALR  219 (223)
Q Consensus       217 Al~  219 (223)
                      +|+
T Consensus       441 ~l~  443 (474)
T PLN02624        441 VLE  443 (474)
T ss_pred             HHH
Confidence            776

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=97.61  E-value=0.0025  Score=57.65  Aligned_cols=138  Identities=19%  Similarity=0.179  Sum_probs=92.4

Q ss_pred             cCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh------cCCCCChHhH
Q 027424            5 HGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA------EGSGLAPFDC   77 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~------~g~~~sp~da   77 (223)
                      -++.++|||-+|-..- +.|.+.|||+++-|+-|-.+|.=--.||.|+++ +++.++.......      .|+++.  .-
T Consensus       189 p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr-~~lVe~~a~RLTaPGiG~e~G~t~~--~~  265 (403)
T PF06838_consen  189 PDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGR-KDLVERAAYRLTAPGIGKEVGATLG--TN  265 (403)
T ss_dssp             TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEES-HHHHHHHHHHHS-TTTGGGSS--TT--TH
T ss_pred             CCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCcCCEEech-HHHHHHHHhhhcCCccccccccCcc--hH
Confidence            3689999999987764 669999999999999999998655668888765 5676665443322      233332  35


Q ss_pred             HHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcC
Q 027424           78 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK  157 (223)
Q Consensus        78 ~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~  157 (223)
                      .++.+||=-.+.-+.+..+.|...|..+++...  +|. |...+ +          ..-=+-++++++++...+|+...+
T Consensus       266 R~~~QGlFlAP~vV~eAlKgaif~A~~fe~lG~--~v~-P~~~~-~----------R~DiIQai~l~~~e~l~~FC~~iQ  331 (403)
T PF06838_consen  266 RLMFQGLFLAPHVVGEALKGAIFAAALFEKLGF--EVS-PKPDD-P----------RSDIIQAIELGSPEKLIAFCQGIQ  331 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---EEE-S-TTS-------------SSS-EEEE-SSHHHHHHHHHHHH
T ss_pred             HHHHhHHhhchHHHHHHHHHHHHHHHHHHHcCC--cCC-CCCCC-C----------CCceEEEEECCCHHHHHHHHHHHH
Confidence            567778777777778889999999999998764  444 32111 1          133466788899999999998876


Q ss_pred             cc
Q 027424          158 YF  159 (223)
Q Consensus       158 l~  159 (223)
                      -.
T Consensus       332 ~~  333 (403)
T PF06838_consen  332 AA  333 (403)
T ss_dssp             HT
T ss_pred             hc
Confidence            54

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=97.60  E-value=0.0041  Score=58.73  Aligned_cols=105  Identities=9%  Similarity=0.003  Sum_probs=57.7

Q ss_pred             CccccCCEEEEecCCCCCCCc----Ccc-cC---------CCc--EEEecccccccCCcccceeEEEecChhHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RPL-EL---------GAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~pl-~~---------GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~   64 (223)
                      +|+++++.||+|+.++.-.+.    .++ ++         ..|  +|+.|++|.++-.|..+|. ++..++.+.+.++..
T Consensus       227 ~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~-li~~~~~l~~~~~~~  305 (496)
T PLN02376        227 FVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGI-VYSFNDSVVSCARKM  305 (496)
T ss_pred             HHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEE-EEECCHHHHHHHHHH
Confidence            367899999999998643211    111 11         113  4579999999877888865 445555565544333


Q ss_pred             HHhcCCCCChHhHHHHHhcHHH--H-HH---H-HHHHHhHHHHHHHHHhcC
Q 027424           65 QNAEGSGLAPFDCWICLRGVKT--M-AL---R-VEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        65 ~~~~g~~~sp~da~ll~~~l~t--l-~~---R-~~~~~~na~~la~~L~~~  108 (223)
                      . ..+ .+|....+++..-|+.  + ..   + .++..++-..+.+.|+++
T Consensus       306 ~-~~~-~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~  354 (496)
T PLN02376        306 S-SFG-LVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA  354 (496)
T ss_pred             h-hcC-CCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            2 233 2455444444443332  2 11   1 133344445566777764

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=97.60  E-value=0.0042  Score=55.98  Aligned_cols=127  Identities=16%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHH--------HH--HH-hc
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY--------FL--QN-AE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~--------~~--~~-~~   68 (223)
                      +++.++++++||.+-+-+.  .|++. ..|+++-|.+|.++-+|   .|++..+++ ..+++.        +.  .. ..
T Consensus       150 l~~~~~~l~iVDavss~g~--~~id~~~~d~~~~ssqK~lgP~G---lg~l~~s~~-~~~~~~~~~~~~~~~~~~~~~~~  223 (349)
T TIGR01364       150 LPDVKNAPLVADMSSNILS--RPIDVSKFGLIYAGAQKNIGPAG---LTVVIVRKD-LLGRASRITPSMLNYKIHAENDS  223 (349)
T ss_pred             ecccCCCeEEEEccccccC--ccCCHHHccEEEEecccccCCCc---eEEEEECHH-HHhhcccCCCCcchHHHHHhcCC
Confidence            4678899999999954332  33332 24699999999997443   455666654 333221        11  10 11


Q ss_pred             CC-CCChHhHHHHHhcHHH------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           69 GS-GLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        69 g~-~~sp~da~ll~~~l~t------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      .. +.+-.-.+.+..+|+.      +..+.+++.+.+..+.++|++.|.   +.-+..  .|..    +    .+.+++|
T Consensus       224 ~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~g---l~~~~~--~~~~----r----s~~v~sf  290 (349)
T TIGR01364       224 MYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNG---FYRNPV--DPRN----R----SRMNVVF  290 (349)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCC---eeccCC--CHHH----c----CCeEEEE
Confidence            01 2222344555556664      345567888888999999999876   222211  1110    1    3578999


Q ss_pred             EeCCH
Q 027424          142 LTGSL  146 (223)
Q Consensus       142 ~~~~~  146 (223)
                      .+.+.
T Consensus       291 ~~~~~  295 (349)
T TIGR01364       291 TLGNE  295 (349)
T ss_pred             ecCCh
Confidence            88543

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.57  E-value=0.0038  Score=63.30  Aligned_cols=114  Identities=30%  Similarity=0.339  Sum_probs=70.1

Q ss_pred             CccccCCEEEEecCCCCC--CCcCcccCCCcEEEecccccccCC---cccceeEEEecChhHHHHHHHHH-------Hhc
Q 027424            1 MAHAHGALLLVDNSIMSP--VLSRPLELGADIVMHSATKFIAGH---SDVMAGVLAVKGERLAKELYFLQ-------NAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~--~~~~pl~~GADivv~S~tK~l~G~---~d~~~G~v~~~~~~~~~~l~~~~-------~~~   68 (223)
                      +||++|+++.||.+.+..  .+.+|.++|||+++-|+||+|+++   |.--.|.+.++. .+...+....       ...
T Consensus       665 i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~-~l~p~lpg~~v~~~~~~~~~  743 (954)
T PRK05367        665 IVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKA-HLAPFLPGHPVQIAGGETGI  743 (954)
T ss_pred             HHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecc-cccccCCCCccCcCCCCCCc
Confidence            479999999999998532  245788999999999999998633   122256666653 2221111000       001


Q ss_pred             CCCC-ChH---------hHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCC
Q 027424           69 GSGL-APF---------DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  118 (223)
Q Consensus        69 g~~~-sp~---------da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~  118 (223)
                      |... +++         -.|+.+.|-+-+..+.++...||..+++.|+++.   .|.|++
T Consensus       744 g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~---~~~~~~  800 (954)
T PRK05367        744 GAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHY---PVLYTG  800 (954)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhc---CccccC
Confidence            1111 121         1233445666677777888889999999998763   455654

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=97.56  E-value=0.0088  Score=54.62  Aligned_cols=107  Identities=21%  Similarity=0.167  Sum_probs=58.0

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc-C-CC-c--EEEecccccccCCcccceeEEEecChhHHHHH----------
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE-L-GA-D--IVMHSATKFIAGHSDVMAGVLAVKGERLAKEL----------   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~-~-GA-D--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l----------   61 (223)
                      +|+++|++||+|++++....    ..++. + +. +  |++.|++|.++-.|..+|.++ +. +++.+.+          
T Consensus       204 ~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i-~~-~~li~~~~~~~~~~~~~  281 (409)
T PRK07590        204 YAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTV-VP-KELKGKTSDGEGVSLNS  281 (409)
T ss_pred             HHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEE-cC-HHHhhhccccchhhhHH
Confidence            36889999999999853211    11221 1 21 2  678999999987788876644 44 4454411          


Q ss_pred             -H-HHHHhcCCCCChHhHHHHHhcH----HH-HHHHHHHHHhHHHHHHHHHhcCC
Q 027424           62 -Y-FLQNAEGSGLAPFDCWICLRGV----KT-MALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        62 -~-~~~~~~g~~~sp~da~ll~~~l----~t-l~~R~~~~~~na~~la~~L~~~p  109 (223)
                       . .........++......+...+    +. +....++..++...+.+.|+.+.
T Consensus       282 ~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  336 (409)
T PRK07590        282 LWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAG  336 (409)
T ss_pred             HHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             1 1111111123443222222222    22 22233555667777889998873

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=97.55  E-value=0.0012  Score=60.77  Aligned_cols=131  Identities=18%  Similarity=0.186  Sum_probs=67.9

Q ss_pred             CccccCCEEEEecCCCC------CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--C
Q 027424            1 MAHAHGALLLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--L   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--~   72 (223)
                      +|+++|+++|+|+....      .+.+.-...-.||++  ++|.++|.+.-+|+ ++.+++ + ..+..  ...+.+  -
T Consensus       223 lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg~~G~piga-v~~~~~-~-~~~~~--~~~~~T~~g  295 (412)
T TIGR02407       223 LCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVC--LSKSISGYGLPLAL-TLIKPE-L-DVWKP--GEHNGTFRG  295 (412)
T ss_pred             HHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEE--echhccCCccceeE-EEEchh-h-hccCC--CccCCCCCc
Confidence            48999999999998631      112222334578776  56999975555555 545543 3 22211  112222  3


Q ss_pred             ChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHH----h----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           73 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFL----A----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L----~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      +|..+......++.+..+ .+..+++.++.++|    +    .+|.+. +.                .+|.|.++.+++.
T Consensus       296 npl~~aaa~a~l~~~i~~-~~l~~~~~~~g~~l~~~l~~l~~~~~~~~-~~----------------vrg~Gl~~~l~l~  357 (412)
T TIGR02407       296 NNLAFVTATAALEYYWSD-DAFEKAVQRKSEIIQERLDRIVAEYPELI-KQ----------------VRGRGLMQGIECG  357 (412)
T ss_pred             cHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHhhCCCce-Ee----------------eecceeEEEEEec
Confidence            565555545555542111 22333333333333    2    244210 11                2467889999996


Q ss_pred             CHHHHHHHHhhc
Q 027424          145 SLALSKHVVETT  156 (223)
Q Consensus       145 ~~~~~~~f~~~l  156 (223)
                      +.+.+.+|.+.+
T Consensus       358 ~~~~~~~~~~~~  369 (412)
T TIGR02407       358 DGDLAGKIAKAA  369 (412)
T ss_pred             ChHHHHHHHHHH
Confidence            555555665543

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PLN02724 Molybdenum cofactor sulfurase

Probab=97.54  E-value=0.011  Score=59.13  Aligned_cols=48  Identities=21%  Similarity=0.142  Sum_probs=33.8

Q ss_pred             CCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecCh
Q 027424            6 GALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE   55 (223)
Q Consensus         6 g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~   55 (223)
                      +++++||.+-+.+. ..+.-++|+|+++-|.||+++|+.  =.|++.++++
T Consensus       230 ~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~--G~G~L~vr~~  278 (805)
T PLN02724        230 RWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPT--GLGALLVRRD  278 (805)
T ss_pred             ceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCC--CceEEEEehh
Confidence            46899999965543 233335699999999999998763  1456666653

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=97.53  E-value=0.0033  Score=58.51  Aligned_cols=171  Identities=18%  Similarity=0.216  Sum_probs=90.9

Q ss_pred             CccccCCEEEEecCCC-C-----CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-------HHh
Q 027424            1 MAHAHGALLLVDNSIM-S-----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNA   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~-s-----~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-------~~~   67 (223)
                      +|+++|+++|+|+... -     .+.+.-...-.||+  .+.|.++|..--+++ ++.+ +++.+.+..-       ...
T Consensus       244 lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv--t~gK~l~gG~~P~ga-v~~~-~~i~~~~~~~~~~~~~~~~~  319 (442)
T PRK13360        244 ICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL--TCAKGLTNGAIPMGA-VFVS-SEIHDAFMQGPEAGIEFFHG  319 (442)
T ss_pred             HHHHcCCEEEEechhhCCCCCccchhhhhcCCCCcee--eeeeccccCccceEE-EEEc-HHHHHHhhcCCccccccccC
Confidence            4889999999999862 1     11122122235776  679999863234566 4444 4554443210       011


Q ss_pred             cCCCCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc---CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           68 EGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        68 ~g~~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~---~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      .....+|..+...+..|+.+..  ..++..++...+.+-|++   +|.|..|                  +|.|.++.++
T Consensus       320 ~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v------------------rG~Gl~~~~~  381 (442)
T PRK13360        320 YTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVIDI------------------RNLGLVGAVE  381 (442)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeeee------------------eccceEEEEE
Confidence            1112477777777777776632  123334444444444432   3333332                  4567777777


Q ss_pred             eCC-----HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHH
Q 027424          143 TGS-----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISD  213 (223)
Q Consensus       143 ~~~-----~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~d  213 (223)
                      +..     .+.+.++.+.+  +..|.-+        .+                  ..+.+||+    +.-|+++.+++.
T Consensus       382 l~~~~~~~~~~~~~~~~~l--~~~Gvl~--------~~------------------~~~~lr~~Ppl~~t~~eid~~~~~  433 (442)
T PRK13360        382 LAPRDGKPGKRAYEVFLKC--FEKGLMI--------RY------------------TGDILALSPPLIIEEAQIDELFDI  433 (442)
T ss_pred             EecCCCCcchhHHHHHHHH--HHCCcEE--------Ee------------------cCCEEEEeCCCccCHHHHHHHHHH
Confidence            621     12233433322  1111110        00                  12457877    777889999999


Q ss_pred             HHHHHhcC
Q 027424          214 LDKALRTG  221 (223)
Q Consensus       214 l~~Al~~~  221 (223)
                      |+++|+.+
T Consensus       434 l~~~l~~~  441 (442)
T PRK13360        434 LAQALKET  441 (442)
T ss_pred             HHHHHHHh
Confidence            99998753

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=97.53  E-value=0.0011  Score=61.25  Aligned_cols=175  Identities=17%  Similarity=0.239  Sum_probs=91.1

Q ss_pred             CccccCCEEEEecCCCCCCCcC--cc---cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC--CCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR--PL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--GLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~--pl---~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~--~~s   73 (223)
                      +|++||+++|+|+.++ ++...  .+   .+|...-+.++.|.++| +--+| +++.+ +++.+.+...  ..+.  ..+
T Consensus       236 lc~~~g~llI~DEv~t-G~gr~G~~~~~~~~gv~pDi~t~sK~lg~-G~pig-av~~~-~~i~~~~~~~--~~~~T~~~n  309 (433)
T PRK08117        236 ICDRHGILLIFDEVQT-GFGRTGEWFAAQTFGVVPDIMTIAKGIAS-GLPLS-AVVAS-KELMEQWPLG--SHGTTFGGN  309 (433)
T ss_pred             HHHHcCCEEEEecchh-ccCccccchhHhhcCCCCCEeehhhhccC-CCcce-eEEEc-HHHHhhccCC--CCCCCCCcC
Confidence            4889999999999985 33211  11   13443334699999985 44455 45454 4554443211  1222  247


Q ss_pred             hHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC------
Q 027424           74 PFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS------  145 (223)
Q Consensus        74 p~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~------  145 (223)
                      |..+...+..|+.+...  +++..++...+.+.|+...    -.||-..          ..+|.|-|+.+++..      
T Consensus       310 p~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~----~~~~~~~----------~vrg~Gl~~gi~~~~~~~~~~  375 (433)
T PRK08117        310 PVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLK----EKHPVIG----------DVRGIGLMIGIEIVDPDGEPD  375 (433)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----hcCCcee----------eeecCCcEEEEEEecCCCCcc
Confidence            77777777777766321  2333333333333333210    0122110          135678888998821      


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHhc
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~Al~~  220 (223)
                      .+....+.+.+.  ..|+-+        .|.               |-..+.+||+    +--|+.+++++-|+++++.
T Consensus       376 ~~~~~~~~~~l~--~~Gv~~--------~~~---------------g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~  429 (433)
T PRK08117        376 GDAVEKILDKCL--EKGLLF--------YLC---------------GNAGNVLRMIPPLTVTKEEIDEGLDILDEALTE  429 (433)
T ss_pred             hHHHHHHHHHHH--HCCCEE--------eec---------------CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            122334433321  111111        010               0123578887    4456788888888888864

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=97.52  E-value=0.0012  Score=61.03  Aligned_cols=119  Identities=13%  Similarity=0.190  Sum_probs=67.1

Q ss_pred             CccccCCEEEEecCCCCCCCc--C--cc-cCC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS--R--PL-ELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~--~--pl-~~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+.+. ++..  .  +. .+|  .|++  +++|.++| +--+|+ ++++ +++.+.+...........+
T Consensus       227 lc~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~pDiv--~~sK~l~~-G~piga-v~~~-~~i~~~~~~~~~~~T~~~~  300 (421)
T PRK06777        227 LCDEHGILLIADEVQT-GFARTGKLFAMEYYDVKPDLI--TMAKSLGG-GMPISA-VVGR-AEVMDAPAPGGLGGTYAGN  300 (421)
T ss_pred             HHHHcCCEEEEechhh-CCccCCchhhhhhcCCCCCEE--eeehhhcC-CCceEE-EEEc-HHHHhccCCCCCCCCCCcC
Confidence            4789999999999964 2211  1  11 123  6766  69999984 445554 5454 4565544321111111247


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc----CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      |..+...+..|+.+..  .+++..+....+.+.|++    +|.+..|                  +|.|.|+.+++
T Consensus       301 p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~G~~~~i~~  358 (421)
T PRK06777        301 PLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDI------------------RARGSMVAVEF  358 (421)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEe------------------cCceEEEEEEE
Confidence            7777777777776532  123334444444444443    4444333                  46899999887

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=97.52  E-value=0.0012  Score=61.37  Aligned_cols=119  Identities=15%  Similarity=0.228  Sum_probs=66.1

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+... ++.       +.-...-.||++-|  |.++| +--+++ ++.+ +++.+.+..........-+
T Consensus       248 lc~~~gillI~DEV~t-GfgRtG~~fa~~~~gv~PDiv~~g--K~l~~-G~Pi~a-v~~~-~~i~~~~~~~~~~~T~~gn  321 (443)
T PRK06058        248 WCRENGVVFIADEVQT-GFARTGAWFACEHEGIVPDLITTA--KGIAG-GLPLSA-VTGR-AEIMDAPHPGGLGGTYGGN  321 (443)
T ss_pred             HHHHcCCEEEEecccc-CCCcChhhhHHHhcCCCCCEEEEc--ccccC-CCccEE-EEEc-HHHHhhccCCCCCCCCCCC
Confidence            4899999999999963 221       11111225888774  99986 445554 5454 4554443211111111246


Q ss_pred             hHhHHHHHhcHHHHHH-H-HHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           74 PFDCWICLRGVKTMAL-R-VEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        74 p~da~ll~~~l~tl~~-R-~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      |..+...+..|+.+.. . .++..+....+.+.|+    ++|.|..|                  +|.|.|+.+++
T Consensus       322 pl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~G~~~~i~~  379 (443)
T PRK06058        322 PVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDV------------------RGRGAMIAIEL  379 (443)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEee------------------eccceEEEEEE
Confidence            7777777777776532 1 1233333333444443    35544444                  36899999998

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=97.51  E-value=0.00065  Score=64.57  Aligned_cols=114  Identities=19%  Similarity=0.180  Sum_probs=73.0

Q ss_pred             CccccCCEEEEecCCCCCCCcCc-----cc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP-----LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p-----l~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~------   67 (223)
                      +|+++|+++.||.+++.+....+     ++  .+||.++-|.||++.|+-  -+|++..+++...+.+.....+      
T Consensus       290 i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~--g~G~llvr~~~~~~~~~~~~~Yl~~~~~  367 (522)
T TIGR03799       290 IAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPM--GAGMVLFKDPALMSAIEHHAEYILRKGS  367 (522)
T ss_pred             HHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCc--ccEEEEEeCHHHHHHhccCcchhcCCCC
Confidence            47899999999999987654333     22  279999999999988763  3477777765543333221001      


Q ss_pred             -------cCCCCChHh---HHHHHhcHH--HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           68 -------EGSGLAPFD---CWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        68 -------~g~~~sp~d---a~ll~~~l~--tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                             +..+ -|..   .|..++.+.  -+...+++..+.|+.+++.|+++|.++-+.-|
T Consensus       368 ~d~~~~~legs-R~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p  428 (522)
T TIGR03799       368 KDLGSHTLEGS-RPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEP  428 (522)
T ss_pred             CccccceeecC-cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC
Confidence                   1111 1222   333333332  24566788899999999999999987555433

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=97.50  E-value=0.0056  Score=57.05  Aligned_cols=105  Identities=11%  Similarity=0.048  Sum_probs=60.3

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Cccc----CC----Cc--EEEecccccccCCcccceeEEEecChhHHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPLE----LG----AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl~----~G----AD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~   65 (223)
                      +|+++++.+|+|+.++--.+-     ..++    .+    .+  +++.|++|.++-.|..+|. ++..++.+.+.++...
T Consensus       228 ~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~-ivs~n~~l~~~~~~~~  306 (447)
T PLN02607        228 FVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGT-IYSYNDKVVTTARRMS  306 (447)
T ss_pred             HHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEE-EEEcCHHHHHHHHHHh
Confidence            367899999999997532211     1111    11    12  7889999999878888865 5454555655554332


Q ss_pred             HhcCCCCChHhHHHHHhcHHH-------HHHHHHHHHhHHHHHHHHHhcC
Q 027424           66 NAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l~t-------l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .. . .+|......+.+-|+.       +...-++..++...+.++|+.+
T Consensus       307 ~~-~-~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~  354 (447)
T PLN02607        307 SF-T-LVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA  354 (447)
T ss_pred             hc-C-CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            22 2 2343333333333332       1222345566777788899876

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=97.45  E-value=0.0021  Score=60.06  Aligned_cols=122  Identities=18%  Similarity=0.237  Sum_probs=67.5

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|+.....      +.+.-...-.||++  +.|-++|.---+++ ++.++ ++...............+|
T Consensus       257 lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~~P~~a-v~~~~-~i~~~~~~~~~~~T~~gnp  332 (459)
T PRK06082        257 ICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGGGLVPIAA-MITKD-KYNTAAQISLGHYTHEKSP  332 (459)
T ss_pred             HHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEE--ecccccCCCCcceE-EEEcH-HHHhhccCCCCCCCCCcCH
Confidence            488999999999996321      11111222369887  89999973223444 44443 4432211000011122477


Q ss_pred             HhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           75 FDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        75 ~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      ..+...+..|+.+..  ..++..+....+.+.|+    +||.|..|                  +|.|.|+.+++.
T Consensus       333 l~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rG~Gl~~~ve~~  390 (459)
T PRK06082        333 LGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDV------------------RGIGLLWGVELV  390 (459)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeee------------------eeccceeEEEEc
Confidence            777777777777642  12344444444444443    24544443                  468999999983

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.43  E-value=0.00075  Score=62.41  Aligned_cols=122  Identities=14%  Similarity=0.180  Sum_probs=66.9

Q ss_pred             CccccCCEEEEecCCCCCCCcC----ccc-CC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHH----HhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl~-~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~----~~~g   69 (223)
                      +|+++|+++|+|+.. +++...    ..+ +|  .||+  .+.|.++| +-...|+++++ +++.+.+....    -..+
T Consensus       230 lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDi~--t~gK~l~g-G~~p~~av~~~-~~i~~~~~~~~~~~~~~h~  304 (422)
T PRK05630        230 LCDKHDILLIADEIA-TGFGRTGELFATLAAGVTPDIM--CVGKALTG-GFMSFAATLCT-DKVAQLISTPNGGGALMHG  304 (422)
T ss_pred             HHHHcCCEEEEecce-eCCCcCchhhHHHhcCCCCCee--eeechhhc-Cccccceeecc-HHHHHHHhccCCCCccccC
Confidence            488999999999996 443211    011 23  5777  66899975 22234555554 45555442110    0112


Q ss_pred             C--CCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh---cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           70 S--GLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA---SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        70 ~--~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~---~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      .  ..+|..+...+..|+.+..  ..++..+....+.+.|+   ++|.|..                  .+|.|.|++++
T Consensus       305 ~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~------------------vRg~Gl~~~ie  366 (422)
T PRK05630        305 PTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGLSPLAHLPGVAD------------------VRVLGAIGVVE  366 (422)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhcCCCeee------------------eeccccEEEEE
Confidence            1  2467777777777777642  12333444444444343   2333322                  35789999999


Q ss_pred             eCC
Q 027424          143 TGS  145 (223)
Q Consensus       143 ~~~  145 (223)
                      +.+
T Consensus       367 ~~~  369 (422)
T PRK05630        367 MEQ  369 (422)
T ss_pred             ECC
Confidence            954

>PLN02672 methionine S-methyltransferase

Probab=97.42  E-value=0.0078  Score=61.61  Aligned_cols=108  Identities=12%  Similarity=0.061  Sum_probs=61.2

Q ss_pred             CccccCCEEEEecCCCCCCC-cCc-----cc-----CC------CcEEEecccccccCCcccceeEEEecChhHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRP-----LE-----LG------ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~p-----l~-----~G------ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~   63 (223)
                      +|+++|++||+|+.+.--.+ ..+     +.     +.      .=|++.|++|.++-.|..+|.++ ++++.+.+.+..
T Consensus       857 la~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylI-ap~~eLi~~l~~  935 (1082)
T PLN02672        857 VCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLA-LNDSVLIDAFHS  935 (1082)
T ss_pred             HHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEE-eCCHHHHHHHHH
Confidence            36889999999999852111 000     11     11      12678899999998888887655 555557676655


Q ss_pred             HHHhcCCCC-ChHhHHHHHhcH-------HH-HHHHHHHHHhHHHHHHHHHhcCC
Q 027424           64 LQNAEGSGL-APFDCWICLRGV-------KT-MALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        64 ~~~~~g~~~-sp~da~ll~~~l-------~t-l~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .....+... +...+..++..+       .. +....+...++...+.++|+++.
T Consensus       936 ~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~G  990 (1082)
T PLN02672        936 APGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACG  990 (1082)
T ss_pred             hhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            433322211 111122122111       11 22233556777888999999873

>PRK07678 aminotransferase; Validated

Probab=97.38  E-value=0.0056  Score=57.10  Aligned_cols=178  Identities=20%  Similarity=0.241  Sum_probs=94.8

Q ss_pred             CccccCCEEEEecCCCC----C--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH----HhcCC
Q 027424            1 MAHAHGALLLVDNSIMS----P--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----NAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~----~~~g~   70 (223)
                      +|+++|+++|+|+....    +  +.+.-...-.||++-  .|-++|..--+++ ++++ +++.+.+..-.    -..+.
T Consensus       242 lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~--gK~lggG~~Pi~a-v~~~-~~i~~~~~~~~~~~~~~h~~  317 (451)
T PRK07678        242 ICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITM--AKGITSAYLPLSA-TAVK-KEIYEAFKGKGEYEHFRHVN  317 (451)
T ss_pred             HHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEe--ecccccCCcceeE-EEEc-HHHHHHHhccCcccccccCC
Confidence            48999999999998521    1  112212223698854  8999974233444 5454 45555443100    01121


Q ss_pred             --CCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHH----hcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           71 --GLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL----ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        71 --~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L----~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                        .-+|..+...+..|+.+..  ..++..+....+.+.|    ++||.|..|.                  |.|.|+.++
T Consensus       318 T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vr------------------g~Gl~~~i~  379 (451)
T PRK07678        318 TFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIR------------------GKGLLVGIE  379 (451)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE------------------eeceEEEEE
Confidence              2467777777777777643  1233344444444433    3455554443                  678999999


Q ss_pred             eC-C--------HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHH
Q 027424          143 TG-S--------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVND  209 (223)
Q Consensus       143 ~~-~--------~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~d  209 (223)
                      +. +        .+.+.++.+.+.  ..|.-+..     ..|...              -....|||+    +--||++.
T Consensus       380 ~~~~~~~~~~~~~~~a~~i~~~l~--~~Gv~~~~-----~g~~v~--------------~~~~~lrl~Ppl~it~~eid~  438 (451)
T PRK07678        380 LVNDKETKEPADNDKVASVVAACK--EKGLIIGK-----NGDTVA--------------GYNNVLTLSPPLVISSEEIAF  438 (451)
T ss_pred             EecCCcccCcCchHHHHHHHHHHH--HCCcEEee-----cCcccc--------------CCCCEEEEECCCcCCHHHHHH
Confidence            82 1        122444443321  11111100     001000              013568885    45578999


Q ss_pred             HHHHHHHHHhcC
Q 027424          210 LISDLDKALRTG  221 (223)
Q Consensus       210 L~~dl~~Al~~~  221 (223)
                      +++-|+++|+++
T Consensus       439 ~~~~l~~~l~~~  450 (451)
T PRK07678        439 IVGTLKTALERI  450 (451)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=97.38  E-value=0.0026  Score=58.72  Aligned_cols=50  Identities=38%  Similarity=0.551  Sum_probs=34.8

Q ss_pred             CccccCCEEEE--ecCCCCCCCcCcccCCCcEEEeccccc-----ccCCcccceeEEEecC
Q 027424            1 MAHAHGALLLV--DNSIMSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKG   54 (223)
Q Consensus         1 ia~~~g~~lvV--DnT~~s~~~~~pl~~GADivv~S~tK~-----l~G~~d~~~G~v~~~~   54 (223)
                      +||++|++++|  |.. ..+....|-++|+|+++.|..|+     ++|++   +|.+.+++
T Consensus       228 ~a~~~~~~~iv~~d~~-~~g~~~~~~~~~~D~~~~s~~k~~~~~~~~Gpg---~G~l~~~~  284 (447)
T PRK00451        228 IAHAGGALFIVGVDPV-SLGLLKPPGEYGADIVVGEGQPLGIPLSFGGPY---LGFFATRK  284 (447)
T ss_pred             HHHHCCCEEEEEcChH-HhccCCCcccCCCCEEEECCCcCCCCCCCCCCC---chHHHhhH
Confidence            47899999998  533 33444566788999999987775     66664   55554443

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=97.37  E-value=0.0021  Score=59.33  Aligned_cols=82  Identities=11%  Similarity=0.085  Sum_probs=44.3

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|+....-      +.+.-+..-.|  +.++.|.++| +--+|+ ++++ +++.+.+..........-+|
T Consensus       227 lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pD--i~t~gK~l~~-G~piga-v~~~-~~i~~~~~~~~~~~T~~gnp  301 (421)
T PRK09792        227 LCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPD--LMTMAKSLAG-GMPLSG-VVGN-ANIMDAPAPGGLGGTYAGNP  301 (421)
T ss_pred             HHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCc--EEEeehhhcC-CCceEE-EEEc-HHHHhccCCCCcCCCCCCCH
Confidence            478999999999985321      11111112357  4688999986 455665 5454 45554432111111112366


Q ss_pred             HhHHHHHhcHHHH
Q 027424           75 FDCWICLRGVKTM   87 (223)
Q Consensus        75 ~da~ll~~~l~tl   87 (223)
                      ..+...+..++.+
T Consensus       302 l~~aaa~a~l~~l  314 (421)
T PRK09792        302 LAVAAAHAVLNII  314 (421)
T ss_pred             HHHHHHHHHHHHH
Confidence            6665555555544

>PRK02769 histidine decarboxylase; Provisional

Probab=97.37  E-value=0.0028  Score=57.89  Aligned_cols=113  Identities=17%  Similarity=0.243  Sum_probs=68.3

Q ss_pred             CccccC---CEEEEecCCCCCCCc---C--ccc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-----
Q 027424            1 MAHAHG---ALLLVDNSIMSPVLS---R--PLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-----   65 (223)
Q Consensus         1 ia~~~g---~~lvVDnT~~s~~~~---~--pl~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-----   65 (223)
                      +|+++|   +++.||.+++.+...   .  ++.  .|+|.++-|.||+++++-  -.|++..+++.+ ..+....     
T Consensus       185 i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~--g~G~l~~r~~~~-~~~~~~~~yl~~  261 (380)
T PRK02769        185 ILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPM--PCGIVLAKKKYV-ERISVDVDYIGS  261 (380)
T ss_pred             HHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCC--CcEEEEEehhhh-hhcccCccccCC
Confidence            467887   699999999874331   1  232  289999999999998653  356666765432 3321100     


Q ss_pred             ---HhcCCCCChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCC
Q 027424           66 ---NAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  118 (223)
Q Consensus        66 ---~~~g~~~sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~  118 (223)
                         ...| +-+...+..+-..|+.     +..+.++..+.++.+.+.|++. ++.-+..|.
T Consensus       262 ~d~t~~G-SR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~  320 (380)
T PRK02769        262 RDQTISG-SRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPN  320 (380)
T ss_pred             CCCCccC-CCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCC
Confidence               0112 2221222223333333     5667788899999999999774 455555563

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=97.33  E-value=0.0033  Score=55.96  Aligned_cols=101  Identities=11%  Similarity=0.082  Sum_probs=59.7

Q ss_pred             ccCCEEEEecCCCCCCCcCc---ccCC-CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHH
Q 027424            4 AHGALLLVDNSIMSPVLSRP---LELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI   79 (223)
Q Consensus         4 ~~g~~lvVDnT~~s~~~~~p---l~~G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~l   79 (223)
                      ++|+++|+|+++........   ++.. -=|++.|+||.++-.|..+|.++ . ++++.+.+.......  ..+....+.
T Consensus       167 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv-~-~~~~i~~~~~~~~~~--~~~~~~q~~  242 (337)
T PRK03967        167 ETGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAI-A-NEEIIDALYRIKPPF--SLNILTMKI  242 (337)
T ss_pred             hcCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeee-c-CHHHHHHHHhhcCCC--CCCHHHHHH
Confidence            46999999999853211111   1111 12888999999986787876654 4 456666665544332  234444444


Q ss_pred             HHhcHH---HHHHHHHHHHhHHHHHHHHHhcC
Q 027424           80 CLRGVK---TMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        80 l~~~l~---tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      +...++   .+..++++..++...+.+.|..+
T Consensus       243 ~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  274 (337)
T PRK03967        243 VRLALDHYDLIEERIDYIIKERERVRRELGEY  274 (337)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            443333   33445556666777788888764

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=97.32  E-value=0.0017  Score=60.49  Aligned_cols=119  Identities=17%  Similarity=0.213  Sum_probs=65.6

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++.. +.       +.-...-.|++  +++|.+++ +-.+|+ ++++ +++.+.+...........+
T Consensus       233 l~~~~g~llI~DEv~~g-~gr~G~~~a~~~~~~~pDii--tlsK~l~~-G~piga-v~~~-~~i~~~~~~~~~~~T~~~~  306 (443)
T PRK08360        233 ILDEHGILLVVDEVQSG-LGRTGKWFAIEHFGVEPDII--TLGKPLGG-GLPISA-TIGR-AEIMDSLPPLAHAFTLSGN  306 (443)
T ss_pred             HHHHcCCEEEEeccccC-CCcCccchhhhhcCCCCCEE--EecccccC-CceeEE-EEEc-HHHHhhhcCCCCCCCCCcC
Confidence            47899999999999742 21       11111224765  67999995 444544 5554 4565554322111122346


Q ss_pred             hHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           74 PFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        74 p~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      |..+......|+.+...  .++..+....+.+.|+    .+|.|..|                  +|.|.|+.+++
T Consensus       307 p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v------------------rg~Gl~~gie~  364 (443)
T PRK08360        307 PVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDV------------------RGIGLMIGVDL  364 (443)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeee------------------eccceEEEEEE
Confidence            76666666777665321  2333333333333333    34544333                  46899999998

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=97.31  E-value=0.0022  Score=65.14  Aligned_cols=54  Identities=24%  Similarity=0.308  Sum_probs=41.0

Q ss_pred             CccccCCEEEEecCCCCCC--CcCcccCCCcEEEecccccccCCc---ccceeEEEecC
Q 027424            1 MAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSATKFIAGHS---DVMAGVLAVKG   54 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~--~~~pl~~GADivv~S~tK~l~G~~---d~~~G~v~~~~   54 (223)
                      +||++|+.++||.+...+.  ..+|-++|||+++-|.||+|+|+-   ---.|.+.++.
T Consensus       691 iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~  749 (993)
T PLN02414        691 IIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK  749 (993)
T ss_pred             HHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEch
Confidence            4799999999999975443  467889999999999999887541   12257776654

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=97.28  E-value=0.012  Score=53.26  Aligned_cols=169  Identities=18%  Similarity=0.199  Sum_probs=94.6

Q ss_pred             cCCEEEEecCCCCCCCcCcccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHHH-----------HHH--hcCC
Q 027424            5 HGALLLVDNSIMSPVLSRPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----------LQN--AEGS   70 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~~pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~-----------~~~--~~g~   70 (223)
                      +|++++||.+-+.+.  .|++. ..|+++-|.+|.++-+|   .|++..+++.+ +++..           ...  ..| 
T Consensus       165 ~g~l~vVDavss~g~--~~idv~~~d~~~~ssqK~lgP~G---lg~l~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~~-  237 (360)
T PRK05355        165 GDVPLVADMSSDILS--RPIDVSKFGLIYAGAQKNIGPAG---LTIVIVREDLL-GRALPSIPSMLDYKTHADNDSMYN-  237 (360)
T ss_pred             CCCcEEEEcCccccC--ccCCHHHccEEEEeccccccCCc---eEEEEECHHHH-hhcccCCChHHHHHHHHhcCCccC-
Confidence            689999999854332  33332 24699999999996433   45666665432 22211           011  112 


Q ss_pred             CCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           71 GLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        71 ~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      +.+-...|.+..+|+.+      ..+.+++.+.+..+.++|++.+.     |.-+. .+.+        ..+.+++|.+.
T Consensus       238 Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~-----~~~~~-~~~~--------rs~~v~sf~~~  303 (360)
T PRK05355        238 TPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDF-----YRNPV-APED--------RSRMNVPFTLA  303 (360)
T ss_pred             CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC-----cccCC-Chhh--------cCCcEEEEEcC
Confidence            22334455666666654      45668888889999999999872     21111 1110        14578999985


Q ss_pred             CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 027424          145 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE----DVNDLISDLDKALR  219 (223)
Q Consensus       145 ~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE----d~~dL~~dl~~Al~  219 (223)
                      +.....+|++.+.  ..    |    +++.+   .|.            ..+.+|+|++..    |++.|++-|++.++
T Consensus       304 ~~~~~~~~~~~~~--~~----G----i~~~~---~~~------------~~g~vRiS~~~~nt~eei~~l~~~l~~~~~  357 (360)
T PRK05355        304 DEELDKKFLAEAK--AA----G----LVGLK---GHR------------SVGGMRASIYNAMPLEGVQALVDFMKEFER  357 (360)
T ss_pred             ChHHHHHHHHHHH--HC----C----CcccC---CCC------------ccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            4433344544331  11    1    11111   110            236899999855    66667776666654

>PRK05965 hypothetical protein; Provisional

Probab=97.27  E-value=0.0058  Score=57.14  Aligned_cols=121  Identities=16%  Similarity=0.169  Sum_probs=65.2

Q ss_pred             CccccCCEEEEecCCCC------CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-----HhcC
Q 027424            1 MAHAHGALLLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-----NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-----~~~g   69 (223)
                      +|++||+++|+|+....      .+.+.-...-.||++-  .|.++|.-.-+++ ++.+ +++.+.+..-.     -..+
T Consensus       244 lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~a-v~~~-~~i~~~~~~~~~~~~~~~h~  319 (459)
T PRK05965        244 ACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTV--AKGLTSGYVPMGA-VLMS-DHVYQGIADGAGAAAPVGHG  319 (459)
T ss_pred             HHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEe--chhhccCCcceeE-EEEc-HHHHHHHhcccccccccccc
Confidence            58999999999998521      1222222223699886  7999863123555 4454 45554442100     0122


Q ss_pred             CC--CChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHh---cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           70 SG--LAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLA---SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        70 ~~--~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~---~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      .+  -+|..|...+..|+.+...  +++..+....+.+-|+   ++|.|..|                  +|.|.|+.|+
T Consensus       320 ~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v------------------rG~Gl~~gie  381 (459)
T PRK05965        320 YTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDV------------------RGRGLLGALE  381 (459)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEEE------------------eecceEEEEE
Confidence            12  3677777666666665321  1222333333333332   24444333                  4789999999


Q ss_pred             e
Q 027424          143 T  143 (223)
Q Consensus       143 ~  143 (223)
                      +
T Consensus       382 ~  382 (459)
T PRK05965        382 L  382 (459)
T ss_pred             E
Confidence            8

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=97.27  E-value=0.0033  Score=58.46  Aligned_cols=116  Identities=18%  Similarity=0.193  Sum_probs=63.8

Q ss_pred             CccccCCEEEEecCCCCCCCc-----CcccCC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl~~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--   71 (223)
                      +|+++|+++|+|+.+.. +..     ..-.+|  .|+++  +.|.++| + .-.|+++++. ++...+.   ...+.+  
T Consensus       250 l~~~~g~lli~DEv~tG-~gr~G~~~a~~~~gv~pDivt--~~K~l~~-G-~p~gav~~~~-~i~~~~~---~~~~~T~~  320 (441)
T PRK05769        250 LADKYGILLIDDEVQTG-MGRTGKMFAIEHFGVEPDIIT--LAKAIAG-G-LPLGAVIGRA-ELMFLPP---GSHANTFG  320 (441)
T ss_pred             HHHHcCCEEEEechhhC-CCcccceehhhccCCCCCEEE--EcccccC-C-cccEEEEEeh-hhhhcCC---CCCCCCCC
Confidence            47899999999999642 211     011123  58886  6799986 3 3345565543 4432211   112222  


Q ss_pred             CChHhHHHHHhcHHHHHH-HHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           72 LAPFDCWICLRGVKTMAL-RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~-R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      -+|..+...+..|+.+.. .+++..+....+.+.|+    ++|.+..                  .+|.|.|+.+++
T Consensus       321 g~p~~~aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~------------------vrg~G~~~~i~~  379 (441)
T PRK05769        321 GNPVAAAAALATLEELEEGLLENAQKLGEYLRKELKELKEKYEFIGD------------------VRGLGLMIGVEL  379 (441)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee------------------eecceEEEEEEe
Confidence            267677666677776643 12333333344444333    2443333                  246899999998

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.27  E-value=0.0045  Score=62.82  Aligned_cols=52  Identities=40%  Similarity=0.611  Sum_probs=42.4

Q ss_pred             CccccCCEEEEecCC-CCCCCcCcccCCCcEEEeccccc-----ccCCcccceeEEEecCh
Q 027424            1 MAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKGE   55 (223)
Q Consensus         1 ia~~~g~~lvVDnT~-~s~~~~~pl~~GADivv~S~tK~-----l~G~~d~~~G~v~~~~~   55 (223)
                      +||++|++++||... +-.....|=++||||++-|++|+     ++|++   +|.+.++++
T Consensus       230 ~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP~---aGflavr~~  287 (954)
T PRK05367        230 AAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGPH---AAYFAVRDA  287 (954)
T ss_pred             HHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCCC---EEEEEECHH
Confidence            479999999999865 33445678899999999999999     88885   788887753

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=97.27  E-value=0.0038  Score=59.15  Aligned_cols=122  Identities=18%  Similarity=0.234  Sum_probs=66.4

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-----hcC
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-----AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-----~~g   69 (223)
                      +|+++|+++|+|+...+.      +.+.-...-.||+  .+.|.++|.---+++ ++++ +++.+.+.....     ..+
T Consensus       289 lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~lggG~~PigA-v~~~-~~i~d~~~~~~~~~~~~~h~  364 (504)
T PLN02760        289 VLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLV--SLAKALSSAYMPIGA-VLVS-PEISDVIHSQSNKLGSFAHG  364 (504)
T ss_pred             HHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEE--EecccccCCccccce-Eeec-HHHHhhhhcccccccCcccC
Confidence            589999999999986211      1111111226865  468999863223555 5454 456554432100     112


Q ss_pred             CC--CChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHhc---CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           70 SG--LAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        70 ~~--~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~~---~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      .+  -+|..|...+..|+-+...  +++..+....+.+.|+.   +|.|..                  .+|.|.|+.++
T Consensus       365 ~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~------------------vrG~Gl~~gie  426 (504)
T PLN02760        365 FTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGE------------------IRGTGLILGTE  426 (504)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCeee------------------EEeCceEEEEE
Confidence            12  3687777777777766432  23334444444443432   333322                  35789999999


Q ss_pred             eC
Q 027424          143 TG  144 (223)
Q Consensus       143 ~~  144 (223)
                      +.
T Consensus       427 ~~  428 (504)
T PLN02760        427 FV  428 (504)
T ss_pred             Ee
Confidence            83

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=97.26  E-value=0.0072  Score=54.49  Aligned_cols=119  Identities=20%  Similarity=0.232  Sum_probs=65.1

Q ss_pred             CccccCCEEEEecCCCCCCCcC--cc---cCC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR--PL---ELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~--pl---~~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++++|+++. ++...  +.   ..|  .|++  |++|.+++ +-.+ |+++.+ +++.+.+...........+
T Consensus       194 l~~~~~~~~i~De~~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G~~i-g~~~~~-~~~~~~~~~~~~~~t~~~~  267 (375)
T PRK04260        194 YCQETGILLIVDEVQT-GMGRTGKLYAFEHYGIEPDIF--TLAKGLAN-GVPV-GAMLAK-SSLGGAFGYGSHGSTFGGN  267 (375)
T ss_pred             HHHHcCCEEEEechhh-CCCcccchhhhHhhCCCCCEE--EecccccC-Ccce-EEEEEc-HHHHhhcCCCCCCCCCCcC
Confidence            4788999999999973 33211  11   122  4654  89999984 3445 445554 4554444221111111236


Q ss_pred             hHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHH----hcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           74 PFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFL----ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        74 p~da~ll~~~l~tl~--~R~~~~~~na~~la~~L----~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      |..+......|+.+.  ...++..++...+.+.|    ..+|.+..|                  ++.|.++.+++
T Consensus       268 ~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~  325 (375)
T PRK04260        268 KLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTV------------------RGLGYMIGIET  325 (375)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE------------------eccceEEEEEe
Confidence            777777777776653  22344444455544444    344433222                  23577888887

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=97.25  E-value=0.0083  Score=54.87  Aligned_cols=107  Identities=20%  Similarity=0.201  Sum_probs=71.9

Q ss_pred             CccccCCEEEEecCCC-CCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHH-----------HHHHHHHhc
Q 027424            1 MAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-----------ELYFLQNAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~-s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~-----------~l~~~~~~~   68 (223)
                      +|++||+.+|||..-+ .....++-++|.|+++.+.-|.++++-  =.|.+..+++.+..           .|..+..++
T Consensus       156 ~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PP--Gla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~  233 (383)
T COG0075         156 AAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPP--GLAFVAVSERALEAIEERKHPSFYLDLKKWLKYM  233 (383)
T ss_pred             HHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCC--ccceeEECHHHHHHHhcCCCCceeecHHHHHHHH
Confidence            4788999999998743 344567778999999999999999774  23456555543210           122222221


Q ss_pred             ---C--CCCCh-HhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCC
Q 027424           69 ---G--SGLAP-FDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        69 ---g--~~~sp-~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p  109 (223)
                         +  ..+.| ..-|-+..+|+.     ++.|++||.+++.++.+.++.-.
T Consensus       234 ~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alG  285 (383)
T COG0075         234 EKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALG  285 (383)
T ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence               2  12344 344455556665     47899999999999999999654

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=97.25  E-value=0.0074  Score=55.11  Aligned_cols=193  Identities=21%  Similarity=0.209  Sum_probs=103.0

Q ss_pred             CccccCCEEEEecCCCC-CCCcCcccCCCcEEEecccccccCCcccceeEEEecCh-hHHHHHHH--H-H-HhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKELYF--L-Q-NAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~-~~~~~l~~--~-~-~~~g~~~sp   74 (223)
                      +|+++|+++-||.+=+- -+..++-++|+|+..-|.||..+--+  + |++..++. .+...+.-  + + ...| +..-
T Consensus       166 i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkG--i-GaLyv~~~~~~~p~i~GGgQE~g~RsG-Tenv  241 (386)
T COG1104         166 ICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKG--I-GALYVRPGVRLEPLIHGGGQERGLRSG-TENV  241 (386)
T ss_pred             HHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCc--e-EEEEECCCCccCceeccCcCCCCCCCC-CccH
Confidence            47899999999999544 34456666789999999999987544  3 44555542 11111100  0 0 0011 1111


Q ss_pred             HhHHH----HHhcHHHHHHHHHHHHhHHHHHHHHHhcC-CCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHH
Q 027424           75 FDCWI----CLRGVKTMALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  149 (223)
Q Consensus        75 ~da~l----l~~~l~tl~~R~~~~~~na~~la~~L~~~-p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~  149 (223)
                      -...-    +.-..+.+..+.++...--.++.+.|++. |.| .++ . -   +        .....+.+.|.+.+.+ .
T Consensus       242 ~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~-~~~-g-~---~--------~~rlP~~~~~~f~gv~-g  306 (386)
T COG1104         242 PGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDV-YLN-G-D---D--------EPRLPNILNFSFPGVE-G  306 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcE-EEc-C-C---c--------ccCCCCeEEEEeCCCc-H
Confidence            00111    11122233344444444445555666655 543 222 1 1   1        1124567777774432 4


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCC----CeEEEEecCCC----HHHHHHHHHHHHhc
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE----DLVRISVGIED----VNDLISDLDKALRT  220 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~----~liRlsvGlEd----~~dL~~dl~~Al~~  220 (223)
                      +.++-.|+.-.+++|-|..-|--.        -.+......+|+++    +.||||.|-..    ++..++-|.+++++
T Consensus       307 E~ll~~L~~~gI~vStGSACsS~~--------~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~  377 (386)
T COG1104         307 ESLLLALDLAGIAVSTGSACSSGS--------LEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKR  377 (386)
T ss_pred             HHHHHhccccCeEEeccccccCCC--------CCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            455667777777889886433210        01223456777753    78999999664    45555555555543

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=97.25  E-value=0.003  Score=63.69  Aligned_cols=154  Identities=21%  Similarity=0.210  Sum_probs=90.4

Q ss_pred             CccccCCEEEEecCCCC--CCCcCcccCCCcEEEecccccccCC---cccceeEEEecChhHHHHHH-----HH------
Q 027424            1 MAHAHGALLLVDNSIMS--PVLSRPLELGADIVMHSATKFIAGH---SDVMAGVLAVKGERLAKELY-----FL------   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s--~~~~~pl~~GADivv~S~tK~l~G~---~d~~~G~v~~~~~~~~~~l~-----~~------   64 (223)
                      +||++|..++||.+...  ....+|-++|||+++-|.||+|+++   |---.|.+.++. .+...+-     ..      
T Consensus       653 iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~-~L~~~lPg~~v~~t~d~~gr  731 (939)
T TIGR00461       653 IVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKS-HLIPFLPKHDVVSMITGIGG  731 (939)
T ss_pred             HHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhh-hchhhcCCCcccccccCCCC
Confidence            47999999999999633  2346788899999999999987733   112357777764 2221110     00      


Q ss_pred             HHhcCCCCC-hHh---------HHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCC--------------
Q 027424           65 QNAEGSGLA-PFD---------CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP--------------  120 (223)
Q Consensus        65 ~~~~g~~~s-p~d---------a~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~--------------  120 (223)
                      ....|...+ ++.         .|+.+.|-+-+..-.+....||..+++.|++++   .+.||+-.              
T Consensus       732 eq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~~---~~l~~~~~~~~~hEfv~~~~~~  808 (939)
T TIGR00461       732 SKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDHY---PILFVGTLKHVAHECILDLRPL  808 (939)
T ss_pred             ccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhccC---cccccCCCCceeEEEEEeccch
Confidence            001122222 221         233333444455556778889999999998865   45565411              


Q ss_pred             ----CCcchHHHHhhhC-CC-Ce--------eEEEEe---CCHHHHHHHHhhcCc
Q 027424          121 ----EHPGHELHYSQAK-GA-GS--------VLSFLT---GSLALSKHVVETTKY  158 (223)
Q Consensus       121 ----~~~~~~~~~~~~~-g~-gg--------l~sf~~---~~~~~~~~f~~~l~l  158 (223)
                          +-+.-+++++.+. |+ ++        -+.++.   .+++..++|++.+.-
T Consensus       809 ~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~  863 (939)
T TIGR00461       809 KAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIA  863 (939)
T ss_pred             hhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHH
Confidence                1123456666542 21 21        233432   467888999888744

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=97.24  E-value=0.017  Score=53.97  Aligned_cols=113  Identities=19%  Similarity=0.224  Sum_probs=68.6

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc-C---CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE-L---GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~-~---GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++++++|=|+.++--..    ..|+. +   |==|.+.|++|++. ++..+|+++ + ++++.+++...........
T Consensus       255 lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~-PglRlG~vv-~-p~~~~~~~~~~k~~~~~~~  331 (459)
T COG1167         255 LAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLA-PGLRLGYVV-A-PPELIEKLLRLKQAADLGP  331 (459)
T ss_pred             HHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcc-cccceeeee-C-CHHHHHHHHHHHHHhcCCC
Confidence            47899999999999754221    11222 1   22388999999997 677776644 4 5567676666555444444


Q ss_pred             ChHh-----HHHHHhc-HHHHHHHHHHHHhHH-HHHHHHHhcCC-CeeEEEcC
Q 027424           73 APFD-----CWICLRG-VKTMALRVEKQQDNA-QKIAEFLASHP-RVKKVNYA  117 (223)
Q Consensus        73 sp~d-----a~ll~~~-l~tl~~R~~~~~~na-~~la~~L~~~p-~v~~V~yP  117 (223)
                      +...     .++. .| .+....|+++..+.- ..+.+.|+++. ....+..|
T Consensus       332 s~~~Q~~la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p  383 (459)
T COG1167         332 SSLSQAALAAFLL-SGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRP  383 (459)
T ss_pred             ChHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecC
Confidence            5543     2222 32 455556665554444 45677888874 35566666

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=97.21  E-value=3.8e-05  Score=67.73  Aligned_cols=111  Identities=22%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             CccccCCEEEEecCC------CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC-
Q 027424            1 MAHAHGALLLVDNSI------MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA-   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~------~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s-   73 (223)
                      +||++|++|.+|-+=      ......+-+..++|+|.-|+||.++..   +|++|+.+ +++.++-+.++...|..+. 
T Consensus       153 ~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~---~Gavl~~~-~~~i~~~~~~~k~~gg~~~~  228 (290)
T PF01212_consen  153 LAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAP---GGAVLAGN-KEFIAKARRQRKRLGGGMRQ  228 (290)
T ss_dssp             HHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SS---SEEEEEES-HHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccc---cceEEEec-hHHHHHHHHHHHHhccCeee
Confidence            489999999999882      111112233468999999999999865   35666555 4544433334444443221 


Q ss_pred             --hHhH---H--HHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           74 --PFDC---W--ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        74 --p~da---~--ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                        ..-+   |  ..++.++....++.+.+++|++|++-|+..+.+  +.+|
T Consensus       229 ~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~~~--~~~~  277 (290)
T PF01212_consen  229 AGVLAAAELYQFAALRALELWLERARHANAMAKRLAAGLEALGGV--LPRP  277 (290)
T ss_dssp             TTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEECEE--EETT
T ss_pred             cceeeeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCCc--ccCC
Confidence              1111   1  223334445678899999999999999998864  5555

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=97.19  E-value=0.0048  Score=57.38  Aligned_cols=117  Identities=16%  Similarity=0.243  Sum_probs=66.3

Q ss_pred             CccccCCEEEEecCCCC----C--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC--CC
Q 027424            1 MAHAHGALLLVDNSIMS----P--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--GL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~--~~   72 (223)
                      +|+++|+++|+|+....    +  +.+.-...-.||++  +.|.++| +--+++++ .+++ + +.+..  ...+.  .-
T Consensus       235 lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~-G~Pigav~-~~~~-~-~~~~~--~~~~~T~~g  306 (442)
T TIGR00709       235 VTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG-GLPLAVLL-IAPE-F-DAWQP--AGHTGTFRG  306 (442)
T ss_pred             HHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC-CcccEEEE-EchH-H-hccCC--CcCCCCCCc
Confidence            58999999999999532    1  11111122368988  7999998 65565544 5543 3 22211  11122  23


Q ss_pred             ChHhHHHHHhcHHHHHH-H-HHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           73 APFDCWICLRGVKTMAL-R-VEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~-R-~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      +|..+...+..|+.+.. . .++..+....+.+.|+    +||.|..|                  +|.|.|+++++
T Consensus       307 npla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v------------------rG~Gl~~~ie~  365 (442)
T TIGR00709       307 NQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNV------------------RGRGLMQGIMI  365 (442)
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeeee------------------eccceEEEEEE
Confidence            67777777777776532 1 1222333333333333    45555444                  46899999998

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=97.19  E-value=0.0046  Score=57.97  Aligned_cols=124  Identities=21%  Similarity=0.236  Sum_probs=81.4

Q ss_pred             CccccCCEEEEecCCCCCCC--cCc-cc----C-CCcEEEecccccccCCcccceeEEEecChh-HHHHHHHHHHhcCC-
Q 027424            1 MAHAHGALLLVDNSIMSPVL--SRP-LE----L-GADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFLQNAEGS-   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~--~~p-l~----~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~-~~~~l~~~~~~~g~-   70 (223)
                      ||+++|+++-||.++|..+.  .++ ..    + +||=|+-|.|||+-  .=.-+|++..++++ +.+.+.....+.+. 
T Consensus       232 ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~--aP~~~G~il~rd~e~l~~~~~~~~~yl~~~  309 (460)
T COG0076         232 IAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGL--APIGCGVVLFRDEEALRRILIFADYYLPGG  309 (460)
T ss_pred             HHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccC--CCCCceEEEEECHHHhhhhhhcccccCCCC
Confidence            57899999999999987542  111 11    1 89999999999966  33457777788873 43333221111110 


Q ss_pred             ----------CC--ChHhHHHHHhcH--HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCC
Q 027424           71 ----------GL--APFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  136 (223)
Q Consensus        71 ----------~~--sp~da~ll~~~l--~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g  136 (223)
                                -+  ...-.|..++.+  +-+..-+++..++|+++++.|++.+..+-|.-|                 -.
T Consensus       310 ~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p-----------------~l  372 (460)
T COG0076         310 GIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP-----------------EL  372 (460)
T ss_pred             CcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC-----------------cc
Confidence                      01  113345444433  456677788999999999999999866666656                 45


Q ss_pred             eeEEEEe
Q 027424          137 SVLSFLT  143 (223)
Q Consensus       137 gl~sf~~  143 (223)
                      ++++|..
T Consensus       373 ~~V~fr~  379 (460)
T COG0076         373 PIVAFRL  379 (460)
T ss_pred             ceEEEEc
Confidence            7888887

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.18  E-value=0.0045  Score=56.46  Aligned_cols=106  Identities=25%  Similarity=0.253  Sum_probs=79.8

Q ss_pred             CccccCCEEEEecCC--CCCCCcCcccCCCcEEEecc--cccccCCcccceeEEEecChhHHHHHHHHHHhcCCC-----
Q 027424            1 MAHAHGALLLVDNSI--MSPVLSRPLELGADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG-----   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~--~s~~~~~pl~~GADivv~S~--tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~-----   71 (223)
                      +|++||++||-|.+.  |+-+--+..=--.|+.+-|.  +|-+.-  - -||+|++|+++++++++.++. .|..     
T Consensus       144 la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~itt--g-EGGav~tnd~ela~k~~~lr~-hG~~~~~~~  219 (374)
T COG0399         144 LAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTT--G-EGGAVVTNDEELAEKARSLRN-HGLSRDAVF  219 (374)
T ss_pred             HHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCccc--c-CceEEEeCCHHHHHHHHHHHH-hCcCCCccc
Confidence            589999999999995  44443333222258888886  576762  2 599999999999888776542 2221     


Q ss_pred             ------------CChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCC
Q 027424           72 ------------LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        72 ------------~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~  110 (223)
                                  |+-..|.+.+.-|+.+...+++..+++....+.|+..|.
T Consensus       220 ~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~  270 (374)
T COG0399         220 KYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPG  270 (374)
T ss_pred             cceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence                        345677788888999999999999999999999999886

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=97.15  E-value=0.001  Score=59.71  Aligned_cols=118  Identities=21%  Similarity=0.315  Sum_probs=66.3

Q ss_pred             CccccCCEEEEecCCCC------CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--C
Q 027424            1 MAHAHGALLLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--L   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--~   72 (223)
                      +|+++|+++|+|++...      .+.+.-...-+||++-|  |.++|. --+ |+++.+ +++.+.+...  ..+.+  -
T Consensus       206 lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG-~p~-sav~~~-~~i~~~~~~~--~~~~T~~g  278 (339)
T PF00202_consen  206 LCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGG-LPI-SAVLGS-EEIMEAFQPG--SHGSTFGG  278 (339)
T ss_dssp             HHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTT-SSE-EEEEEE-HHHHTTSCTT--SSTCTTTT
T ss_pred             cccccccceecccccccccccCCccceecccccCcccccc--cchhhh-hhc-cccccc-chhhcccccc--cccccccc
Confidence            48999999999999632      22223333457999987  999985 444 445454 3454432111  12222  3


Q ss_pred             ChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHH---HHhc-CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           73 APFDCWICLRGVKTMALR--VEKQQDNAQKIAE---FLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R--~~~~~~na~~la~---~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      .|..+......|+.+...  .++..+....+.+   .|++ +|.|.+|.                  |.|-|+++++
T Consensus       279 ~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i~~vr------------------g~Gl~~~ie~  337 (339)
T PF00202_consen  279 NPLSCAAALATLEILEEEDLLERVRELGERLREGLRELAARYPLIGEVR------------------GIGLMIGIEL  337 (339)
T ss_dssp             -HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTEEEEE------------------EETTEEEEEE
T ss_pred             chHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe------------------eeCeEEEEEE
Confidence            577777776777665432  2222233333333   3333 47776655                  6788999887

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK06105 aminotransferase; Provisional

Probab=97.12  E-value=0.011  Score=55.40  Aligned_cols=121  Identities=17%  Similarity=0.258  Sum_probs=66.9

Q ss_pred             CccccCCEEEEecCCCC----C--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-----hcC
Q 027424            1 MAHAHGALLLVDNSIMS----P--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-----AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-----~~g   69 (223)
                      +|+++|+++|+|+...+    +  +.+.-...-.||+  .+.|.++|.-.- .|+++.+ +++.+.+.....     ..+
T Consensus       247 lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~--~~gK~lggG~~P-~~av~~~-~~i~~~~~~~~~~~~~~~h~  322 (460)
T PRK06105        247 VLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDIL--VMSKQLSSSYQP-LSAVLMN-EKVYDPIADESGKIGTFGHG  322 (460)
T ss_pred             HHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCee--eeecccccCccc-ceEEEEc-HHHHHHHhcccccCcccccC
Confidence            48999999999998621    1  1112112225877  568999863122 4445554 456554432100     011


Q ss_pred             --CCCChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHh---cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           70 --SGLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLA---SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        70 --~~~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~---~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                        ..-+|..+...+..|+.+...  +++..+....+.+.|+   +||.|..|                  +|.|.|+.|+
T Consensus       323 ~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l~~~~~v~~v------------------rG~Gl~~gie  384 (460)
T PRK06105        323 FTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEV------------------RGVGLIAAVE  384 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEE------------------EecceEEEEE
Confidence              124777777777777776532  2333344444444333   34444333                  4789999999


Q ss_pred             e
Q 027424          143 T  143 (223)
Q Consensus       143 ~  143 (223)
                      +
T Consensus       385 ~  385 (460)
T PRK06105        385 L  385 (460)
T ss_pred             E
Confidence            8

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=97.12  E-value=0.0059  Score=57.12  Aligned_cols=118  Identities=16%  Similarity=0.152  Sum_probs=65.8

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+... ++.       +.-...-.||++  +.|.++| +--+ |+++++ +++.+ ...-........+
T Consensus       251 lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDiv~--~gK~l~g-G~pi-~av~~~-~~i~~-~~~~~~~~T~~g~  323 (457)
T PRK05639        251 LLDEHGILLVMDEVQT-GIGRTGKWFASEWFEVKPDLII--FGKGVAS-GMGL-SGVIGR-KELMD-LTSGSALLTPAAN  323 (457)
T ss_pred             HHHHcCCEEEEechhh-ccCcCchHHHHHhcCCCCCEEE--echhhcC-CCcc-eeEEeh-HHHHh-hcCCCcccCCCcC
Confidence            4889999999999964 221       111122369998  8999986 3334 445454 44544 1110001112346


Q ss_pred             hHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           74 PFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        74 p~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      |..+...+..|+.+...  +++..+....+.+.|+    ++|.+..|                  +|.|.|+.+++
T Consensus       324 p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~V------------------rG~Gl~~gve~  381 (457)
T PRK05639        324 PVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDV------------------RGKGLMIGVEI  381 (457)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEee------------------ccceeEEEEEE
Confidence            77666666666665321  2333334444444443    35544443                  47899999988

>PRK06541 hypothetical protein; Provisional

Probab=97.10  E-value=0.01  Score=55.49  Aligned_cols=121  Identities=17%  Similarity=0.225  Sum_probs=67.1

Q ss_pred             CccccCCEEEEecCCCC-C-----CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC--C
Q 027424            1 MAHAHGALLLVDNSIMS-P-----VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG--S   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-~-----~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g--~   70 (223)
                      +|+++|+++|+|+...+ +     +.+.-...-.||++  +.|.++|.-.-+|+ ++.+ +++.+.+.....  ..+  .
T Consensus       250 lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~~G~~piga-v~~~-~~i~~~~~~~~~~~~~~~T~  325 (460)
T PRK06541        250 ICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGITSGYSPLGA-MIAS-DRLFEPFLDGPTMFLHGYTF  325 (460)
T ss_pred             HHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--ecccccCCccceeE-EEEc-HHHHHHhhcCCCccccCCCC
Confidence            48999999999999621 1     11111112368886  89999852113555 4454 445444321111  111  1


Q ss_pred             CCChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHhcC---CCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           71 GLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLASH---PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        71 ~~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~~~---p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      ..+|..+...+..|+.+...  .++..+....+.+.|++.   |.|..                  .+|.|.|+.+++
T Consensus       326 ~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~------------------vrg~Gl~~~ie~  385 (460)
T PRK06541        326 GGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGD------------------VRGDGYFYGIEL  385 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEE------------------EEecceEEEEEE
Confidence            24677777777777765321  345555555555555542   32222                  346899999998

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.09  E-value=0.011  Score=55.14  Aligned_cols=170  Identities=15%  Similarity=0.225  Sum_probs=90.7

Q ss_pred             CccccCCEEEEecCCCC------CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH----HhcCC
Q 027424            1 MAHAHGALLLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----NAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~----~~~g~   70 (223)
                      +|++||+++|+|+....      .+.+.-...-.||++-  .|-++|.-.-+++ ++.++ ++.+.+..-.    ...+.
T Consensus       251 lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~--gKgl~gG~~Pi~a-v~~~~-ei~~~~~~~~~~~~~~~~~  326 (453)
T PRK06943        251 LCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCL--SKGISGGYLPLSL-VLSRD-AIFAAFYDDDVTRGFLHSH  326 (453)
T ss_pred             HHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEee--ehhhccCcccceE-EEEcH-HHHHhhcccCccCCccCCC
Confidence            58999999999998521      1112222223799986  7988862123554 54544 5554442100    01222


Q ss_pred             C--CChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHhc---CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           71 G--LAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        71 ~--~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~~---~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      +  -+|..|...+..|+.+..-  +++..+....+.+-|++   +|.|..                  .+|.|.|+.+++
T Consensus       327 T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~------------------vrG~Gl~~gvel  388 (453)
T PRK06943        327 SYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRH------------------LRQRGTIFAFDV  388 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEe------------------EeccccEEEEEE
Confidence            2  2677777777777766421  23333333444444432   343333                  357899999998


Q ss_pred             C-CH----HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHH
Q 027424          144 G-SL----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDL  214 (223)
Q Consensus       144 ~-~~----~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl  214 (223)
                      . +.    +...+|...+  +..+.-+        .|                  ..+.+||+    +--||.+.+++-|
T Consensus       389 ~~~~~~~~~~~~~i~~~~--~~~Gll~--------~~------------------~g~~l~~~Ppl~it~~eid~~~~~l  440 (453)
T PRK06943        389 ALDGDAARTFSRRFFEAA--LERELLL--------RP------------------IGTTVYLMPPYVLDDDEIAWLAERT  440 (453)
T ss_pred             ccCCCcchHHHHHHHHHH--HHCCcEE--------Ee------------------cCCEEEEeCCCcCCHHHHHHHHHHH
Confidence            3 22    1233444332  1111111        00                  11336665    6667888899999


Q ss_pred             HHHHhc
Q 027424          215 DKALRT  220 (223)
Q Consensus       215 ~~Al~~  220 (223)
                      +++|+.
T Consensus       441 ~~al~~  446 (453)
T PRK06943        441 RATLDA  446 (453)
T ss_pred             HHHHHH
Confidence            988874

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.07  E-value=0.0054  Score=61.75  Aligned_cols=42  Identities=29%  Similarity=0.508  Sum_probs=34.5

Q ss_pred             CccccCCEEEEecCCCC-CC-CcCcccCCCcEEEecccccccCC
Q 027424            1 MAHAHGALLLVDNSIMS-PV-LSRPLELGADIVMHSATKFIAGH   42 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-~~-~~~pl~~GADivv~S~tK~l~G~   42 (223)
                      +||++|++|+||.+..- .. ..+|-++|||+++-|++|+++++
T Consensus       666 iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P  709 (954)
T PRK12566        666 VVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIP  709 (954)
T ss_pred             HHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcC
Confidence            47999999999999642 33 35578999999999999999854

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=97.07  E-value=0.0033  Score=57.69  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=66.0

Q ss_pred             CccccCCEEEEecCCCCCCC------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-HhcC--CC
Q 027424            1 MAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEG--SG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~~~g--~~   71 (223)
                      +|+++|+++|+|+.+. ++.      +.-...-.|++  +++|.+++ +-.+ |+++++ +++.+.+.... ...+  ..
T Consensus       224 l~~~~~~llI~DEv~~-g~r~g~~~~~~~~~~~pDi~--t~sK~l~~-G~pi-g~v~~~-~~i~~~~~~~~~~~~~~T~~  297 (423)
T TIGR00713       224 LTEEYGSLLIFDEVMT-GFRVALGGAQEYFGVEPDLT--TLGKIIGG-GLPV-GAFGGR-REIMERLAPEGPVYQAGTLS  297 (423)
T ss_pred             HHHHhCCEEEEEcccc-ccccCcchhHHHhCCCcchh--hhhhhhcC-CCce-eeeeEH-HHHHHhhCcCCCeeeccCCC
Confidence            4789999999999973 321      11112235755  69999984 4444 556554 45655553210 0111  13


Q ss_pred             CChHhHHHHHhcHHHHHH--HHHHHHhHHHHH----HHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           72 LAPFDCWICLRGVKTMAL--RVEKQQDNAQKI----AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~--R~~~~~~na~~l----a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      .+|..+...+..|+.+..  ..++..+....+    .+.+++++.+..|.                  +.|+++.+++.
T Consensus       298 ~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~------------------~~g~~~~v~~~  358 (423)
T TIGR00713       298 GNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVN------------------RVGSMFSLFFT  358 (423)
T ss_pred             CCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------eeccEEEEEEe
Confidence            577777777777775532  233333333333    33445565443333                  46888888763

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=97.05  E-value=0.012  Score=53.99  Aligned_cols=166  Identities=18%  Similarity=0.230  Sum_probs=88.0

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--   71 (223)
                      +|+++|+++|+|+.... +       .+.-+..-.||++-  .|.++| +--+ |+++.+. ++.. +  .....+.+  
T Consensus       208 l~~~~~~llI~DEv~tG-~GRtG~~~a~~~~gv~PDi~t~--gK~lg~-G~p~-~av~~~~-~i~~-~--~~~~~~~T~~  278 (395)
T PRK03715        208 LTKQHGLLLIVDEVQTG-CGRTGTLFAYELSGIEPDIMTL--GKGIGG-GVPL-AALLAKA-EVAV-F--EAGDQGGTYN  278 (395)
T ss_pred             HHHHcCCEEEEeccccC-CCCCcchhhHhhcCCCCceeee--hhhhhC-Ccce-EEEEEcc-cccc-c--cCCCcCCCCC
Confidence            47899999999998642 2       11222234687655  599997 3334 4455554 4421 1  11112222  


Q ss_pred             CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH--H
Q 027424           72 LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--A  147 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~--~  147 (223)
                      -+|..+...+..|+.+..  ..++..+....+.+.|++...    .|| +.          ..+|.|.|+++++.++  .
T Consensus       279 g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~-i~----------~vrG~Glm~~i~l~~~~~~  343 (395)
T PRK03715        279 GNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSE----ERG-LE----------GERGEGLLRALLLGKDIGP  343 (395)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh----cCC-cC----------eEEcceeEEEEEecCchHH
Confidence            357777777777777642  234444444444444442110    111 11          1246899999999542  2


Q ss_pred             HHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          148 LSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       148 ~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      .+.+....+   .++-.             +                 +.+..|||+.-+    |+.+.+++.|+++|+.
T Consensus       344 ~~~~~~~~~~~~Gi~~~-------------~-----------------~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~  393 (395)
T PRK03715        344 QIVEKARDMQPDGLLLN-------------A-----------------PRPNLLRFMPALNVTTEEIDQMIAMLRSVLDK  393 (395)
T ss_pred             HHHHHHHhccCCCEEEe-------------e-----------------cCCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence            222222333   22210             0                 012458888775    4577777888887764

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=97.05  E-value=0.0086  Score=55.83  Aligned_cols=169  Identities=18%  Similarity=0.258  Sum_probs=90.5

Q ss_pred             CccccCCEEEEecCC------CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH-HHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSI------MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~------~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~-~~~~~g~~~s   73 (223)
                      +|++||+++|+|+-=      |.-|-+.-...=.|||+.  .|.++| +.=+++ |+.++ ++...... ....+|  =+
T Consensus       251 ~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~--aK~ig~-G~Pl~a-vv~r~-ei~~~~~g~~~~Tf~--GN  323 (447)
T COG0160         251 LCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTL--AKSLGG-GLPLSA-VVGRA-EIMDWPPGGHGGTFG--GN  323 (447)
T ss_pred             HHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEe--cccccC-CCceeE-EeccH-HhcccCCcccCCCCC--cC
Confidence            589999999999983      111222222223699985  599997 655555 54554 44331000 111122  26


Q ss_pred             hHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHh--------cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-C
Q 027424           74 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA--------SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-G  144 (223)
Q Consensus        74 p~da~ll~~~l~tl~~R~~~~~~na~~la~~L~--------~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~  144 (223)
                      |..|...+.-|+.++.-  ...+|+.++-++|.        +||.|..|                  +|-|-|+.+|+ .
T Consensus       324 pva~Aaa~AvL~vie~e--~L~~~a~~~G~~l~~~L~~l~~~~~~IgdV------------------RG~Glm~giE~v~  383 (447)
T COG0160         324 PVACAAALAVLDVIEEE--NLLERAAELGEYLRDRLEELQEKHPLIGDV------------------RGLGLMIGVELVK  383 (447)
T ss_pred             HHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHhhcCceecc------------------cccceEEEEEEec
Confidence            77666666666654332  44444444444443        45555444                  47889999997 2


Q ss_pred             C-------HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe----cCCCHHHHHHH
Q 027424          145 S-------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISD  213 (223)
Q Consensus       145 ~-------~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv----GlEd~~dL~~d  213 (223)
                      +       .+.+.++++.+.  ..+..+.                       ..|...+.|||.-    -=|+.+..++-
T Consensus       384 d~~t~~p~~~~~~~i~~~~~--~~Glil~-----------------------~~G~~~nviRi~PPL~is~e~~d~~l~i  438 (447)
T COG0160         384 DRDTKEPDAELAAKIVARAF--ERGLLLL-----------------------TCGPHGNVLRILPPLTISDEELDEGLDI  438 (447)
T ss_pred             CCCCCCCCHHHHHHHHHHHH--HcCCEEe-----------------------ccCCCCcEEEEeCCcccCHHHHHHHHHH
Confidence            2       144555554431  1111110                       1122344455543    23567788888


Q ss_pred             HHHHHhcC
Q 027424          214 LDKALRTG  221 (223)
Q Consensus       214 l~~Al~~~  221 (223)
                      |++||..+
T Consensus       439 l~~al~~~  446 (447)
T COG0160         439 LEEALKEA  446 (447)
T ss_pred             HHHHHHhh
Confidence            88888754

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=97.04  E-value=0.006  Score=57.15  Aligned_cols=115  Identities=18%  Similarity=0.181  Sum_probs=64.1

Q ss_pred             CccccCCEEEEecCCCC----C--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--C
Q 027424            1 MAHAHGALLLVDNSIMS----P--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--L   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--~   72 (223)
                      +|+++|+++|+|+....    +  +.+.-...-.||++-  .|-++| +--+++ ++.++ ++ +.+..  ...+.+  -
T Consensus       260 lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~--gKglgg-G~PlsA-v~~~~-~~-~~~~~--~~~~~T~~g  331 (464)
T PRK06938        260 ITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVL--SKAIGG-SLPLAV-VVYRE-WL-DTWQP--GAHAGTFRG  331 (464)
T ss_pred             HHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEe--eccccC-CCceEE-Eeehh-Hh-hccCC--CCCCCCCCc
Confidence            58999999999998421    1  112222223699886  799986 444555 54553 33 22210  112222  3


Q ss_pred             ChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHH--------hcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           73 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFL--------ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L--------~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      +|..+...+..|+.+...  +..+|+.++.++|        ++||.|..|                  +|.|.|+.+++
T Consensus       332 npla~Aaa~a~L~~l~~~--~l~~~~~~~G~~l~~~L~~l~~~~~~i~~V------------------rG~Glm~gie~  390 (464)
T PRK06938        332 NQMAMAAGSATLRYIKEH--RLAEHAAAMGERLREHLRQLQRDYPQLGDV------------------RGRGLMLGVEI  390 (464)
T ss_pred             CHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHhCCCeeee------------------eccceEEEEEe
Confidence            677777666677665321  2333333333333        235555444                  47899999998

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=97.01  E-value=0.021  Score=53.22  Aligned_cols=170  Identities=17%  Similarity=0.208  Sum_probs=89.6

Q ss_pred             CccccCCEEEEecCCCC------CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-------HHh
Q 027424            1 MAHAHGALLLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNA   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-------~~~   67 (223)
                      +|+++|+++|+|+....      ++.+.-...-.||+  .+.|.++|..--+++ ++.+ +++.+.+..-       ...
T Consensus       247 lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~--~~gK~l~gG~~Pi~a-v~~~-~~i~~~~~~~~~~~~~~~~~  322 (445)
T PRK09221        247 ICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDII--TFAKGLTNGAIPMGA-VIAS-DEIYDAFMQGPEYAIEFFHG  322 (445)
T ss_pred             HHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEE--EeccccccCccccee-eEEc-HHHHHhhccCcccccccccc
Confidence            48899999999998632      11111111124876  567998853223454 5444 4555443210       001


Q ss_pred             cCCCCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc---CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           68 EGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        68 ~g~~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~---~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      .....+|..+...+..|+.+..  .+++..+....+.+.|++   +|.|..                  .+|.|.|+.++
T Consensus       323 ~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~------------------vrg~Gl~~~v~  384 (445)
T PRK09221        323 YTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVID------------------IRNIGLVAGIE  384 (445)
T ss_pred             cCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEE------------------EecCceEEEEE
Confidence            1112477777777777777642  234444455555555543   233322                  24678888888


Q ss_pred             eCCH-----HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHH
Q 027424          143 TGSL-----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISD  213 (223)
Q Consensus       143 ~~~~-----~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~d  213 (223)
                      +...     ..+.++.+.+.  ..+.-+        .+                  ..+.+||+    +--|+++.+++-
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~--~~Gv~~--------~~------------------~~~~lr~~Ppl~~t~~eid~~~~~  436 (445)
T PRK09221        385 LAPRPGAPGARGYEAFMKCF--EKGLLV--------RY------------------TGDTIALSPPLIIEKAQIDELVDA  436 (445)
T ss_pred             EecccccccchHHHHHHHHH--HCCeEE--------ee------------------cCCEEEEECCccCCHHHHHHHHHH
Confidence            7321     11223332221  111000        00                  12457777    566788899999


Q ss_pred             HHHHHhc
Q 027424          214 LDKALRT  220 (223)
Q Consensus       214 l~~Al~~  220 (223)
                      |+++|+.
T Consensus       437 l~~~l~~  443 (445)
T PRK09221        437 LGDALRA  443 (445)
T ss_pred             HHHHHHh
Confidence            9998875

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=97.01  E-value=0.0029  Score=58.44  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=68.7

Q ss_pred             CccccCCEEEEecCCCCCCC------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-hc--CCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AE--GSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-~~--g~~   71 (223)
                      +|+++|+++|+|+.+. ++.      +.-+..-.|+  .+++|.+++ +--+| +++.+ +++.+.+..... ..  ..+
T Consensus       226 l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi--~~~gK~l~~-G~p~g-a~~~~-~~i~~~~~~~~~~~~~~T~~  299 (426)
T PRK00062        226 LCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDL--TTLGKIIGG-GLPVG-AFGGR-REIMEQLAPLGPVYQAGTLS  299 (426)
T ss_pred             HHHHcCCEEEEeechh-ccccCCccHHHHhCCCcch--HhhhhHhhC-CCcce-eeeEH-HHHHHhhccCCCceecccCc
Confidence            4789999999999963 221      1111112464  578899985 33344 45454 456555531111 11  123


Q ss_pred             CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           72 LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      .+|..+...+..|+.+..  ..++..++...+.+.|+    ++|.+..|                  +|.|.|+++++.
T Consensus       300 ~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v------------------rg~G~~~~i~l~  360 (426)
T PRK00062        300 GNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTV------------------NRVGSMFGLFFT  360 (426)
T ss_pred             CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEE------------------EEecceEEEEEe
Confidence            577777777777777643  34555555555555554    34543332                  357999999883

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=97.01  E-value=0.01  Score=52.60  Aligned_cols=59  Identities=25%  Similarity=0.453  Sum_probs=40.8

Q ss_pred             CccccCCEEEEecCCCCCCC---c---CcccCCC-cEEEeccccc-ccCCcccceeEEEecChhHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL---S---RPLELGA-DIVMHSATKF-IAGHSDVMAGVLAVKGERLAKELYFL   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~---~---~pl~~GA-Divv~S~tK~-l~G~~d~~~G~v~~~~~~~~~~l~~~   64 (223)
                      +|++||+||++||++|.|+.   +   .|+ ++- =|.|.|++|. +.|   .-.|.++.| +++...+..+
T Consensus       207 lA~~~giPliIDnAYg~PFP~iifsd~~~~-w~~NiilC~SLSK~GLPG---~R~GIiIan-e~viqaitnm  273 (417)
T COG3977         207 LARQHGIPLIIDNAYGVPFPGIIFSDATPL-WNENIILCMSLSKLGLPG---SRCGIIIAN-EKVIQAITNM  273 (417)
T ss_pred             HhhhcCCcEEEecccCCCCCceeccccccc-CCCCEEEEeehhhcCCCC---cceeEEEcc-HHHHHHHHhc
Confidence            58899999999999999874   1   222 343 3779999997 333   347877654 5666655543

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=97.01  E-value=0.012  Score=54.46  Aligned_cols=165  Identities=22%  Similarity=0.238  Sum_probs=85.3

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHH---HHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY---FLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~---~~~~~~g~   70 (223)
                      +|+++|+++|+|+... ++.       +.-+..-.||++  +.|.+.     ++|++. +. ++.+...   ......+.
T Consensus       247 lc~~~g~llI~DEV~t-G~GrtG~~~a~~~~gv~PDi~~--~gK~~~-----~~g~~~-~~-~i~~~~~~~~~~~~~~~~  316 (431)
T TIGR03251       247 LCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVQPDIVA--FGKKTQ-----VCGIMA-GR-RVDEVADNVFAVPSRLNS  316 (431)
T ss_pred             HHHHcCCEEEEecchh-ccCccchHHHHHhcCCCCCEEE--ecccCc-----cceEEe-cc-hHHHhhhhcccCccccCC
Confidence            4899999999999964 221       112223479987  567652     456553 33 2211111   00111122


Q ss_pred             --CCChHhHHHHHhcHHHHHH-H-HHHHHhHHHHHHHHHh----cCC-CeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           71 --GLAPFDCWICLRGVKTMAL-R-VEKQQDNAQKIAEFLA----SHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        71 --~~sp~da~ll~~~l~tl~~-R-~~~~~~na~~la~~L~----~~p-~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                        +-+|..+......|+.+.. . .++..+....+.+.|+    ++| .+..                  .+|.|.|+.+
T Consensus       317 T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~------------------vrg~G~~~~i  378 (431)
T TIGR03251       317 TWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSN------------------PRGRGLMCAF  378 (431)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceec------------------ccccceeEEE
Confidence              2467777777777776532 1 2333333344443333    344 2222                  2467999999


Q ss_pred             EeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          142 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       142 ~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      ++.+.+...++...+.  ..+.-+        .|.                 ....+||+..+--.++=++.+-++|++
T Consensus       379 ~~~~~~~~~~~~~~l~--~~Gvl~--------~~~-----------------g~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       379 DLPSTADRDEVIRQLY--REGVLL--------LGC-----------------GERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             EeCCHHHHHHHHHHHH--hCCeEE--------ecC-----------------CCCeEEEECCccCCHHHHHHHHHHHHh
Confidence            9965544555554432  111110        110                 124589888877666656666566543

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK06062 hypothetical protein; Provisional

Probab=96.99  E-value=0.005  Score=57.47  Aligned_cols=118  Identities=19%  Similarity=0.296  Sum_probs=64.7

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC--C
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--G   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~--~   71 (223)
                      +|+++|+++|+|+.... +.       +.-...-.||++  +.|.++|.-.-+++ ++.++ ++.+.+....-..+.  .
T Consensus       243 lc~~~g~lLI~DEV~tG-fGRtG~~~a~~~~gv~PDi~t--~gK~lggG~~Piga-v~~~~-~i~~~~~~~~~~~~~T~~  317 (451)
T PRK06062        243 LCDRHGIVLIADEVMAG-FGRTGKWFAIEHFGVVPDLIT--FAKGVNSGYVPLGG-VAISE-AIAATFADRPYPGGLTYS  317 (451)
T ss_pred             HHHHcCCEEEeeccccC-CCcCcHHHHHHhcCCCCCeee--echhhhcCCcCcEE-EEEcH-HHHHHhccCCCCCCCCCC
Confidence            48999999999999642 21       111222368775  68999962113555 44554 565544311001121  2


Q ss_pred             CChHhHHHHHhcHHHHHHHHHHHHhHHHHH---------HHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           72 LAPFDCWICLRGVKTMALRVEKQQDNAQKI---------AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~R~~~~~~na~~l---------a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      -+|..+...+..|+.+...  ...+++..+         .+..+.+|.|..|.                  |.|.|+.++
T Consensus       318 gnpl~~Aaa~a~L~~l~~~--~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vr------------------G~Gl~~gve  377 (451)
T PRK06062        318 GHPLACAAAVATINAMEEE--GIVENAARIGAEVLGPGLRELAERHPSVGEVR------------------GLGVFWALE  377 (451)
T ss_pred             CCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEe------------------ccccEEEEE
Confidence            3677777777777776321  122333222         22223455554444                  678899998


Q ss_pred             e
Q 027424          143 T  143 (223)
Q Consensus       143 ~  143 (223)
                      +
T Consensus       378 ~  378 (451)
T PRK06062        378 L  378 (451)
T ss_pred             E
Confidence            8

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=96.99  E-value=0.01  Score=52.53  Aligned_cols=132  Identities=18%  Similarity=0.276  Sum_probs=76.4

Q ss_pred             CccccCCEEEEecCCCCCCCcC-----cccC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--HhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR-----PLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~-----pl~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--~~~g   69 (223)
                      +|+++|++|+||+.++|+++-.     .=++    -+||+...+.|.++|-   .||...+ +..+..-++...  -.+.
T Consensus       218 La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga---~GGyttg-p~~li~llrqr~RpylFS  293 (417)
T KOG1359|consen  218 LAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGA---SGGYTTG-PKPLISLLRQRSRPYLFS  293 (417)
T ss_pred             HHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCC---CCCCccC-ChhHHHHHHhcCCceeec
Confidence            4789999999999999986411     1112    3689999999999976   4887754 545544333221  1344


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCC-eeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~-v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      .++.|.-.-.....++-+   ..-+.+...|.+.+.++.+.... |..-.      |              .+.++.+++
T Consensus       294 nslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aGftIsg~~------h--------------PI~pv~lGd  353 (417)
T KOG1359|consen  294 NSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTISGAS------H--------------PICPVMLGD  353 (417)
T ss_pred             CCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCceecCCC------C--------------Cccceeccc
Confidence            556663222222333322   12235556677777777776532 11111      2              234455677


Q ss_pred             HHHHHHHHhhc
Q 027424          146 LALSKHVVETT  156 (223)
Q Consensus       146 ~~~~~~f~~~l  156 (223)
                      .+.+.++-|.+
T Consensus       354 a~lA~~~ad~l  364 (417)
T KOG1359|consen  354 ARLASKMADEL  364 (417)
T ss_pred             HHHHHHHHHHH
Confidence            77777776553

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=96.98  E-value=0.007  Score=56.38  Aligned_cols=119  Identities=16%  Similarity=0.228  Sum_probs=66.9

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+... .+.       +.-...-.|++  ++.|.++| + .-.|+++++ +++.+.+...........+
T Consensus       236 lc~~~g~llI~DEv~t-g~GrtG~~~a~~~~gv~pDi~--t~gK~l~~-G-~p~gav~~~-~~i~~~~~~~~~~~T~~~~  309 (445)
T PRK08593        236 FCREHGILFAVDDIQQ-GLGRTGKWSSISHFNITPDLM--SFGKSLAG-G-MPMSAIVGR-KEIMESLEAPAHLFTTGAN  309 (445)
T ss_pred             HHHHcCCEEEEechhh-CCCcCchHHHHHhcCCCCCEe--eecccccC-C-cccEEEEEc-HHHHhhhccCCCCCCCCCC
Confidence            4789999999999963 221       11111225766  68999985 3 334556554 4565544311111222356


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      |..+...+..|+.+..  .+++..+....+.+.|+    ++|.|..|.                  |.|.|+.+++
T Consensus       310 pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr------------------G~Gl~~gi~l  367 (445)
T PRK08593        310 PVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVR------------------GYGLSIGIDI  367 (445)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEe------------------ccceEEEEEE
Confidence            7777666677766532  22344444444444443    466555544                  6788888887

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=96.93  E-value=0.0028  Score=55.35  Aligned_cols=110  Identities=21%  Similarity=0.220  Sum_probs=76.5

Q ss_pred             CccccCCEEEEecCCCCC-CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH---------HhcCC
Q 027424            1 MAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---------NAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~---------~~~g~   70 (223)
                      |||++|+|+++..++..+ ...+..+.|||.+|-|-||.+.  +..-.|++.. .+++.+.+....         .++|+
T Consensus       181 ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmA--As~PiGvl~~-~eE~ae~V~r~Sg~~~~~KEvellGC  257 (382)
T COG1103         181 ICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMA--ASAPIGVLAM-SEEWAEIVLRRSGRAFPKKEVELLGC  257 (382)
T ss_pred             HHHHcCCceEeecceeeccccccccccCCCEEEecCccchh--ccCCeeEEee-hhHHHHHHHhhcccccccceeeeecc
Confidence            589999999999998654 3356678899999999999987  3344687754 456655432211         24676


Q ss_pred             CCChHhHHHHHhcHHHHHHHH---HHHHhHHHHHHHHHhcCCCeeE
Q 027424           71 GLAPFDCWICLRGVKTMALRV---EKQQDNAQKIAEFLASHPRVKK  113 (223)
Q Consensus        71 ~~sp~da~ll~~~l~tl~~R~---~~~~~na~~la~~L~~~p~v~~  113 (223)
                      +.-..-..-+|.++.....|+   .+-.++|+.+++-|++..+|.+
T Consensus       258 T~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~elEkigg~~q  303 (382)
T COG1103         258 TVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVAELEKIGGVKQ  303 (382)
T ss_pred             cccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            543323556888888877665   5667888888888887665433

>PRK07482 hypothetical protein; Provisional

Probab=96.90  E-value=0.033  Score=52.13  Aligned_cols=121  Identities=17%  Similarity=0.189  Sum_probs=67.5

Q ss_pred             CccccCCEEEEecCCCC------CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-----HhcC
Q 027424            1 MAHAHGALLLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-----NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-----~~~g   69 (223)
                      +|+++|+++|+|+....      .+.+.-...-+||++  +.|-++|.---+++++ ++ +++.+.+....     -..+
T Consensus       249 lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~~Pi~av~-~~-~~i~~~~~~~~~~~~~~~h~  324 (461)
T PRK07482        249 VLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLIT--VAKGLTSAYAPLSGSI-VG-EKVWDVLEQGSDEHGAIGHG  324 (461)
T ss_pred             HHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEE--EccccccCccccceee-ec-HHHHHHHhcccccCCccccC
Confidence            58999999999998521      112222222369998  5899986312355544 44 45544433100     0122


Q ss_pred             C--CCChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHH----hcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           70 S--GLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFL----ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        70 ~--~~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L----~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      .  .-+|..|...+..|+-+...  .++..+....+.+.|    ++||.|..|.                  |.|.|+.+
T Consensus       325 ~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr------------------G~Glm~gi  386 (461)
T PRK07482        325 WTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVR------------------GVGMLAAV  386 (461)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe------------------eceeEEEE
Confidence            2  23677777777777765321  133333333333333    4566655544                  68999999


Q ss_pred             Ee
Q 027424          142 LT  143 (223)
Q Consensus       142 ~~  143 (223)
                      ++
T Consensus       387 el  388 (461)
T PRK07482        387 EF  388 (461)
T ss_pred             Ee
Confidence            98

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=96.89  E-value=0.01  Score=54.99  Aligned_cols=174  Identities=11%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             CccccCCEEEEecCCCCCCCcCc----c-cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP----L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p----l-~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|+... .+....    . .+|...-+.+++|.++| +--+ |+++++ +++.+.+...........+|.
T Consensus       227 l~~~~g~llI~DEv~t-G~gr~G~~~a~~~~gv~pDi~tlsK~l~~-G~pi-gav~~~-~~i~~~~~~~~~~~T~~~~pl  302 (425)
T PRK07495        227 LCDQHGILLIADEVQT-GFARTGKLFAMEHHEVAADLTTMAKGLAG-GFPL-AAVTGR-AEIMDAPGPGGLGGTYGGNPL  302 (425)
T ss_pred             HHHHcCCEEEEechhh-cCCcCCCceeecccCCCCCEEeehhhhcC-Cccc-eEEEEc-HHHHhccCCCCcCCCCCCCHH
Confidence            4789999999999963 332111    1 12433335788999985 4444 445454 455544322111111234777


Q ss_pred             hHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH---
Q 027424           76 DCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---  146 (223)
Q Consensus        76 da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~---  146 (223)
                      .+...+..++.+..  -.++..+....+.+.|+    .+|.|..|+                  |.|-|+.+++.+.   
T Consensus       303 ~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr------------------G~Gl~~~iel~~~~~~  364 (425)
T PRK07495        303 GIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIADIR------------------GPGFMNAVEFNDADSG  364 (425)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCeeeee------------------cCceEEEEEEecCCCC
Confidence            77766666666532  12333333333433333    345444443                  5688888988321   


Q ss_pred             ----HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHH
Q 027424          147 ----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDKAL  218 (223)
Q Consensus       147 ----~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~Al  218 (223)
                          +.+.++.+.+.  ..|.-+.        +               .|...+.|||.    |.-|+.+++++-|+++|
T Consensus       365 ~~~~~~~~~~~~~~~--~~Gvl~~--------~---------------~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l  419 (425)
T PRK07495        365 LPSAEFANRVRLKAL--EKGLILL--------T---------------CGVHGNVIRFLAPITIQDDVFAEALDILEASI  419 (425)
T ss_pred             CccHHHHHHHHHHHH--HCCeEEe--------e---------------cCCCCCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence                12233332211  1111000        0               01112456666    77788888999999998


Q ss_pred             hcC
Q 027424          219 RTG  221 (223)
Q Consensus       219 ~~~  221 (223)
                      +..
T Consensus       420 ~~~  422 (425)
T PRK07495        420 LEA  422 (425)
T ss_pred             HHH
Confidence            753

>PRK07036 hypothetical protein; Provisional

Probab=96.88  E-value=0.017  Score=54.20  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=66.1

Q ss_pred             CccccCCEEEEecCCCCC------CCcC-cccCCCcEEEecccccccCCcc-cceeEEEecChhHHHHHHHH---H--Hh
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSR-PLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL---Q--NA   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~-pl~~GADivv~S~tK~l~G~~d-~~~G~v~~~~~~~~~~l~~~---~--~~   67 (223)
                      +|+++|+++|+|+.....      +... -+..-.||++  +.|.++| +- -+++ ++.+ +++.+.+...   .  -.
T Consensus       249 lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt--~gK~l~g-G~~Pi~a-v~~~-~~i~~~~~~~~~~~~~~~  323 (466)
T PRK07036        249 ICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIIT--FAKGLTS-GYQPLGA-VIIS-ERLLDVISGPNAKGNVFT  323 (466)
T ss_pred             HHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEE--Ecccccc-CccccEE-EEEc-HHHHHHHhcccCcCcccc
Confidence            589999999999986211      1111 1122368875  4799986 32 3454 5454 4565544311   0  01


Q ss_pred             cCC--CCChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHh---cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEE
Q 027424           68 EGS--GLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLA---SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  140 (223)
Q Consensus        68 ~g~--~~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~---~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~s  140 (223)
                      .|.  .-+|..+...+..|+.+...  +++..+....+.+.|+   +||.|..|                  +|.|.|+.
T Consensus       324 ~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~v------------------rG~Gl~~~  385 (466)
T PRK07036        324 HGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDV------------------RGDHLMAC  385 (466)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCEEEE------------------EeeceEEE
Confidence            121  23677777777777776421  2333344444444443   34433333                  47899999


Q ss_pred             EEe
Q 027424          141 FLT  143 (223)
Q Consensus       141 f~~  143 (223)
                      +++
T Consensus       386 ve~  388 (466)
T PRK07036        386 VEC  388 (466)
T ss_pred             EEE
Confidence            998

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=96.84  E-value=0.025  Score=57.60  Aligned_cols=51  Identities=41%  Similarity=0.515  Sum_probs=38.0

Q ss_pred             CccccCCEEEE--ecCCCCCCCcCcccCCCcEEEecccccc-----cCCcccceeEEEecCh
Q 027424            1 MAHAHGALLLV--DNSIMSPVLSRPLELGADIVMHSATKFI-----AGHSDVMAGVLAVKGE   55 (223)
Q Consensus         1 ia~~~g~~lvV--DnT~~s~~~~~pl~~GADivv~S~tK~l-----~G~~d~~~G~v~~~~~   55 (223)
                      +||++|++++|  |..-..+ ...|=++||||++-|.+|+.     +|+.   +|.+.++++
T Consensus       258 ~ah~~GaL~iVaad~lal~~-l~~pge~GADi~vgsgqKwg~P~G~GGP~---aGflavr~~  315 (993)
T PLN02414        258 NAHANGVKVVMATDLLALTM-LKPPGEWGADIVVGSAQRFGVPMGYGGPH---AAFLATSQE  315 (993)
T ss_pred             HHHHcCCEEEEEECHHHhcC-CCCHhhccCcEEEECCCccccCCCCCCCC---eeEEEECHH
Confidence            47999999999  4332222 23577899999999999998     6664   688887753

>PRK06149 hypothetical protein; Provisional

Probab=96.81  E-value=0.014  Score=59.57  Aligned_cols=118  Identities=23%  Similarity=0.354  Sum_probs=66.9

Q ss_pred             CccccCCEEEEecCCCC----CCCcCccc-CC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh-cCCCC
Q 027424            1 MAHAHGALLLVDNSIMS----PVLSRPLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~~~~~pl~-~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~-~g~~~   72 (223)
                      +|+++|+++|+|+...+    +-.+...+ +|  .||+  .+.|.++|. --+ |++++++ ++.+.+...... .+...
T Consensus       773 lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~lg~G-~Pl-~av~~~~-~i~~~~~~~~~~~sT~~g  847 (972)
T PRK06149        773 AVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKGMGNG-HPL-GAVITRR-EIAEALEAEGYFFSSTGG  847 (972)
T ss_pred             HHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEE--EecccccCC-eee-EEEEEcH-HHHhhhccCCcccCCCCC
Confidence            47899999999998621    10011112 23  6888  668999863 334 5565554 565544310001 11235


Q ss_pred             ChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHh--------cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           73 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA--------SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~--------~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      +|..|...+..|+.+..  ++..+|+..+-++|+        +||.|..|                  +|.|-|+.+++
T Consensus       848 nP~~~aaala~L~~i~~--e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~v------------------rG~Gl~~gvel  906 (972)
T PRK06149        848 SPVSCRIGMAVLDVLRE--EKLQENARRVGDHLKARLEALADRHPLIGAV------------------HGMGLYLGVEL  906 (972)
T ss_pred             CHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------eecceEEEEEE
Confidence            78777777777776542  234455544444332        35544443                  47899999998

>PLN02368 alanine transaminase

Probab=96.81  E-value=0.026  Score=52.03  Aligned_cols=115  Identities=12%  Similarity=0.044  Sum_probs=65.3

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCc-c----cCC-------CcEEEecccccc-cCCcccceeEEEe-cChhHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRP-L----ELG-------ADIVMHSATKFI-AGHSDVMAGVLAV-KGERLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~p-l----~~G-------ADivv~S~tK~l-~G~~d~~~G~v~~-~~~~~~~~l   61 (223)
                      +|+++|++||+|+++.--.+     +.+ +    +++       -=|+++|+||.+ +-.|-.+|.++.. .++++.+++
T Consensus       238 ~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~  317 (407)
T PLN02368        238 FCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEI  317 (407)
T ss_pred             HHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHH
Confidence            37889999999999744221     111 1    111       128889999998 4467777765532 355666666


Q ss_pred             HHHHHhcCCCCChHhHHHHHhcHH----------HH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           62 YFLQNAEGSGLAPFDCWICLRGVK----------TM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        62 ~~~~~~~g~~~sp~da~ll~~~l~----------tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      ........ +.+...-+.+...++          .+    ....+...++...+.+.|++.|++ .+..|
T Consensus       318 ~~~~~~~~-~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~-~~~~P  385 (407)
T PLN02368        318 YKVASIAL-SPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNV-VCNFT  385 (407)
T ss_pred             HHHhcccC-CCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe-EeCCC
Confidence            55432222 233322233333332          11    122355566777888999998875 34445

>PRK06917 hypothetical protein; Provisional

Probab=96.80  E-value=0.042  Score=51.21  Aligned_cols=120  Identities=14%  Similarity=0.175  Sum_probs=66.1

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-H-hcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-N-AEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~-~~g~~   71 (223)
                      +|+++|+++|+|+... ++       .+.-+..-.||++  +.|.++| +-.-.|+++++ +++.+.+.... . ..+.+
T Consensus       229 lc~~~g~llI~DEv~t-GfGRtG~~~a~~~~gv~PDi~~--~gK~l~~-G~~Pi~a~~~~-~~i~~~~~~~~~~~~~~~T  303 (447)
T PRK06917        229 ICDHYDILFIADEVMT-GLGRTGAMFAMEHWGVEPDIMT--LGKGLGA-GYTPIAATVVS-DRVMEPILRGSRSIMSGHT  303 (447)
T ss_pred             HHHHcCCEEEEechhh-CcCcccchhhHHhcCCCCCEEE--eeehhcc-CCcceEEEEEc-HHHHHHHhccCcccccccC
Confidence            4889999999999863 22       1111222368865  5899986 32123445454 45555443110 0 12222


Q ss_pred             --CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           72 --LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        72 --~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                        -+|..+...+..|+.+..  .+++..+....+.+-|+    ++|.|..|                  +|.|.|+.+++
T Consensus       304 ~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rG~Gl~~~ie~  365 (447)
T PRK06917        304 LSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDV------------------RGKGLLIGVEF  365 (447)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE------------------eecceEEEEEE
Confidence              367777777777776632  12333333344444333    35544444                  46899999998

>PRK08637 hypothetical protein; Provisional

Probab=96.79  E-value=0.057  Score=48.96  Aligned_cols=58  Identities=12%  Similarity=0.062  Sum_probs=34.9

Q ss_pred             cCCEEEEecCCCCCCC----cCc-ccC--CC--cE-E--EecccccccCCcccceeEEEe----cChhHHHHHH
Q 027424            5 HGALLLVDNSIMSPVL----SRP-LEL--GA--DI-V--MHSATKFIAGHSDVMAGVLAV----KGERLAKELY   62 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~----~~p-l~~--GA--Di-v--v~S~tK~l~G~~d~~~G~v~~----~~~~~~~~l~   62 (223)
                      +++++|+|+.+.--..    ..+ +..  +.  .+ +  +.|++|.++..|..+|.+++.    .++++.+.+.
T Consensus       183 ~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~  256 (388)
T PRK08637        183 TKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALE  256 (388)
T ss_pred             CcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHH
Confidence            8999999998742211    111 111  11  22 3  359999988888888876643    2355555543

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=96.78  E-value=0.017  Score=54.03  Aligned_cols=120  Identities=15%  Similarity=0.186  Sum_probs=65.6

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH----H-Hhc
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----Q-NAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~----~-~~~   68 (223)
                      +|+++|+++|+|+.. |++       .+.-...-.||++  +.|-++|.-.-+++ ++.+ +++.+.+..-    . ...
T Consensus       253 lc~~~g~llI~DEV~-TG~GRtG~~~a~~~~gv~PDiv~--~gK~l~gG~~Pi~a-v~~~-~ei~~~~~~~~~~~~~~~~  327 (460)
T PRK06916        253 LCTKYNVLFITDEVA-TGFGRTGKMFACEHENVTPDIMT--AGKGLTGGYLPIAI-TVTT-DEIYNAFYGDYEEQKTFFH  327 (460)
T ss_pred             HHHHcCCEEEeechh-hCCCcCchhhHHHhcCCCCCeee--eehhhhcCccccce-eeec-HHHHHHhhccccccCcccc
Confidence            489999999999985 332       1111222369886  58998863123444 5444 4554433210    0 012


Q ss_pred             CCC--CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc---CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           69 GSG--LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        69 g~~--~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~---~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      +.+  -+|..+...+..|+.+..  ..++..+....+.+.|+.   +|.|..                  .+|.|.|+.+
T Consensus       328 ~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~------------------vrG~Glm~gi  389 (460)
T PRK06916        328 GHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGD------------------IRQLGLMVGI  389 (460)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEE------------------eecCCceeeE
Confidence            222  367777777777766532  124444444444444443   333322                  3578999999


Q ss_pred             Ee
Q 027424          142 LT  143 (223)
Q Consensus       142 ~~  143 (223)
                      ++
T Consensus       390 el  391 (460)
T PRK06916        390 EL  391 (460)
T ss_pred             Ee
Confidence            88

>PRK07481 hypothetical protein; Provisional

Probab=96.76  E-value=0.025  Score=52.73  Aligned_cols=121  Identities=21%  Similarity=0.222  Sum_probs=64.9

Q ss_pred             CccccCCEEEEecCCCC----C--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-----HhcC
Q 027424            1 MAHAHGALLLVDNSIMS----P--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-----NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-----~~~g   69 (223)
                      +|+++|+++|+|+....    +  +.+.-...-.||++-  .|.++|.-.-+++ ++++ +++.+.+....     -..+
T Consensus       242 lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~a-v~~~-~~i~~~~~~~~~~~~~~~h~  317 (449)
T PRK07481        242 VCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCL--AKGITSGYVPLGA-TMVN-ARIADAFEANADFGGAIMHG  317 (449)
T ss_pred             HHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEE--eecccCCCcCceE-EEEc-HHHHHHHhccCccccccccC
Confidence            48999999999998521    1  112222223688876  7999862123444 5454 45555443210     0122


Q ss_pred             CC--CChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           70 SG--LAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        70 ~~--~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      .+  -+|..+...+..|+.+...  +++..+....+.+.|+    ++|.|..|                  +|.|.|+.+
T Consensus       318 ~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rG~Glm~gi  379 (449)
T PRK07481        318 YTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDV------------------RGKGLMLAL  379 (449)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEE------------------eecceEEEE
Confidence            22  2676666666666655321  2333333334433333    24544443                  468999999


Q ss_pred             Ee
Q 027424          142 LT  143 (223)
Q Consensus       142 ~~  143 (223)
                      ++
T Consensus       380 ~l  381 (449)
T PRK07481        380 DL  381 (449)
T ss_pred             Ee
Confidence            98

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=96.76  E-value=0.024  Score=53.14  Aligned_cols=119  Identities=17%  Similarity=0.263  Sum_probs=65.2

Q ss_pred             CccccCCEEEEecCCC----CC--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-----HHhcC
Q 027424            1 MAHAHGALLLVDNSIM----SP--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----QNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~----s~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-----~~~~g   69 (223)
                      +|+++|+++|+|+...    ++  +.+.-...-.||++-  .|.++|.---+++ ++.+ +++.+.+..-     .-..+
T Consensus       244 lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~a-v~~~-~ei~~~~~~~~~~~~~~~h~  319 (466)
T PRK07030        244 ACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCL--SKALTGGYLPLAA-VLTT-DTVYQAFYDDYPTLRAFLHS  319 (466)
T ss_pred             HHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEee--ehhccCCcccceE-EEec-HHHHHHHhcccccccccccC
Confidence            4899999999999842    11  112222223699886  7999862123444 5454 4555443210     00122


Q ss_pred             CC--CChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHh-------cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEE
Q 027424           70 SG--LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA-------SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  140 (223)
Q Consensus        70 ~~--~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~-------~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~s  140 (223)
                      .+  -+|..|...+..|+.+..  ++..+|+.++.++|.       ++|.|..|                  +|.|.|+.
T Consensus       320 ~T~~gnpla~aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~~l~~~~~v~~v------------------rG~Gl~~g  379 (466)
T PRK07030        320 HSYTGNPLACAAALATLDIFEQ--DNVIENNRALARRMAEATAHLADHPHVAEV------------------RQTGMILA  379 (466)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHhcCCCEEEe------------------EeceeEEE
Confidence            22  367777777777766532  123334443333332       34444333                  46899999


Q ss_pred             EEe
Q 027424          141 FLT  143 (223)
Q Consensus       141 f~~  143 (223)
                      +++
T Consensus       380 ie~  382 (466)
T PRK07030        380 IEM  382 (466)
T ss_pred             EEe
Confidence            998

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=96.76  E-value=0.014  Score=54.33  Aligned_cols=100  Identities=11%  Similarity=0.093  Sum_probs=56.1

Q ss_pred             CccccCCEEEEecCCCCCCC------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-HHhcCCC--
Q 027424            1 MAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAEGSG--   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-~~~~g~~--   71 (223)
                      +|++||+++|+|+.+ +++-      +.-...-.||++  +.|.++|.  .-+|+++++ +++.+.+... ....+.+  
T Consensus       230 lc~~~g~llI~DEv~-tG~R~G~~ga~~~~gv~PDi~~--~gK~lggG--~p~~av~~~-~~i~~~~~~~~~~~~~~T~~  303 (433)
T PRK00615        230 TCRRTGSLSIMDEVV-TGFRVAQGGAAAIYHVKPDITV--YGKILGGG--LPAAAVVAH-KSIMDHLAPEGTIFQAGTLS  303 (433)
T ss_pred             HHHHcCCEEEEEccc-ccccccHhHHHHhcCCCCCeEE--EcccccCC--cceeeeeec-HHHHhhhcCCCCcccCCCCc
Confidence            488999999999997 3331      111112368876  79999853  335666554 4565544211 1112222  


Q ss_pred             CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh
Q 027424           72 LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA  106 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~  106 (223)
                      .+|..+...+..|+.+..  .+++..++...+.+.|+
T Consensus       304 g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~  340 (433)
T PRK00615        304 GNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIE  340 (433)
T ss_pred             ccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            377777777777776631  23444444555544333

>PRK12403 putative aminotransferase; Provisional

Probab=96.69  E-value=0.017  Score=54.00  Aligned_cols=120  Identities=22%  Similarity=0.284  Sum_probs=71.0

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g~~   71 (223)
                      +|+++|+++|+|+..+ ++       .+.-...-.||++  +.|.++|.---+|+++ ++ +++.+.+.....  ..+.+
T Consensus       251 lc~~~g~lLI~DEV~t-GfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~~Piga~v-~~-~~i~~~~~~~~~~~~~~~T  325 (460)
T PRK12403        251 ICRQYDVLLCADEVIG-GFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGYVPMGGLV-LS-KRIAEALVEQGGVFAHGLT  325 (460)
T ss_pred             HHHHcCCEEEEecccc-CCCcCchhhhhhhcCCCCCeEE--EcccccccccceEEEE-EC-HHHHHHHhcCCCccccCCC
Confidence            5899999999999973 32       1121222259997  8999996312455555 54 455544421100  12222


Q ss_pred             --CChHhHHHHHhcHHHHHHH--HHHHH-hHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           72 --LAPFDCWICLRGVKTMALR--VEKQQ-DNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        72 --~sp~da~ll~~~l~tl~~R--~~~~~-~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                        .+|..|...+..|+.+...  +++.. ++...+.+.|+    ++|.|..|.                  |.|.|+.++
T Consensus       326 ~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vr------------------G~Gl~~gie  387 (460)
T PRK12403        326 YSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQ------------------GAGLVAALQ  387 (460)
T ss_pred             CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEe------------------ecceEEEEE
Confidence              5787787777888776422  23442 44555555443    456555544                  689999999


Q ss_pred             e
Q 027424          143 T  143 (223)
Q Consensus       143 ~  143 (223)
                      +
T Consensus       388 ~  388 (460)
T PRK12403        388 F  388 (460)
T ss_pred             E
Confidence            8

>PLN03032 serine decarboxylase; Provisional

Probab=96.62  E-value=0.035  Score=50.74  Aligned_cols=113  Identities=19%  Similarity=0.237  Sum_probs=70.3

Q ss_pred             CccccC-----CEEEEecCCCCCCCc-----C--cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH---
Q 027424            1 MAHAHG-----ALLLVDNSIMSPVLS-----R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---   65 (223)
Q Consensus         1 ia~~~g-----~~lvVDnT~~s~~~~-----~--pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~---   65 (223)
                      +|+++|     +++-||.+++.+...     .  .+..++|-+.-|.||+++.+  .-.|++..+++. .+.+....   
T Consensus       186 i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P--~g~G~ll~r~~~-~~~~~~~~~Yl  262 (374)
T PLN03032        186 ILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCP--MPCGVALTRKKH-VKALSQNVEYL  262 (374)
T ss_pred             HHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCC--cCeEEEEEEchh-hHhhccCCccc
Confidence            356675     589999998764321     0  12347999999999998744  235777777543 23221111   


Q ss_pred             -----HhcCCC--CChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           66 -----NAEGSG--LAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        66 -----~~~g~~--~sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                           ...|.-  ..+.-.|..++  |.+.+..++++..++|..+++.|++++ +..+.-|
T Consensus       263 ~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~-~~~~~~p  322 (374)
T PLN03032        263 NSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAG-LTCRLNE  322 (374)
T ss_pred             CCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcEEECC
Confidence                 111211  12344555444  555678899999999999999999864 3444444

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=96.58  E-value=0.012  Score=54.31  Aligned_cols=51  Identities=25%  Similarity=0.244  Sum_probs=41.3

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecC
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG   54 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~   54 (223)
                      +|++.|+.+.+|.|.+-+. ..+.-+++||.+..|+||.++-.+   .|++-+++
T Consensus       206 icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~---iGaLYvr~  257 (428)
T KOG1549|consen  206 ICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPG---IGALYVRR  257 (428)
T ss_pred             HhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCc---ceEEEEcc
Confidence            5789999999999987653 345556899999999999999665   56777775

>PRK08297 L-lysine aminotransferase; Provisional

Probab=96.54  E-value=0.027  Score=52.43  Aligned_cols=165  Identities=22%  Similarity=0.255  Sum_probs=86.8

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH-H--HHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-L--QNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~-~--~~~~g~   70 (223)
                      +|+++|+++|+|+... ++.       +.-+..-.||++  +.|.++     ++|++. ++ ++.+.... .  ....+.
T Consensus       254 lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~--~gK~l~-----~~a~l~-~~-~i~~~~~~~~~~~~~~~~  323 (443)
T PRK08297        254 LCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVRPDIVA--FGKKTQ-----VCGIMA-GR-RVDEVEDNVFAVSSRINS  323 (443)
T ss_pred             HHHHcCCEEEEechhh-ccCccchHHHHHhcCCCCCEEE--eccccc-----ccceec-ch-HHHHhhhhhccCccccCC
Confidence            4899999999999963 221       111122369887  688874     456553 33 33221111 1  011222


Q ss_pred             C--CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCCCee-EEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           71 G--LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVK-KVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        71 ~--~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p~v~-~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      +  -+|..+...+..|+.+..  .+++..+....+.+.|+    ++|.+. .                  .+|.|.|+.|
T Consensus       324 T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~------------------vrg~G~~~~i  385 (443)
T PRK08297        324 TWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSN------------------VRGRGLMCAF  385 (443)
T ss_pred             CCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCccee------------------eeccceEEEE
Confidence            2  367676666666665532  12333444444444343    244321 2                  2467999999


Q ss_pred             EeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHH
Q 027424          142 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKA  217 (223)
Q Consensus       142 ~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~A  217 (223)
                      ++.+.+...+|...+.  ..|.-+        .|.                 ....+||+..    -|+.+.+++-|+++
T Consensus       386 ~~~~~~~~~~~~~~l~--~~Gvl~--------~~~-----------------~~~~lr~~P~l~~t~~eid~~l~~l~~~  438 (443)
T PRK08297        386 DLPTTADRDEVIRRLW--EEGVLV--------LPC-----------------GERSIRFRPALTVTTEEIDAAIDALRRA  438 (443)
T ss_pred             EecCHHHHHHHHHHHH--HCCEEE--------ecC-----------------CCCeEEEECCccCCHHHHHHHHHHHHHH
Confidence            9965555556655432  122111        110                 1234777433    35678888888888


Q ss_pred             Hhc
Q 027424          218 LRT  220 (223)
Q Consensus       218 l~~  220 (223)
                      |+.
T Consensus       439 l~~  441 (443)
T PRK08297        439 LPE  441 (443)
T ss_pred             HHh
Confidence            764

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=96.49  E-value=0.012  Score=54.81  Aligned_cols=104  Identities=19%  Similarity=0.099  Sum_probs=70.9

Q ss_pred             CccccCCEEEEecC--C-CC--------CCCcCccc-------CCCcEEEecccccccCCcccceeEEEecCh---hHHH
Q 027424            1 MAHAHGALLLVDNS--I-MS--------PVLSRPLE-------LGADIVMHSATKFIAGHSDVMAGVLAVKGE---RLAK   59 (223)
Q Consensus         1 ia~~~g~~lvVDnT--~-~s--------~~~~~pl~-------~GADivv~S~tK~l~G~~d~~~G~v~~~~~---~~~~   59 (223)
                      +|+++|+++.+|.+  | .+        .+.-.+++       .++|.|..|++|-++.+   +||+++.+++   ++.+
T Consensus       212 la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp---vGg~Lag~d~~~~~l~~  288 (467)
T TIGR02617       212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCFKDDSFFDVYT  288 (467)
T ss_pred             HHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc---ccceEEecchhHHHHHH
Confidence            58999999999976  1 11        11112211       57999999999999866   7999988888   5555


Q ss_pred             HHHHHH------HhcCCCCChHhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHhcC
Q 027424           60 ELYFLQ------NAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        60 ~l~~~~------~~~g~~~sp~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~~~  108 (223)
                      +++...      ..+| .++-.|-..+..||+..  ...++...+..+.|++.|++.
T Consensus       289 ~~~~~~i~~EGf~tYG-Glagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~  344 (467)
T TIGR02617       289 ECRTLCVVQEGFPTYG-GLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEI  344 (467)
T ss_pred             HHHhhcccccCCcCcC-chhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhC
Confidence            544321      1233 57888888888888863  344455556667888888765

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=96.48  E-value=0.027  Score=52.10  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             CccccCCEEEEecCCCCC---CC--cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-HHhcCC--CC
Q 027424            1 MAHAHGALLLVDNSIMSP---VL--SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAEGS--GL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~---~~--~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-~~~~g~--~~   72 (223)
                      +|+++|+++|+|+.....   +.  +.-...-.||+  .+.|-++| +--+++ ++++ +++.+.+... ....+.  .-
T Consensus       229 lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDiv--t~gK~lgg-G~Pi~a-v~~~-~~i~~~~~~~~~~~~~~T~~g  303 (428)
T PRK12389        229 LAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLT--ALGKIIGG-GLPIGA-YGGR-KDIMEQVAPLGPAYQAGTMAG  303 (428)
T ss_pred             HHHHcCCEEEEEccccccccCcchhhHHhCCCCCee--eechhhcC-CCceeE-EeEH-HHHHhhhccCCCcccccCCcc
Confidence            488999999999986321   11  11112236876  66899986 344555 4454 4565544210 001221  24


Q ss_pred             ChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh
Q 027424           73 APFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA  106 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~  106 (223)
                      +|..+...+..|+.+..  ..++..+....+.+.|+
T Consensus       304 npl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~  339 (428)
T PRK12389        304 NPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGIL  339 (428)
T ss_pred             CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            77777777777777642  23444445555555444

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=96.46  E-value=0.021  Score=53.19  Aligned_cols=121  Identities=19%  Similarity=0.252  Sum_probs=74.0

Q ss_pred             CccccCCEEEEecCCC------CCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-HH--hcCC-
Q 027424            1 MAHAHGALLLVDNSIM------SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QN--AEGS-   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~------s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-~~--~~g~-   70 (223)
                      ||++||+++|+|+-..      +.+.+.-..--.||++  +.|-++|.-.-++++++ + +++.+.+..- ..  ..|. 
T Consensus       244 iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~--~aKGLT~GY~Pl~a~l~-~-~~I~~~~~~~~~~~f~HG~T  319 (449)
T COG0161         244 ICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILC--LAKGLTGGYLPLSAVLT-S-DRIYEAFSDGDAGAFMHGHT  319 (449)
T ss_pred             HHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeee--ecccccccchhhHhHhh-h-HHHHHHHhcccCCeeccCCc
Confidence            5899999999999852      2222222112247776  56999987777777664 3 4565554432 10  1122 


Q ss_pred             -CCChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           71 -GLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        71 -~~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                       +-.|..|...+.+|+-++..  +++..+....+.+.|+    .||.|..|+                  |-|-|..+|+
T Consensus       320 YsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR------------------~~Gli~~iEl  381 (449)
T COG0161         320 YSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVR------------------GLGLIGAIEL  381 (449)
T ss_pred             cccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEee------------------ccceEEEEEE
Confidence             23788898888888887522  2444444444544444    567777766                  4677777887

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=96.39  E-value=0.044  Score=51.28  Aligned_cols=115  Identities=22%  Similarity=0.292  Sum_probs=63.6

Q ss_pred             CccccCCEEEEecCCCC----C--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--C
Q 027424            1 MAHAHGALLLVDNSIMS----P--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--L   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--~   72 (223)
                      +|+++|+++|+|+....    +  +.+.-...-.||++-  .|.++| +--++ +++.++ ++ +.+..  ...+.+  -
T Consensus       254 lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~--gK~l~g-G~Pi~-av~~~~-~~-~~~~~--~~~~~T~~g  325 (459)
T PRK06931        254 VTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVM--SKAVGG-GLPLA-VLGIKK-EF-DAWQP--GGHTGTFRG  325 (459)
T ss_pred             HHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEe--cccccC-Cccee-eeeeHH-HH-hhccC--CCCCCCCCC
Confidence            48999999999998421    1  122222233688876  799987 34454 454443 33 32211  112222  3


Q ss_pred             ChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHH--------hcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           73 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFL--------ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L--------~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      +|..+...+..|+.+..  +...+++..+.++|        ++||.|..|                  +|.|.|+.+++
T Consensus       326 npla~aaala~L~~l~~--~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~v------------------rG~Glm~giel  384 (459)
T PRK06931        326 NQLAMATGLTTLKILKE--ENLAQNAAERGEWLKAQLAELQKRYPCIGNV------------------RGRGLMIGIEI  384 (459)
T ss_pred             CHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEeE------------------ecCceEEEEEE
Confidence            67777766666666532  12233333333333        345655444                  46899999998

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=96.39  E-value=0.04  Score=50.11  Aligned_cols=113  Identities=18%  Similarity=0.221  Sum_probs=63.6

Q ss_pred             CccccCCEEEEecCCC-----CCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC--CCC
Q 027424            1 MAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--GLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~-----s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~--~~s   73 (223)
                      +|+++|+++|+|+...     +.+.+.-...-.||++-  .|.++| +--+++ ++.+.+ +..      ...+.  .-+
T Consensus       191 lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~--gK~lgg-G~P~~a-~~~~~~-~~~------~~~~~T~~gn  259 (364)
T PRK04013        191 LTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTM--GKGIGN-GVPVSL-TLTNFD-VER------GKHGSTFGGN  259 (364)
T ss_pred             HHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEe--cccccC-CceeEE-EEeccc-ccC------CCcCCCCCcC
Confidence            4899999999999853     22222223344687776  899997 444555 445443 311      01121  246


Q ss_pred             hHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           74 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        74 p~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      |..+...+..|+.+...  ...+|+.++-+.++ +|.|..                  .+|.|.|+.+++.+
T Consensus       260 p~~~aaa~a~l~~i~~~--~l~~~~~~~l~~l~-~~~v~~------------------vRG~Gl~~gve~~~  310 (364)
T PRK04013        260 PLACKAVAVTLRILRRE--RLVEKAGEKFIEIK-GERVVT------------------TRGRGLMIGIVLKK  310 (364)
T ss_pred             HHHHHHHHHHHHHHHhc--cHHHHHHHHHHHhc-cCccee------------------eeeCcEEEEEEeCC
Confidence            77777777777766432  23334433322221 233322                  35789999999943

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=96.27  E-value=0.0076  Score=54.92  Aligned_cols=115  Identities=23%  Similarity=0.288  Sum_probs=74.8

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccC---CCcEEEecccccccCCcccceeEEEecChhHHHH-H----HHHHH--
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLEL---GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-L----YFLQN--   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~---GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~-l----~~~~~--   66 (223)
                      +|+++++++=||.+||...+    .+++..   +||=+.-+.||++.-+  -.+|++..+++..... +    .++.+  
T Consensus       219 i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P--~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~  296 (373)
T PF00282_consen  219 ICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVP--YGCGVLLVRDKSDLRDAFSINADYLGNDD  296 (373)
T ss_dssp             HHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-S--SS-EEEEESSGGGHHGGGEEEETCTT-S-
T ss_pred             hccccceeeeecccccccccccccccccccccccccccccchhhhhcCC--ccceeEEeecccchHHHhccChhhhcccc
Confidence            47889999999999988433    222222   6899999999999844  4577787777653221 1    00000  


Q ss_pred             ----------hcCCCCC----hHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           67 ----------AEGSGLA----PFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        67 ----------~~g~~~s----p~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                                ..+...|    +.-.|+.++  |.+-+..++++..++|+.++++|+++|.++-|.-|
T Consensus       297 ~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~  363 (373)
T PF00282_consen  297 RESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEP  363 (373)
T ss_dssp             SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTT
T ss_pred             cccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence                      0111112    245666555  66668999999999999999999999986554434

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=96.19  E-value=0.34  Score=43.30  Aligned_cols=104  Identities=15%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             CccccCCEEEEecCC---CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH--------------
Q 027424            1 MAHAHGALLLVDNSI---MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--------------   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~---~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~--------------   63 (223)
                      +||+|++.++||..-   ++++  .--++|+|++..-.-|.++++.-.  +.+ +-++...++++.              
T Consensus       168 lc~k~~~lllVD~VaSlggt~F--~mDewgVDvaytgSQKaL~aP~GL--sii-sfS~ka~~~~~~rK~~~~~~yFd~~~  242 (385)
T KOG2862|consen  168 LCHKHEALLLVDTVASLGGTEF--EMDEWGVDVAYTGSQKALGAPAGL--SII-SFSDKALEAIRDRKTKPVSFYFDILR  242 (385)
T ss_pred             HhhcCCeEEEEechhhcCCccc--eehhhcccEEEecchhhcCCCCCc--cee-ecCHHHHHHHhhccCCceEEEEeHHh
Confidence            589999999999763   3444  334789999999999999988422  233 333333233321              


Q ss_pred             HHHhcCCC---------CChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCC
Q 027424           64 LQNAEGSG---------LAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        64 ~~~~~g~~---------~sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p  109 (223)
                      +.+..|+.         .+-.-.|-|..+|+-     ++.++++|.+++..+-..|+++.
T Consensus       243 ~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~G  302 (385)
T KOG2862|consen  243 LGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALG  302 (385)
T ss_pred             hcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            11222321         222223333333333     57889999999999988888864

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=96.16  E-value=0.063  Score=48.15  Aligned_cols=179  Identities=18%  Similarity=0.193  Sum_probs=98.8

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecCh--hHHHHH----------HHH---
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--RLAKEL----------YFL---   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~--~~~~~l----------~~~---   64 (223)
                      +||++|++++.|=++..+.. ..--..|||.-|-+..||++|.--..+|+-+....  +.+..+          ...   
T Consensus       191 ~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y  270 (407)
T COG3844         191 LAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVY  270 (407)
T ss_pred             HHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhcc
Confidence            58999999999999977643 33334699999999999999766677775543221  111000          000   


Q ss_pred             ------HHhcCCCCChHhHHHHHhcHHHHH-HHHHHHH----hHHHHHHHHHhcCCC--eeEEEcCCCCCCcchHHHHhh
Q 027424           65 ------QNAEGSGLAPFDCWICLRGVKTMA-LRVEKQQ----DNAQKIAEFLASHPR--VKKVNYAGLPEHPGHELHYSQ  131 (223)
Q Consensus        65 ------~~~~g~~~sp~da~ll~~~l~tl~-~R~~~~~----~na~~la~~L~~~p~--v~~V~yP~l~~~~~~~~~~~~  131 (223)
                            .+..-.+.+-.+...+..+|+-+. .-|.+..    .-+..+.+-++.+..  --.+.-|     -.|+     
T Consensus       271 ~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tP-----r~~~-----  340 (407)
T COG3844         271 APGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTP-----RAHE-----  340 (407)
T ss_pred             CcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEecc-----chhh-----
Confidence                  111111223344455556666542 1133333    333444444555432  1122222     1121     


Q ss_pred             hCCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEE-----EEecCCC
Q 027424          132 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR-----ISVGIED  206 (223)
Q Consensus       132 ~~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liR-----lsvGlEd  206 (223)
                        -.|+=+||......++.+-+..-.++      |+.+                        .|+.+|     +.++.+|
T Consensus       341 --~rGsqvS~~hp~~~~V~qaLi~rGVi------gD~R------------------------~P~vlRfgftPlY~~~~D  388 (407)
T COG3844         341 --ERGSQVSLYHPHGYQVMQALIDRGVI------GDFR------------------------EPDVLRFGFTPLYVSFVD  388 (407)
T ss_pred             --hccceeeEecCcHHHHHHHHHHcCcc------cccc------------------------CCCeeeecCccceechhH
Confidence              25888999986555554444444443      3322                        234444     4677889


Q ss_pred             HHHHHHHHHHHHhcC
Q 027424          207 VNDLISDLDKALRTG  221 (223)
Q Consensus       207 ~~dL~~dl~~Al~~~  221 (223)
                      +=+=.+.|+++|+++
T Consensus       389 Vw~AV~~L~evL~t~  403 (407)
T COG3844         389 VWDAVDALEEVLDTL  403 (407)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888888888888764

>PLN02452 phosphoserine transaminase

Probab=96.10  E-value=0.095  Score=47.69  Aligned_cols=131  Identities=13%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             CCEEEEecCCCCCCCcCccc---CCCcEEEecccccccCCcccceeEEEecChhHHHHHH-------HHHHh--cC---C
Q 027424            6 GALLLVDNSIMSPVLSRPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-------FLQNA--EG---S   70 (223)
Q Consensus         6 g~~lvVDnT~~s~~~~~pl~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~-------~~~~~--~g---~   70 (223)
                      +++++||.+-.  +...|++   +|+|+  .|..|.++ +.- + |+++++++.+ +++.       .+...  .+   .
T Consensus       170 ~~~lvVDa~Ss--~g~~pidv~~~~v~~--~saqK~lG-P~G-l-~~v~vr~~~l-~~~~~~~~~~~~~~~~~~~~s~~~  241 (365)
T PLN02452        170 NVPLVADMSSN--FLSKPVDVSKYGVIY--AGAQKNVG-PSG-V-TIVIIRKDLI-GNARPITPGMLDYKIHAENDSLYN  241 (365)
T ss_pred             CCeEEEECCcc--ccCcccCHHHcCEEE--EecccccC-CCC-e-EEEEEcHHHH-hhcccCCCchhhHHHHHhcCCccC
Confidence            47999998843  2234443   56544  69999995 432 3 4565665433 2211       11100  01   1


Q ss_pred             CCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           71 GLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        71 ~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      +.+-...|.+...|+.+      ..+.++..+.+..+-++|++.+++   +.+..  .|.+    |    ....++|.+.
T Consensus       242 TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~---y~~~~--~~~~----r----s~~~vsF~~~  308 (365)
T PLN02452        242 TPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF---YVCPV--EKSV----R----SLMNVPFTLG  308 (365)
T ss_pred             ChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc---ccCCC--ChHH----h----CCeEEEEEcC
Confidence            22225566666677754      456788899999999999988765   22211  1111    1    3568999986


Q ss_pred             CHHHHHHHHhhcC
Q 027424          145 SLALSKHVVETTK  157 (223)
Q Consensus       145 ~~~~~~~f~~~l~  157 (223)
                      +.+..++|++.++
T Consensus       309 ~~~~~~~f~~~~~  321 (365)
T PLN02452        309 GSELEAEFVKEAA  321 (365)
T ss_pred             CchhHHHHHHHHH
Confidence            6566788887765

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=96.00  E-value=0.055  Score=54.20  Aligned_cols=121  Identities=16%  Similarity=0.190  Sum_probs=71.0

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH----HhcCC
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----NAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~----~~~g~   70 (223)
                      +|+++|+++|+|+.+...      +.+.-+..-.||++.  .|-++|.=.-+++++ ++ +++.+.+..-.    -..|.
T Consensus       614 lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~--gKgLtgG~~Plaa~l-~~-~~I~~~f~~~~~~~~~~hg~  689 (817)
T PLN02974        614 VCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACY--AKLLTGGLVPLAATL-AT-EEVFEAFRGPSKLDALLHGH  689 (817)
T ss_pred             HHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEee--cccccCCCCccEEEE-Ec-HHHHHhhccccccCCcccCC
Confidence            589999999999997322      112222223699885  599986323455544 44 45655442100    01222


Q ss_pred             C--CChHhHHHHHhcHHHHHHH--HHHHHhHHHH--------HHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCee
Q 027424           71 G--LAPFDCWICLRGVKTMALR--VEKQQDNAQK--------IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  138 (223)
Q Consensus        71 ~--~sp~da~ll~~~l~tl~~R--~~~~~~na~~--------la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl  138 (223)
                      +  -.|..|...+..|+.+..-  +++..+++..        +.+.|+.||.|..|+                  |.|.|
T Consensus       690 Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VR------------------g~Gl~  751 (817)
T PLN02974        690 SYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVV------------------SLGTV  751 (817)
T ss_pred             CCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEE------------------eeeeE
Confidence            2  3677888888888876431  1233333322        324456688887776                  57899


Q ss_pred             EEEEe
Q 027424          139 LSFLT  143 (223)
Q Consensus       139 ~sf~~  143 (223)
                      +++++
T Consensus       752 ~~iel  756 (817)
T PLN02974        752 LALEL  756 (817)
T ss_pred             EEEEE
Confidence            99998

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=95.96  E-value=0.19  Score=46.01  Aligned_cols=115  Identities=13%  Similarity=0.040  Sum_probs=75.7

Q ss_pred             CccccCCEEEEecCCCCCC-CcC---ccc-CC---CcEEEecccccccCCcccceeEEEecChhHH---HHHHHHHHhcC
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSR---PLE-LG---ADIVMHSATKFIAGHSDVMAGVLAVKGERLA---KELYFLQNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~---pl~-~G---ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~---~~l~~~~~~~g   69 (223)
                      +|+++|+++|-|+-++--+ .-+   |+. +.   .=|.+.|.+|-.-=+|=.+||.++-.+..+.   ..+..+.+..+
T Consensus       227 ~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~  306 (447)
T KOG0259|consen  227 TAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLD  306 (447)
T ss_pred             HHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHHHh
Confidence            3789999999999964211 112   221 11   1378889999866556678876643332221   22345566667


Q ss_pred             CCCChHhHHHHHhcHHHH---------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           70 SGLAPFDCWICLRGVKTM---------ALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---------~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      .+..|  +..+..+|.+.         ..+..-.-.|+.-.-++|+.-|.+....-|
T Consensus       307 ~~~~p--~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kP  361 (447)
T KOG0259|consen  307 IIPGP--ATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKP  361 (447)
T ss_pred             ccCCc--cHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCC
Confidence            67778  77777788774         455677788999999999999976544444

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=95.86  E-value=0.025  Score=53.17  Aligned_cols=128  Identities=15%  Similarity=0.158  Sum_probs=65.2

Q ss_pred             CccccCCEEEEecCCCCCCCc-------CcccC--CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-------RPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-------~pl~~--GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|+.. +++..       .-...  -.||++-  .|-++|.     |.++. .+.+.. ..  ....+.+
T Consensus       280 lc~~~g~lLI~DEV~-tGfGrtG~~fa~e~~gv~~~PDi~t~--gK~lg~g-----G~~~~-~~~~~~-~~--~~~~~~T  347 (464)
T TIGR00699       280 ITKKHNVAFIVDEVQ-TGVGATGKFWAHEHWNLDDPPDMVTF--SKKFQTA-----GYFFH-DPAFRP-NK--PYRQFNT  347 (464)
T ss_pred             HHHHcCCEEEEeeee-eCCCCCcchhHHHhcCCCCCCCEEEe--hhhhccC-----Ccccc-chhccC-CC--CcccccC
Confidence            489999999999996 33321       11111  2788664  8999532     22222 221110 00  0011222


Q ss_pred             --CChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHh----cCC-CeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           72 --LAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLA----SHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        72 --~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~----~~p-~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                        -+|..+......|+.+...  .++..+....+.+.|+    ++| .|..|+.                .|.|.|+.++
T Consensus       348 ~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg----------------~G~Glm~gie  411 (464)
T TIGR00699       348 WMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRG----------------KGRGTFIAWD  411 (464)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc----------------cCeEEEEEEe
Confidence              2566666666666665321  1222222233333333    355 3444432                2579999999


Q ss_pred             eCCHHHHHHHHhhc
Q 027424          143 TGSLALSKHVVETT  156 (223)
Q Consensus       143 ~~~~~~~~~f~~~l  156 (223)
                      +.+.+.+.+|++.+
T Consensus       412 ~~~~~~~~~i~~~~  425 (464)
T TIGR00699       412 TPDEAKRDKLLKKA  425 (464)
T ss_pred             cCCHHHHHHHHHHH
Confidence            96655556665543

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=95.82  E-value=0.058  Score=49.55  Aligned_cols=166  Identities=20%  Similarity=0.357  Sum_probs=89.4

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--   71 (223)
                      +|++||+++|+|+-= |++       .+.-...-.||++  +.|-++|. -=+|. ++.+ +.+.+.+.  ....|++  
T Consensus       213 lCd~~g~LLI~DEVQ-tG~GRTGk~fA~e~~gV~PDI~t--laK~LgGG-~PigA-~la~-~~~~~~~~--~G~HgSTfG  284 (404)
T COG4992         213 LCDEHGALLILDEVQ-TGLGRTGKLFAYEHYGVEPDILT--LAKALGGG-FPIGA-MLAT-EEIASAFT--PGDHGSTFG  284 (404)
T ss_pred             HHHHhCeEEEEeccc-cCCCccchHHHHHHhCCCCCEEE--eeccccCC-cccee-eEEc-hhhhhcCC--CCcccCCCC
Confidence            589999999999972 222       1111112247765  68999985 55554 5455 33333221  1222322  


Q ss_pred             CChHhHHHHHhcHHHHHHHHHHHHhHHHHHHH----HHhc----CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           72 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAE----FLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~R~~~~~~na~~la~----~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      =+|..|......|+.+..  +...+|+++..+    .|++    +|.|+.                  .+|-|=|+-+++
T Consensus       285 GNpLacAv~~a~l~~l~~--e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~------------------vRG~GLmiGiel  344 (404)
T COG4992         285 GNPLACAVALAVLEVLLE--EGLLENVREKGEYLLQRLRELKRRYPLVKE------------------VRGRGLMIGIEL  344 (404)
T ss_pred             cCHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHhhcCCceee------------------eecceeEEEEEe
Confidence            267777777777776531  233333333333    3332    333333                  357899999999


Q ss_pred             CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHh
Q 027424          144 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDKALR  219 (223)
Q Consensus       144 ~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~Al~  219 (223)
                      .....+..+++.+.--.          ++..++                 .++.|||.    |--|+.++.++-|++||+
T Consensus       345 ~~~~~a~~~~~~~~~~g----------vL~~~a-----------------~~~ViR~~PpL~i~~eei~~~~~~l~~~l~  397 (404)
T COG4992         345 KEPYRARDIVRALREEG----------VLVLPA-----------------GPNVIRFLPPLVITEEEIDEALDALERALA  397 (404)
T ss_pred             cCcccHHHHHHHHHHCC----------eEEecC-----------------CCCeEEecCCccCCHHHHHHHHHHHHHHHH
Confidence            54323344443332110          111110                 23456654    555788899999999987


Q ss_pred             cC
Q 027424          220 TG  221 (223)
Q Consensus       220 ~~  221 (223)
                      ..
T Consensus       398 ~~  399 (404)
T COG4992         398 AA  399 (404)
T ss_pred             Hh
Confidence            53

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=95.70  E-value=0.024  Score=50.20  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=77.0

Q ss_pred             CccccCCEEEEecC------CCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC-
Q 027424            1 MAHAHGALLLVDNS------IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA-   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT------~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s-   73 (223)
                      +|+++|++|=+|.+      .++.+..+-+-.-+|=|--=++|-++.+   +| .|++.+..++++-++.+..+|..+- 
T Consensus       183 lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAP---VG-SViVG~k~FI~kA~~~RKalGGGmRQ  258 (384)
T KOG1368|consen  183 LAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAP---VG-SVIVGSKDFIDKARHFRKALGGGMRQ  258 (384)
T ss_pred             HHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCC---cc-cEEEccHHHHHHHHHHHHHhcCchhH
Confidence            47899999999976      2334332222234677777789999876   44 4556677888888888888876652 


Q ss_pred             -hHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCC
Q 027424           74 -PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  120 (223)
Q Consensus        74 -p~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~  120 (223)
                       ..=|...+-+|+.-...++.--+.|..||+++++-+.+ +|.-|.-+
T Consensus       259 sGvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i-~v~v~a~e  305 (384)
T KOG1368|consen  259 SGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEI-RVEVPAVE  305 (384)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccce-eeecchhh
Confidence             22233334445443445677778899999999976655 77777543

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=95.70  E-value=0.12  Score=48.64  Aligned_cols=119  Identities=22%  Similarity=0.285  Sum_probs=64.5

Q ss_pred             CccccCCEEEEecCCC----CC--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH----HHhcCC
Q 027424            1 MAHAHGALLLVDNSIM----SP--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----QNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~----s~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~----~~~~g~   70 (223)
                      +|+++|+++|+|+...    ++  +.+.-...-.||++-  .|.++|.---+++++ .+ +++.+.+...    .-..+.
T Consensus       266 lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~--gKgl~gG~~Plaav~-~~-~ei~~~~~~~~~~~~~~h~~  341 (472)
T PRK08742        266 LCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCL--SKGLTGGFLPLSAVL-AT-QQLYDAFLDDSRERAFLHSH  341 (472)
T ss_pred             HHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEE--cccccCCCCCcceee-cc-HHHHHHhhccCccCccCcCC
Confidence            4899999999999842    11  112222223688886  799986312355544 44 4555443210    001232


Q ss_pred             C--CChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHH-------HhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           71 G--LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF-------LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        71 ~--~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~-------L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      +  -+|..|...+..|+-+..  +...+|+.++.++       +++||.|..|                  +|.|.|+.|
T Consensus       342 T~~gnpl~~Aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~~~~~~~~~~i~dv------------------RG~Gl~~gi  401 (472)
T PRK08742        342 SYTGNPLACAAALATLDIFAD--DDVIARNQPTAARMTQLAAQIGEHPHVADV------------------RQAGMVVAF  401 (472)
T ss_pred             CCCccHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHhcCCCeeeE------------------eccceEEEE
Confidence            3  267666666666665421  1223333333333       3445544444                  468999999


Q ss_pred             Ee
Q 027424          142 LT  143 (223)
Q Consensus       142 ~~  143 (223)
                      ++
T Consensus       402 el  403 (472)
T PRK08742        402 EL  403 (472)
T ss_pred             Ee
Confidence            98

>PRK06148 hypothetical protein; Provisional

Probab=95.70  E-value=0.12  Score=53.00  Aligned_cols=117  Identities=21%  Similarity=0.205  Sum_probs=65.8

Q ss_pred             CccccCCEEEEecCCC----CC---CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--
Q 027424            1 MAHAHGALLLVDNSIM----SP---VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~----s~---~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--   71 (223)
                      +|+++|+++|+|+...    ++   +.+.-...-.||++.  .|.++| |--+|+ ++++ +++.+.+..- ...+.+  
T Consensus       813 lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~--gK~lgg-G~Plga-v~~~-~ei~~~~~~g-~~~~~Tf~  886 (1013)
T PRK06148        813 MVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTM--GKPIGN-GHPMGA-VVTT-REIADSFDNG-MEYFNTFG  886 (1013)
T ss_pred             HHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeee--cccccC-CcceEE-EEEc-HHHHhhccCC-CccccCCC
Confidence            4799999999999852    11   112212223688775  899986 344555 5454 4565543210 001122  


Q ss_pred             CChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHh--------cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           72 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA--------SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~--------~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      -+|..|...+..|+.+..  +...+|+.++.++|+        +||.|..|                  +|.|.|+.+++
T Consensus       887 gnpla~aaa~a~L~~i~~--e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~V------------------rG~Gl~~gvel  946 (1013)
T PRK06148        887 GNPVSCAIGLAVLDIIED--EDLQRNALEIGNYLLAGLRELQDRFDIIGDV------------------RGMGLFLGIEL  946 (1013)
T ss_pred             CCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCceEE------------------eeeceEEEEEe
Confidence            367777777677766532  233344444444433        34544443                  47899999998

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=95.63  E-value=0.36  Score=42.26  Aligned_cols=168  Identities=17%  Similarity=0.203  Sum_probs=87.9

Q ss_pred             cCCEEEEecCCCCCCC-cCccc----CCCcEEEecccccccCCcccceeEEEe---cChhHHHHHHHHHHhcCCCCChHh
Q 027424            5 HGALLLVDNSIMSPVL-SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAV---KGERLAKELYFLQNAEGSGLAPFD   76 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~-~~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~---~~~~~~~~l~~~~~~~g~~~sp~d   76 (223)
                      -+.+||||+++--... -+.+.    +--=+|++.++|.++-     +|.=++   -+.++.+-+......+.  +|...
T Consensus       190 ~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsfGL-----AGiRvG~~~~~~~ia~iln~~KaPYN--iS~~~  262 (375)
T KOG0633|consen  190 DNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSFGL-----AGIRVGYGAFPLSIAEILNRAKAPYN--ISVAG  262 (375)
T ss_pred             CCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhcCc-----ceeEeecccccHHHHHHHHhccCCcc--ccchh
Confidence            3689999999622111 11111    1123889999999983     443332   23344443333322222  12211


Q ss_pred             HHHHHh-----cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-C-CHHHH
Q 027424           77 CWICLR-----GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-G-SLALS  149 (223)
Q Consensus        77 a~ll~~-----~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~-~~~~~  149 (223)
                      +...+.     +++.++.--..+.+.-.+|-.-|..-|.+..  |||-              .....+-+++ + +...+
T Consensus       263 s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~--~~gg--------------~daNFiLi~v~~~~n~~a  326 (375)
T KOG0633|consen  263 SVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLND--YPGG--------------SDANFILIEVTGGDNGMA  326 (375)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccC--CCCc--------------ccccEEEEEEcCCCcHHH
Confidence            222222     4556666667777778888888988888766  6631              1345555665 3 33334


Q ss_pred             HHHH-hhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHH
Q 027424          150 KHVV-ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDKA  217 (223)
Q Consensus       150 ~~f~-~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd-~~dL~~dl~~A  217 (223)
                      ++.+ ..+.-...-+-+=|.+                     .| -.|.+|++||-++ -.-|++-|+|-
T Consensus       327 kkly~q~at~~gVvVRfrgse---------------------~~-c~G~lRitvGt~EentvL~k~~K~~  374 (375)
T KOG0633|consen  327 KKLYKQDATKMGVVVRFRGSE---------------------EG-CKGYLRITVGTPEENTVLMKCLKQF  374 (375)
T ss_pred             HHHHHHHHHhcceEEEEcCCc---------------------cc-cceeEEEEcCCcccchHHHHHHHhh
Confidence            4433 2221111111111111                     11 3578999999654 56777777764

>PRK07480 putative aminotransferase; Validated

Probab=95.34  E-value=0.21  Score=46.79  Aligned_cols=121  Identities=22%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             CccccCCEEEEecCCCC----C--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH-HHH-hcCC--
Q 027424            1 MAHAHGALLLVDNSIMS----P--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN-AEGS--   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~-~~~-~~g~--   70 (223)
                      +|+++|+++|+|+....    +  +.+.-...-.||++  +.|.++|.---+++++ .+ +++.+.+.. ... ..+.  
T Consensus       248 lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG~~Pi~av~-~~-~~i~~~~~~~~~~~~~~~T~  323 (456)
T PRK07480        248 ICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT--IAKGLTSGYIPMGAVG-VG-DRVAEVLIEEGGEFNHGFTY  323 (456)
T ss_pred             HHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee--eehhhccCCccceEEE-Ec-HHHHHHHhcCCCCcccCCCC
Confidence            58999999999998521    1  11221112257765  5899986211255544 54 455554421 000 1121  


Q ss_pred             CCChHhHHHHHhcHHHHHH-H-HHHH-HhHHHHHHHHHh---cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           71 GLAPFDCWICLRGVKTMAL-R-VEKQ-QDNAQKIAEFLA---SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        71 ~~sp~da~ll~~~l~tl~~-R-~~~~-~~na~~la~~L~---~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      .-+|..|...+..|+.+.. . +++. .+....+.+.|+   +||.|..|                  +|.|.|+.+++
T Consensus       324 ~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l~~~~~i~~v------------------rG~Glm~gie~  384 (456)
T PRK07480        324 SGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRELADHPLVGEV------------------RGVGLVGAIEL  384 (456)
T ss_pred             CcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhcCCCeeeE------------------EeecceEEEEE
Confidence            2467777777777776642 1 1222 233444444444   34433333                  47899999998

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=95.31  E-value=0.35  Score=46.16  Aligned_cols=53  Identities=11%  Similarity=0.077  Sum_probs=34.8

Q ss_pred             cccc--CCEEEEecCCCCCCC--cCcccCCC--cEEEecccccccCCcccceeEEEecCh
Q 027424            2 AHAH--GALLLVDNSIMSPVL--SRPLELGA--DIVMHSATKFIAGHSDVMAGVLAVKGE   55 (223)
Q Consensus         2 a~~~--g~~lvVDnT~~s~~~--~~pl~~GA--Divv~S~tK~l~G~~d~~~G~v~~~~~   55 (223)
                      |+++  +++||+|+.++....  ...+..-.  =|+++|++|+++-.|-.+|.++ .+++
T Consensus       269 a~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~-~~~~  327 (521)
T TIGR03801       269 VANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRLGTIA-LHKD  327 (521)
T ss_pred             HHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCchhhhhhhh-cCch
Confidence            5555  899999999864321  11122211  2899999999987777886644 5543

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK07483 hypothetical protein; Provisional

Probab=95.19  E-value=0.14  Score=47.73  Aligned_cols=120  Identities=15%  Similarity=0.212  Sum_probs=64.8

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcc-cceeEEEecChhHHHHHHHHH--HhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQ--NAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d-~~~G~v~~~~~~~~~~l~~~~--~~~g~~   71 (223)
                      +|++||+++|+|+....-      +.+.-...-.||++-  .|.++| +- -+++ ++.++ ++.+.+..-.  -..+.+
T Consensus       229 lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~g-G~~Pi~a-v~~~~-~i~~~~~~~~~~~~h~~T  303 (443)
T PRK07483        229 VCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTI--AKGLGA-GYQPIGA-VLASD-RIYDAIADGSGFFQHGHT  303 (443)
T ss_pred             HHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeee--hhhhcc-CccccEE-EEEcH-HHHHHHhcCCCccccCCC
Confidence            589999999999984211      111112223688876  799986 32 2444 54544 5554442110  012222


Q ss_pred             --CChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHH----hcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           72 --LAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFL----ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        72 --~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L----~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                        -+|..+...+..|+.+...  +++..+....+.+.|    ++||.|..|                  +|.|.|+.+++
T Consensus       304 ~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------RG~Glm~gie~  365 (443)
T PRK07483        304 YLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDI------------------RGRGLFVGVEL  365 (443)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeeeE------------------eecccEEEEEE
Confidence              3677776666666655321  233333333333333    345544444                  46899999998

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=94.95  E-value=1.5  Score=39.99  Aligned_cols=137  Identities=13%  Similarity=0.086  Sum_probs=81.3

Q ss_pred             cccCCEEEEecCCCCCCCcCcccCC-CcEEEecccccccCCcccceeEEEecChhHHHHHH-------HH---HHh--cC
Q 027424            3 HAHGALLLVDNSIMSPVLSRPLELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-------FL---QNA--EG   69 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~~~~~pl~~G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~-------~~---~~~--~g   69 (223)
                      +.+++++|||.+-  .+..+|++.- -|+++-|.-|.++-.|   .++++.+++.+ ++..       .+   ...  +-
T Consensus       165 ~~~~~llvvD~sS--~~~s~pid~~~~dvi~agsQKnlgP~G---ltvvivs~~al-~~~~~~~p~~ldy~~~~~~~s~~  238 (364)
T PRK12462        165 GLPDSPLIADMSS--DFMSRPFDVEAYGMVYAHAQKNLGPAG---VTVAIIRRALL-ERVPDTLPPMLDFRTHVEHRSNY  238 (364)
T ss_pred             ccCCCeEEEEcCc--hhhCCCCChHHccEEEeeccccCCCCc---eEEEEECHHHH-hhccccCCchhhHHHHHhcCCCC
Confidence            4468999999883  3344555532 3999999999998333   23565665433 2211       11   111  11


Q ss_pred             CCCChHhHHHHHhcHHHH-------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           70 SGLAPFDCWICLRGVKTM-------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl-------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      .+.+-+..|.+...++.+       ..+.+++.+.|..+-+++++.+.+    |+.-.. |.   .+     .=--++|.
T Consensus       239 nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~----~~~~~~-~~---~R-----S~mnv~f~  305 (364)
T PRK12462        239 NTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEV----IDCHAH-RA---AR-----STMNVAFR  305 (364)
T ss_pred             CCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCc----ccCCCC-hh---hc-----CcceEEEE
Confidence            122335666666666654       355688899999999999998742    332211 11   11     12236677


Q ss_pred             eCCHHHHHHHHhhcCc
Q 027424          143 TGSLALSKHVVETTKY  158 (223)
Q Consensus       143 ~~~~~~~~~f~~~l~l  158 (223)
                      +.+++..++|+...+-
T Consensus       306 ~~~~~l~~~f~~~a~~  321 (364)
T PRK12462        306 FRQPRLDTLFKEQSTE  321 (364)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            7777778888877653

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=94.84  E-value=0.41  Score=42.68  Aligned_cols=139  Identities=20%  Similarity=0.177  Sum_probs=85.2

Q ss_pred             CCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--C-ChHhH-HHH
Q 027424            6 GALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--L-APFDC-WIC   80 (223)
Q Consensus         6 g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--~-sp~da-~ll   80 (223)
                      ++.+.|||-+|-.+- ..|...|||+...|+-|-.+|.--..||.+.++ +++.+.........|..  - +.+++ ..+
T Consensus       201 n~ivFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk-~~~ve~~~yRlTaPGIG~e~Gat~~~l~~m  279 (416)
T COG4100         201 NVIVFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGK-AELVEAAAYRLTAPGIGREGGATLYSLREM  279 (416)
T ss_pred             CEEEEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeech-HHHHHhhceeeecCCccccccccHHHHHHH
Confidence            588999999987664 668899999999999999998777788988754 45544332211111110  0 11222 223


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~  159 (223)
                      .+|+=-.+.-..+..+-|...|.+|++..      ||..   |-+. .+|    .--+=++.|++++..-+|+.+++-.
T Consensus       280 yqGlFlAPhvv~qa~Kga~fta~~le~lg------~~~~---P~~~-~kR----tDlIQavkf~~~eKmIaFcqaiQ~a  344 (416)
T COG4100         280 YQGLFLAPHVVSQAVKGAHFTARFLEKLG------FPVN---PKYD-AKR----TDLIQAVKFGSKEKMIAFCQAIQAA  344 (416)
T ss_pred             HhhhccchHHHHHHhhhhHHHHHHHHHcC------CCCC---Cccc-ccc----cchhhheecCCHHHHHHHHHHHhhc
Confidence            33433334445677778888888888643      3322   2221 111    1223346678888888898887643

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=94.83  E-value=0.25  Score=45.12  Aligned_cols=101  Identities=18%  Similarity=0.244  Sum_probs=63.3

Q ss_pred             cCCEEEEecCCCCCCCcCcccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHHH---------HH---------
Q 027424            5 HGALLLVDNSIMSPVLSRPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---------LQ---------   65 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~~pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~---------~~---------   65 (223)
                      +++++|||.+-+-  ...|++. +.|+++.|.-|.++++.  -.+.++.+++.+ ++...         +.         
T Consensus       154 ~~~lliVDavSs~--g~~~l~~d~iDv~~tgsQK~L~~pp--Gls~v~vs~~Al-~~~~~~~~y~~~~~~~~~~~~~~~~  228 (374)
T TIGR01365       154 REGLTICDATSAA--FAQDLDYHKLDVVTFSWQKVLGGEG--AHGMLILSPRAV-ARLESYTPAWPLPKIFRLTKGGKLN  228 (374)
T ss_pred             CCCcEEEEccchh--cCCCCChhHCcEEEEechhccCCCC--ceEEEEECHHHH-HHHhhcCCCCCChhhhccccccchh
Confidence            5899999988422  2233332 59999999999999874  234555665433 22221         00         


Q ss_pred             -Hhc-C--CCCCh-HhHHHHHhcHH------HHHHHHHHHHhHHHHHHHHHhcCCC
Q 027424           66 -NAE-G--SGLAP-FDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        66 -~~~-g--~~~sp-~da~ll~~~l~------tl~~R~~~~~~na~~la~~L~~~p~  110 (223)
                       ... +  ..+.| +..|.+.+.|+      -+..|.+|+.+++..+-+++++.+.
T Consensus       229 ~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~  284 (374)
T TIGR01365       229 KKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNW  284 (374)
T ss_pred             hhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence             001 1  12233 33444455553      2678999999999999999999874

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK07046 aminotransferase; Validated

Probab=94.82  E-value=0.14  Score=47.81  Aligned_cols=120  Identities=19%  Similarity=0.172  Sum_probs=65.3

Q ss_pred             CccccCCEEEEecCCC--CCCC--cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-------HhcC
Q 027424            1 MAHAHGALLLVDNSIM--SPVL--SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-------NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~--s~~~--~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-------~~~g   69 (223)
                      +|+++|+++|+|+...  ..+.  +.-...-.||++  +.|.++| +-- .|+++++ +++.+.+....       ...+
T Consensus       247 lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~t--~gK~lgg-G~P-i~av~g~-~~i~~~~~~~~~~~~~~~~~~~  321 (453)
T PRK07046        247 LTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFLV--VGKPIAG-GVP-CAVYGFS-AELAERAQAAKASAPPGHSGIG  321 (453)
T ss_pred             HHHHhCCEEEEEccccCccCCcchhHHhCCCcccee--ehhhhcC-CCc-ceeeeeh-HHHHHHHhhccccCCCCCceeC
Confidence            4899999999999863  1111  111122369886  6999997 334 4556554 45555443110       0112


Q ss_pred             CC--CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           70 SG--LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        70 ~~--~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      .+  -+|..+...+..|+.+..  -+++..+....+.+.|+    +++.+..|                  .|.|.++.|
T Consensus       322 ~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v------------------~g~G~~~~i  383 (453)
T PRK07046        322 TTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHV------------------TRVGARVEF  383 (453)
T ss_pred             CCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEE------------------EEeCcEEEE
Confidence            22  367666666666665522  13444444445544444    34432222                  467888888


Q ss_pred             Ee
Q 027424          142 LT  143 (223)
Q Consensus       142 ~~  143 (223)
                      .+
T Consensus       384 ~~  385 (453)
T PRK07046        384 QF  385 (453)
T ss_pred             EE
Confidence            76

>PLN02263 serine decarboxylase

Probab=94.57  E-value=0.56  Score=44.23  Aligned_cols=113  Identities=21%  Similarity=0.287  Sum_probs=72.3

Q ss_pred             CccccCC-----EEEEecCCCCCCC---cC--ccc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHH----HH
Q 027424            1 MAHAHGA-----LLLVDNSIMSPVL---SR--PLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY----FL   64 (223)
Q Consensus         1 ia~~~g~-----~lvVDnT~~s~~~---~~--pl~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~----~~   64 (223)
                      +|+++|+     ++=||.++|+.+.   ..  +++  .+||=+.-+.||++.-+  .-+|++..+.+.+ ..+.    ++
T Consensus       253 i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P--~~cgvll~R~~~~-~~~~~~~~Yl  329 (470)
T PLN02263        253 TLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCP--MPCGVQITRMEHI-NVLSSNVEYL  329 (470)
T ss_pred             HHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCC--cCEEEEEEehhhH-hhhccChHhh
Confidence            3566775     9999999977432   11  122  24898999999999844  5577777775432 2221    11


Q ss_pred             H----HhcCCC--CChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           65 Q----NAEGSG--LAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        65 ~----~~~g~~--~sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      .    ...|.-  ..+.-.|..++  |.+.+..++++..++|+.+++.|++.+ +..+.-|
T Consensus       330 ~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g-~~~~~~p  389 (470)
T PLN02263        330 ASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAG-ISAMLNE  389 (470)
T ss_pred             CCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEeCC
Confidence            0    111211  12345566555  556688999999999999999999885 4455545

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=94.16  E-value=1.1  Score=40.68  Aligned_cols=169  Identities=21%  Similarity=0.260  Sum_probs=101.3

Q ss_pred             CEEEEecCCCCCCCcCcccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHHHH----------HHhcCC--CCC
Q 027424            7 ALLLVDNSIMSPVLSRPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----------QNAEGS--GLA   73 (223)
Q Consensus         7 ~~lvVDnT~~s~~~~~pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~----------~~~~g~--~~s   73 (223)
                      .++|+|-|-  ..+-+|++. .-|++.-|.=|-+++-+   -++++.+++ +.+++...          ....|.  .+.
T Consensus       171 ~~~v~D~SS--~ilsr~iDvsk~dviyagaQKnlGpaG---ltvvIvr~~-~l~r~~~~~~P~if~y~~~~~~~s~yNTP  244 (365)
T COG1932         171 GLLVADASS--AILSRPIDVSKYDVIYAGAQKNLGPAG---LTVVIVRPD-LLERAESYTLPSIFDYLTHADNGSMYNTP  244 (365)
T ss_pred             ceEEEeccc--HHhcCCCChhHcceEEEehhhccCccc---eEEEEEcHH-HHhcccccCCchHhhchhhhccCCccCCc
Confidence            789999873  445566664 45899999999999765   356777764 33332211          111121  123


Q ss_pred             h-HhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           74 P-FDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        74 p-~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      | +.-|++.-.++-+      ..-.+|..++|+.|-+|+++++.......|.         .+     .---++|.+.+.
T Consensus       245 ptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~---------~R-----S~mnV~f~~~~~  310 (365)
T COG1932         245 PTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKA---------NR-----SRMNVTFTLVDA  310 (365)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccchh---------hc-----cceeEEEEcCcH
Confidence            3 5555655566654      3335777889999999999987533322221         11     123356777677


Q ss_pred             HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhc
Q 027424          147 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  220 (223)
Q Consensus       147 ~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al~~  220 (223)
                      +..+.|+..+.--.. ..+-|            |.           +..| +|.|++    +||++-|++-++.+.++
T Consensus       311 ~ld~~fv~eae~~gl-~~lkG------------hr-----------~vgG-mRasiynA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         311 ELDKGFVAEAEAAGL-IYLKG------------HR-----------SVGG-LRASIYNAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             HHHHHHHHHHHHcCC-ceecc------------cc-----------CCCc-eeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence            777788755432211 11111            11           1334 999998    88999998888776653

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=93.33  E-value=1.2  Score=41.72  Aligned_cols=140  Identities=19%  Similarity=0.251  Sum_probs=82.1

Q ss_pred             CccccCCEEEEecCCCCCCC--------cCcccCCCcEEEecccccccCCcccceeEE----------EecChhHH-HH-
Q 027424            1 MAHAHGALLLVDNSIMSPVL--------SRPLELGADIVMHSATKFIAGHSDVMAGVL----------AVKGERLA-KE-   60 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~--------~~pl~~GADivv~S~tK~l~G~~d~~~G~v----------~~~~~~~~-~~-   60 (223)
                      +|+++|++|=||.++++..+        .+-++ .||=+-.-.||.+.-|=|.-.=++          .+++..+. +. 
T Consensus       260 Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie-~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~  338 (511)
T KOG0628|consen  260 VCREEGLWLHVDAAYAGSAFICPEFRYLMRGIE-YADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQ  338 (511)
T ss_pred             hhhhcCEEEEeehhhccccccCHHHHHHhhcch-hhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhh
Confidence            58999999999999975432        23344 367666677777765544321111          11111110 00 


Q ss_pred             -----HHHHHHhcCCCCChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           61 -----LYFLQNAEGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        61 -----l~~~~~~~g~~~sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                           .+.++-.+|--.-..-.|..+|  |.+.+..+++++.+-|+..-+.+.+-|..+-+.-+                
T Consensus       339 ~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~----------------  402 (511)
T KOG0628|consen  339 GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKR----------------  402 (511)
T ss_pred             ccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeccc----------------
Confidence                 0001111111111234566665  66778888999988888888888887765443322                


Q ss_pred             CCCeeEEEEe-CCHHHHHHHHhhcCc
Q 027424          134 GAGSVLSFLT-GSLALSKHVVETTKY  158 (223)
Q Consensus       134 g~ggl~sf~~-~~~~~~~~f~~~l~l  158 (223)
                       .=||++|.+ ++.+.-++++++++.
T Consensus       403 -~lgLvcFRlk~~N~~ne~Ll~~in~  427 (511)
T KOG0628|consen  403 -ILGLVCFRLKGDNEINEALLNRLNS  427 (511)
T ss_pred             -ccceeEEeecCCcHHHHHHHHHHHh
Confidence             447999998 556667778877754

>PRK09275 aspartate aminotransferase; Provisional

Probab=93.23  E-value=1.6  Score=41.78  Aligned_cols=52  Identities=12%  Similarity=0.148  Sum_probs=34.0

Q ss_pred             cccCCEEEEecCCCCCCC-cCc-ccC--CCcEEEecccccccCCcccceeEEEecCh
Q 027424            3 HAHGALLLVDNSIMSPVL-SRP-LEL--GADIVMHSATKFIAGHSDVMAGVLAVKGE   55 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~~~-~~p-l~~--GADivv~S~tK~l~G~~d~~~G~v~~~~~   55 (223)
                      |+++++||+|++++.-.. +.+ +..  .--|+++|+||+++-.|-.+|.++ ++++
T Consensus       273 ~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~-~~~~  328 (527)
T PRK09275        273 KRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGVIA-LHED  328 (527)
T ss_pred             cCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhhhh-cCch
Confidence            356999999999864321 111 111  123999999999986677776644 5554

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=93.22  E-value=0.67  Score=43.16  Aligned_cols=105  Identities=27%  Similarity=0.306  Sum_probs=57.3

Q ss_pred             CccccCCEEEEecCC--CCCCCcCcccCCCcEEEecccccccC---CcccceeEEEecChhHHHH---------------
Q 027424            1 MAHAHGALLLVDNSI--MSPVLSRPLELGADIVMHSATKFIAG---HSDVMAGVLAVKGERLAKE---------------   60 (223)
Q Consensus         1 ia~~~g~~lvVDnT~--~s~~~~~pl~~GADivv~S~tK~l~G---~~d~~~G~v~~~~~~~~~~---------------   60 (223)
                      ++|++|+.+++ .+=  +=....+|=++||||||.+ +|.|+-   .|-=-+|.+.++.+ +.+.               
T Consensus       221 ~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~-l~r~lPGRiVG~t~D~~G~  297 (429)
T PF02347_consen  221 IAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVRED-LVRQLPGRIVGQTKDADGK  297 (429)
T ss_dssp             HHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GG-GGGGS-S-EEEEEEBCCCS
T ss_pred             HHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhh-hhhhCCCceeccccccccc
Confidence            47899999888 442  1234688999999999888 898872   22223677766543 2110               


Q ss_pred             ------H----HHHHHh--cCCCCCh-------HhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           61 ------L----YFLQNA--EGSGLAP-------FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        61 ------l----~~~~~~--~g~~~sp-------~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                            |    ..+++-  +....+.       -..|+.+.|=+-|..-.++...||..+++.|++.
T Consensus       298 ~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  298 RAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             CCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             ceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  0    011111  1111111       1244555555555666688889999999999987

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=93.07  E-value=2.5  Score=41.21  Aligned_cols=80  Identities=16%  Similarity=0.232  Sum_probs=52.8

Q ss_pred             CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-----------------hcCCCCC--hHhHHHHHhcH---
Q 027424           27 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-----------------AEGSGLA--PFDCWICLRGV---   84 (223)
Q Consensus        27 GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-----------------~~g~~~s--p~da~ll~~~l---   84 (223)
                      +||=++-..||++.-  ---+|+++.++.++.+.+.....                 ..|.-..  ....|+.+|.+   
T Consensus       373 ~ADSItvDpHK~g~~--Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G  450 (608)
T TIGR03811       373 EAESVTIDPHKMGYI--PYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLN  450 (608)
T ss_pred             CceEEEeCccccccc--CCCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcC
Confidence            799999999999763  34578888888765443321111                 0111111  34566666554   


Q ss_pred             -HHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           85 -KTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        85 -~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                       +-+...+++..++|+.+++.|+++
T Consensus       451 ~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       451 VTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             356778899999999999999985

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.91  E-value=0.28  Score=45.68  Aligned_cols=100  Identities=21%  Similarity=0.180  Sum_probs=71.3

Q ss_pred             ccccCCEEEEecCCCCCC------------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH--HHh
Q 027424            2 AHAHGALLLVDNSIMSPV------------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNA   67 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~------------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~--~~~   67 (223)
                      .+++.+.+.+|+++..+.            .++|-  -+||.+.-.||.++.    .||.+. .++++.+.++..  ...
T Consensus       302 kkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~--dvDImMGtftKSfga----~GGyia-gsk~lid~lrt~s~~~~  374 (519)
T KOG1357|consen  302 KKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPE--DVDIMMGTFTKSFGA----AGGYIA-GSKELIDYLRTPSPSAL  374 (519)
T ss_pred             hccccEEEEeeccccccccCCCCcceeeccCCCch--hheeecceehhhccc----ccceec-CcHHHHhhhccCCCcee
Confidence            467889999999974432            23333  478999999999985    367664 455665554432  234


Q ss_pred             cCCCCChHhHHHHHhcHHHH---------HHHHHHHHhHHHHHHHHHhcC
Q 027424           68 EGSGLAPFDCWICLRGVKTM---------ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        68 ~g~~~sp~da~ll~~~l~tl---------~~R~~~~~~na~~la~~L~~~  108 (223)
                      .+..+||--+...+.+++..         ..++++..+|.......|++.
T Consensus       375 yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~  424 (519)
T KOG1357|consen  375 YATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM  424 (519)
T ss_pred             ecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC
Confidence            56678888888888888885         466788888888887777654

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=92.81  E-value=3.2  Score=38.56  Aligned_cols=103  Identities=20%  Similarity=0.245  Sum_probs=67.8

Q ss_pred             CccccCCEEEEecCCCCCC--------CcC-cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC
Q 027424            1 MAHAHGALLLVDNSIMSPV--------LSR-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~--------~~~-pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g   69 (223)
                      +||++|+...+|+.++-++        .-+ -+-.-.||+...+-|.|+    .+||.+.... .+.+-++.+..  .+.
T Consensus       328 vah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafG----cVGGYIAat~-~LvDmiRSyAaGFIFT  402 (570)
T KOG1360|consen  328 VAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFG----CVGGYIAATR-KLVDMIRSYAAGFIFT  402 (570)
T ss_pred             HHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhcc----cccceehhhh-hHHHHHHHhcCceEEe
Confidence            4899999999999976443        222 233357899999999998    3799986544 56565555432  344


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHH--HHHHhHHHHHHHHHhcC
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRV--EKQQDNAQKIAEFLASH  108 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~--~~~~~na~~la~~L~~~  108 (223)
                      .++.|.--.-.+.+++-+   +.|.  ++|.+|...+.+.|...
T Consensus       403 TSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~  446 (570)
T KOG1360|consen  403 TSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL  446 (570)
T ss_pred             cCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            567774433344444444   2232  66788889998888765

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=90.64  E-value=0.8  Score=42.22  Aligned_cols=105  Identities=13%  Similarity=0.094  Sum_probs=64.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcc------c-CCC---cEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc-C
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPL------E-LGA---DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl------~-~GA---Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~-g   69 (223)
                      +|++||+++|.|+++.- +.+.+.      . -|+   -|.|.|+.|+++--|=.+||++ + ++.+...++..+... =
T Consensus       200 l~~k~~~lvisDevYe~-~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~i-g-p~~L~~~~~~vh~~~~~  276 (420)
T KOG0257|consen  200 LCKKHGLLVISDEVYEW-LVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAI-G-PKHLYSALFPVHQNFVF  276 (420)
T ss_pred             HHHHCCEEEEEhhHhHH-HhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeee-c-hHHhhhhHHHHhhcccc
Confidence            58899999999999632 111221      1 133   4889999999997666777755 4 666665555443322 1


Q ss_pred             CCCChH-hHHHHHhcH----------HHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           70 SGLAPF-DCWICLRGV----------KTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        70 ~~~sp~-da~ll~~~l----------~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      .+.+|. .+.....++          .....+.+...+|-..|++.|+.-
T Consensus       277 ~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l  326 (420)
T KOG0257|consen  277 TCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL  326 (420)
T ss_pred             ccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            234442 222222222          223345677888899999999875

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=90.61  E-value=2.7  Score=38.52  Aligned_cols=143  Identities=13%  Similarity=0.101  Sum_probs=76.6

Q ss_pred             cccCCEEEEecCC---CCCCCcC--cccC----CC-cEEEecccccccCCcccceeEEEecC-hhHHHH----HHHHHHh
Q 027424            3 HAHGALLLVDNSI---MSPVLSR--PLEL----GA-DIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKE----LYFLQNA   67 (223)
Q Consensus         3 ~~~g~~lvVDnT~---~s~~~~~--pl~~----GA-Divv~S~tK~l~G~~d~~~G~v~~~~-~~~~~~----l~~~~~~   67 (223)
                      +++|...++|-++   +.++..+  ++.+    +- =+|+.|++|-|+=.+..+|+..++.. ++...+    ++...+.
T Consensus       202 ~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~  281 (396)
T COG1448         202 KERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRT  281 (396)
T ss_pred             HHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHh
Confidence            5678889999885   3332211  1111    11 38999999999999999999665543 333332    3332222


Q ss_pred             cCCCCChHhHHHHHhcHHHHHHH----------HHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCe
Q 027424           68 EGSGLAPFDCWICLRGVKTMALR----------VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  137 (223)
Q Consensus        68 ~g~~~sp~da~ll~~~l~tl~~R----------~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~gg  137 (223)
                      .=+.....-+.++..-|++-.+|          .+|+.+-...+.+.|+++..=....           ..    ...-|
T Consensus       282 ~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~-----------~i----~~Q~G  346 (396)
T COG1448         282 NYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFD-----------FI----ISQRG  346 (396)
T ss_pred             ccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc-----------hH----hhcCc
Confidence            11111113344433333322211          2455555566777777642100111           11    12468


Q ss_pred             eEEEEeCCHHHHHHHHhhcCcce
Q 027424          138 VLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus       138 l~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      |||+.=-+++++.+.-+...+..
T Consensus       347 MFsy~Gls~~QV~rLree~~IY~  369 (396)
T COG1448         347 MFSYTGLSPEQVDRLREEFGIYL  369 (396)
T ss_pred             eeecCCCCHHHHHHHHHhccEEE
Confidence            98886337788888777777653

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=90.59  E-value=2.9  Score=42.73  Aligned_cols=51  Identities=37%  Similarity=0.569  Sum_probs=37.6

Q ss_pred             CccccCCEEEEecCCCC-CCCcCcccCCCcEEEeccccccc-----CCcccceeEEEecC
Q 027424            1 MAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSATKFIA-----GHSDVMAGVLAVKG   54 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-~~~~~pl~~GADivv~S~tK~l~-----G~~d~~~G~v~~~~   54 (223)
                      ++|++|++++|+.-..+ -...+|=++||||||.+.-++-.     |+.   +|.+.+++
T Consensus       218 ~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~---aG~~a~~~  274 (939)
T TIGR00461       218 ALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPH---AAFFAVKD  274 (939)
T ss_pred             HHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCc---eeeeeecH
Confidence            37899999999765433 34578999999999887766633     553   78787764

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=89.50  E-value=3.7  Score=37.25  Aligned_cols=177  Identities=17%  Similarity=0.225  Sum_probs=86.9

Q ss_pred             CCEEEEecCCCCCCCcCcccCCC--cEEEecccccccCCc-ccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHHHh
Q 027424            6 GALLLVDNSIMSPVLSRPLELGA--DIVMHSATKFIAGHS-DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR   82 (223)
Q Consensus         6 g~~lvVDnT~~s~~~~~pl~~GA--Divv~S~tK~l~G~~-d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll~~   82 (223)
                      +..+|-|=++==|. +.|+..-|  ||.+-+++|+- ||+ -.+||++ ++++++.+++..+.......+|-+.=-..++
T Consensus       162 ~~k~I~D~AYYWPh-yTpI~~~aD~DiMLFT~SK~T-GHAGSR~GWAl-VKD~~Va~kM~~y~~lnTiGvS~dsQLRa~k  238 (363)
T PF04864_consen  162 SGKVIHDLAYYWPH-YTPITAPADHDIMLFTLSKLT-GHAGSRFGWAL-VKDEEVAKKMTKYMELNTIGVSRDSQLRALK  238 (363)
T ss_dssp             EEEEEEE-TT-STT-TS---S-B--SEEEEEHHHHC-S-GGG-EEEEE-ES-HHHHHHHHHHHHHHCSS--HHHHHHHHH
T ss_pred             Ccceeeeeeeeccc-ccccCCCCCCceEEEEEeccc-Cccccccceee-ecCHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence            45678887742121 23444333  79999999986 464 5677766 6888888887665433332344432111222


Q ss_pred             cHHHHHH---------H-----HHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE-eC--C
Q 027424           83 GVKTMAL---------R-----VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TG--S  145 (223)
Q Consensus        83 ~l~tl~~---------R-----~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~-~~--~  145 (223)
                      -|+....         +     .+.+.+.-.+|.+-+++..   +...|.+  .|+|--..++....++-+.-. ..  +
T Consensus       239 iLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~---rFSLq~~--~~~yC~ff~~~~~psPafAWlkCe~ee  313 (363)
T PF04864_consen  239 ILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASK---RFSLQKF--SPQYCNFFKRVREPSPAFAWLKCEREE  313 (363)
T ss_dssp             HHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSS---SEEE-----SCEEETTTTCEEE---SEEEEEESSCG
T ss_pred             HHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC---ceecCcC--CchhccccccccCCCCCeEEEecCCcc
Confidence            2222211         1     1334455566767776653   3445544  244432222222233333332 22  3


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHH
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLD  215 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl--Ed~~dL~~dl~  215 (223)
                      .+++..|+.+.+++..+-                         ...|.+...+|||.--  +|.+.|++.|.
T Consensus       314 d~DC~~~l~~~~I~tr~G-------------------------~~fga~~ryVRlSml~~~d~Fd~l~~rL~  360 (363)
T PF04864_consen  314 DEDCYAVLREAKIITRSG-------------------------VLFGADSRYVRLSMLKRDDDFDQLLERLS  360 (363)
T ss_dssp             GSSHHHHHHCTTEEEEEG-------------------------GGGTS-TTEEEEESSS-HHHHHHHHHHHH
T ss_pred             cccHHHHHHhCCcccCCC-------------------------CccCCCCCeEEEeccCCHHHHHHHHHHHH
Confidence            457899999999885421                         1245677889999763  23555665543

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=89.22  E-value=1  Score=42.48  Aligned_cols=100  Identities=13%  Similarity=0.154  Sum_probs=54.7

Q ss_pred             CccccCCEEEEecCCCCCCCc------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-HHhcCCC--
Q 027424            1 MAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAEGSG--   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-~~~~g~~--   71 (223)
                      +|+++|+++|+|+.. +++-.      .-+..-.||+  .+.|.++|. --+|+ ++++ +++.+.+... ....+.+  
T Consensus       275 lc~~~g~lLI~DEV~-tGfR~g~~ga~~~~gv~PDi~--t~gK~lggG-~Piga-v~g~-~ei~~~~~~~~~~~~~~T~~  348 (474)
T PLN02482        275 ITKENGALLVFDEVM-TGFRIAYGGAQEYFGITPDLT--TLGKVIGGG-LPVGA-YGGR-REIMEMVAPAGPMYQAGTLS  348 (474)
T ss_pred             HHHHcCCEEEEeccc-cCeecCcchHhHHhCCCCCEE--EecchhhCC-CceEE-EEEc-HHHHHhhccCCCcccccCcc
Confidence            488999999999997 44311      1111235775  558999863 44555 4444 4565544211 0112222  


Q ss_pred             CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh
Q 027424           72 LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA  106 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~  106 (223)
                      -+|..+...+..|+.+..  ..++..+....+.+.|+
T Consensus       349 gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~  385 (474)
T PLN02482        349 GNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGIL  385 (474)
T ss_pred             hhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            256666556666665532  33555555555555554

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=88.90  E-value=1.1  Score=41.55  Aligned_cols=100  Identities=15%  Similarity=0.157  Sum_probs=54.5

Q ss_pred             CccccCCEEEEecCCCCCCCcC------cccCCCcEEEecccccccCCcccceeEEEecChhHHHH--HHHH--HH--hc
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE--LYFL--QN--AE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~--l~~~--~~--~~   68 (223)
                      +|+++|+++|+|+.+ +++...      -+..-.||+  .+.|.++| + ..+|+++++ +++.+.  +...  ..  ..
T Consensus       212 lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi~--t~gK~lgg-G-~p~~av~~~-~~i~~~~~~~~~~~~~~~~~  285 (431)
T PRK06209        212 LCHENGALFILDEMI-TGFRWHMRGAQKLYGIVPDLS--CFGKALGN-G-FAVSALAGK-REYMELGGLEHTDRERVFLL  285 (431)
T ss_pred             HHHHcCCEEEEEccc-ccCCcCcchhhHHhCCCccee--eehhhhcC-C-cccEEEEEH-HHHHhhhcccccCCCCceee
Confidence            478999999999986 443221      111225764  46899997 3 345666554 445432  1100  01  12


Q ss_pred             CCCC--ChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh
Q 027424           69 GSGL--APFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA  106 (223)
Q Consensus        69 g~~~--sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~  106 (223)
                      +.+.  +|..+...+..|+.+..  ..++..++...+.+.|+
T Consensus       286 ~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~  327 (431)
T PRK06209        286 STTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVN  327 (431)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            3343  34667777777776632  23444455555555444

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=88.08  E-value=0.34  Score=44.43  Aligned_cols=58  Identities=16%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             CccccCCEEEEecCCCC------CCCcCcccCC-CcEEEecccccccCCccccee-EEEecChhHHHHH
Q 027424            1 MAHAHGALLLVDNSIMS------PVLSRPLELG-ADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------~~~~~pl~~G-ADivv~S~tK~l~G~~d~~~G-~v~~~~~~~~~~l   61 (223)
                      |||++|+|.||-|+++-      ...+++.+.| .|++++|+-|-|-=+   .|| ++...++.....+
T Consensus       180 iC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VP---vGgai~As~~~~~i~~v  245 (389)
T PF05889_consen  180 ICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVP---VGGAIMASFDPSGILAV  245 (389)
T ss_dssp             HHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEE---SSHEEEEESSHHHHHHH
T ss_pred             HHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEec---CCCcEEEecCHHHHHHH
Confidence            58999999999999964      1233455555 699999999987633   244 4444444444433

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=88.02  E-value=2.3  Score=39.17  Aligned_cols=115  Identities=26%  Similarity=0.384  Sum_probs=68.5

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc-CC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHH---HhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~-~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~---~~~g~   70 (223)
                      +++++|.+.|.|+.- |++.    +..++ +|  .|||  ++.|.+++ +.-++++| .. +++...+....   +.+| 
T Consensus       241 ~v~k~Ggl~IaDEVq-tGfGRtG~~wgfe~h~v~PDIv--TmAKgiGn-G~Pl~AVv-tt-~EIa~v~~~~~~~fnTyg-  313 (442)
T KOG1404|consen  241 VVRKRGGLFIADEVQ-TGFGRTGHMWGFESHGVVPDIV--TMAKGIGN-GFPLGAVV-TT-PEIADVLNQKSSHFNTYG-  313 (442)
T ss_pred             HHHHcCCEEEehhhh-hccccccccccccccCCCccHH--HHHhhccC-CCcceeee-cC-HHHHHHHHhccccccccC-
Confidence            368899999999984 2211    11122 23  3655  78899985 35565544 44 46665544322   2233 


Q ss_pred             CCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHh--------cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           71 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA--------SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        71 ~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~--------~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                       -.|..|..-+.-|+-+  +-++..+|+..+..+|.        +||-|-.|                  +|-|-|+-+|
T Consensus       314 -gnP~a~avg~aVL~Vi--kee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdV------------------RG~GLm~GvE  372 (442)
T KOG1404|consen  314 -GNPVACAVGLAVLKVI--KEENLQENAAEVGSYLLEKLAALKDKHPIIGDV------------------RGRGLMLGVE  372 (442)
T ss_pred             -CCchhHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhcCCceeec------------------ccceeEEEEE
Confidence             2565565554444433  33667778877777766        45655554                  4678888898


Q ss_pred             e
Q 027424          143 T  143 (223)
Q Consensus       143 ~  143 (223)
                      +
T Consensus       373 ~  373 (442)
T KOG1404|consen  373 L  373 (442)
T ss_pred             E
Confidence            7

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=87.92  E-value=1.3  Score=40.51  Aligned_cols=144  Identities=17%  Similarity=0.285  Sum_probs=79.8

Q ss_pred             CccccCCEEEEecCCC----CC-CC---cCcccCCCcEEEecccccccCCcccceeEEEecChhHH--HHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIM----SP-VL---SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA--KELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~----s~-~~---~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~--~~l~~~~~~~g~   70 (223)
                      |+++||+..|||+.-.    |+ +.   ..-|+.-+|+|.-| -|...      ||..+  ++++.  +.-+.+..-+| 
T Consensus       300 i~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFS-KK~q~------gGffh--~~~frpn~pYrifNTWmG-  369 (484)
T KOG1405|consen  300 ITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFS-KKFQT------GGFFH--DEEFRPNEPYRIFNTWMG-  369 (484)
T ss_pred             HHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehh-hhhhc------Ccccc--CcccCCCchHHHhhhhcC-
Confidence            4689999999999721    11 11   22344458998766 24433      56554  22332  11122223334 


Q ss_pred             CCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHH
Q 027424           71 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK  150 (223)
Q Consensus        71 ~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~  150 (223)
                        .|.-..++..-++-.  .-+...+|+..+-++|.+-=.-.+-.||+.         ..+.+|-|..+++++.+...-.
T Consensus       370 --dP~k~lll~~vv~~I--~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~---------~~~~RGrGTF~a~d~ps~~~Rd  436 (484)
T KOG1405|consen  370 --DPSKNLLLEEVVQEI--KREDLLNNVAHVGKALLKGLLELQAKYPGK---------INNLRGRGTFIAWDCPSGSIRD  436 (484)
T ss_pred             --ChHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHhCchh---------hhcccccceEEEEeCCChHHHH
Confidence              564444433333322  225556666666666654211112235543         1235788999999997666667


Q ss_pred             HHHhhcCcceeccccCCCC
Q 027424          151 HVVETTKYFSITVSFGSVK  169 (223)
Q Consensus       151 ~f~~~l~l~~~~~s~G~~~  169 (223)
                      +|+..+++  .|+++||+.
T Consensus       437 k~i~~~~~--nGv~~GGCg  453 (484)
T KOG1405|consen  437 KLILIARL--NGVNLGGCG  453 (484)
T ss_pred             HHHHHHHH--cCceecccc
Confidence            88888776  588999753

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=87.16  E-value=1.8  Score=40.15  Aligned_cols=50  Identities=46%  Similarity=0.681  Sum_probs=35.2

Q ss_pred             ccccCCEEEEecC-CCCCCCcCcccCCCcEEEeccccc-----ccCCcccceeEEEecC
Q 027424            2 AHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKG   54 (223)
Q Consensus         2 a~~~g~~lvVDnT-~~s~~~~~pl~~GADivv~S~tK~-----l~G~~d~~~G~v~~~~   54 (223)
                      +|++|++++|=.= .+=.++..|-++||||||-|.--+     |||+   -+|...+++
T Consensus       236 ~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGP---hag~fA~~~  291 (450)
T COG0403         236 AHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGP---HAGYFAVKD  291 (450)
T ss_pred             HhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCc---ceeeeeEhH
Confidence            6888887776432 222356778999999999998876     4555   467776654

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=85.75  E-value=1.9  Score=40.19  Aligned_cols=123  Identities=19%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-hcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-~~g~~~sp   74 (223)
                      +||++|++||.|+.+...-     .|.-.-.-+|+++  +-|.++|.  .=.|++ ....++.+.+.-... +.+.++|.
T Consensus       229 lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDltt--lGKiIGGG--lP~ga~-gGr~eiM~~~~p~g~vyqaGT~sg  303 (432)
T COG0001         229 LTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTT--LGKIIGGG--LPIGAF-GGRAEIMEQLAPLGPVYQAGTLSG  303 (432)
T ss_pred             HHHHcCcEEEEecchhhcccCCcccccccCcCcchhh--hhhhhcCC--cceeee-ccHHHHHhhhCCCCCccccCCCCC
Confidence            5789999999999973210     1222222357765  67999863  334555 344566554432221 22223332


Q ss_pred             HhHHHHHhcHHHH---HH---HHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           75 FDCWICLRGVKTM---AL---RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        75 ~da~ll~~~l~tl---~~---R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      . ---+..++.++   ..   -+++..+.+.+|++-|++.-.  +-.-|   -         ..++.|+|++|.+
T Consensus       304 n-plamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~--~~g~~---~---------~v~~~gsm~~i~F  363 (432)
T COG0001         304 N-PLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAE--RHGIP---L---------TVNRVGSMFGIFF  363 (432)
T ss_pred             c-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH--HhCCC---e---------EEeeecceEEEEe
Confidence            1 12234444444   32   256777777777777765311  00000   0         0235789999987

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=84.94  E-value=1.3  Score=41.19  Aligned_cols=113  Identities=17%  Similarity=0.242  Sum_probs=76.1

Q ss_pred             CccccCCEEEEecCCCCCCCcC--------cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHH------HHH-
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY------FLQ-   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~--------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~------~~~-   65 (223)
                      +|.+|++++=||.+|+.+++.+        -++ -||=|.-+-||.++  .-.++++.+.+.+.+..+..      ..+ 
T Consensus       278 iC~k~~lWmHvDAAwGGglLmS~k~R~kl~Gie-ra~SvtwnpHK~~g--aplqCsa~l~r~~gll~~Cn~~~A~YLFq~  354 (510)
T KOG0629|consen  278 ICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIE-RANSVTWNPHKLMG--APLQCSAFLTREEGLLQRCNQMSAIYLFQQ  354 (510)
T ss_pred             HHHhcCEEEEeecccccccccChhhHhhccCcc-ccCceeecHHHhhc--CcchhhHHHHHHHHHHHhhcccchhhhhcc
Confidence            4788999999999999865422        233 37888889999998  55677766655544322211      010 


Q ss_pred             --------------HhcCCCCChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEc
Q 027424           66 --------------NAEGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY  116 (223)
Q Consensus        66 --------------~~~g~~~sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~y  116 (223)
                                    ..-|-...-|--|++.+  |-+-++.++++..++|+.+-+.|++.+....|+-
T Consensus       355 dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~  421 (510)
T KOG0629|consen  355 DKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFE  421 (510)
T ss_pred             CceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhc
Confidence                          01233455577787766  4445788899999999999999998876544443

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=82.16  E-value=8.7  Score=35.71  Aligned_cols=82  Identities=15%  Similarity=0.145  Sum_probs=53.2

Q ss_pred             ccccCCEEEEecCCCCCCCcCc-----ccC------CCc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc
Q 027424            2 AHAHGALLLVDNSIMSPVLSRP-----LEL------GAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE   68 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~p-----l~~------GAD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~   68 (223)
                      |.++++-||+|+-++..++-.+     ++.      --|  -+|.|++|=+|-+|... |+|..+++.+......+. .+
T Consensus       255 a~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRv-GviYS~ne~VvsaA~kms-sf  332 (471)
T KOG0256|consen  255 ASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRV-GVIYSNNEDVVSAATKMS-SF  332 (471)
T ss_pred             HhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEE-EEEEecChHHHHHHHHHh-hc
Confidence            5678999999999876544221     111      111  58999999999888887 678888877765444333 34


Q ss_pred             CCCCChHhHHHHHhcHHH
Q 027424           69 GSGLAPFDCWICLRGVKT   86 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~t   86 (223)
                      | .+|++.-+++..=|.+
T Consensus       333 ~-~vSs~tQ~~la~LLSD  349 (471)
T KOG0256|consen  333 G-LVSSQTQYLLASLLSD  349 (471)
T ss_pred             c-CCcHHHHHHHHHHhch
Confidence            4 3577666665554443

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=81.98  E-value=46  Score=31.28  Aligned_cols=55  Identities=25%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             CccccCCEEEEecCCC----C----------CCCc--------CcccCCCc-----EEEecccccccCCcccceeEEEec
Q 027424            1 MAHAHGALLLVDNSIM----S----------PVLS--------RPLELGAD-----IVMHSATKFIAGHSDVMAGVLAVK   53 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~----s----------~~~~--------~pl~~GAD-----ivv~S~tK~l~G~~d~~~G~v~~~   53 (223)
                      +|++|++++|.|+-+.    .          |..-        -|--++.|     |-..|.+|.++ +|..+|+ +.++
T Consensus       232 LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~-it~~  309 (472)
T KOG0634|consen  232 LARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGW-ITGN  309 (472)
T ss_pred             HHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEE-eecC
Confidence            5899999999999841    1          1100        01112333     88899999997 6777765 6566


Q ss_pred             ChhH
Q 027424           54 GERL   57 (223)
Q Consensus        54 ~~~~   57 (223)
                      +..+
T Consensus       310 ~~~l  313 (472)
T KOG0634|consen  310 SLFL  313 (472)
T ss_pred             HHHH
Confidence            5444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
1ibj_A	464	Crystal Structure Of Cystathionine Beta-Lyase From		1e-115
1pff_A	331	Crystal Structure Of Homocysteine Alpha-, Gamma-Lya		1e-52
3e6g_A	400	Crystal Structure Of Xometc, A Cystathionine C-Lyas		8e-52
1n8p_A	393	Crystal Structure Of Cystathionine Gamma-lyase From		2e-51
3mkj_A	398	Methionine Gamma-Lyase From Citrobacter Freundii Wi		3e-50
2rfv_A	398	High Resolution Structure Of L-Methionine Gamma-Lya		2e-49
3jwa_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-49
1y4i_A	398	Crystal Structure Of Citrobacter Freundii L-Methion		2e-49
3jw9_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-49
3qhx_A	392	Crystal Structure Of Cystathionine Gamma-Synthase M		4e-48
3aej_A	389	Reaction Intermediate Structure Of Entamoeba Histol		6e-48
3acz_A	389	Crystal Structure Of Entamoeba Histolytica Methioni		2e-47
1e5e_A	404	Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin		7e-47
2nmp_A	403	Crystal Structure Of Human Cystathionine Gamma Lyas		4e-46
3elp_B	410	Structure Of Cystationine Gamma Lyase Length = 410		5e-46
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		4e-45
1pg8_A	398	Crystal Structure Of L-Methionine Alpha-, Gamma-Lya		5e-44
3vk2_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-43
1gc0_A	398	Crystal Structure Of The Pyridoxal-5'-Phosphate Dep		2e-43
1qgn_A	445	Cystathionine Gamma-Synthase From Nicotiana Tabacum		2e-39
3ndn_A	414	Crystal Structure Of O-Succinylhomoserine Sulfhydry		2e-38
2ctz_A	421	Crystal Structure Of O-Acetyl Homoserine Sulfhydryl		9e-31
2cb1_A	412	Crystal Structure Of O-Actetyl Homoserine Sulfhydry		1e-25
1cl2_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		4e-25
2fq6_A	415	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		4e-25
1cl1_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		2e-24
3ri6_A	430	A Novel Mechanism Of Sulfur Transfer Catalyzed By O		9e-22

>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464

Iteration: 1
 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/223 (86%), Positives = 212/223 (95%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE
Sbjct: 242 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE 301
Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP
Sbjct: 302 VYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLP 361
Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSH
Sbjct: 362 DHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 421
Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           ASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD A +T PL
Sbjct: 422 ASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 464

>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331

Iteration: 1
 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/212 (46%), Positives = 147/212 (69%), Gaps = 1/212 (0%)
Query: 8   LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 66
           L++VDN+  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK +   +++
Sbjct: 116 LVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKD 175
Query: 67  AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
             G+ ++P D W+  RG  T+ +RV++  +NAQK+AEFL  H  VKKV Y GLP+HPGHE
Sbjct: 176 ITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHE 235
Query: 127 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE 186
           +   Q K  GS+++F    L  +K V++     S+ VS G  +SLI  P  M+HA +P E
Sbjct: 236 IAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKE 295
Query: 187 VRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
            R+A GLT++L+R+SVG E+V D+I DL +AL
Sbjct: 296 EREAAGLTDNLIRLSVGCENVQDIIDDLKQAL 327

>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400

Iteration: 1
 Score =  199 bits (507), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 149/221 (67%), Gaps = 4/221 (1%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER--LA 58
           +A  HG L +VDN+  SP+L RPL LGAD+V+HSATK++ GHSD++ G+ AV G+   LA
Sbjct: 177 IARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGI-AVVGDNAELA 235
Query: 59  KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
           +++ FLQN+ G    PFD ++ LRG+KT+ LR+    +NA  +A++L +HP ++KV Y G
Sbjct: 236 EQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPG 295
Query: 119 LPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
           L  HP H L   Q  G G ++S  L G    +K   E T+ F++  S G V+SL++ P  
Sbjct: 296 LASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAV 355
Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           M+HASIPV  R+  G+++ LVR+SVGIED+ DL  DL++AL
Sbjct: 356 MTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERAL 396

>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393

Iteration: 1
 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/223 (46%), Positives = 147/223 (65%), Gaps = 6/223 (2%)
Query: 3   HAHG--ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           HA G   +L+VDN+ +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + 
Sbjct: 167 HAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYER 226
Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGL 119
           L FLQNA G+  +PFD W+  RG+KT+ LRV +   +A KIAEFLA+    V  VNY GL
Sbjct: 227 LQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGL 286
Query: 120 PEHPGHELHYSQAKGA--GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC 176
             HP +++   Q + A  G ++SF + G    +     +T+ F++  S G ++SL+ +P 
Sbjct: 287 KTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPA 346
Query: 177 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
            M+H  IP E R+A G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 347 VMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALK 389

>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398

Iteration: 1
 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/221 (42%), Positives = 143/221 (64%), Gaps = 2/221 (0%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH  GALL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + + 
Sbjct: 174 IAHQQGALLVVDNTFMSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQA 233
Query: 61  LYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
            +  L++  G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL
Sbjct: 234 RFVGLKDITGGXMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 293
Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
             HP +EL   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M
Sbjct: 294 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           +H+ +  E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/221 (41%), Positives = 142/221 (64%), Gaps = 2/221 (0%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH  GALL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + + 
Sbjct: 174 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQA 233
Query: 61  LYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
            +  L++  G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL
Sbjct: 234 RFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 293
Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
             HP +EL   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M
Sbjct: 294 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           +H+ +  E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/221 (41%), Positives = 142/221 (64%), Gaps = 2/221 (0%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH  GALL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + + 
Sbjct: 174 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQA 233
Query: 61  LYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
            +  L++  G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL
Sbjct: 234 RFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 293
Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
             HP +EL   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M
Sbjct: 294 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           +H+ +  E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/221 (41%), Positives = 142/221 (64%), Gaps = 2/221 (0%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH  GALL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + + 
Sbjct: 174 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQA 233
Query: 61  LYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
            +  L++  G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL
Sbjct: 234 RFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 293
Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
             HP +EL   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M
Sbjct: 294 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           +H+ +  E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/221 (41%), Positives = 142/221 (64%), Gaps = 2/221 (0%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH  GALL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + + 
Sbjct: 174 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQA 233
Query: 61  LYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
            +  L++  G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL
Sbjct: 234 RFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 293
Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
             HP +EL   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M
Sbjct: 294 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           +H+ +  E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 132/213 (61%), Gaps = 4/213 (1%)
Query: 7   ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 66
           A +LVDN+  SP L +PL LGAD+V+HS T +I GHSDV+ G L    E L +   FLQN
Sbjct: 182 AKVLVDNTFASPALQQPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQN 241
Query: 67  AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
             G+   PFD ++ +RG+KT+ LR+++  +NA  +AEFLA HP +  V Y GLP HPGH 
Sbjct: 242 GAGAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHA 301
Query: 127 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 185
           +   Q +G G ++S  +      ++ +   T  F +  S GSV+SLI  P  M+HAS   
Sbjct: 302 VAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAG 361
Query: 186 EVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
              +   + +DLVR+SVGIEDV DL+ DL +AL
Sbjct: 362 SQLE---VPDDLVRLSVGIEDVADLLDDLKQAL 391

>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389

Iteration: 1
 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 137/219 (62%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           + H  GA L+VD +  SP   +PLELGADI +HS +K+I GH DV+ GV + K       
Sbjct: 169 VCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIAT 228
Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + F +   GS +AP D ++C RG+KT+ +R++   +N  K+A+FL  H ++ KVN+ GL 
Sbjct: 229 IKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLE 288
Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
             PGH++   Q  G GS   F   S   +K ++E  K  ++ VS G V +LI  P  M+H
Sbjct: 289 SFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTH 348
Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           A++P  + + +G+T +LVRISVGIE+V+D+I+DL +AL 
Sbjct: 349 AAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE 387

>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 136/219 (62%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           + H  GA L+VD +  SP   +PLELGADI +HS + +I GH DV+ GV + K       
Sbjct: 169 VCHERGARLVVDATFTSPCFLKPLELGADIALHSVSXYINGHGDVIGGVSSAKTAEDIAT 228
Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + F +   GS +AP D ++C RG+KT+ +R++   +N  K+A+FL  H ++ KVN+ GL 
Sbjct: 229 IKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLE 288
Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
             PGH++   Q  G GS   F   S   +K ++E  K  ++ VS G V +LI  P  M+H
Sbjct: 289 SFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTH 348
Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           A++P  + + +G+T +LVRISVGIE+V+D+I+DL +AL 
Sbjct: 349 AAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE 387

>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404

Iteration: 1
 Score =  183 bits (464), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 86/220 (39%), Positives = 148/220 (67%), Gaps = 3/220 (1%)
Query: 2   AHAH-GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK- 59
           AH+  G L++ DN+  SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L + 
Sbjct: 173 AHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQI 232
Query: 60  ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
            +  +++  GS ++P D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G 
Sbjct: 233 RMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGF 292
Query: 120 PEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
            +H GH++   Q +  GS+++F+  S    +K +++  K  ++ VS G  +SLI  P  M
Sbjct: 293 EDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASM 352
Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           +HA +P E R+A G+T+ ++R+SVGIED ++LI+D  + L
Sbjct: 353 THAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGL 392

>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 133/205 (64%), Gaps = 2/205 (0%)
Query: 1   MAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 59
           + H HG ++LV DN+ MSP   RPL LGADI M+SATK++ GHSDV+ G+++V  E L  
Sbjct: 176 IVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHN 235
Query: 60  ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
            L FLQN+ G+  +P DC++C RG+KT+ +R+EK   N   +A+FL S+P V+KV Y GL
Sbjct: 236 RLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGL 295
Query: 120 PEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
           P HP HEL   Q  G  G V  ++ G+L  ++  ++  K F++  S G  +SL  +P  M
Sbjct: 296 PSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIM 355
Query: 179 SHASIPVEVRQARGLTEDLVRISVG 203
           +HAS+    R   G+++ L+R+SVG
Sbjct: 356 THASVLKNDRDVLGISDTLIRLSVG 380

>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410

Iteration: 1
 Score =  180 bits (457), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 133/205 (64%), Gaps = 2/205 (0%)
Query: 1   MAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 59
           + H HG ++LV DN+ MSP   RPL LGADI M+SATK++ GHSDV+ G+++V  E L  
Sbjct: 180 IVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHN 239
Query: 60  ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
            L FLQN+ G+  +P DC++C RG+KT+ +R+EK   N   +A+FL S+P V+KV Y GL
Sbjct: 240 RLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGL 299
Query: 120 PEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
           P HP HEL   Q  G  G V  ++ G+L  ++  ++  K F++  S G  +SL  +P  M
Sbjct: 300 PSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIM 359
Query: 179 SHASIPVEVRQARGLTEDLVRISVG 203
           +HAS+    R   G+++ L+R+SVG
Sbjct: 360 THASVLKNDRDVLGISDTLIRLSVG 384

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 1/220 (0%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A   GA+ +VDN+ +SP L  PL LGAD+V+HS T ++ GHSDV+AGV+  K   +  E
Sbjct: 162 LAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTXYLNGHSDVVAGVVIAKDPDVVTE 221
Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           L +  N  G     FD ++ LRG++T+  R+E  Q NAQ I ++L + P VKK+ +  LP
Sbjct: 222 LAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLP 281
Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
           E+ GHE+   Q KG G++LSF L G     +  +     F++  S G V+SLIS    M+
Sbjct: 282 ENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMT 341
Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           HA +  E R A G++E L+RIS GIED  DLI+DL+   R
Sbjct: 342 HAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFR 381

>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398

Iteration: 1
 Score =  174 bits (440), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/222 (40%), Positives = 142/222 (63%), Gaps = 4/222 (1%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A  HGA ++VDN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++ V  + L   
Sbjct: 175 IARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIV-VGSQALVDR 233
Query: 61  LYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
           +    L++  G+ L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y G
Sbjct: 234 IRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPG 293
Query: 119 LPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
           L   P + L   Q    G +++F L G +   +  +   + FS  VS G  +SL   P  
Sbjct: 294 LASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPAS 353
Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           M+H+S   E R   G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 354 MTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 141/222 (63%), Gaps = 4/222 (1%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A  HGA ++VDN+  +P L RPLELGAD+V+HSAT +++GH D+ AG++ V  + L   
Sbjct: 175 IARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDR 233
Query: 61  LYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
           +    L++  G+ L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y G
Sbjct: 234 IRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPG 293
Query: 119 LPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
           L   P + L   Q    G +++F L G +   +  +   + FS  VS G  +SL   P  
Sbjct: 294 LASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPAS 353
Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           M+H+S   E R   G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 354 MTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 141/222 (63%), Gaps = 4/222 (1%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A  HGA ++VDN+  +P L RPLELGAD+V+HSAT +++GH D+ AG++ V  + L   
Sbjct: 175 IARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDR 233
Query: 61  LYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 118
           +    L++  G+ L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y G
Sbjct: 234 IRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPG 293
Query: 119 LPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
           L   P + L   Q    G +++F L G +   +  +   + FS  VS G  +SL   P  
Sbjct: 294 LASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPAS 353
Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           M+H+S   E R   G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 354 MTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 130/219 (59%), Gaps = 2/219 (0%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           + H  GAL+ +D +  +P+  + L LGAD+V+HSATKF+ GH+DV+AG ++    +L  E
Sbjct: 225 LCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCIS-GPLKLVSE 283
Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +  L +  G  L P   ++ +RG+KT+ LRV++Q   A ++AE L +HP+V+ V Y GL 
Sbjct: 284 IRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQ 343
Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
            HP H +   Q  G G  +SF + G L  +   V+  K   I  SFG  +S++  P  MS
Sbjct: 344 SHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMS 403
Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           +  +    R   G+ ++LVR S G+ED +DL +D+ +AL
Sbjct: 404 YWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQAL 442

>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 133/223 (59%), Gaps = 5/223 (2%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AHA GA +++DN   +P+L +   LG D+V++S T  I G   V+ G +    E +   
Sbjct: 191 LAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGRVLGGAILGDREYIDGP 250
Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +  L    G  ++ F+ W+ L+G++T+A+RV+    +AQ+IAEFL  HP V+ V Y  LP
Sbjct: 251 VQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLP 310
Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKH----VVETTKYFSITVSFGSVKSLISMP 175
            HP ++L   Q  G G+V++F L     ++K     V++  +   I+ + G  KSL++ P
Sbjct: 311 SHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHP 370
Query: 176 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
              +H ++  E R A GL + +VRISVG+ED +DLI+D+D+AL
Sbjct: 371 ATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413

>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 126/251 (50%), Gaps = 34/251 (13%)
Query: 2   AHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL---------- 50
           A   G  L+VDN+  M   L RPL  GA +V HS TK++ GH  V+AG +          
Sbjct: 170 AREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEG 229
Query: 51  -----------AVKGERLAK---ELYFLQNA-------EGSGLAPFDCWICLRGVKTMAL 89
                         G RL +   EL F+  A       +G  L PF+ W+ L G++T++L
Sbjct: 230 GRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSL 289
Query: 90  RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG-AGSVLSF-LTGSLA 147
           R E+  +N   +A +L   P+V  VNY GLP HP H+      KG  G+VL+F L G   
Sbjct: 290 RAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYE 349
Query: 148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV 207
            +K  +   K  S   + G  ++L   P   +H+ +  E +   G++ ++VR+SVG+E V
Sbjct: 350 AAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHV 409
Query: 208 NDLISDLDKAL 218
            DL ++L +AL
Sbjct: 410 EDLKAELKEAL 420

>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 29/246 (11%)
Query: 1   MAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAG-VLAVKGERLA 58
           +A   G  L+VDN+   +  L RPL  GA +V+ S T + +GH  V+ G VL+ + E   
Sbjct: 165 LAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTXWASGHGSVLGGAVLSRETELWR 224
Query: 59  KELYFLQ--------------------------NAEGSGLAPFDCWICLRGVKTMALRVE 92
               FLQ                          +  G  L+PF+ ++  +G++T+ALRV 
Sbjct: 225 NYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVA 284
Query: 93  KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV 152
           +  + A+ +AE L  HP+VK + Y GLPE P H          G +L+   G L  +   
Sbjct: 285 RMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASRF 344
Query: 153 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 212
           +   +      + G  ++L+  P   +H+ +  E R   G+T  LVR+SVG+ED  DL++
Sbjct: 345 LGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLA 403
Query: 213 DLDKAL 218
             ++AL
Sbjct: 404 LFEEAL 409

>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 118/217 (54%), Gaps = 16/217 (7%)
Query: 7   ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 66
           A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R  ++L     
Sbjct: 180 AIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAY 238
Query: 67  AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
             G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE
Sbjct: 239 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 298
Query: 127 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 183
                  G+  + SF+      ++ +   ++    FS+  S+G  +SLI        A+ 
Sbjct: 299 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 351
Query: 184 PVEVRQARGLTE-----DLVRISVGIEDVNDLISDLD 215
           P  +   R   E      L+R+ +G+EDV+DLI+DLD
Sbjct: 352 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388

>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 118/217 (54%), Gaps = 16/217 (7%)
Query: 7   ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 66
           A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R  ++L     
Sbjct: 200 AIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAY 258
Query: 67  AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
             G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE
Sbjct: 259 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 318
Query: 127 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 183
                  G+  + SF+      ++ +   ++    FS+  S+G  +SLI        A+ 
Sbjct: 319 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 371
Query: 184 PVEVRQARGLTE-----DLVRISVGIEDVNDLISDLD 215
           P  +   R   E      L+R+ +G+EDV+DLI+DLD
Sbjct: 372 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 408

>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 117/217 (53%), Gaps = 16/217 (7%)
Query: 7   ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 66
           A++++DN+  + VL + L+ G D+ + +AT ++ GHSD M G  AV   R  ++L     
Sbjct: 180 AIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGT-AVCNARCWEQLRENAY 238
Query: 67  AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 126
             G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE
Sbjct: 239 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 298
Query: 127 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 183
                  G+  + SF+      ++ +   ++    FS+  S+G  +SLI        A+ 
Sbjct: 299 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 351
Query: 184 PVEVRQARGLTE-----DLVRISVGIEDVNDLISDLD 215
           P  +   R   E      L+R+ +G+EDV+DLI+DLD
Sbjct: 352 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388

>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 120/238 (50%), Gaps = 20/238 (8%)
Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           + HA G  L+VD ++  P L     LG DI + S+TKFI+G    + GVL   G    K 
Sbjct: 192 VVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKS 251
Query: 61  L-------------YFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 100
           L              FL  A        G  L+P + ++   G++TMALR+E+   NAQ+
Sbjct: 252 LPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQE 311
Query: 101 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 160
           +A +L S P+VK VN+  LP+ P + +   Q + AGS+L+F   S   S   ++  K   
Sbjct: 312 LAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIR 371
Query: 161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
              +    KSLI  P  + +A    E R    ++  ++R+SVGIE++ DL  D+ +AL
Sbjct: 372 RATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	1e-136
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	1e-123
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	1e-120
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	1e-120
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	1e-119
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	1e-117
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	1e-116
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	1e-116
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	1e-114
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	1e-112
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	1e-111
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	1e-110
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	1e-107
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	7e-97
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	2e-69
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	1e-66
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	1e-64
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	2e-40
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	6e-36
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	1e-29
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	6e-26
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	5e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464

 Score =  390 bits (1003), Expect = e-136
 Identities = 193/223 (86%), Positives = 212/223 (95%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE
Sbjct: 242 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE 301

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP
Sbjct: 302 VYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLP 361

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSH
Sbjct: 362 DHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 421

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           ASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD A +T PL
Sbjct: 422 ASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 464

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403

 Score =  355 bits (913), Expect = e-123
 Identities = 99/220 (45%), Positives = 146/220 (66%), Gaps = 2/220 (0%)

Query: 2   AHAHGALLL-VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
            H HG ++L VDN+ MSP   RPL LGADI M+SATK++ GHSDV+ G+++V  E L   
Sbjct: 177 VHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNR 236

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           L FLQN+ G+  +P DC++C RG+KT+ +R+EK   N   +A+FL S+P V+KV Y GLP
Sbjct: 237 LRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLP 296

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
            HP HEL   Q  G   +++F + G+L  ++  ++  K F++  S G  +SL  +P  M+
Sbjct: 297 SHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMT 356

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           HAS+    R   G+++ L+R+SVG+ED  DL+ DLD+AL+
Sbjct: 357 HASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALK 396

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393

 Score =  346 bits (890), Expect = e-120
 Identities = 103/226 (45%), Positives = 146/226 (64%), Gaps = 8/226 (3%)

Query: 2   AHAHGA----LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 57
              H A    +L+VDN+ +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L
Sbjct: 164 IKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPL 223

Query: 58  AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP-RVKKVNY 116
            + L FLQNA G+  +PFD W+  RG+KT+ LRV +   +A KIAEFLA+    V  VNY
Sbjct: 224 YERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNY 283

Query: 117 AGLPEHPGHELHYSQAKGA--GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLIS 173
            GL  HP +++   Q + A  G ++SF + G    +     +T+ F++  S G ++SL+ 
Sbjct: 284 PGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLE 343

Query: 174 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           +P  M+H  IP E R+A G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 344 VPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALK 389

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386

 Score =  345 bits (888), Expect = e-120
 Identities = 96/219 (43%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           A   GA+ +VDN+ +SP L  PL LGAD+V+HS TK++ GHSDV+AGV+  K   +  EL
Sbjct: 163 AREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTEL 222

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
            +  N  G     FD ++ LRG++T+  R+E  Q NAQ I ++L + P VKK+ +  LPE
Sbjct: 223 AWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPE 282

Query: 122 HPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           + GHE+   Q KG G++LSF L G     +  +     F++  S G V+SLIS    M+H
Sbjct: 283 NQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTH 342

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           A +  E R A G++E L+RIS GIED  DLI+DL+   R
Sbjct: 343 AGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFR 381

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score =  342 bits (881), Expect = e-119
 Identities = 91/217 (41%), Positives = 136/217 (62%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
            H  GA L+VD +  SP   +PLELGADI +HS +K+I GH DV+ GV + K       +
Sbjct: 170 CHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATI 229

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
            F +   GS +AP D ++C RG+KT+ +R++   +N  K+A+FL  H ++ KVN+ GL  
Sbjct: 230 KFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLES 289

Query: 122 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 181
            PGH++   Q  G GS   F   S   +K ++E  K  ++ VS G V +LI  P  M+HA
Sbjct: 290 FPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHA 349

Query: 182 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           ++P  + + +G+T +LVRISVGIE+V+D+I+DL +AL
Sbjct: 350 AVPENIMRKQGITPELVRISVGIENVDDIIADLKQAL 386

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400

 Score =  338 bits (870), Expect = e-117
 Identities = 101/219 (46%), Positives = 145/219 (66%), Gaps = 2/219 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK-GERLAKE 60
           A  HG L +VDN+  SP+L RPL LGAD+V+HSATK++ GHSD++ G+  V     LA++
Sbjct: 178 ARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQ 237

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           + FLQN+ G    PFD ++ LRG+KT+ LR+    +NA  +A++L +HP ++KV Y GL 
Sbjct: 238 MAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLA 297

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
            HP H L   Q  G G ++S  L G    +K   E T+ F++  S G V+SL++ P  M+
Sbjct: 298 SHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMT 357

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           HASIPV  R+  G+++ LVR+SVGIED+ DL  DL++AL
Sbjct: 358 HASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERAL 396

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392

 Score =  336 bits (863), Expect = e-116
 Identities = 96/218 (44%), Positives = 132/218 (60%), Gaps = 4/218 (1%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
                A +LVDN+  SP L +PL LGAD+V+HS TK+I GHSDV+ G L    E L +  
Sbjct: 177 GADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSF 236

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
            FLQN  G+   PFD ++ +RG+KT+ LR+++  +NA  +AEFLA HP +  V Y GLP 
Sbjct: 237 AFLQNGAGAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPS 296

Query: 122 HPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           HPGH +   Q +G G ++S  +      ++ +   T  F +  S GSV+SLI  P  M+H
Sbjct: 297 HPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTH 356

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           AS          + +DLVR+SVGIEDV DL+ DL +AL
Sbjct: 357 ASTA---GSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331

 Score =  332 bits (855), Expect = e-116
 Identities = 98/218 (44%), Positives = 147/218 (67%), Gaps = 1/218 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-E 60
                 L++VDN+  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK +
Sbjct: 110 RKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVK 169

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
              +++  G+ ++P D W+  RG  T+ +RV++  +NAQK+AEFL  H  VKKV Y GLP
Sbjct: 170 SQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLP 229

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +HPGHE+   Q K  GS+++F    L  +K V++     S+ VS G  +SLI  P  M+H
Sbjct: 230 DHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTH 289

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           A +P E R+A GLT++L+R+SVG E+V D+I DL +AL
Sbjct: 290 AGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQAL 327

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445

 Score =  332 bits (853), Expect = e-114
 Identities = 83/219 (37%), Positives = 129/219 (58%), Gaps = 2/219 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           + H  GAL+ +D +  +P+  + L LGAD+V+HSATKF+ GH+DV+AG +     +L  E
Sbjct: 225 LCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCI-SGPLKLVSE 283

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +  L +  G  L P   ++ +RG+KT+ LRV++Q   A ++AE L +HP+V+ V Y GL 
Sbjct: 284 IRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQ 343

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
            HP H +   Q  G G  +SF + G L  +   V+  K   I  SFG  +S++  P  MS
Sbjct: 344 SHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMS 403

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           +  +    R   G+ ++LVR S G+ED +DL +D+ +AL
Sbjct: 404 YWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQAL 442

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score =  326 bits (839), Expect = e-112
 Identities = 88/220 (40%), Positives = 140/220 (63%), Gaps = 2/220 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-E 60
           A  HGA ++VDN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++      + +  
Sbjct: 176 ARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIR 235

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           L  L++  G+ L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL 
Sbjct: 236 LQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLA 295

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
             P + L   Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+
Sbjct: 296 SFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMT 355

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           H+S   E R   G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 356 HSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404

 Score =  323 bits (830), Expect = e-111
 Identities = 86/222 (38%), Positives = 147/222 (66%), Gaps = 3/222 (1%)

Query: 2   AHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK- 59
           AH+  G L++ DN+  SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L + 
Sbjct: 173 AHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQI 232

Query: 60  ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
            +  +++  GS ++P D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G 
Sbjct: 233 RMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGF 292

Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
            +H GH++   Q +  GS+++F L      +K +++  K  ++ VS G  +SLI  P  M
Sbjct: 293 EDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASM 352

Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 220
           +HA +P E R+A G+T+ ++R+SVGIED ++LI+D  + L  
Sbjct: 353 THAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDA 394

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score =  321 bits (825), Expect = e-110
 Identities = 93/220 (42%), Positives = 141/220 (64%), Gaps = 2/220 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-E 60
           AH  GALL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +  
Sbjct: 175 AHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQAR 234

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
              L++  G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL 
Sbjct: 235 FVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLS 294

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
            HP +EL   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+
Sbjct: 295 SHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMT 354

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           H+ +  E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 355 HSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score =  314 bits (807), Expect = e-107
 Identities = 83/223 (37%), Positives = 134/223 (60%), Gaps = 5/223 (2%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AHA GA +++DN   +P+L +   LG D+V++S TK I G   V+ G +    E +   
Sbjct: 191 LAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGP 250

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +  L    G  ++ F+ W+ L+G++T+A+RV+    +AQ+IAEFL  HP V+ V Y  LP
Sbjct: 251 VQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLP 310

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSK----HVVETTKYFSITVSFGSVKSLISMP 175
            HP ++L   Q  G G+V++F L     ++K     V++  +   I+ + G  KSL++ P
Sbjct: 311 SHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHP 370

Query: 176 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
              +H ++  E R A GL + +VRISVG+ED +DLI+D+D+AL
Sbjct: 371 ATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score =  287 bits (737), Expect = 7e-97
 Identities = 66/220 (30%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           +    A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R  ++L
Sbjct: 195 SVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQL 253

Query: 62  YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 121
                  G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP 
Sbjct: 254 RENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPG 313

Query: 122 HPGHELHYSQAKGAGSVLSFL---TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
             GHE       G+  + SF+     +     + ++    FS+  S+G  +SLI      
Sbjct: 314 SKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPE 373

Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
             A+I    +     +  L+R+ +G+EDV+DLI+DLD   
Sbjct: 374 HIAAIR--PQGEIDFSGTLIRLHIGLEDVDDLIADLDAGF 411

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score =  217 bits (555), Expect = 2e-69
 Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 24/240 (10%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------ 54
           + HA G  L+VD ++  P L     LG DI + S+TKFI+G    + GVL   G      
Sbjct: 192 VVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKS 251

Query: 55  --------ERLAKELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQ 99
                    +     +         QN  G  L+P + ++   G++TMALR+E+   NAQ
Sbjct: 252 LPSLAPYYAKAGPMAFLYKARKEVFQN-LGPSLSPHNAYLQSLGLETMALRIERSCQNAQ 310

Query: 100 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKY 158
           ++A +L S P+VK VN+  LP+ P + +   Q + AGS+L+F L    A S   ++  K 
Sbjct: 311 ELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEA-SYRFMDALKL 369

Query: 159 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
                +    KSLI  P  + +A    E R    ++  ++R+SVGIE++ DL  D+ +AL
Sbjct: 370 IRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score =  210 bits (536), Expect = 1e-66
 Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 31/248 (12%)

Query: 1   MAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL--------- 50
           +A   G  L+VDN+   +  L RPL  GA +V+ S TK+ +GH  V+ G +         
Sbjct: 165 LAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWR 224

Query: 51  ------------AVKGERLAKELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRV 91
                        +  E L    +        L    G  L+PF+ ++  +G++T+ALRV
Sbjct: 225 NYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLC-GMALSPFNAYLLFQGLETVALRV 283

Query: 92  EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH 151
            +  + A+ +AE L  HP+VK + Y GLPE P H          G +L+   G L  +  
Sbjct: 284 ARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASR 343

Query: 152 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 211
            +   +      + G  ++L+  P   +H+ +  E R   G+T  LVR+SVG+ED  DL+
Sbjct: 344 FLGAIRLLKA-ANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLL 402

Query: 212 SDLDKALR 219
           +  ++AL 
Sbjct: 403 ALFEEALE 410

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421

 Score =  204 bits (522), Expect = 1e-64
 Identities = 81/254 (31%), Positives = 123/254 (48%), Gaps = 38/254 (14%)

Query: 1   MAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL--------- 50
            A   G  L+VDN+  M   L RPL  GA +V HS TK++ GH  V+AG +         
Sbjct: 169 AAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWE 228

Query: 51  ----------------AVKGERLAKELYFLQNA-------EGSGLAPFDCWICLRGVKTM 87
                               E    EL F+  A       +G  L PF+ W+ L G++T+
Sbjct: 229 GGRYPLLTEPQPGYHGLRLTEAFG-ELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETL 287

Query: 88  ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL--HYSQAKGAGSVLSF-LTG 144
           +LR E+  +N   +A +L   P+V  VNY GLP HP H+    Y +    G+VL+F L G
Sbjct: 288 SLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFK-GKPGAVLTFGLKG 346

Query: 145 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI 204
               +K  +   K  S   + G  ++L   P   +H+ +  E +   G++ ++VR+SVG+
Sbjct: 347 GYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL 406

Query: 205 EDVNDLISDLDKAL 218
           E V DL ++L +AL
Sbjct: 407 EHVEDLKAELKEAL 420

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score =  142 bits (360), Expect = 2e-40
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 3/142 (2%)

Query: 2   AHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
                 ++ VDN     +    P  +GAD++  S  K   G      G +  K +   + 
Sbjct: 197 EIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQ-YVEA 255

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGL 119
             +   + G G         L+ +             A K A F A+   ++        
Sbjct: 256 CAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGMNTSPAW 315

Query: 120 PEHPGHELHYSQAKGAGSVLSF 141
                  +   Q      +++F
Sbjct: 316 NAPRTDLIQSVQFDDKDRMIAF 337

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score =  129 bits (325), Expect = 6e-36
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 23/215 (10%)

Query: 1   MAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 55
            A    A++ VD++  + V         L+LGAD+V+ S  K + G      G+LA K E
Sbjct: 167 TAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP---RGGLLAGKKE 223

Query: 56  RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKIA----EFLASHPR 110
            L  ++Y      G    P       R +K   L R+ K  + A+       E L    +
Sbjct: 224 -LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELK 282

Query: 111 -VKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSF--G 166
            +           P   +     K      +  +   + +  ++++     +ITV+   G
Sbjct: 283 AIDDNINIVYERTPTGFVIKRVYKDD----TINIKKLIEIGFNLLKNYGIITITVAGMPG 338

Query: 167 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 201
           + KSL           I       + + E +    
Sbjct: 339 ASKSLRIDLTSRDAERIDDNYII-KAIVESIKMAF 372

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score =  112 bits (283), Expect = 1e-29
 Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 2   AHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
                 ++ VDN     V  + P ++GADI+  S  K I G      G +A K E    +
Sbjct: 208 EVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEE-YVTQ 266

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
             F     G G      +  +R +             A K A F A    +     AG  
Sbjct: 267 ATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKGAVFCARIMEL-----AGFD 321

Query: 121 EHPGHELHYSQ 131
             P +    + 
Sbjct: 322 VLPKYNDKRTD 332

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score =  102 bits (257), Expect = 6e-26
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 2   AHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
                 +  VDN     +    P ++GAD++  S  K I G      G LA   +   ++
Sbjct: 208 NIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKD-CIEK 266

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYA 117
             +     G G      +  +R +     +A  +  +   A K A   +    ++   + 
Sbjct: 267 TSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISME---ALKGAILCSRI--MELAGFE 321

Query: 118 GLPEH 122
            +P++
Sbjct: 322 VMPKY 326

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score = 91.8 bits (228), Expect = 5e-22
 Identities = 30/130 (23%), Positives = 44/130 (33%), Gaps = 15/130 (11%)

Query: 2   AHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
                 ++ VDN     V    P E+GADI+  S  K   G      G +A K   L   
Sbjct: 191 NINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEA-LVDL 249

Query: 61  LYFLQNAEG----SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY 116
             +     G    +G + +      +G   +A  V  Q   A K A F A       +  
Sbjct: 250 CGYRLTTPGIGREAGASLYSLLEMYQGF-FLAPHVTAQ---AIKGARFTA-----AMLAE 300

Query: 117 AGLPEHPGHE 126
            G+   P  +
Sbjct: 301 FGVEADPVWD 310

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 36/247 (14%), Positives = 70/247 (28%), Gaps = 75/247 (30%)

Query: 12  DNSIMSPV-LSRP----------LEL--GADIVMHSATKFIAGHSDVMAG----VLAVKG 54
           DN + +   +SR           LEL    ++++        G    + G     +A+  
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-------G----VLGSGKTWVALDV 170

Query: 55  ERLAKELYFLQNAEGSGLAPFDC-WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKK 113
                      + +      F   W+ L+   +    +E  Q    +I            
Sbjct: 171 ---------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP---------- 211

Query: 114 VNYAGLPEHPGH-ELHYSQAKGAGSVLSFLTG---SLALSKHV--VETTKYFS------I 161
            N+    +H  + +L     +     L         L +  +V   +    F+      +
Sbjct: 212 -NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 162 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED----LVRISVGIEDVNDLISDL-DK 216
           T  F  V   +S     +  +       +  LT D    L+   +          DL  +
Sbjct: 271 TTRFKQVTDFLS----AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPRE 321

Query: 217 ALRTGPL 223
            L T P 
Sbjct: 322 VLTTNPR 328

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	100.0
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	100.0
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	100.0
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	100.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	100.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	100.0
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	100.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	100.0
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	100.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	100.0
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	100.0
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.97
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.97
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.91
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.9
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.88
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.7
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.29
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.24
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.24
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.23
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.19
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.16
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.16
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.16
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.15
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.14
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.14
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.14
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.12
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.12
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.12
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.12
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.11
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.11
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.11
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.09
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.08
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.08
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.08
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.06
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.06
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.06
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.06
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.05
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.05
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.04
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.04
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.03
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.02
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.02
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.01
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.01
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.01
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.01
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.01
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.0
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.0
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	98.98
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	98.98
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	98.98
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.98
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	98.97
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	98.97
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	98.96
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	98.96
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	98.96
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	98.96
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	98.95
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	98.95
3nra_A	407	Aspartate aminotransferase; structural genomics, j	98.93
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	98.93
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	98.92
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	98.91
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	98.91
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	98.9
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	98.9
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	98.9
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	98.89
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	98.89
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.89
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	98.88
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	98.88
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	98.88
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	98.87
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	98.87
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	98.87
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	98.87
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	98.87
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	98.87
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	98.86
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	98.86
1vp4_A	425	Aminotransferase, putative; structural genomics, j	98.85
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	98.85
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	98.85
1iug_A	352	Putative aspartate aminotransferase; wild type, py	98.84
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	98.84
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	98.84
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	98.84
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	98.83
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	98.83
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	98.83
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	98.82
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	98.82
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	98.82
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	98.81
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	98.81
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	98.81
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	98.8
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	98.8
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	98.8
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	98.79
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	98.79
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	98.79
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	98.79
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	98.78
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	98.77
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	98.76
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	98.75
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	98.75
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.75
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	98.75
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	98.75
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	98.74
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	98.74
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	98.73
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.73
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	98.72
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	98.71
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	98.7
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	98.7
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	98.7
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	98.7
3ele_A	398	Amino transferase; RER070207001803, structural gen	98.68
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	98.68
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	98.67
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	98.66
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	98.65
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	98.65
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	98.65
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	98.65
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	98.64
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	98.64
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	98.64
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	98.64
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	98.63
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	98.63
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	98.62
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	98.62
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	98.62
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	98.62
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	98.62
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	98.62
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	98.61
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	98.6
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	98.6
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	98.6
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	98.6
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	98.59
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	98.59
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.58
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	98.58
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	98.56
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	98.55
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	98.55
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	98.54
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	98.54
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	98.52
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	98.51
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	98.51
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	97.9
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	98.5
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	98.5
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	98.5
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	98.49
3rq1_A	418	Aminotransferase class I and II; structural genomi	98.49
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	98.47
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	98.46
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	98.46
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	98.46
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	98.45
1z7d_A	433	Ornithine aminotransferase; structural genomics co	98.42
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	98.41
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	98.35
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	98.33
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	98.29
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	98.28
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	98.27
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	98.25
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	98.23
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	98.21
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	98.2
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	98.13
1o69_A	394	Aminotransferase; structural genomics, unknown fun	98.12
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	98.12
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	98.08
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.05
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	98.05
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	98.02
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	98.01
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	97.95
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	97.94
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	97.91
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	97.89
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	97.88
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	97.88
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	97.86
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	97.79
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	97.78
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	97.75
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	97.72
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	97.72
3hmu_A	472	Aminotransferase, class III; structural genomics,	97.7
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	97.63
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	97.62
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	97.6
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	97.59
1svv_A	359	Threonine aldolase; structural genomics, structura	97.59
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	97.58
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	97.58
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	97.56
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	97.53
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	97.52
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	97.52
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	97.33
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	96.24
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	97.05
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	96.89
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	96.5
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	96.46
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	96.29
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	95.33

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=100.00  E-value=6.4e-54  Score=392.72  Aligned_cols=218  Identities=33%  Similarity=0.428  Sum_probs=194.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChh-H------------------HHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-L------------------AKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~-~------------------~~~l   61 (223)
                      +||++|++||||||+++|+.++|+++|+|++++|+||+++||+|++||+++.+++. +                  ..++
T Consensus       192 la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~  271 (430)
T 3ri6_A          192 VVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKA  271 (430)
T ss_dssp             HHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHH
T ss_pred             HHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHH
Confidence            47899999999999999999999999999999999999999999999999865431 1                  1222


Q ss_pred             H-HHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCe-eE
Q 027424           62 Y-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VL  139 (223)
Q Consensus        62 ~-~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~gg-l~  139 (223)
                      + ......|..++|+++|+++++++++..|++++++||+++++||+++|.|++|+||++++||+|+++++|+ |+|| |+
T Consensus       272 ~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~-g~Gg~~l  350 (430)
T 3ri6_A          272 RKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQF-RYAGSIL  350 (430)
T ss_dssp             HHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHC-SSCCSEE
T ss_pred             HHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhC-CCCceEE
Confidence            2 2345678899999999999999999999999999999999999999999999999999999999999999 9999 99


Q ss_pred             EEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          140 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       140 sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      ||++++.+.+++|++++++|.+++|||+++||+++|++++|+.+++|+|++.|+++++||||||+||++||++||+|||+
T Consensus       351 sf~l~~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~dl~~dl~~al~  430 (430)
T 3ri6_A          351 TFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQALC  430 (430)
T ss_dssp             EEECSSHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             EEEECCHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHhhC
Confidence            99998888999999999999999999999999999999999999999999999999999999999999999999999985

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=100.00  E-value=1.3e-52  Score=380.12  Aligned_cols=219  Identities=45%  Similarity=0.772  Sum_probs=210.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCccccee-EEEecChhHHHHHHHHHHhcCCCCChHhHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQNAEGSGLAPFDCWI   79 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G-~v~~~~~~~~~~l~~~~~~~g~~~sp~da~l   79 (223)
                      +||++|+++|||||+++|+.++|+++|+|++++|+||+++||++.++| +++.+++++.++++......|..++|+++|+
T Consensus       177 la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~  256 (400)
T 3nmy_A          177 IARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFL  256 (400)
T ss_dssp             HHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHH
T ss_pred             HHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            478999999999999999999999999999999999999999999999 8878888888888888888899999999999


Q ss_pred             HHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-CHHHHHHHHhhcCc
Q 027424           80 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKY  158 (223)
Q Consensus        80 l~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~~~~~~~f~~~l~l  158 (223)
                      ++++++++..|++++.+|+.++++||++||.|.+|+||++++||+|+++++|++|+|+|++|++. +.+.+++|++++++
T Consensus       257 ~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~  336 (400)
T 3nmy_A          257 ALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTEL  336 (400)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSS
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999995 45779999999999


Q ss_pred             ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          159 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       159 ~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      |.+++|||+++||+++|++++|+.+++++++++||++++||||||+||++|||+||+|||+
T Consensus       337 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~  397 (400)
T 3nmy_A          337 FTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV  397 (400)
T ss_dssp             SEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             ceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999997

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.6e-49  Score=361.31  Aligned_cols=219  Identities=37%  Similarity=0.640  Sum_probs=205.9

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +|+++|++||+|+|++++..++|+++|+|++++|+||+++||++.++|+++++++.+.+.++......|..++|+++|++
T Consensus       191 la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~  270 (414)
T 3ndn_A          191 LAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVL  270 (414)
T ss_dssp             HHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHH
T ss_pred             HHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            47899999999999999988899999999999999999999999999999876654444666666777889999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CC----HHHHHHHHhh
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GS----LALSKHVVET  155 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~----~~~~~~f~~~  155 (223)
                      +++++++..|++++.+|+.++++||+++|.|.+|+||+++++|+|++++++++|+|+|++|++ ++    .+.+++|+++
T Consensus       271 ~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~  350 (414)
T 3ndn_A          271 LKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDK  350 (414)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999 44    7889999999


Q ss_pred             cCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          156 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       156 l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      ++++.+++|||+++||+++|+.++|+.+++++|++.|+++++||||||+||++||++||+|||+
T Consensus       351 l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al~  414 (414)
T 3ndn_A          351 MRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRALS  414 (414)
T ss_dssp             CSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             CccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999984

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=100.00  E-value=4.2e-46  Score=342.46  Aligned_cols=220  Identities=37%  Similarity=0.637  Sum_probs=206.5

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++++||||+++++.++|+++|+|++++|+||+++||+|+.+|++++++ ++.+++.......|..++|+++|++
T Consensus       225 la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~~~l~~~~~~~g~~~~~~~a~~~  303 (445)
T 1qgn_A          225 LCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPL-KLVSEIRNLHHILGGALNPNAAYLI  303 (445)
T ss_dssp             HHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH-HHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred             HHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECH-HHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            478999999999999999999999999999999999999999999999988754 6777777777778888999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-CHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~~~~~~~f~~~l~l~  159 (223)
                      +++++++..|++++.+|+.+++++|+++|.|.+|+||++++||+|+++++|++|+|++++|++. +.+.+.+|+++++++
T Consensus       304 ~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~  383 (445)
T 1qgn_A          304 IRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIP  383 (445)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSS
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999994 556789999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      .+++|+|+.+|++++|++++|..++++.+..+|+++++||||||+||++||++||++||+++
T Consensus       384 ~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~Edid~li~~L~~al~~~  445 (445)
T 1qgn_A          384 YIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI  445 (445)
T ss_dssp             EECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred             eEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999853

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=100.00  E-value=3.5e-44  Score=322.86  Aligned_cols=216  Identities=44%  Similarity=0.748  Sum_probs=204.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++++||+|+++++.++|+.+|+|++++|+||+++||+|..+|+++.+++++.+.+.......|...+|++++++
T Consensus       176 la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~  255 (392)
T 3qhx_A          176 LGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLT  255 (392)
T ss_dssp             HHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred             HHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999888778888888777778889999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-CHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~~~~~~~f~~~l~l~  159 (223)
                      +++++++..|++++.+|+..++++|+++|.|.+|+||+++++|+|++++++++|+|+|++|++. +.+.+++|+++++++
T Consensus       256 ~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~  335 (392)
T 3qhx_A          256 MRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIF  335 (392)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSS
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999994 478899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      .+++|+|+.+|++++|..++|..++++   ..|+.+++||||||+|+++|+++||++||+
T Consensus       336 ~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg~e~~~~~i~~l~~al~  392 (392)
T 3qhx_A          336 ILAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLDDLKQALG  392 (392)
T ss_dssp             EECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             eECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence            999999999999999999999888765   889999999999999999999999999984

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=100.00  E-value=1.5e-42  Score=313.67  Aligned_cols=220  Identities=45%  Similarity=0.794  Sum_probs=206.8

Q ss_pred             CccccC-CEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHH
Q 027424            1 MAHAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI   79 (223)
Q Consensus         1 ia~~~g-~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~l   79 (223)
                      +||++| +++|||+|++.+..++|+++|+|++++|+||+++||+++.+|+++++++++.++++......|.+.+|+++++
T Consensus       176 la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~  255 (403)
T 3cog_A          176 IVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYL  255 (403)
T ss_dssp             HHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred             HHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            478999 9999999999998889999999999999999999999988898888777787888777777788899999999


Q ss_pred             HHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCc
Q 027424           80 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKY  158 (223)
Q Consensus        80 l~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l  158 (223)
                      +.++++++..|++++.+|+..+++||+++|.|.+|.||+|+++|+++++.+++++.|++++|++ ++.+.+.+|++++++
T Consensus       256 ~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i  335 (403)
T 3cog_A          256 CNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKL  335 (403)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSS
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999999999999999999999899999999999 456788999999999


Q ss_pred             ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          159 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       159 ~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      +..++|+|+++||+++|++++|..++++.+...|+++++||||||+|+.+|+|+||.+||++
T Consensus       336 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~  397 (403)
T 3cog_A          336 FTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA  397 (403)
T ss_dssp             SEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             ceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999974

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=100.00  E-value=6.8e-43  Score=318.13  Aligned_cols=216  Identities=29%  Similarity=0.506  Sum_probs=197.7

Q ss_pred             Cccc--cCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHH
Q 027424            1 MAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW   78 (223)
Q Consensus         1 ia~~--~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~   78 (223)
                      +||+  +|++++||+|+++++.++|+++|+|++++|+||+++||+++++|+++.++ ++.++++......|..++|+++|
T Consensus       192 la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~-~~~~~l~~~~~~~G~~~~~~~a~  270 (415)
T 2fq6_A          192 AVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNA-RCWEQLRENAYLMGQMVDADTAY  270 (415)
T ss_dssp             HHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECT-TTHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCH-HHHHHHHHHHHhcCCCCCHHHHH
Confidence            4788  99999999999999989999999999999999999999999999998776 46677777777788889999999


Q ss_pred             HHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC---HHHHHHHHhh
Q 027424           79 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSKHVVET  155 (223)
Q Consensus        79 ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~---~~~~~~f~~~  155 (223)
                      +++++++++..|++++.+|+..+++||+++|.|.+|+||+++++|+|+++++++.++|++++|++++   .+.+++|+++
T Consensus       271 ~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~  350 (415)
T 2fq6_A          271 ITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDN  350 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTT
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999954   6789999999


Q ss_pred             cCcceeccccCCCCCCCCC--CccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          156 TKYFSITVSFGSVKSLISM--PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       156 l~l~~~~~s~G~~~sli~~--p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      ++++.+++|+|+.+|++++  |+.++|...    .+++|+++++||||||+|+.+|+|+||.+||+++
T Consensus       351 l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~----~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~  414 (415)
T 2fq6_A          351 FSLFSMAYSWGGYESLILANQPEHIAAIRP----QGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  414 (415)
T ss_dssp             CSSCEECSCCCSSSCEEEEECHHHHHTTCT----TCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred             CCcCeEeccCCCCceeEEecCCCccccccc----hhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999998  888887431    1257888999999999999999999999999864

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=100.00  E-value=4.7e-42  Score=308.18  Aligned_cols=220  Identities=41%  Similarity=0.725  Sum_probs=206.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|++++||+|++.++.++|+++|+|++++|+||+++||++.++|+++++++++.++++......|..++|.+++++
T Consensus       169 ~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~  248 (389)
T 3acz_A          169 VCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLC  248 (389)
T ss_dssp             HHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred             HHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47899999999999999988899999999999999999999999998888887646777777766667888999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +++++++..|++++.+|+..++++|+++|.|.++.||+|+++|+++++.++++|+|++++|++.+.+.+.+|++.++++.
T Consensus       249 ~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~l~~~~i~~  328 (389)
T 3acz_A          249 ARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCT  328 (389)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSHHHHHHHHTTCSSSE
T ss_pred             HcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECCHHHHHHHHHhCCCcE
Confidence            99999999999999999999999999999999999999999999999999989999999999955778899999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      .++||||++||+++|++++|+.++++++...|+++++||||||+||.+|+++||++||++
T Consensus       329 ~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~~  388 (389)
T 3acz_A          329 LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALEL  388 (389)
T ss_dssp             EBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHTC
T ss_pred             ECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999975

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=1.7e-40  Score=301.33  Aligned_cols=219  Identities=34%  Similarity=0.581  Sum_probs=196.6

Q ss_pred             CccccCCEEEEecCC-CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecC-hhH----HHHH-------------
Q 027424            1 MAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERL----AKEL-------------   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~-~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~-~~~----~~~l-------------   61 (223)
                      +||++|+++|||+++ +.++..+|+.+|+|+++.|+||+++||++.+||+++.++ .++    .+.+             
T Consensus       169 ~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~  248 (421)
T 2ctz_A          169 AAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLT  248 (421)
T ss_dssp             HHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHH
T ss_pred             HHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhh
Confidence            478999999999999 888878899999999999999999999999999887632 111    1111             


Q ss_pred             ------------HH-HHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHH
Q 027424           62 ------------YF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  128 (223)
Q Consensus        62 ------------~~-~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  128 (223)
                                  +. ....+|..++|..+|+.+++++++..|++++.+|+..++++|+++|.|..|.||+++++|+|+++
T Consensus       249 ~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~  328 (421)
T 2ctz_A          249 EAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRA  328 (421)
T ss_dssp             HHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHH
T ss_pred             hhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHH
Confidence                        11 12446778999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh-CCCCeeEEEEeCC-HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC
Q 027424          129 YSQA-KGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED  206 (223)
Q Consensus       129 ~~~~-~g~ggl~sf~~~~-~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd  206 (223)
                      ++++ +|.|+|++|++.+ .+.+.+|+++++++.+++|+|+.+|++++|+.++|..+++++++.+|+++++||+|||+||
T Consensus       329 ~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~e~  408 (421)
T 2ctz_A          329 QKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEH  408 (421)
T ss_dssp             HHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSC
T ss_pred             HHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCCCC
Confidence            9999 7999999999965 4678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027424          207 VNDLISDLDKALR  219 (223)
Q Consensus       207 ~~dL~~dl~~Al~  219 (223)
                      ++||++||++||+
T Consensus       409 ~~~li~~l~~al~  421 (421)
T 2ctz_A          409 VEDLKAELKEALA  421 (421)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999985

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=100.00  E-value=3.4e-38  Score=283.32  Aligned_cols=221  Identities=38%  Similarity=0.651  Sum_probs=186.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh-cCCCCChHhHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGSGLAPFDCWI   79 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~-~g~~~sp~da~l   79 (223)
                      +|+++|+++++|++++.+....|+.+|+|+++.|+||+++|+++.++|+++++++.+.+.++..... .|.+++|..++.
T Consensus       175 l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (398)
T 1gc0_A          175 IARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAAL  254 (398)
T ss_dssp             HHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHH
T ss_pred             HHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHH
Confidence            4789999999999998887778899999999999999999999999898877654444355555555 677889999999


Q ss_pred             HHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC-HHHHHHHHhhcCc
Q 027424           80 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKY  158 (223)
Q Consensus        80 l~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~-~~~~~~f~~~l~l  158 (223)
                      +.++++++..|+++..+|+..++++|+++|.|.+|.||+++++|+|+++.+++.+.|++++|++.+ .+.+.+|++.+++
T Consensus       255 ~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i  334 (398)
T 1gc0_A          255 LMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQL  334 (398)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSS
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999888999999999954 4678999999999


Q ss_pred             ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          159 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       159 ~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      +..++|+|+.+|++++|.+++|..++.+.+..+|++++.||||+|+|+.+|++++|.+||+++
T Consensus       335 ~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          335 FSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             SEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999853

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=8.9e-38  Score=281.36  Aligned_cols=221  Identities=45%  Similarity=0.766  Sum_probs=202.6

Q ss_pred             Ccccc----CCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHh
Q 027424            1 MAHAH----GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD   76 (223)
Q Consensus         1 ia~~~----g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~d   76 (223)
                      +||++    |++++||++++.+...+|+++|+|+++.|+||+++|+++.+||+++++++++.+.+.......|..++|.+
T Consensus       163 la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~  242 (393)
T 1n8p_A          163 LIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFD  242 (393)
T ss_dssp             HHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             HHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHH
Confidence            46788    99999999998776668889999999999999999999999998888767777777766666788889999


Q ss_pred             HHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCC-eeEEEcCCCCCCcchHHHHhhhCC-C-CeeEEEEeC-CHHHHHHH
Q 027424           77 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR-VKKVNYAGLPEHPGHELHYSQAKG-A-GSVLSFLTG-SLALSKHV  152 (223)
Q Consensus        77 a~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~-v~~V~yP~l~~~~~~~~~~~~~~g-~-ggl~sf~~~-~~~~~~~f  152 (223)
                      ++++.++++++..|+++..+|+..++++|+++|. +.+|.||+++++|+|+++.++++| . |++++|++. +.+.+++|
T Consensus       243 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~  322 (393)
T 1n8p_A          243 AWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKF  322 (393)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHH
Confidence            9999999999999999999999999999999998 999999999999999999998877 7 999999994 56779999


Q ss_pred             HhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          153 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       153 ~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      ++.++++.+++|+|+..|++.+|+.++|..++.+.++.+|+++++||||+|+|+.+|+|+||.+||+++
T Consensus       323 l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          323 ASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             HHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999988889999999999999999999999999999999864

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=4.7e-37  Score=277.36  Aligned_cols=220  Identities=39%  Similarity=0.719  Sum_probs=198.7

Q ss_pred             Cccc-cCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc-CCCCChHhHH
Q 027424            1 MAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-GSGLAPFDCW   78 (223)
Q Consensus         1 ia~~-~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~-g~~~sp~da~   78 (223)
                      +|++ +|+++|+|++++.+....|+++|+|+++.|+||+++|+++.++|+++++++.+.+++....... |..++|+.++
T Consensus       172 la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~  251 (404)
T 1e5e_A          172 DAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAW  251 (404)
T ss_dssp             HHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHH
T ss_pred             HHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence            4788 9999999999998887789999999999999999999999987888776543332565444445 6678999999


Q ss_pred             HHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH-HHHHHHHhhcC
Q 027424           79 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTK  157 (223)
Q Consensus        79 ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~-~~~~~f~~~l~  157 (223)
                      .+.++++++..|++++.+|+..+++||++++.|.++.||+|+++|++++...+++|.|++++|++.+. +.+.+|++.++
T Consensus       252 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~  331 (404)
T 1e5e_A          252 LITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLK  331 (404)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCS
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999998889999999998654 66888999999


Q ss_pred             cceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          158 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       158 l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      ++..++|||+++||+++|+.++|..++++++...|++++.||||+|+||.++++++|++|++.
T Consensus       332 i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          332 LITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDA  394 (404)
T ss_dssp             SSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             CceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999974

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=100.00  E-value=8.7e-37  Score=275.56  Aligned_cols=220  Identities=32%  Similarity=0.570  Sum_probs=198.4

Q ss_pred             CccccCCEEEEecCCCCC-CCcCcccCCCcEEEecccccccCCcccceeEEEecCh------------------------
Q 027424            1 MAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE------------------------   55 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~------------------------   55 (223)
                      +|+++|+++++|++++.+ +.++|+..|+|+++.|+||+++|+++.+||+++.+++                        
T Consensus       165 l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  244 (412)
T 2cb1_A          165 LAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALR  244 (412)
T ss_dssp             HHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHG
T ss_pred             HHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccc
Confidence            478999999999999888 7788999999999999999999999999998876643                        


Q ss_pred             --hHHHHHHHHH-HhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           56 --RLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        56 --~~~~~l~~~~-~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                        ++.++++... +..|..++|..+|+..++++++..|+++..+++..++++|+++|.|..|+||++++||+|+++++++
T Consensus       245 ~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~  324 (412)
T 2cb1_A          245 ARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYL  324 (412)
T ss_dssp             GGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhC
Confidence              3334444333 4457678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHH
Q 027424          133 KGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS  212 (223)
Q Consensus       133 ~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~  212 (223)
                      .+.|++++|++++.+.+.+|+++++++. +.|||+.+|++++|++++|..+++++++++|++++.||+|+|+|+.+|+++
T Consensus       325 ~~~~~iv~~~~~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~  403 (412)
T 2cb1_A          325 ASGGPILTLDLGDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLA  403 (412)
T ss_dssp             SSSCSEEEEECSSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHH
T ss_pred             CCCceEEEEEeCCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHH
Confidence            9999999999966678899999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 027424          213 DLDKALRTG  221 (223)
Q Consensus       213 dl~~Al~~~  221 (223)
                      +|.+||+++
T Consensus       404 ~l~~al~~~  412 (412)
T 2cb1_A          404 LFEEALEAV  412 (412)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhhC
Confidence            999999863

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=100.00  E-value=5.5e-36  Score=276.16  Aligned_cols=223  Identities=87%  Similarity=1.310  Sum_probs=204.5

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +|+++|++||+|++++.+..+.|+++|+|++++|+||+++||++.++|+++++++++.+.+.......|..++|++++.+
T Consensus       242 la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~  321 (464)
T 1ibj_A          242 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLC  321 (464)
T ss_dssp             HHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred             HHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47899999999999998887889999999999999999999988889989887767777777776667878899999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +++++++..|+++..+|+..+++||++++.+.++.||+|.++|+++++..+.+|+|++++|++++.+..++|++.|+.+.
T Consensus       322 ~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~g  401 (464)
T 1ibj_A          322 LRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFS  401 (464)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSE
T ss_pred             HhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcce
Confidence            99999999999999999999999999999999999999999999999888888899999999976666778999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  223 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~~  223 (223)
                      +++++|+++||+++|+.++|+.++++.+...|++++.||||+|+||.++++++|++||++.|.
T Consensus       402 i~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~edi~~li~~L~~al~~~~~  464 (464)
T 1ibj_A          402 IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL  464 (464)
T ss_dssp             ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred             EeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHhhcCC
Confidence            999999999999999999998888777888899999999999999999999999999998774

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=100.00  E-value=3.6e-32  Score=243.61  Aligned_cols=221  Identities=41%  Similarity=0.743  Sum_probs=197.8

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc-CCCCChHhHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-GSGLAPFDCWI   79 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~-g~~~sp~da~l   79 (223)
                      +|+++|+++++|++++.+....|+.+|+|+++.|+||+++|++..++|+++++++.+.+.++...... |.+.+|..++.
T Consensus       174 l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (398)
T 2rfv_A          174 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWL  253 (398)
T ss_dssp             HHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHH
T ss_pred             HHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence            47899999999999998887789999999999999999999999888888776543332555555555 67889999999


Q ss_pred             HHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC-HHHHHHHHhhcCc
Q 027424           80 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKY  158 (223)
Q Consensus        80 l~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~-~~~~~~f~~~l~l  158 (223)
                      +.++++++..|+++..+|+..++++|+++|.|.+|.||+|+++|++.+...+.++.|++++|++.+ .+.+.+|++.++.
T Consensus       254 ~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~  333 (398)
T 2rfv_A          254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVEL  333 (398)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSS
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999999999999999988778899999999964 4668889999999


Q ss_pred             ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          159 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       159 ~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      ..+++++|+.+|++++|...+|..++.+.+...|++++.||||+|+|+.+|++++|.+||+.+
T Consensus       334 ~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          334 CLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  396 (398)
T ss_dssp             SEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999998888889999999999999999999999999999999753

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.97  E-value=7.2e-31  Score=228.36  Aligned_cols=221  Identities=45%  Similarity=0.738  Sum_probs=196.2

Q ss_pred             Cccc-cCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh-cCCCCChHhHH
Q 027424            1 MAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGSGLAPFDCW   78 (223)
Q Consensus         1 ia~~-~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~-~g~~~sp~da~   78 (223)
                      +|++ +|+++++|++++.+....|+++|+|+++.|++|+++|++..++|+++++++++.++++..... .|.+.+|..++
T Consensus       108 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (331)
T 1pff_A          108 QARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAW  187 (331)
T ss_dssp             HHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHH
T ss_pred             HHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHH
Confidence            4788 999999999998776667788899999999999999999887888877653666666554444 46678888999


Q ss_pred             HHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCc
Q 027424           79 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  158 (223)
Q Consensus        79 ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l  158 (223)
                      .+.++++++..|+++..+|+..+.++|++++.+.++.||++.+.|++.+...+.++.|++++|.+.+.+...++++..++
T Consensus       188 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI  267 (331)
T 1pff_A          188 LITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHV  267 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSS
T ss_pred             HHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999988887778899999999777778899999999


Q ss_pred             ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          159 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       159 ~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      +..+.|+|+.+|++.+|...+|..++.+.+...|++++.||+|+|+++.++.++++.++|+++
T Consensus       268 ~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          268 VSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             SEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             ceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence            988999999999999998889988888888899999999999999999999999999999864

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.97  E-value=6.7e-30  Score=227.68  Aligned_cols=221  Identities=43%  Similarity=0.676  Sum_probs=197.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +|+++|+++|+|++++.+....|+++|+|+++.|++|+++|++..++|+++++++++.+.+.......+...+|..++..
T Consensus       162 l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  241 (386)
T 1cs1_A          162 LAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLL  241 (386)
T ss_dssp             HHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHH
T ss_pred             HHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47899999999999988877778889999999999999999998888888887756777776665556667899999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-CHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~~~~~~~f~~~l~l~  159 (223)
                      .++++.+..|+++..+|+..+.++|+++|.+.++.||++.+.|++++...+.++.|++++|++. ..+...++++..+++
T Consensus       242 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~  321 (386)
T 1cs1_A          242 LRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLF  321 (386)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSS
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcc
Confidence            8999999999999999999999999999999999999999999999998877889999999994 456678888888998


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      ..+.++|+.+|++++|.++.|...+.+.+...|+.++.||||+|+|+.++++++|.+||+.+
T Consensus       322 ~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          322 TLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             EEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             eEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            87888999999999999999998888888899999999999999999999999999999853

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.91  E-value=1.3e-24  Score=198.60  Aligned_cols=202  Identities=14%  Similarity=0.078  Sum_probs=162.8

Q ss_pred             Cccc--cCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--HhcCCCCCh-
Q 027424            1 MAHA--HGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAP-   74 (223)
Q Consensus         1 ia~~--~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--~~~g~~~sp-   74 (223)
                      +||+  +|++++|||+++.+. .++|+++|+||+++|+||+++||++..||+++++ +++.++++...  ...|..++| 
T Consensus       205 la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~g~~~~~~  283 (427)
T 3i16_A          205 CVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGIGGECGST  283 (427)
T ss_dssp             HHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCC
T ss_pred             HHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCccCccCCcc
Confidence            4678  999999999999987 7899999999999999999999999999999765 56777776532  345556677 


Q ss_pred             Hh-HHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHH
Q 027424           75 FD-CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  153 (223)
Q Consensus        75 ~d-a~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~  153 (223)
                      ++ +++++++++++..|++++.+||..+++||++++.  +| ||+ ++||+|++          +++|++++.+.+.+|+
T Consensus       284 ~~~a~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~~----------i~~i~l~~~~~~~~f~  349 (427)
T 3i16_A          284 FGVVRSMYQGLFLAPHISMEALKGAILCSRIMELAGF--EV-MPK-YDEKRSDI----------IQSIKFNDKDKLIEFC  349 (427)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCccE----------EEEEEECCHHHHHHHH
Confidence            77 8999999999999999999999999999999997  88 999 89998865          9999999999999999


Q ss_pred             hhcCcceecccc--------CCCCCCCCCCc-c---ccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          154 ETTKYFSITVSF--------GSVKSLISMPC-F---MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       154 ~~l~l~~~~~s~--------G~~~sli~~p~-~---~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      ++|+.+....|+        .|+++-+...+ +   -+..+++    +...+-+..+...=|=...+...-.+.+|+.+.
T Consensus       350 ~~l~~~~~~~s~~~p~~~~~~gy~~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (427)
T 3i16_A          350 KGIQTGSPIDSFVSCEPWDMPGYTDQVIMAAGAFIQGSSIELS----ADAPIREPYIAYLQGGLTFDHAKIGILIALSRI  425 (427)
T ss_dssp             HHHHHTCSSSTTSCCCCBCC---CCCEEEEECCSSTTCSSSSE----EEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             HHHhhcCcccccccCcCCCCCCCCCceeeccCcCCCCcccccc----CCCCCCCCeEEEEcCCccHHHHHHHHHHHHHHH
Confidence            999999887775        33333221110 1   1122222    334567888999999999999999999988764

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.90  E-value=1.8e-23  Score=191.13  Aligned_cols=202  Identities=15%  Similarity=0.080  Sum_probs=161.0

Q ss_pred             Cccc--cCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcCCCCCh-
Q 027424            1 MAHA--HGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAP-   74 (223)
Q Consensus         1 ia~~--~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g~~~sp-   74 (223)
                      +||+  +|++++||++++.++ .++|+++|+||++.|+||+++||++..||+++++ +++.++++....  ..|..++| 
T Consensus       205 ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g~~~~~~  283 (427)
T 3hvy_A          205 SIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIGGECGST  283 (427)
T ss_dssp             HHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCC
T ss_pred             HHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCcccccCCC
Confidence            4678  899999999999987 6899999999999999999999999999999775 677777766442  33433444 


Q ss_pred             -HhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHH
Q 027424           75 -FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  153 (223)
Q Consensus        75 -~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~  153 (223)
                       ..+++++++++++..|++++.+||..++++|++++.  +| ||+ +++|.|++          +++|.+++.+.+.+|+
T Consensus       284 ~~~a~~~~~gl~~~~~r~~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~l----------i~~~~l~~~~~~~~f~  349 (427)
T 3hvy_A          284 FGVMRSLYEGLFMAPHVTIEAVKGAVFCARIMELAGF--DV-LPK-YNDKRTDI----------IQAIKFNDEKKLIDFI  349 (427)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------EEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCceE----------EEEEeCCCHHHHHHHH
Confidence             449999999999999999999999999999999996  88 999 88887754          9999999999999999


Q ss_pred             hhcCcceecccc--------CCCCCCCCCCc-c---ccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          154 ETTKYFSITVSF--------GSVKSLISMPC-F---MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       154 ~~l~l~~~~~s~--------G~~~sli~~p~-~---~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      ++++.+....|+        +|+++.+...+ +   -+..+++    +...+-+..+...=|-...+...-.+.+|+.+.
T Consensus       350 ~~l~~~~~~~s~~~p~~~~~~Gy~~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (427)
T 3hvy_A          350 KGIQTASPVDSFVQCEAWDMPGYEDKVIMAAGTFVQGASIELS----ADAPIREPYIGYLQGGLTFDHAKLGVLIALSKL  425 (427)
T ss_dssp             HHHHHTCSSSTTCCC----------CEEEECCCSSTTCSSSSE----EEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             HHhccccccccccCCCCCCCCCCcCceeeeccccCCCcccccc----CCCCCCCCeeEEEcCCccHHHHHHHHHHHHHHh
Confidence            999998766654        56666653321 1   1222333    345677889999999999999999999998865

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.88  E-value=2.1e-22  Score=182.90  Aligned_cols=199  Identities=17%  Similarity=0.110  Sum_probs=158.2

Q ss_pred             Cccc--cCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh------cCCC
Q 027424            1 MAHA--HGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA------EGSG   71 (223)
Q Consensus         1 ia~~--~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~------~g~~   71 (223)
                      +||+  +|++++|||+++.++ .++|+++|+|+++.|+||+++||++.+||+++++ +++.++++.....      .|..
T Consensus       188 la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~g~~  266 (409)
T 3jzl_A          188 FVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTPGIGREAGAS  266 (409)
T ss_dssp             HHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCC
T ss_pred             HHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhcccccccccccc
Confidence            3678  999999999999987 6899999999999999999999999999999775 6777777654322      2333


Q ss_pred             CChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHH
Q 027424           72 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH  151 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~  151 (223)
                      +++  +++++++++++..|++++.+||..++++|++++.  +| ||+ +++|+|++          +++|.+++.+.+.+
T Consensus       267 ~~~--~~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g~--~v-~p~-~~~~~~~~----------i~~i~l~~~~~~~~  330 (409)
T 3jzl_A          267 LYS--LLEMYQGFFLAPHVTAQAIKGARFTAAMLAEFGV--EA-DPV-WDAPRTDL----------IQSVSFHNKEKMVA  330 (409)
T ss_dssp             TTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CCEEECSCHHHHHH
T ss_pred             HHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCC--cc-cCC-CCCCCccE----------EEEEEeCCHHHHHH
Confidence            333  6889999999999999999999999999999986  78 999 88887754          99999999999999


Q ss_pred             HHhhcCcceecccc--------CCCCCCCCCCc-c---ccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          152 VVETTKYFSITVSF--------GSVKSLISMPC-F---MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       152 f~~~l~l~~~~~s~--------G~~~sli~~p~-~---~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      |+++|+.+....|+        +|+++-+...+ +   -+..+++    +...+-+..+...=|=...+...-.+.+|++
T Consensus       331 ~~~~L~~~~~~~s~~~p~~~~~~gy~~~~~~~~~~f~~~~~~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (409)
T 3jzl_A          331 FAQAIQAASPVNAHVLPIGAYMPGYEDDVIMAAGTFIQGASLELT----ADGPIREPYQLYVQGGLTYEHIKIAVTRAIQ  406 (409)
T ss_dssp             HHHHHHHTSSSSTTSCCCCBCCTTCSSCEEEECCCSSTTCSSSCE----EEEESSTTTEEEEECCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcccccCCCCCCCCCCCCCceeEeccccCCCcceeec----CCCCCCCCeEEEEcCCccHHHHHHHHHHHHH
Confidence            99999998766554        35554442211 1   1222232    3345678889999999999998888888887


Q ss_pred             c
Q 027424          220 T  220 (223)
Q Consensus       220 ~  220 (223)
                      +
T Consensus       407 ~  407 (409)
T 3jzl_A          407 K  407 (409)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.70  E-value=4.3e-17  Score=148.76  Aligned_cols=148  Identities=16%  Similarity=0.116  Sum_probs=120.3

Q ss_pred             Cccc--cCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh--cCCCCCh-
Q 027424            1 MAHA--HGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAP-   74 (223)
Q Consensus         1 ia~~--~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~--~g~~~sp-   74 (223)
                      +|++  +|++++||++++.+. ..+|+++|+|+++.|++|+++||....||+++++ +++.++++.....  .|...+| 
T Consensus       194 la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~~~~  272 (431)
T 3ht4_A          194 FVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGK-EQYVEACAYRLTSPGIGAEAGAS  272 (431)
T ss_dssp             HHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTTTSCSCC
T ss_pred             HHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCceEEEEec-HHHHHHHHHHhccCCcccccCcc
Confidence            3678  999999999998886 4789999999999999999999988889988775 5677776654433  2333333 


Q ss_pred             -HhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHH
Q 027424           75 -FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  153 (223)
Q Consensus        75 -~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~  153 (223)
                       ..+++++++++++..|++++.+|+..++++|++++.  +| ||+ +++|.          .+-+++|++++.+.+.+|+
T Consensus       273 ~~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~L~~~g~--~v-~p~-~~~~~----------~~li~~i~l~~~~~~~~~~  338 (431)
T 3ht4_A          273 LYSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGM--NT-SPA-WNAPR----------TDLIQSVQFDDKDRMIAFC  338 (431)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CE-ESC-TTSCC----------SSSCCEEECCCHHHHHHHH
T ss_pred             HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHhCcC--Ee-cCC-CCCCC----------ccEEEEEEeCCHHHHHHHH
Confidence             337889999999999999999999999999999985  67 887 66554          3559999998888999999


Q ss_pred             hhcCcceecc
Q 027424          154 ETTKYFSITV  163 (223)
Q Consensus       154 ~~l~l~~~~~  163 (223)
                      +.++.+....
T Consensus       339 ~~l~~~~~~~  348 (431)
T 3ht4_A          339 QAIQYASPIN  348 (431)
T ss_dssp             HHHHHTSSSS
T ss_pred             HHHHhcCccc
Confidence            9998775433

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.29  E-value=1.9e-11  Score=108.92  Aligned_cols=107  Identities=13%  Similarity=0.089  Sum_probs=85.4

Q ss_pred             CccccCCEEEEecCCCCC--CCcCcc-cCCCcEEEecc--cccccCCcccceeEEEecChhHHHHHHHHHHh--------
Q 027424            1 MAHAHGALLLVDNSIMSP--VLSRPL-ELGADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~--~~~~pl-~~GADivv~S~--tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~--------   67 (223)
                      +|+ +|++|++|++++-+  +..+++ ..++|+++.|+  ||++++ +  .||+++.+++++.++++.++..        
T Consensus       151 la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~  226 (377)
T 3ju7_A          151 LEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGI-G--EGGLIYSKNEEDIQRIKRMGNFGFDTNREC  226 (377)
T ss_dssp             HHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCC-B--SCEEEEESCHHHHHHHHHHTBTTBCTTSCB
T ss_pred             HHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCC-C--CcEEEEECCHHHHHHHHHHHhcCCCCCCce
Confidence            478 99999999997544  333344 33489999995  799997 4  5888888888888777665431        


Q ss_pred             ----cCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           68 ----EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        68 ----~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                          .+..+++..+++.+..++++..++++..+|+..++++|+++|.+
T Consensus       227 ~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~  274 (377)
T 3ju7_A          227 TMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLM  274 (377)
T ss_dssp             CSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             eeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence                23458899999999999999999999999999999999999865

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.24  E-value=4.7e-10  Score=96.97  Aligned_cols=178  Identities=15%  Similarity=0.122  Sum_probs=107.2

Q ss_pred             Ccccc-CCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-------------
Q 027424            1 MAHAH-GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-------------   66 (223)
Q Consensus         1 ia~~~-g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-------------   66 (223)
                      +|+++ |+++++|++++.+...-++.. +|+++.|.||+++|+..  .|+++.+ +++.+++.....             
T Consensus       155 la~~~p~~~li~D~a~~~~~~~~~~~~-~d~~~~s~~K~~~~~~G--~g~~~~~-~~~~~~~~~~~~gg~~~~~~~~~~~  230 (362)
T 3ffr_A          155 FRDKNKDALIFVDAVSSLPYPKFDWTK-IDSVFFSVQKCFGLPAG--LGVWILN-DRVIEKSKALLAKRKSIGTYHTIPS  230 (362)
T ss_dssp             SGGGSTTSEEEEECTTTTTSSCCCTTS-CSEEEEETTSTTCCCSC--CEEEEEE-HHHHHHHHHHHHTTCCCCSTTSHHH
T ss_pred             HHHhCCCCEEEEecccccCCcccChhH-CcEEEEecccccCCCCc--eEEEEEC-HHHHHHhhhccccCCCCcccccHHH
Confidence            58999 999999999865432222222 89999999999995432  3556554 455555544332             


Q ss_pred             --------hcCCCCChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           67 --------AEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        67 --------~~g~~~sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                              ....+.++...+.+..+++.     +..+.++..+++..+.+.|+++|.+ ++..|.    +.        .
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~----~~--------~  297 (362)
T 3ffr_A          231 MLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVF-SFGVED----AK--------L  297 (362)
T ss_dssp             HHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSE-EESSSC----GG--------G
T ss_pred             HHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCc-eeccCC----hh--------h
Confidence                    00223444444444455553     4566788899999999999999876 333221    10        1


Q ss_pred             CCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHH
Q 027424          134 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  213 (223)
Q Consensus       134 g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~d  213 (223)
                      ..+.+++|.+.+  ...+|.+.|.--.+.++-|.      .+                 ..++.||||+|....++-++.
T Consensus       298 ~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g~------~~-----------------~~~~~iRis~~~~~~~e~i~~  352 (362)
T 3ffr_A          298 RSMTTIVANTTM--LPGEINKILEPFDMAVGAGY------GS-----------------KKETQIRIANFPAHSLEQVHK  352 (362)
T ss_dssp             BCSSEEEEEESS--CHHHHHHHHGGGTEEEEECS------GG-----------------GTTTEEEEECCTTSCHHHHHH
T ss_pred             cCCceEEEecCC--CHHHHHHHHHHCCeEEecCc------cc-----------------cCCCEEEEECCCCCCHHHHHH
Confidence            246788888854  33444444432222222120      00                 135789999998766666666


Q ss_pred             HHHHHhc
Q 027424          214 LDKALRT  220 (223)
Q Consensus       214 l~~Al~~  220 (223)
                      +.++|+.
T Consensus       353 l~~~l~~  359 (362)
T 3ffr_A          353 LVQTLKE  359 (362)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666653

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.24  E-value=1.3e-10  Score=101.00  Aligned_cols=175  Identities=13%  Similarity=0.099  Sum_probs=109.5

Q ss_pred             CccccCCEEEEecCCCCCCC---cCcccC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL---SRPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~---~~pl~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|++++....   ..++..    +..+++.|++|.++..+..+|. ++..++++.+.+......  .+.+
T Consensus       172 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~-~~~~~~~~~~~~~~~~~~--~~~~  248 (361)
T 3ftb_A          172 LAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGY-GITNNKEIAAKIKAKQNP--WNIN  248 (361)
T ss_dssp             HHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEE-EEESCHHHHHHHHTTSCT--TCSC
T ss_pred             HhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeE-EEeCCHHHHHHHHhhCCC--CCCC
Confidence            36799999999999853222   233332    3458899999999766666554 544566676665543222  2456


Q ss_pred             hHhHHHHHhcHH---HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC--CHHH
Q 027424           74 PFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLAL  148 (223)
Q Consensus        74 p~da~ll~~~l~---tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~--~~~~  148 (223)
                      +...+.+...++   .+..+.++..++...+.+.|+++|.+..+..|                 .|+++.|.+.  +.+.
T Consensus       249 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~  311 (361)
T 3ftb_A          249 CFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP-----------------HANFVLCRLENISGEK  311 (361)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC-----------------SSSEEEEEESSSCHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC-----------------CCeEEEEEcCCCCHHH
Confidence            666666655554   35666788889999999999999887535433                 4667778874  2322


Q ss_pred             -HHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHHhc
Q 027424          149 -SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDKALRT  220 (223)
Q Consensus       149 -~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd-~~dL~~dl~~Al~~  220 (223)
                       .+++.++ ++.   ++-|....                     +..++.+|+|++.++ .++|++.|++.++.
T Consensus       312 l~~~l~~~-gi~---v~~g~~~~---------------------~~~~~~iRis~~~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          312 LYDSLLKE-DIV---IRRCCNFI---------------------GLDDSFVRFAIKDEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             HHHHHHTT-TEE---CEECTTST---------------------TCCTTEEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHC-CeE---EeeCccCC---------------------CCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence             2333332 332   12121100                     124688999999654 47788888776653

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.23  E-value=6.7e-12  Score=116.03  Aligned_cols=178  Identities=16%  Similarity=0.115  Sum_probs=106.2

Q ss_pred             cccc------CCEEEEecCCCCC---CCcCccc-----CCCcEEEecccccccCCcccceeEEEecChhHH-HHHHHHHH
Q 027424            2 AHAH------GALLLVDNSIMSP---VLSRPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQN   66 (223)
Q Consensus         2 a~~~------g~~lvVDnT~~s~---~~~~pl~-----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~-~~l~~~~~   66 (223)
                      |+++      |++++||++++..   +....+.     .|+|+++.|.|||+.++...  |++++++++.. +.+.....
T Consensus       228 a~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~--G~~~~~~~~~l~~~~~~~~~  305 (502)
T 3hbx_A          228 LVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGI--GWVIWRNKEDLPEELIFHIN  305 (502)
T ss_dssp             HHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSC--EEEEESSGGGSCGGGCEEEC
T ss_pred             HHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCe--EEEEEeCHHHhhHHhccCcc
Confidence            5666      9999999999732   2222222     38999999999999776543  55556654432 11111011


Q ss_pred             hcCCC---------C---ChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           67 AEGSG---------L---APFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        67 ~~g~~---------~---sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                      ++|..         .   .....|..++  +.+.+..++++..+++..++++|+++|.++- ..|+    |         
T Consensus       306 yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~-~~~~----~---------  371 (502)
T 3hbx_A          306 YLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNI-VSKD----E---------  371 (502)
T ss_dssp             SSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEE-CSCS----S---------
T ss_pred             cccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE-EeCC----C---------
Confidence            11111         1   1122333344  4566788999999999999999999997643 3331    1         


Q ss_pred             CCCCeeEEEEeCC-----HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----
Q 027424          133 KGAGSVLSFLTGS-----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----  203 (223)
Q Consensus       133 ~g~ggl~sf~~~~-----~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----  203 (223)
                        ..++++|.+.+     .....+.+..-+++-.+         ...|....              ....+|++|+    
T Consensus       372 --~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~---------~~~p~~~~--------------~~~~lRisv~~~~t  426 (502)
T 3hbx_A          372 --GVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPA---------YTMPPNAQ--------------HITVLRVVIREDFS  426 (502)
T ss_dssp             --SSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCE---------EECCTTCT--------------TCEEEEEECCTTCC
T ss_pred             --CceEEEEEecCCCcCCHHHHHHHHHhCCcEEee---------ccCCcccC--------------CceEEEEEeCCCCC
Confidence              34689998832     11233333332332100         01121100              2468999999    


Q ss_pred             CCCHHHHHHHHHHHHhc
Q 027424          204 IEDVNDLISDLDKALRT  220 (223)
Q Consensus       204 lEd~~dL~~dl~~Al~~  220 (223)
                      .||.++|+++|+++++.
T Consensus       427 ~edid~li~~L~~~l~~  443 (502)
T 3hbx_A          427 RTLAERLVIDIEKVMRE  443 (502)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            78899999999999863

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.19  E-value=2.4e-10  Score=99.82  Aligned_cols=176  Identities=17%  Similarity=0.183  Sum_probs=107.2

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHH----------------H
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY----------------F   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~----------------~   63 (223)
                      +|+++|+++++|++++.+.. .+..++|+|+++.|++|+++++..  .|++++++ ++.+++.                .
T Consensus       171 l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  247 (386)
T 2dr1_A          171 VAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPG--LAIGAFSE-RFLEIAEKMPERGWYFDIPLYVKY  247 (386)
T ss_dssp             HHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSS--CEEEEECH-HHHHHHTTCTTCCSTTCHHHHHHH
T ss_pred             HHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCc--eEEEEECH-HHHHHHhcCCCCceEEeHHHHHHh
Confidence            47899999999999865432 233346899999999999997632  47776654 5555441                1


Q ss_pred             HH--HhcCCCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCC
Q 027424           64 LQ--NAEGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  135 (223)
Q Consensus        64 ~~--~~~g~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~  135 (223)
                      ..  .....+.++...+.+...++.+      ..+.++..+++..+.+.|++. .+ ++..|     +.        ...
T Consensus       248 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~-----~~--------~~~  312 (386)
T 2dr1_A          248 LKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GL-DILAE-----PG--------HES  312 (386)
T ss_dssp             HHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TC-CBSSC-----TT--------CBC
T ss_pred             hccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eeCcC-----cc--------ccC
Confidence            11  1222245665565666666653      345677888899999999887 43 22222     00        015


Q ss_pred             CeeEEEEeCCHHHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHH
Q 027424          136 GSVLSFLTGSLALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVN  208 (223)
Q Consensus       136 ggl~sf~~~~~~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~  208 (223)
                      +.+++|.+.......+|.+.|   ++.   +.-|..      +                 ..++.+|||++.    |+.+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~l~~~gi~---v~~~~~------~-----------------~~~~~iRi~~~~~~~~~~i~  366 (386)
T 2dr1_A          313 PTITAVLTPPGIKGDEVYEAMRKRGFE---LAKGYG------S-----------------VKEKTFRIGHMGYMKFEDIQ  366 (386)
T ss_dssp             SSEEEEECCTTCCHHHHHHHHHHTTEE---CEECCG------G-----------------GTTTEEEEECCSSCCHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHCCeE---EecCcc------c-----------------cCCCEEEEECCCCCCHHHHH
Confidence            788889874211122333333   332   221210      0                 035689999995    5677


Q ss_pred             HHHHHHHHHHhc
Q 027424          209 DLISDLDKALRT  220 (223)
Q Consensus       209 dL~~dl~~Al~~  220 (223)
                      .+++.|+++++.
T Consensus       367 ~~~~~l~~~~~~  378 (386)
T 2dr1_A          367 EMLDNLREVINE  378 (386)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            778888777763

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.16  E-value=7.6e-10  Score=97.73  Aligned_cols=178  Identities=14%  Similarity=0.157  Sum_probs=111.8

Q ss_pred             CccccCCEEEEecCCCCCCCc---------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--HhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~---------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--~~~g   69 (223)
                      +|+++|+++|+|++++.++..         -.+..++|+++.|++|+++|..   ||+++++ +++.+.+....  ....
T Consensus       202 l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~---gG~~~~~-~~~~~~l~~~~~~~~~~  277 (401)
T 1fc4_A          202 LADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGYTAAR-KEVVEWLRQRSRPYLFS  277 (401)
T ss_dssp             HHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEEEEEC-HHHHHHHHHHCHHHHHS
T ss_pred             HHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCC---CEEEEcC-HHHHHHHHHhCcCceeC
Confidence            478999999999999755431         1123368999999999995432   5878764 56666665432  1224


Q ss_pred             CCCChHhHHHHHhcHHHHH---HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl~---~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      .+.++...+.+...++.+.   .+.++..++...+.+.|++. .+. +. |                +.|+++.|++.+.
T Consensus       278 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-~----------------~~~~~~~~~~~~~  338 (401)
T 1fc4_A          278 NSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFT-LA-G----------------ADHAIIPVMLGDA  338 (401)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCC-BC-C----------------SSSSEEEEEEECH
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCc-cc-C----------------CCCCEEEEEcCCh
Confidence            4678887888888888763   56688888999999999887 332 21 3                2578888888543


Q ss_pred             HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhcC
Q 027424          147 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE----DVNDLISDLDKALRTG  221 (223)
Q Consensus       147 ~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE----d~~dL~~dl~~Al~~~  221 (223)
                      ....+|.+.|.--.+.+.-|...            ..+        -.++.+|||++..    +.+.+++.|+++++..
T Consensus       339 ~~~~~l~~~l~~~gi~v~~~~~~------------~~~--------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  397 (401)
T 1fc4_A          339 VVAQKFARELQKEGIYVTGFFYP------------VVP--------KGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             HHHHHHHHHHHHTTEECCEECTT------------SSC--------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCcEEeeecCC------------CCC--------CCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            34445554442111212212111            000        0246899999943    4566677777776643

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.16  E-value=6.8e-10  Score=97.41  Aligned_cols=198  Identities=12%  Similarity=0.073  Sum_probs=121.9

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCC--cEEEecc--cccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GA--Divv~S~--tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|+++|+|++++.+...+.-..|.  |+++.|+  +|.+++.++  +|+++.+++++.++++..+..         
T Consensus       145 la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~  222 (367)
T 3nyt_A          145 IASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHI  222 (367)
T ss_dssp             HHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEEC
T ss_pred             HHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceee
Confidence            4789999999999986544334334444  9999996  999998665  888888777777776654321         


Q ss_pred             ---cCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           68 ---EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        68 ---~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                         ....+++..+.+.+..++.+..+.++..+++..+.+.|++.+ +   ..|..+...         .....++.+.+.
T Consensus       223 ~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~-~---~~~~~~~~~---------~~~~~~~~~~~~  289 (367)
T 3nyt_A          223 RVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVG-I---GTPFIEVNN---------ISVYAQYTVRMD  289 (367)
T ss_dssp             SCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT-C---CCCCCCTTE---------ECCCSSEEEECS
T ss_pred             ccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-e---eccCCCCCC---------ceeeEEEEEEeC
Confidence               134578888888888899888888999999999999999875 2   123211110         012234555555


Q ss_pred             CHHHHHHHHhhcCcceeccccCCCCCCCCCCccc-cCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          145 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFM-SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       145 ~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~-~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      +.+...+.+..-++. ..+.+.  ..+-..|... ....++..++.    ....|||+++-.-.++=++.+.+++++
T Consensus       290 ~~~~l~~~L~~~GI~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~l~lp~~~~~t~~~i~~v~~~~~~  359 (367)
T 3nyt_A          290 NRESVQASLKAAGVP-TAVHYP--IPLNKQPAVADEKAKLPVGDKA----ATQVMSLPMHPYLDTASIKIICAALTN  359 (367)
T ss_dssp             SHHHHHHHHHHHTCC-CBCSCS--SCGGGSGGGCCTTCCCHHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHCCCc-eeccCC--CccccChhhhccCCCChHHHHH----HhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence            555555555544443 222222  1111122221 12223222221    346799999977665556666666654

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.16  E-value=3.3e-10  Score=98.76  Aligned_cols=178  Identities=15%  Similarity=0.125  Sum_probs=104.7

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHH-------------HHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-------------YFLQN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l-------------~~~~~   66 (223)
                      +|+++|+++|+|++++.+.. ...-++|+|+++.|++|+++|...  .|++++++ ++.+++             ..+..
T Consensus       152 l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  228 (384)
T 3zrp_A          152 KIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAG--LGLLLLSP-KALSILDSQNSIAGYYLDLRNWLP  228 (384)
T ss_dssp             HHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSS--EEEEEECH-HHHHHHHHCCCSCCSTTCHHHHHH
T ss_pred             HHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCc--eEEEEECH-HHHHHhcCCCCCCcccccHHHHHH
Confidence            47999999999999875543 233346899999999999976532  56666654 454544             22211


Q ss_pred             ---h----cC---CCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhh
Q 027424           67 ---A----EG---SGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  131 (223)
Q Consensus        67 ---~----~g---~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~  131 (223)
                         .    .+   .+.++.....+..+++.+     ..+.++..+++..+.+.|+++ .+ ++..|.    +        
T Consensus       229 ~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~----~--------  294 (384)
T 3zrp_A          229 VMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GL-EIVARR----P--------  294 (384)
T ss_dssp             HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CBSCSS----G--------
T ss_pred             HHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CC-eEccCc----c--------
Confidence               1    00   134554444455566543     344577778888888999887 43 222221    0        


Q ss_pred             hCCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCH
Q 027424          132 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDV  207 (223)
Q Consensus       132 ~~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~  207 (223)
                      ....+.++.|.+.+ ....+|.+.+.--.+.++-|.            +..           . +.+|||++    .||.
T Consensus       295 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~------------~~~-----------~-~~iRi~~~~~~~~e~i  349 (384)
T 3zrp_A          295 ESYSNTVTGVILKV-ADPQKVLAGTVNEGVEFAPGV------------HPA-----------F-KYFRIGHMGWVTPNDA  349 (384)
T ss_dssp             GGBCSSEEEEECSS-SCHHHHHHHHHTTTCCCEECC------------CTT-----------C-CEEEEECCSSCCHHHH
T ss_pred             cccCccEEEEECCC-CCHHHHHHHHHHCCEEEecCC------------CCC-----------c-CEEEEeccccCCHHHH
Confidence            12256788888743 122333333321111122221            000           0 78999999    5678


Q ss_pred             HHHHHHHHHHHhc
Q 027424          208 NDLISDLDKALRT  220 (223)
Q Consensus       208 ~dL~~dl~~Al~~  220 (223)
                      +.+++.|+++++.
T Consensus       350 ~~~~~~l~~~l~~  362 (384)
T 3zrp_A          350 IIAISVIERTLRK  362 (384)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888888864

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.15  E-value=2.4e-10  Score=100.07  Aligned_cols=109  Identities=15%  Similarity=0.096  Sum_probs=76.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCccc-----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~-----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|++++..... ++.     .+.++++.|++|.++.++..+|. +++ ++++.+.+.......+.+.++.
T Consensus       182 la~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~-v~~-~~~l~~~~~~~~~~~~~~~~~~  258 (375)
T 3op7_A          182 IASEVGAYILSDEVYRSFSEL-DVPSIIEVYDKGIAVNSLSKTYSLPGIRIGW-VAA-NHQVTDILRDYRDYTMICAGVF  258 (375)
T ss_dssp             HHHTTTCEEEEECCSCCCSSS-CCCCHHHHCTTEEEEEESSSSSSCGGGCCEE-EEC-CHHHHHHHTTTGGGTTSCCCHH
T ss_pred             HHHHcCCEEEEEccccccccc-CCCchhhhcCCEEEEeEChhhcCCcccceEE-EEe-CHHHHHHHHHHHhhhccCCCcH
Confidence            478999999999998653221 111     34569999999999866765554 545 6677777765555555566787


Q ss_pred             hHHHHHhcHHHHHHH----HHHHHhHHHHHHHHHhcCCCee
Q 027424           76 DCWICLRGVKTMALR----VEKQQDNAQKIAEFLASHPRVK  112 (223)
Q Consensus        76 da~ll~~~l~tl~~R----~~~~~~na~~la~~L~~~p~v~  112 (223)
                      ..+.+...++.....    .++..+++..+.++|+++|.+.
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  299 (375)
T 3op7_A          259 DDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVS  299 (375)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence            777777777654322    3445788899999999988773

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.14  E-value=6.3e-10  Score=98.25  Aligned_cols=186  Identities=16%  Similarity=0.153  Sum_probs=107.0

Q ss_pred             CccccCCEEEEecCCCCCCCc-CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA------------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~------------   67 (223)
                      +|+++|+++|+|++++.+... +.-++|+|+++.|++|.+++.+   +|+++++ +++.+++......            
T Consensus       194 l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  269 (420)
T 1t3i_A          194 LAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG---IGFLYGK-EEILEAMPPFFGGGEMIAEVFFDHF  269 (420)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT---CEEEEEC-HHHHHHSCCCSCSTTSEEEECSSCE
T ss_pred             HHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCc---eEEEEEc-hHHHhhcCceecCCCcccccccccc
Confidence            478999999999998755432 3334689999999999887655   6777665 4555544322110            


Q ss_pred             --------cCCCCChHhHHHHHh-cHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           68 --------EGSGLAPFDCWICLR-GVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        68 --------~g~~~sp~da~ll~~-~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                              +....++..+...+. +++.+     ..+.++..+++..+.+.|++.|.+ ++..|..+.           .
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~~~-----------~  337 (420)
T 1t3i_A          270 TTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQL-RLYGPNPKH-----------G  337 (420)
T ss_dssp             EECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTE-EEESCCGGG-----------S
T ss_pred             CCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCe-EEeCCCccc-----------c
Confidence                    111234444444333 45543     345577788999999999998876 455442100           0


Q ss_pred             CCCeeEEEEeCC--HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC----CH
Q 027424          134 GAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE----DV  207 (223)
Q Consensus       134 g~ggl~sf~~~~--~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE----d~  207 (223)
                      +.|+++.|.+.+  .+...+.+..-++.   +.-|..      +.        .......|. ++.+|||++..    |.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~---v~~~~~------~~--------~~~~~~~g~-~~~iRis~~~~~~~~~i  399 (420)
T 1t3i_A          338 DRAALASFNVAGLHASDVATMVDQDGIA---IRSGHH------CT--------QPLHRLFDA-SGSARASLYFYNTKEEI  399 (420)
T ss_dssp             CBCSEEEEEETTBCHHHHHHHHHTTTEE---CBCSCT------TC--------HHHHHHTTC-CCCEEEECCTTCCHHHH
T ss_pred             ccCCEEEEEECCCCHHHHHHHHHHCCeE---Eeeccc------cc--------hHHHHhcCC-CCeEEEecCCCCCHHHH
Confidence            358899998842  23232333332322   222211      10        111112332 67899999974    45


Q ss_pred             HHHHHHHHHHHhc
Q 027424          208 NDLISDLDKALRT  220 (223)
Q Consensus       208 ~dL~~dl~~Al~~  220 (223)
                      +.+++-|+++++.
T Consensus       400 ~~~~~~l~~~~~~  412 (420)
T 1t3i_A          400 DLFLQSLQATIRF  412 (420)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5566666666543

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.14  E-value=5e-10  Score=98.14  Aligned_cols=110  Identities=16%  Similarity=0.110  Sum_probs=75.2

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCC---Cc--EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC-
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELG---AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~G---AD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g-   69 (223)
                      +|+++|+++|+|++++....     .....++   .|  +++.|++|.++..+..+ |+++++++++.+.+.......+ 
T Consensus       188 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~  266 (391)
T 3dzz_A          188 LCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA-ACAIIPNPDLRARAEESFFLAGI  266 (391)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCC-EEEECCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhh-eEEEECCHHHHHHHHHHHHhhcc
Confidence            47899999999999863221     1122233   67  99999999997566555 5565655677777765543333 


Q ss_pred             CCCChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhc-CCCe
Q 027424           70 SGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRV  111 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~-~p~v  111 (223)
                      .+.++...+.+...++.    +..+.++..+++..+.+.|++ .|.+
T Consensus       267 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  313 (391)
T 3dzz_A          267 GEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEV  313 (391)
T ss_dssp             SSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            24566656666666655    556667888899999999998 6776

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.14  E-value=4.4e-10  Score=98.12  Aligned_cols=172  Identities=16%  Similarity=0.182  Sum_probs=106.1

Q ss_pred             Ccccc--CCEEEEecCCCCCCCcCc----ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAH--GALLLVDNSIMSPVLSRP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~--g~~lvVDnT~~s~~~~~p----l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++  |+++|+|++++......+    -..+.++++.|++|+ +..+..+ |+++. ++++.+.+.....  ....++
T Consensus       185 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~-G~~~~-~~~~~~~~~~~~~--~~~~~~  259 (367)
T 3euc_A          185 AAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRL-GYVAG-DPQWLEQLDKVRP--PYNVNV  259 (367)
T ss_dssp             HTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCE-EEEEE-CHHHHHHHGGGCC--SSCCCH
T ss_pred             hhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCc-eeeee-CHHHHHHHHHhCC--CCCCCH
Confidence            37889  999999999864322121    123556999999999 6555444 55655 4556555543322  223567


Q ss_pred             HhHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHH
Q 027424           75 FDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH  151 (223)
Q Consensus        75 ~da~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~  151 (223)
                      ...+.+...++.   +..+.++..++...+.+.|+++|.+. + +|+                .|..+.+.+.+.+...+
T Consensus       260 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~~~----------------~~~~~~~~~~~~~~l~~  321 (367)
T 3euc_A          260 LTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVT-V-FPS----------------AANFLLARVPDAAQTFD  321 (367)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCE-E-CCC----------------SSSEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCC----------------CCeEEEEECCCHHHHHH
Confidence            666666666554   56667888899999999999998875 3 441                35566677753333333


Q ss_pred             HHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 027424          152 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  219 (223)
Q Consensus       152 f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-Ed~~dL~~dl~~Al~  219 (223)
                      .+..-++.   ++-|+...                     +..++.+|||+|- ||.+.+++.|+++++
T Consensus       322 ~l~~~gi~---v~~~~~~~---------------------~~~~~~iRis~~~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          322 RLLARKVL---IKNVSKMH---------------------PLLANCLRVTVSTPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             HHHTTTEE---CEECGGGC---------------------GGGTTEEEEECCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCeE---EEECCccC---------------------CCCCCEEEEecCCHHHHHHHHHHHHHHhc
Confidence            33333332   22121100                     1135789999995 457777888877764

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.12  E-value=1.3e-09  Score=95.65  Aligned_cols=199  Identities=14%  Similarity=0.110  Sum_probs=118.5

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCC--CcEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHhc--------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--------   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~G--ADivv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~--------   68 (223)
                      +|+++|+++++|++++.+...+.-..|  +|+++.|++  |.++|++.  ||+++.+++++.++++......        
T Consensus       146 l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~  223 (373)
T 3frk_A          146 IAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYHHI  223 (373)
T ss_dssp             HHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTBCC
T ss_pred             HHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCCCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCccc
Confidence            478999999999998755433433445  899999955  99997654  8888888777777666544311        


Q ss_pred             ----CCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           69 ----GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        69 ----g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                          ...+++..+.+.+..++.+..+.++..+++..+.+.|++.+ + .  .|..+...         ...--.+.+...
T Consensus       224 ~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~--~~~~~~~~---------~~~~~~~~~~~~  290 (373)
T 3frk_A          224 YKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-V-I--IPVEADYA---------KHVWYTFVIRSE  290 (373)
T ss_dssp             SCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-E-E--CCCCCTTE---------ECCCSSEEEEES
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-e-E--eccCCCCC---------ceeeEEEEEEeC
Confidence                12257777777777777788888888999999999998877 3 2  34322110         011123444444


Q ss_pred             CHHHHHHHHhhcCcceeccccCCCCCCCCCCcccc--C--CCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          145 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS--H--ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       145 ~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~--h--~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      +.+...+.+..-++. ..+.+  ...+-+.|....  +  ..++..++.    ..+.||||++....++=++.+.++|+.
T Consensus       291 ~~~~l~~~L~~~gI~-v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~~~~t~~di~~~~~~l~~  363 (373)
T 3frk_A          291 KRDELQKYLNNNGIG-TLIHY--PIPIHLQQAYKDLGFKTGNFPIAEKI----ANEILSIPIWYGMKNEEIEYVIDKINA  363 (373)
T ss_dssp             SHHHHHHHHHHTTBC-CBCSC--SSCGGGSGGGGGGCCCTTSSHHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHCCCC-cccCc--CCccccChHHHhcCCCCCCCHHHHHH----HhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence            444444445444443 22222  111111222111  0  011111111    236899999988766666667777765


Q ss_pred             C
Q 027424          221 G  221 (223)
Q Consensus       221 ~  221 (223)
                      .
T Consensus       364 ~  364 (373)
T 3frk_A          364 W  364 (373)
T ss_dssp             C
T ss_pred             H
Confidence            4

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.12  E-value=4.3e-10  Score=98.34  Aligned_cols=174  Identities=14%  Similarity=0.150  Sum_probs=106.1

Q ss_pred             CccccCCEEEEecCCCCCCC--cCccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVL--SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~--~~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|++++....  ..+++    .+.|+++.|++|+++..+..+ |++++.++++.+.+.....  ..+.++
T Consensus       174 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~~--~~~~~~  250 (364)
T 1lc5_A          174 RCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRL-GYLVNSDDAAMARMRRQQM--PWSVNA  250 (364)
T ss_dssp             HHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCC-EEEECCCHHHHHHHHHHSC--TTCSCH
T ss_pred             HhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccce-EEEEECCHHHHHHHHHhCC--CCCCCH
Confidence            37889999999999854321  12222    468999999999998666555 5565245567666654432  234677


Q ss_pred             HhHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH--HHH
Q 027424           75 FDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALS  149 (223)
Q Consensus        75 ~da~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~--~~~  149 (223)
                      ...+.+.+.|+.   +..+.++..++...+.+.|+++|.+. + +|+                .|+.+.+++.+.  +..
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~----------------~g~~~~~~~~~~~~~l~  312 (364)
T 1lc5_A          251 LAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT-V-YPG----------------RANYLLLRCEREDIDLQ  312 (364)
T ss_dssp             HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE-E-CCC----------------SSSEEEEEESCTTCCHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCE-E-CCC----------------CCeEEEEECCCcHHHHH
Confidence            777777777654   44555677788889999999888763 3 341                356677777421  222


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHhc
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-DVNDLISDLDKALRT  220 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE-d~~dL~~dl~~Al~~  220 (223)
                      +++.++ ++.   +.-|....                     +..++.+|||++-+ +.+.|++-|++.++.
T Consensus       313 ~~l~~~-gi~---v~~g~~~~---------------------~~~~~~iRis~~~~~~~~~l~~~l~~~~~~  359 (364)
T 1lc5_A          313 RRLLTQ-RIL---IRSCANYP---------------------GLDSRYYRVAIRSAAQNERLLAALRNVLTG  359 (364)
T ss_dssp             HHHHTT-TEE---CEECTTST---------------------TCCTTEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHC-CcE---EeeCcccC---------------------CCCCCEEEEEeCCHHHHHHHHHHHHHHhhc
Confidence            333222 332   11111100                     11357899999953 456677777776653

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.12  E-value=1e-10  Score=101.57  Aligned_cols=191  Identities=16%  Similarity=0.133  Sum_probs=105.8

Q ss_pred             CccccCCEEEEecCCCCCCCc-CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH----HHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF----LQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~----~~~~~g~~~sp~   75 (223)
                      +|+++|+ +++|++++.+... ..-..|+|+++.|+||++++.+  + |+++++++........    .......+.++.
T Consensus       163 l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (382)
T 4hvk_A          163 VLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEAKLQPVILGGGQENGLRSGSENVP  238 (382)
T ss_dssp             HHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTT--C-EEEEEETTCCCCCSSCSSCTGGGTSCSCCCHH
T ss_pred             HHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCc--e-EEEEEcCccCcCcccccCCCcCccccCCcCHH
Confidence            4789999 9999998765432 2223589999999999876544  3 4455554321000000    001112234554


Q ss_pred             hHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC--CHHHH
Q 027424           76 DCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALS  149 (223)
Q Consensus        76 da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~--~~~~~  149 (223)
                      ..+.+..+++.+    ..+.++..+++..+.+.|++.|.+ ++..|.             ..+.++++.|.+.  +.+..
T Consensus       239 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  304 (382)
T 4hvk_A          239 SIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEES-YLNGHP-------------EKRLPNNVNVRFSYIEGESI  304 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTE-EECSCS-------------SSBCTTEEEEEETTCCHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCe-EEeCCc-------------cccCCCEEEEEECCCCHHHH
Confidence            455555555543    344567777888888888888876 344331             1224568888873  33333


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC----CCeEEEEec----CCCHHHHHHHHHHHHhc
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVG----IEDVNDLISDLDKALRT  220 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~----~~liRlsvG----lEd~~dL~~dl~~Al~~  220 (223)
                      .+.+..-+   +.++.|...+....        .+.......|++    ++.||||+|    .||.+.+++.|+++++.
T Consensus       305 ~~~l~~~g---i~v~~g~~~~~~~~--------~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~  372 (382)
T 4hvk_A          305 VLSLDMAG---IQASTGSACSSKTL--------QPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             HHHHHHTT---CBCBCC----------------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCC---EEEeeCCccCCCCC--------cchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            33333333   33444433221100        011122344544    689999999    46678888888887763

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.12  E-value=7.9e-10  Score=97.11  Aligned_cols=179  Identities=15%  Similarity=0.164  Sum_probs=110.6

Q ss_pred             CccccCCEEEEecCCCCCCCcC---c-cc-----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-H-hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR---P-LE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-N-AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~---p-l~-----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~-~~g   69 (223)
                      +|+++|+++|+|++++..+...   + ++     .+.|+++.|++|.++|.   .||+++.+ +++.+.+.... . ...
T Consensus       200 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~---~gG~~~~~-~~~~~~~~~~~~~~~~~  275 (399)
T 3tqx_A          200 LADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGA---SGGYTSGH-KEIIEWLRNRSRPYLFS  275 (399)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSS---CCEEEEEC-HHHHHHHHHHCHHHHSS
T ss_pred             HHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccC---ceEEEEcC-HHHHHHHHHhCcceecc
Confidence            4789999999999996544211   1 11     26799999999999953   35877665 45666665431 1 234


Q ss_pred             CCCChHhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           70 SGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      .+.++..+..+...++.+    ....++..++...+.+.|++.. + ++. |                ..|+++.|.+.+
T Consensus       276 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~-~----------------~~~~~~~~~~~~  336 (399)
T 3tqx_A          276 NTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLG-F-QLV-P----------------GNHPIIPVMLGD  336 (399)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-C-CBC-C----------------CSSSEEEEEEEC
T ss_pred             CCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-C-CcC-C----------------CCCCEEEEEeCC
Confidence            467777777777777765    3445777888888888888762 2 111 1                257788888855


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhcC
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRTG  221 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al~~~  221 (223)
                      .....+|.+.|.--.+.+.-+.      .|.      .        .-.++.+|||++    .|+.+.+++.|+++++..
T Consensus       337 ~~~~~~~~~~l~~~gi~v~~~~------~~~------~--------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          337 AQLATNMADHLLQEGIYVVGFS------YPV------V--------PMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             HHHHHHHHHHHHHTTEECCEEC------TTT------S--------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEeeeC------CCC------C--------CCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence            4444555544421111111110      010      0        013468999997    345677788888887754


Q ss_pred             C
Q 027424          222 P  222 (223)
Q Consensus       222 ~  222 (223)
                      .
T Consensus       397 ~  397 (399)
T 3tqx_A          397 G  397 (399)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.11  E-value=2.5e-10  Score=101.34  Aligned_cols=191  Identities=19%  Similarity=0.184  Sum_probs=108.9

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-------HhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-------~~~g~~~   72 (223)
                      +|+++|++||+|++++.+.. .....+|+|+++.|++|.+++.+   .|+++++++.. +.+....       .....+.
T Consensus       188 l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g---~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  263 (423)
T 3lvm_A          188 MCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG---IGALYVRRKPR-VRIEAQMHGGGHERGMRSGTL  263 (423)
T ss_dssp             HHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSS---CEEEEECBTTB-CCCCCSSCSSCTTTTTCCSCC
T ss_pred             HHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCC---eEEEEEecccc-CCCCccccCCcccccccCCCC
Confidence            47899999999999876644 44456789999999999887655   45565654322 2221110       0111233


Q ss_pred             ChHhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHH
Q 027424           73 APFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL  148 (223)
Q Consensus        73 sp~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~  148 (223)
                      ++.....+...++.+    ....++..+++..+.+.|++.|.+. +.-|.             ....++++.|.+.+. .
T Consensus       264 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~-~  328 (423)
T 3lvm_A          264 PVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVY-LNGDL-------------EHGAPNILNVSFNYV-E  328 (423)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-EESCS-------------TTBCTTEEEEEETTS-C
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCc-------------cccCCCeEEEEeCCC-C
Confidence            444444444455443    4445777888888999998888763 33221             012467888887321 1


Q ss_pred             HHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC----CCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          149 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       149 ~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~----~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      ...+.+.+.-  +.++-|...+    +.   +. .+.......|++    ++.||||++.    ||.+.+++.|+++++.
T Consensus       329 ~~~l~~~l~~--i~v~~g~~~~----~~---~~-~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~  398 (423)
T 3lvm_A          329 GESLIMALKD--LAVSSGSACT----SA---SL-EPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR  398 (423)
T ss_dssp             HHHHHHHTTT--EECBCCCC------------C-CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh--heeccCcccc----CC---Cc-cccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            2334444433  3334342211    10   00 001122345555    4899999994    5677778888777753

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.11  E-value=1e-09  Score=98.60  Aligned_cols=178  Identities=15%  Similarity=0.179  Sum_probs=110.8

Q ss_pred             CccccCCEEEEecCCCCCCCc---------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-H-HhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-Q-NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~---------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-~-~~~g   69 (223)
                      +|+++|+++|+|++++.....         -.+..++|+++.|++|.++..    ||++++++ ++.+.+... + ...+
T Consensus       219 l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~----gG~v~~~~-~l~~~l~~~~~~~~~~  293 (427)
T 2w8t_A          219 VAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTV----GGFVVSNH-PKFEAVRLACRPYIFT  293 (427)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSC----CEEEEECC-TTGGGGGGTCHHHHSS
T ss_pred             HHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccC----CCEEEeCH-HHHHHHHHhccccccc
Confidence            478999999999998765432         112336899999999999743    58887765 454444322 1 1234


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      .+.+|..+..+...++.+   ..+.++..++...+.+.|++. ++ .+..|+               +.|+++.|.+++.
T Consensus       294 ~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~---------------~~~~~~~~~~~~~  356 (427)
T 2w8t_A          294 ASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GF-RLGTET---------------CDSAIVAVMLEDQ  356 (427)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TC-EESCSS---------------CCSSEEEEEESSH
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CC-cccCCC---------------CCCCEEEEEECCH
Confidence            467787666666777776   566788888999999999876 33 222121               1467899998654


Q ss_pred             HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          147 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       147 ~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      ....+|.+.|.--.+.+.-|..      |.      .+        -..+.+|||++.    |+.+.+++-|+++++.
T Consensus       357 ~~~~~l~~~L~~~Gi~v~~~~~------~~------~~--------~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~  414 (427)
T 2w8t_A          357 EQAAMMWQALLDGGLYVNMARP------PA------TP--------AGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA  414 (427)
T ss_dssp             HHHHHHHHHHHHTTEECEEECT------TT------SC--------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCeEEeeeCC------CC------CC--------CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            4455555544211111111111      10      00        024689999997    4566677777776653

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.11  E-value=4.2e-10  Score=97.77  Aligned_cols=108  Identities=19%  Similarity=0.103  Sum_probs=74.5

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC--
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~--   72 (223)
                      +|+++|++|++|+++.-.      ....++..++|+++.|+||+++|+   .||+++ .++++.++++..+...+..+  
T Consensus       166 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~---~gg~~~-~~~~l~~~~~~~~~~~~~~~~~  241 (359)
T 3pj0_A          166 YCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGI---AGAILA-GNDDFVQEAKIWKRRYGGDLIS  241 (359)
T ss_dssp             HHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCS---SCEEEE-ECHHHHHHHHHHHHHTTCCCSC
T ss_pred             HHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCc---ceEEEE-CCHHHHHHHHHHHHHhCCCcch
Confidence            478999999999986421      112234457899999999999876   456664 45677777776555554332  


Q ss_pred             ChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCee
Q 027424           73 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  112 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~  112 (223)
                      ...-+......++....++++..+++..+.+.|++.|.+.
T Consensus       242 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~  281 (359)
T 3pj0_A          242 LYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVK  281 (359)
T ss_dssp             CHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCce
Confidence            2222222334666666778888999999999999998873

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.09  E-value=3.4e-10  Score=98.33  Aligned_cols=170  Identities=13%  Similarity=0.064  Sum_probs=106.2

Q ss_pred             CEEEEecCCCCCCCcCc-----c-cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            7 ALLLVDNSIMSPVLSRP-----L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         7 ~~lvVDnT~~s~~~~~p-----l-~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      .+||+|++++......+     + ..+.++++.|++|+++..+..+|. ++. ++++.+.+.....  ....++...+.+
T Consensus       161 ~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~-~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~  236 (350)
T 3fkd_A          161 TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGY-IVA-NKDFMKRVAAFST--PWAVNALAIEAA  236 (350)
T ss_dssp             SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEE-EEC-CHHHHHHHHTTCC--TTCSCHHHHHHH
T ss_pred             CEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEe-EEe-CHHHHHHHHHhCC--CCCCCHHHHHHH
Confidence            59999999864322111     1 235569999999999866666654 545 5667666654332  224677777777


Q ss_pred             HhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcC
Q 027424           81 LRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK  157 (223)
Q Consensus        81 ~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~  157 (223)
                      .+.|+.   +..|+++..++...+.+.|+++|.+. + +|                ..|+.+.+.+... ...+|.+.|.
T Consensus       237 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~----------------~~~~~~~~~~~~~-~~~~l~~~L~  297 (350)
T 3fkd_A          237 KFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVE-V-HP----------------SGTTFFLLRLKKG-TAAELKKYML  297 (350)
T ss_dssp             HHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEE-E-CC----------------CSSSEEEEEESSS-CHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-E-CC----------------CCCcEEEEECCCC-CHHHHHHHHH
Confidence            777765   34566667799999999999988763 3 34                1456677777421 2334444433


Q ss_pred             c-ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHhc
Q 027424          158 Y-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-DVNDLISDLDKALRT  220 (223)
Q Consensus       158 l-~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE-d~~dL~~dl~~Al~~  220 (223)
                      - ..+.++-|....                     +..++.+|||+|.+ +.++|++.|++.++.
T Consensus       298 ~~~gi~v~~g~~f~---------------------~~~~~~iRis~~~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          298 EEYNMLIRDASNFR---------------------GLDESYVRITTQRPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             HTTCEECEECTTST---------------------TCCTTEEEEECCCHHHHHHHHHHHHHHHTC
T ss_pred             HHCCEEEEeCccCC---------------------CCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            2 223333332210                     12468899999974 467888888887764

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.08  E-value=1.6e-09  Score=96.20  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=81.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCC--CcEEEecc--cccccCCcccceeEEEecChhHHHHHHHHHHhc--------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--------   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~G--ADivv~S~--tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~--------   68 (223)
                      +|+++|+++|+|++++.+...+.-.++  +|+++.|+  +|++++++  .+|+++.+++++.+++.......        
T Consensus       173 l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~  250 (399)
T 2oga_A          173 LADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHE  250 (399)
T ss_dssp             HHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCC
T ss_pred             HHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccCCcCC--ceEEEEeCCHHHHHHHHHHHhcCcccccccc
Confidence            478899999999999755322322344  79999999  79999877  46777777677777665543321        


Q ss_pred             --C--CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           69 --G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        69 --g--~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                        |  ..+++..++.+..+++.+....++..+++..+.+.|++.|.+
T Consensus       251 ~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~  297 (399)
T 2oga_A          251 TKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGI  297 (399)
T ss_dssp             SCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCTTC
T ss_pred             ccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence              1  245788888888888888877888889999999999988764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.08  E-value=1.3e-09  Score=95.53  Aligned_cols=110  Identities=13%  Similarity=0.086  Sum_probs=73.8

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-cCCCc-----EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-ELGAD-----IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-~~GAD-----ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|+++|+++|+|++++....    ..++ .++.|     +++.|++|.++..+..+ |+++.+++++.+.+.......+.
T Consensus       192 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~  270 (391)
T 4dq6_A          192 ICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQS-SYVVLPDEKDYKLLDDAFTRIDI  270 (391)
T ss_dssp             HHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCC-EEEECCSHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccce-EEEEeCCHHHHHHHHHHHHhhcC
Confidence            37899999999999864221    1122 23333     99999999997666555 45556665777777665443332


Q ss_pred             -CCChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhc-CCCe
Q 027424           71 -GLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRV  111 (223)
Q Consensus        71 -~~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~-~p~v  111 (223)
                       +.++.....+...++.    +..+.++..++...+.+.|++ .|.+
T Consensus       271 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  317 (391)
T 4dq6_A          271 KRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKL  317 (391)
T ss_dssp             CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             CCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence             4566666655555554    455567788888999999988 5765

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.08  E-value=4.8e-10  Score=97.49  Aligned_cols=108  Identities=16%  Similarity=0.073  Sum_probs=74.7

Q ss_pred             CccccCCEEEEecCCC---C---CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC--
Q 027424            1 MAHAHGALLLVDNSIM---S---PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~---s---~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~--   72 (223)
                      +|+++|++|++|+++.   .   +....++..++|+++.|+||+++|..   ||+++. ++++.+.+...+...+..+  
T Consensus       164 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~  239 (357)
T 3lws_A          164 YCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIA---GAILAG-PAAFCQTARIWKRRYGGDLIS  239 (357)
T ss_dssp             HHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSS---CEEEEE-CHHHHHHHHHHHHHTTCCCSC
T ss_pred             HHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCc---eEEEEc-CHHHHHHHHHHHHHhcCCccc
Confidence            4789999999999864   1   11122333468999999999997653   476655 5577777766555554332  


Q ss_pred             ChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCee
Q 027424           73 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  112 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~  112 (223)
                      ....+.....+++....|+++..+++..+.+.|++.|.+.
T Consensus       240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~  279 (357)
T 3lws_A          240 LYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVH  279 (357)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            2222333446677776777888899999999999998873

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.06  E-value=2.8e-09  Score=92.82  Aligned_cols=165  Identities=16%  Similarity=0.227  Sum_probs=100.7

Q ss_pred             CCEEEEecCCCCCCC---cCcc----cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHH
Q 027424            6 GALLLVDNSIMSPVL---SRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW   78 (223)
Q Consensus         6 g~~lvVDnT~~s~~~---~~pl----~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~   78 (223)
                      |+++|+|++++....   ..++    ..+-++++.|++|.++..+..+|. +++ ++++.+.+.....  ..+.++...+
T Consensus       187 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~-~~~-~~~~~~~l~~~~~--~~~~~~~~~~  262 (363)
T 3ffh_A          187 DVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGY-GIA-DKEIIRQLNIVRP--PFNTTSIGQK  262 (363)
T ss_dssp             TSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEE-EEE-CHHHHHHHHHTCC--SCCCBHHHHH
T ss_pred             CcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceee-eec-CHHHHHHHHHhCC--CCCCCHHHHH
Confidence            999999999862111   1111    223458999999999867766555 445 5566666654332  2346777677


Q ss_pred             HHHhcH---HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-CHHHHHHHHh
Q 027424           79 ICLRGV---KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  154 (223)
Q Consensus        79 ll~~~l---~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~~~~~~~f~~  154 (223)
                      .+...+   +.+..+.++..++...+.+.|++++.+. + +|+                .|+.+.+++. +.+...+.+.
T Consensus       263 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~~~----------------~~~~~~~~~~~~~~~~~~~l~  324 (363)
T 3ffh_A          263 LAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVK-L-YPA----------------NGNFVLIDLGIEAGTIFSYLE  324 (363)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCE-E-CCC----------------CSSEEEEECSSCHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCce-E-CCC----------------CCeEEEEECCCCHHHHHHHHH
Confidence            766666   4456667888899999999999977763 3 331                3567778874 3333333222


Q ss_pred             hcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHH
Q 027424          155 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-DVNDLISDLDKAL  218 (223)
Q Consensus       155 ~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE-d~~dL~~dl~~Al  218 (223)
                      .-++.   ++-|..                      .| .++.+|||+|-+ |.+.+++.|+++|
T Consensus       325 ~~gi~---v~~g~~----------------------~~-~~~~iRis~~~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          325 KNGYI---TRSGAA----------------------LG-FPTAVRITIGKEEDNSAVIALLEKLL  363 (363)
T ss_dssp             HTTEE---CEETTT----------------------TT-CTTEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             HCCeE---EEeCcc----------------------CC-CCCeEEEECCCHHHHHHHHHHHHHhC
Confidence            22322   222221                      11 157899999943 4566666666553

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.06  E-value=3e-09  Score=93.28  Aligned_cols=175  Identities=13%  Similarity=0.173  Sum_probs=106.3

Q ss_pred             CccccCCEEEEecCCCCCCCc---C----cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-Hh-cCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS---R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NA-EGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~---~----pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~~-~g~~   71 (223)
                      +|+++|+++|+|++++.....   .    .+..++|+++.|++|+++..    ||+++++ +++.+.+.... .. .+..
T Consensus       193 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~----GG~~~~~-~~~~~~l~~~~~~~~~~~~  267 (384)
T 1bs0_A          193 VTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS----GAAVLCS-STVADYLLQFARHLIYSTS  267 (384)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC----CEEEEEC-HHHHHHHHHHCHHHHSSBC
T ss_pred             HHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhcc----CcEEEeC-HHHHHHHHHhchhhhcCCC
Confidence            478999999999998765421   1    12246899999999999843    4877765 56666665432 12 2334


Q ss_pred             CChHhHHHHHhcHHHHH-----HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           72 LAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~-----~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      .++.....+...++.+.     .+.++..++...+.+.|++.+ + ++. |                +.|+++.|.+.+.
T Consensus       268 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~-~----------------~~~~~~~~~~~~~  328 (384)
T 1bs0_A          268 MPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP-F-TLA-D----------------SCSAIQPLIVGDN  328 (384)
T ss_dssp             CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-C-EEC-S----------------CCSSBCCEEEESH
T ss_pred             CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC-C-ccc-C----------------CCCCEEEEEeCCH
Confidence            67777666666776654     455777888999999998874 3 332 2                1466777777543


Q ss_pred             HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 027424          147 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  219 (223)
Q Consensus       147 ~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~  219 (223)
                      ....+|.+.|.--.+.+.-|..      |      ..+        ..++.+|||++....++-++.+-++|+
T Consensus       329 ~~~~~l~~~l~~~gi~v~~~~~------~------~~~--------~~~~~~Ri~~~~~~~~~~i~~~~~~l~  381 (384)
T 1bs0_A          329 SRALQLAEKLRQQGCWVTAIRP------P------TVP--------AGTARLRLTLTAAHEMQDIDRLLEVLH  381 (384)
T ss_dssp             HHHHHHHHHHHHTTEECCEECT------T------SSC--------TTCEEECCBCCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCcEEEeecC------C------CCC--------CCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence            3444555544221222222211      1      000        124789999998744444455555554

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.06  E-value=2.2e-09  Score=95.62  Aligned_cols=106  Identities=9%  Similarity=-0.014  Sum_probs=73.0

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|++++....    ...+.+    +.|+++.|++|.++..+..+| +++. ++++.+.+.........+.
T Consensus       209 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G-~~~~-~~~~~~~l~~~~~~~~~~~  286 (404)
T 2o1b_A          209 KFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVG-FAVG-NKDMIQALKKYQTHTNAGM  286 (404)
T ss_dssp             HHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCE-EEEE-CHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheE-eEec-CHHHHHHHHHHHhhccCCC
Confidence            47899999999999865321    122333    457999999999976665555 4555 4567777766555544456


Q ss_pred             ChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ++...+.+...|+.    +..+.++..++...+.+.|+++
T Consensus       287 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  326 (404)
T 2o1b_A          287 FGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA  326 (404)
T ss_dssp             CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77766666666665    3344466777888899999887

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.06  E-value=1.4e-09  Score=94.95  Aligned_cols=110  Identities=15%  Similarity=0.075  Sum_probs=75.3

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Cccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++.....     .++.    .+.++++.|++|.++..+..+|.++ ..++++.+.+.........+
T Consensus       178 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~-~~~~~~~~~~~~~~~~~~~~  256 (377)
T 3fdb_A          178 LAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQII-FSNPSDAEHWQQLSPVIKDG  256 (377)
T ss_dssp             HHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEE-CCSHHHHHHHHHSCHHHHCC
T ss_pred             HHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEE-eCCHHHHHHHHHHHHhhcCC
Confidence            378999999999998642211     1221    2345999999999976666665444 55666766665543333345


Q ss_pred             CChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhc-CCCe
Q 027424           72 LAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRV  111 (223)
Q Consensus        72 ~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~-~p~v  111 (223)
                      .++...+.+...++.    +..+.++..++...+.+.|++ .|.+
T Consensus       257 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  301 (377)
T 3fdb_A          257 ASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGA  301 (377)
T ss_dssp             CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             CCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            677767666666665    455667888899999999988 6765

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.05  E-value=9.4e-10  Score=95.92  Aligned_cols=168  Identities=14%  Similarity=0.183  Sum_probs=104.0

Q ss_pred             ccCCEEEEecCCCCCC-------CcCccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            4 AHGALLLVDNSIMSPV-------LSRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         4 ~~g~~lvVDnT~~s~~-------~~~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      ++|+++|+|++++...       ...++.    .+.++++.|++|.++.++..+|. +++ ++++.+.+.......  ..
T Consensus       183 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~-~~~-~~~~~~~~~~~~~~~--~~  258 (365)
T 3get_A          183 NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGY-GIA-NANIISAFYKLRAPF--NV  258 (365)
T ss_dssp             CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEE-EEE-CHHHHHHHHHHSCTT--CS
T ss_pred             CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEE-EEc-CHHHHHHHHHhcCCC--Cc
Confidence            5699999999976211       122322    36779999999999766766655 545 556766665544333  35


Q ss_pred             ChHhHHHHHhcHH---HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHH
Q 027424           73 APFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  149 (223)
Q Consensus        73 sp~da~ll~~~l~---tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~  149 (223)
                      ++...+.+...++   .+..+.++..++...+.+.|+++ .+ ++ +|+                .|+.+.+.+.+. ..
T Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~-~~~----------------~~~~~~~~~~~~-~~  318 (365)
T 3get_A          259 SNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NI-KI-IDS----------------YTNFITYFFDEK-NS  318 (365)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TC-EE-CCC----------------SSSEEEEECSSS-CH
T ss_pred             CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CC-EE-CCC----------------CCeEEEEECCCC-CH
Confidence            6665665555554   35666788889999999999988 44 33 331                356677777421 23


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  219 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-Ed~~dL~~dl~~Al~  219 (223)
                      .+|.+.|.--.+.++-|..                      .|  ++.+|+|++- ||.+.+++.|+++++
T Consensus       319 ~~~~~~l~~~gi~v~~g~~----------------------~~--~~~iRis~~~~~~i~~l~~~l~~~l~  365 (365)
T 3get_A          319 TDLSEKLLKKGIIIRNLKS----------------------YG--LNAIRITIGTSYENEKFFTEFDKILR  365 (365)
T ss_dssp             HHHHHHHHTTTEECEECGG----------------------GT--CSEEEEECCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCEEEEECcc----------------------CC--CCEEEEEcCCHHHHHHHHHHHHHHhC
Confidence            3333333211122222211                      12  5789999995 467888888887763

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.05  E-value=8e-10  Score=97.98  Aligned_cols=103  Identities=29%  Similarity=0.378  Sum_probs=79.1

Q ss_pred             CccccCCEEEEecCCCCCC----CcC-cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPV----LSR-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~----~~~-pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|++++..+    ... ++.+|+|+++.|++|+++|.   .+|+++++ +++.++++......+.+.+|.
T Consensus       167 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~---~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~  242 (374)
T 2aeu_A          167 TAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP---RGGLLAGK-KELVDKIYIEGTKFGLEAQPP  242 (374)
T ss_dssp             HHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC---SCEEEEEE-HHHHHHHHHHHHTTTCBCCHH
T ss_pred             HHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCc---ceEEEEEC-HHHHHHHHHhhccccCCCCHH
Confidence            4789999999999986542    122 67789999999999999874   46777665 467777777666677678888


Q ss_pred             hHHHHHhcHHHHHH-HHHHHHhHHHHH----HHHHhc
Q 027424           76 DCWICLRGVKTMAL-RVEKQQDNAQKI----AEFLAS  107 (223)
Q Consensus        76 da~ll~~~l~tl~~-R~~~~~~na~~l----a~~L~~  107 (223)
                      .++.+..+++.+.. |++++.+|+..+    .++|++
T Consensus       243 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~  279 (374)
T 2aeu_A          243 LLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNK  279 (374)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899988755 788888888777    466654

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.04  E-value=1e-09  Score=96.90  Aligned_cols=182  Identities=15%  Similarity=0.057  Sum_probs=103.3

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH---------hcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---------AEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~---------~~g~   70 (223)
                      +|+++|+++++|++++.+.. ...-++|+|+++.|++|++++ .  +||+++++ +++.++++....         ....
T Consensus       190 l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~-~--~G~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~  265 (406)
T 3cai_A          190 LVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGP-P--IGAMVFRD-PSVMNSFGSVSTNPYATGPARLEIG  265 (406)
T ss_dssp             HHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSC-S--CEEEEESC-HHHHHTSCCCCSCTTCCGGGGGCCS
T ss_pred             HHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCC-C--cCeEEEEe-hHHHhhcCCcccCCCCCccccccCC
Confidence            47899999999999976543 232346899999999998753 3  44377665 455444332110         1122


Q ss_pred             CCChHhHHHHHhcHHHH-------------------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhh
Q 027424           71 GLAPFDCWICLRGVKTM-------------------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  131 (223)
Q Consensus        71 ~~sp~da~ll~~~l~tl-------------------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~  131 (223)
                      +.++.....+...++.+                   ....++..+++..+.+.|++.|.+ ++..|.             
T Consensus       266 t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~-------------  331 (406)
T 3cai_A          266 VHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLV-MLIGRP-------------  331 (406)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTE-EECCCC-------------
T ss_pred             CccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCe-EEcCCc-------------
Confidence            33443332333344432                   334466678888999999988876 454331             


Q ss_pred             hCCCCeeEEEEeC--CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC--CCeEEEEecCCCH
Q 027424          132 AKGAGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT--EDLVRISVGIEDV  207 (223)
Q Consensus       132 ~~g~ggl~sf~~~--~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~--~~liRlsvGlEd~  207 (223)
                       ...+++++|.+.  +.+...+.+..-++   .++.|...+                .....|.+  .+.+|||++....
T Consensus       332 -~~~~~~~~~~~~~~~~~~~~~~L~~~gi---~v~~g~~~~----------------~~~~~g~~~~~~~iRis~~~~~t  391 (406)
T 3cai_A          332 -EAQIPVVSFAVHKVPADRVVQRLADNGI---LAIANTGSR----------------VLDVLGVNDVGGAVTVGLAHYST  391 (406)
T ss_dssp             -SSBCSEEEEEETTBCHHHHHHHHHHTTE---ECEECCSCH----------------HHHHHTTTTTTCCEEEECCTTCC
T ss_pred             -cccCCEEEEEECCcCHHHHHHHHHHCCc---EEecCChHH----------------HHHHcCCCCCCCeEEEEeecCCC
Confidence             123568889874  23333333333232   233332100                01123433  4789999998765


Q ss_pred             HHHHHHHHHHHhc
Q 027424          208 NDLISDLDKALRT  220 (223)
Q Consensus       208 ~dL~~dl~~Al~~  220 (223)
                      ++-++.+.++|+.
T Consensus       392 ~e~i~~~~~~l~~  404 (406)
T 3cai_A          392 MAEVDQLVRALAS  404 (406)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            5556666666654

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.04  E-value=1.6e-09  Score=94.60  Aligned_cols=198  Identities=14%  Similarity=0.093  Sum_probs=115.0

Q ss_pred             CccccCCEEEEecCCCCCCCc--CcccCCCcEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~--~pl~~GADivv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|+++|+|++++.+...  +++...+|+++.|++  |+++|++.  +|+++.+++++.+++......         
T Consensus       147 ~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (374)
T 3uwc_A          147 IAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCV  224 (374)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEES
T ss_pred             HHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccc
Confidence            478999999999988654333  333334899999966  99998665  788887777776666554321         


Q ss_pred             ---cCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCC-eeEEEcCCCCCCcchHHHHhhhCCCC-eeEEEE
Q 027424           68 ---EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR-VKKVNYAGLPEHPGHELHYSQAKGAG-SVLSFL  142 (223)
Q Consensus        68 ---~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~-v~~V~yP~l~~~~~~~~~~~~~~g~g-gl~sf~  142 (223)
                         ....+++..+.+.+..++.+..+.++..+++..+.+.|++.+. +.   .|..+..          .... ..+.+.
T Consensus       225 ~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~----------~~~~~~~~~~~  291 (374)
T 3uwc_A          225 EYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFID---VPVRREG----------VYHVFHIYVLR  291 (374)
T ss_dssp             SCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEE---CCCCCTT----------EECCCSSEEEE
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEE---eccCCCC----------CceeeEEEEEE
Confidence               1112466666666666666777788888999999999998875 42   2322111          0011 223344


Q ss_pred             eCCHHHHHHHHhhcCcceeccccCCCCCCCCCCcccc--C--CCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHH
Q 027424          143 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS--H--ASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDL  214 (223)
Q Consensus       143 ~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~--h--~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl  214 (223)
                      ..+.+...+.+..-++.   ++.|...++-..|....  +  ..++..++    +..+.+|||++.    ||++.+++-|
T Consensus       292 ~~~~~~l~~~L~~~gi~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lrl~~~~~~t~edi~~~~~~l  364 (374)
T 3uwc_A          292 VKYRDQLFQYLKDNGIE---VKIHYPIAMHLQPAAKSLGYQQGDFPMAEK----HGEAVITLPAHPYLTEEEINYIIKKV  364 (374)
T ss_dssp             ETTHHHHHHHHHHTTBC---CBCSCSSCGGGSGGGGGGCCCTTSCHHHHH----HHHHEEEECCCTTSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHCCCc---cccCCCCccccChhhhhcCCccCCCccHHH----HHhCEEEccCCCCCCHHHHHHHHHHH
Confidence            44444444444443443   22232122222222110  0  01111111    123689999884    4677777777


Q ss_pred             HHHHhc
Q 027424          215 DKALRT  220 (223)
Q Consensus       215 ~~Al~~  220 (223)
                      +++++.
T Consensus       365 ~~~l~~  370 (374)
T 3uwc_A          365 REFYLE  370 (374)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            777764

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.03  E-value=3.8e-10  Score=99.31  Aligned_cols=190  Identities=21%  Similarity=0.129  Sum_probs=96.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCcc-cCCCcEEEecccccccCCcccceeEEE-ecChhHH---HHHHHH-------HHhc
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAGHSDVMAGVLA-VKGERLA---KELYFL-------QNAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl-~~GADivv~S~tK~l~G~~d~~~G~v~-~~~~~~~---~~l~~~-------~~~~   68 (223)
                      +|+++|+++|+|++++.+.....+ .+ +|+++.|++|.++..+  + |+++ ++++.+.   ..+...       ....
T Consensus       184 la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (400)
T 3vax_A          184 QLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKG--V-GALVTRRREEMDDERVPLEPIMFGGGQERKLR  259 (400)
T ss_dssp             HHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSS--C-EEEEECBCSSSTTCBCCCCCSSCSSCTGGGTS
T ss_pred             HHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCc--e-EEEEEecchhccccccccCceecCCCceeeee
Confidence            478999999999999765432222 23 8999999999654332  3 4455 5552111   011100       0112


Q ss_pred             CCCCChHhHHHHHhcHHHHH----HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           69 GSGLAPFDCWICLRGVKTMA----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~tl~----~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      ..+.++...+.+..+++.+.    ...++..+++..+.+.|+ .|.+ ++..|.             ....++++.|.+.
T Consensus       260 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~-~~~~~~-------------~~~~~~~~~~~~~  324 (400)
T 3vax_A          260 PGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSF-QVNGDQ-------------DHVVPHILNLSFE  324 (400)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTC-EECSCT-------------TSBCTTEEEEECT
T ss_pred             cCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCE-EEeCCc-------------ccCCCCEEEEEeC
Confidence            22445555555556666543    344666677777777887 6665 333221             1124678888874


Q ss_pred             CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC----CCeEEEEe-c----CCCHHHHHHHHH
Q 027424          145 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISV-G----IEDVNDLISDLD  215 (223)
Q Consensus       145 ~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~----~~liRlsv-G----lEd~~dL~~dl~  215 (223)
                      +. ..++|.+.|. ..+.++.|...+....        .+.......|++    ++.||||+ |    -|+.+.+++.|+
T Consensus       325 ~~-~~~~l~~~L~-~gi~v~~g~~~~~~~~--------~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~  394 (400)
T 3vax_A          325 DV-DAEAFLVTLK-DLVAVATGSASTSASF--------TPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVA  394 (400)
T ss_dssp             TC-CHHHHHHHHH-HHHHHTTTTEEEEEEE--------CCHHHHHTTTCCHHHHTSEEEEEEEEC---------------
T ss_pred             CC-CHHHHHHHHh-cCcEEEecccccCCCC--------CccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHH
Confidence            31 2345555665 5555666643221100        011223345555    48999999 8    455666666666


Q ss_pred             HHHh
Q 027424          216 KALR  219 (223)
Q Consensus       216 ~Al~  219 (223)
                      ++++
T Consensus       395 ~~~~  398 (400)
T 3vax_A          395 KLKP  398 (400)
T ss_dssp             ----
T ss_pred             HHhc
Confidence            6654

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.02  E-value=1.9e-10  Score=99.55  Aligned_cols=171  Identities=17%  Similarity=0.200  Sum_probs=104.7

Q ss_pred             CccccCCEEEEecCCC------CCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC--
Q 027424            1 MAHAHGALLLVDNSIM------SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~------s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~--   72 (223)
                      +|+++|+++++|++..      .+....++..++|.++.|+||++++.   +||+++ .++++.+++...+...|..+  
T Consensus       161 ~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~-~~~~~~~~~~~~~~~~~~~~~~  236 (347)
T 1jg8_A          161 IAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP---VGSVVV-GDRDFIERARKARKMLGGGMRQ  236 (347)
T ss_dssp             HHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS---SCEEEE-ECHHHHHHHHHHHHHHTCCCSS
T ss_pred             HHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC---ceEEEE-cCHHHHHHHHHHHHHcCCchhH
Confidence            3788999999999741      12222334457999999999999864   566554 45666666665555555433  


Q ss_pred             ChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC-HHHHHH
Q 027424           73 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKH  151 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~-~~~~~~  151 (223)
                      ++..++....+++....++++..+++..+.+.|++. .+. +.++               ...|+++.|.+.. .....+
T Consensus       237 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~  299 (347)
T 1jg8_A          237 AGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEI-GYS-VNPE---------------DVKTNMVILRTDNLKVNAHG  299 (347)
T ss_dssp             THHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHH-TCB-CCGG---------------GCCSSEEEEECTTSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cce-eccC---------------CCcceEEEEEcccccCCHHH
Confidence            445566666777776566777778889999999886 432 3221               1146678888742 112334


Q ss_pred             HHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 027424          152 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  219 (223)
Q Consensus       152 f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~  219 (223)
                      |.+.|.--.+.++          |.                 .++.+|||++.    |+.+.+++-|+++++
T Consensus       300 ~~~~l~~~gi~v~----------~~-----------------~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~  344 (347)
T 1jg8_A          300 FIEALRNSGVLAN----------AV-----------------SDTEIRLVTHKDVSRNDIEEALNIFEKLFR  344 (347)
T ss_dssp             HHHHHHHHTEECE----------EE-----------------ETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEe----------cC-----------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            5444421111111          10                 13569999974    456666677766664

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.01  E-value=9e-09  Score=95.32  Aligned_cols=177  Identities=16%  Similarity=0.174  Sum_probs=106.8

Q ss_pred             CccccCCEEEEecCCCC-----CCCcCcccCCCcEEEecccccccCCcccceeEEEecCh--------------hHHHHH
Q 027424            1 MAHAHGALLLVDNSIMS-----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-----~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~--------------~~~~~l   61 (223)
                      +|+++|++|+||++++.     +....|++ ++|+++.|+||+++|+   .||+++++++              ++.+++
T Consensus       226 ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv~~S~hK~l~Gp---~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i  301 (490)
T 2a7v_A          226 VCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRI  301 (490)
T ss_dssp             HHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHH
T ss_pred             HHHHcCCEEEEccccccccccCCcCCCCCC-CCCEEEECCcccCccc---cchheeeccchhcccccccchhhHHHHHHH
Confidence            58999999999999643     34457776 8999999999999987   4788888764              344555


Q ss_pred             HHHHH-hcCCCCChHhHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCC
Q 027424           62 YFLQN-AEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  135 (223)
Q Consensus        62 ~~~~~-~~g~~~sp~da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~  135 (223)
                      +.... .......+....-+..+++     .+..+.++..+|+..+++.|++.. + +|..++-               .
T Consensus       302 ~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G-~-~v~~~~t---------------~  364 (490)
T 2a7v_A          302 NFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG-Y-SLVSGGT---------------D  364 (490)
T ss_dssp             HHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-C-EEGGGSC---------------S
T ss_pred             HHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC-c-EEecCCC---------------C
Confidence            44321 1111223321111222332     345677899999999999999863 3 3432211               1


Q ss_pred             CeeEEEEeC----CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe--------c
Q 027424          136 GSVLSFLTG----SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--------G  203 (223)
Q Consensus       136 ggl~sf~~~----~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv--------G  203 (223)
                      ..++.+.+.    +...+.++++..++.-...++.+..    .|                 ..++-|||++        +
T Consensus       365 t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~----~p-----------------~~~~~iRig~~a~t~~g~~  423 (490)
T 2a7v_A          365 NHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR----SA-----------------ITPGGLRLGAPALTSRQFR  423 (490)
T ss_dssp             SSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCC----CS-----------------SSCSEEEEESHHHHHTTCC
T ss_pred             CeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCC----CC-----------------CCCCceEecccccccCCCC
Confidence            245556652    2345666666655542211111111    11                 1345699965        3


Q ss_pred             CCCHHHHHHHHHHHHh
Q 027424          204 IEDVNDLISDLDKALR  219 (223)
Q Consensus       204 lEd~~dL~~dl~~Al~  219 (223)
                      -||.+.+++-|.++|.
T Consensus       424 ~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          424 EDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4778888888888875

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.01  E-value=7.6e-10  Score=96.50  Aligned_cols=170  Identities=15%  Similarity=0.108  Sum_probs=96.9

Q ss_pred             CccccCCEEEEecCCCCCC---Cc---------CcccC--CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPV---LS---------RPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~---~~---------~pl~~--GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~   66 (223)
                      +|+++|+++++|++++...   ..         .++..  ++|+++.|++|+++++. .+| +++++++.+.+.+.....
T Consensus       196 l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~-~~g-~~~~~~~~~~~~~~~~~~  273 (397)
T 3f9t_A          196 IAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPI-PSG-GILFKDIGYKRYLDVDAP  273 (397)
T ss_dssp             HHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCS-SCE-EEEESSGGGGGGTCEECT
T ss_pred             HHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCC-Cce-EEEEeCHHHHHhhccCCc
Confidence            4789999999999986421   11         13333  89999999999996543 344 455666655433211111


Q ss_pred             hc---------CCCC--ChHhHHHHHhcH--HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           67 AE---------GSGL--APFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        67 ~~---------g~~~--sp~da~ll~~~l--~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                      ..         |...  ++...+..++.+  +.+..+.++..+++..+.+.|+++ .+. +.+|                
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------  335 (397)
T 3f9t_A          274 YLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFK-PVIE----------------  335 (397)
T ss_dssp             TSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSC----------------
T ss_pred             cccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-EEcC----------------
Confidence            11         1111  222333333322  334667788889999999999988 442 2222                


Q ss_pred             CCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHH
Q 027424          134 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVND  209 (223)
Q Consensus       134 g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~d  209 (223)
                      ..++++.|.+.+.+...+.+..-++.   ++-|.                          .++.+|||++.    |+.+.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~l~~~gi~---v~~~~--------------------------~~~~~Ri~~~~~~~~e~i~~  386 (397)
T 3f9t_A          336 PILNIVAIEDEDYKEVCKKLRDRGIY---VSVCN--------------------------CVKALRIVVMPHIKREHIDN  386 (397)
T ss_dssp             CSSSEEEEECTTHHHHHHHHHHTTCB---CEECS--------------------------SSSEEEEECCTTCCHHHHHH
T ss_pred             CCccEEEEEeCCHHHHHHHHHhCCeE---EeccC--------------------------CCCEEEEEEcCCCCHHHHHH
Confidence            14678888875433333333222433   11111                          14789999996    44566


Q ss_pred             HHHHHHHHHh
Q 027424          210 LISDLDKALR  219 (223)
Q Consensus       210 L~~dl~~Al~  219 (223)
                      +++.|+++++
T Consensus       387 ~~~~l~~~l~  396 (397)
T 3f9t_A          387 FIEILNSIKR  396 (397)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhhC
Confidence            6666666653

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.01  E-value=2.1e-08  Score=89.97  Aligned_cols=115  Identities=14%  Similarity=-0.014  Sum_probs=76.5

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCcccCCCc---EEEecccccccCCcccceeEEEecC-----hhHHHHHHHHHHh
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLELGAD---IVMHSATKFIAGHSDVMAGVLAVKG-----ERLAKELYFLQNA   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~~GAD---ivv~S~tK~l~G~~d~~~G~v~~~~-----~~~~~~l~~~~~~   67 (223)
                      +|+++|+++|+|++++...     ......++.|   |++.|++|.++..+..+|++++.++     +++.+.+......
T Consensus       219 ~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~  298 (427)
T 3dyd_A          219 VAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR  298 (427)
T ss_dssp             HHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhc
Confidence            4789999999999986421     1122233444   7889999998888888776554332     3455555444322


Q ss_pred             cCCCCChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           68 EGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        68 ~g~~~sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      . .+.++.....+...|+.     +..+.++..++...+.+.|++.|.+ ++..|
T Consensus       299 ~-~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~p  351 (427)
T 3dyd_A          299 I-LGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGL-RPVRP  351 (427)
T ss_dssp             H-CCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTE-EEECC
T ss_pred             c-CCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-eecCC
Confidence            2 23566666666666653     4566788888999999999998887 45555

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.01  E-value=1.4e-09  Score=96.65  Aligned_cols=110  Identities=14%  Similarity=0.076  Sum_probs=72.7

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc--CCC-cEEEecccccccCCcccceeEEEecCh----hHHHHHHHHHHhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE--LGA-DIVMHSATKFIAGHSDVMAGVLAVKGE----RLAKELYFLQNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~--~GA-Divv~S~tK~l~G~~d~~~G~v~~~~~----~~~~~l~~~~~~~g   69 (223)
                      +|+++|+++|+|++++....    .....  .+. |+++.|++|+++..+..+|++++..++    ++.+.+....... 
T Consensus       202 ~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-  280 (406)
T 1xi9_A          202 IAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-  280 (406)
T ss_dssp             HHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-
T ss_pred             HHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-
Confidence            47899999999999865322    11112  356 899999999998667666554432345    6777766555443 


Q ss_pred             CCCChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           70 SGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      .+.++...+.+...|+.    +....++..++...+.+.|++.|.+
T Consensus       281 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  326 (406)
T 1xi9_A          281 LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGI  326 (406)
T ss_dssp             CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34566666666666642    3334466677788888899888765

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.01  E-value=2.8e-09  Score=92.81  Aligned_cols=108  Identities=16%  Similarity=0.168  Sum_probs=75.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCc--ccCCCcEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP--LELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p--l~~GADivv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|+++|+|++++.+.....  +..-.|+++.|++  |++++ +  +||+++.+++++.+++......         
T Consensus       143 l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (375)
T 2fnu_A          143 LCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFE  219 (375)
T ss_dssp             HHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSC
T ss_pred             HHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccc
Confidence            47899999999999865432221  2211389999988  99975 4  6776655556676666544321         


Q ss_pred             -----cC--CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           68 -----EG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        68 -----~g--~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                           .+  ..+++..+.+.+..++.+..+.++..+++..+.+.|++.|.+
T Consensus       220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  270 (375)
T 2fnu_A          220 GEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYF  270 (375)
T ss_dssp             EEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence                 11  145676666666667777888899999999999999998865

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.00  E-value=1.3e-08  Score=93.48  Aligned_cols=179  Identities=16%  Similarity=0.179  Sum_probs=105.5

Q ss_pred             CccccCCEEEEecCCCC-----CCCcCcccCCCcEEEecccccccCCcccceeEEEecCh--------------hHHHHH
Q 027424            1 MAHAHGALLLVDNSIMS-----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-----~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~--------------~~~~~l   61 (223)
                      +|+++|++|++|++++.     +....|+. ++|+++.|+||++.|+.   +|+++++++              ++.+.+
T Consensus       216 ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~g~~~~y~~~~~~  291 (483)
T 1rv3_A          216 IADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVVTTTTHKTLRGCR---AGMIFYRRGVRSVDPKTGKEILYNLESLI  291 (483)
T ss_dssp             HHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEEEEESSGGGCCCS---CEEEEEECSBCC-------CCBCCHHHHH
T ss_pred             HHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEEEecCcccCCCCC---ceEEEEcchhhhhccccCcchhhHHHHHh
Confidence            58999999999999763     23345665 89999999999998873   588887764              233333


Q ss_pred             HHHHHhcC--CCCChHhHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCC
Q 027424           62 YFLQNAEG--SGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  134 (223)
Q Consensus        62 ~~~~~~~g--~~~sp~da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g  134 (223)
                      .... ..+  .+.......-+..+++     .+..+.++..+|+..+++.|++. ++ ++..|+-.             .
T Consensus       292 ~~~~-~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~-------------~  355 (483)
T 1rv3_A          292 NSAV-FPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GY-KIVTGGSD-------------N  355 (483)
T ss_dssp             HHHH-TTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TC-EEGGGSCS-------------S
T ss_pred             hhhc-CCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CC-EeccCCCC-------------C
Confidence            3211 111  1222211112222333     34566788899999999999987 44 45444210             0


Q ss_pred             CCeeEEEEe-C-CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec--------C
Q 027424          135 AGSVLSFLT-G-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------I  204 (223)
Q Consensus       135 ~ggl~sf~~-~-~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG--------l  204 (223)
                      +-.++.|.. + +.+.+.++++..++.-......|..    .+                 ..++.||||++        .
T Consensus       356 ~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~----~~-----------------~~~~~iRis~~~~~t~g~~~  414 (483)
T 1rv3_A          356 HLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDK----SA-----------------LRPSGLRLGTPALTSRGLLE  414 (483)
T ss_dssp             SEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCS----CT-----------------TSCCEEEEECHHHHHTTCCH
T ss_pred             ceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCC----cC-----------------CCCceEEeecCCcccCCCCH
Confidence            122333322 2 3455666676655542211111110    01                 12478999999        4


Q ss_pred             CCHHHHHHHHHHHHhc
Q 027424          205 EDVNDLISDLDKALRT  220 (223)
Q Consensus       205 Ed~~dL~~dl~~Al~~  220 (223)
                      ||.+.+++-|.++++.
T Consensus       415 edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          415 KDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6788888888887764

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.00  E-value=1.6e-08  Score=88.56  Aligned_cols=182  Identities=21%  Similarity=0.209  Sum_probs=104.9

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-------------   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-------------   66 (223)
                      +|+++|+++|+|++++.+.. .+.-+.++|+++.|++|.+++.+   .|+++++ +++.+++.....             
T Consensus       189 l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
T 1kmj_A          189 LAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG---IGILYVK-EALLQEMPPWEGGGSMIATVSLSEG  264 (406)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT---CEEEEEC-HHHHHHCCCSSCSTTSEEEEETTTE
T ss_pred             HHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCC---cEEEEEe-HHHHhhcCCcccCCCceeecccccc
Confidence            47899999999999875432 12223589999999999997655   4777665 555554432110             


Q ss_pred             --------hcCCCCChHhHHHHH-hcHHHHH-----HHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           67 --------AEGSGLAPFDCWICL-RGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        67 --------~~g~~~sp~da~ll~-~~l~tl~-----~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                              .+....++..+...+ ..++.+.     ...++..+++..+.+.|++.|.+ ++.-|.              
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--------------  329 (406)
T 1kmj_A          265 TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDL-TLYGPQ--------------  329 (406)
T ss_dssp             EEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTE-EEESCT--------------
T ss_pred             cccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCe-EEecCC--------------
Confidence                    011112333333222 4455442     33466678888999999988876 344331              


Q ss_pred             CCCCeeEEEEeC--CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC----C
Q 027424          133 KGAGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE----D  206 (223)
Q Consensus       133 ~g~ggl~sf~~~--~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE----d  206 (223)
                       +.|+++.|.+.  +.+...+.+..-++.   +.-|...              ........|. ++.+|||++..    |
T Consensus       330 -~~~~~~~~~~~~~~~~~~~~~l~~~gi~---v~~g~~~--------------~~~~~~~~g~-~~~iRis~~~~~t~~~  390 (406)
T 1kmj_A          330 -NRLGVIAFNLGKHHAYDVGSFLDNYGIA---VRTGHHC--------------AMPLMAYYNV-PAMCRASLAMYNTHEE  390 (406)
T ss_dssp             -TCCSEEEEEETTCCHHHHHHHHHHTTEE---CEEECTT--------------CHHHHHHTTC-SCEEEEECCTTCCHHH
T ss_pred             -CcCCEEEEEECCCCHHHHHHHHhhCCcE---EEecccc--------------chHHHHhcCC-CCeEEEEeecCCCHHH
Confidence             14788889884  333333334333433   1112110              0111122342 57899999975    6


Q ss_pred             HHHHHHHHHHHHhc
Q 027424          207 VNDLISDLDKALRT  220 (223)
Q Consensus       207 ~~dL~~dl~~Al~~  220 (223)
                      .+.+++.|+++++.
T Consensus       391 i~~~~~~l~~~~~~  404 (406)
T 1kmj_A          391 VDRLVTGLQRIHRL  404 (406)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            67777777777653

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=98.98  E-value=1.6e-08  Score=88.11  Aligned_cols=180  Identities=13%  Similarity=0.127  Sum_probs=104.2

Q ss_pred             Ccccc--CCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHH-HHH--------------
Q 027424            1 MAHAH--GALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELY--------------   62 (223)
Q Consensus         1 ia~~~--g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~-~l~--------------   62 (223)
                      +|+++  |+++++|++++.+.. ...-++|+|+++.|++|+++|....  |+++++++ +.+ +++              
T Consensus       162 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~--G~~~~~~~-~~~~~l~~~~~~~~~~~~~~~  238 (385)
T 2bkw_A          162 AIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGL--SISLCSSR-FMDYALNDSKNGHVHGYFSSL  238 (385)
T ss_dssp             HHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCE--EEEEECHH-HHHHHTCHHHHCCCSCSTTCH
T ss_pred             HHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcc--eEEEEcHH-HHHHHHhhccCCCCCceeecH
Confidence            47888  999999999864322 2223458999999999988764322  66766654 333 321              


Q ss_pred             ----HH-HHh-cC-----CCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHH-hcCCCeeEEEcCCCCCCcch
Q 027424           63 ----FL-QNA-EG-----SGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFL-ASHPRVKKVNYAGLPEHPGH  125 (223)
Q Consensus        63 ----~~-~~~-~g-----~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L-~~~p~v~~V~yP~l~~~~~~  125 (223)
                          .. ... .|     .+.++...+.+..+++.+     ..+.++..+++..+.+.| ++. .+ ++..|.    +..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~-~~~~~~----~~~  312 (385)
T 2bkw_A          239 RRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QL-TSVSRY----PSN  312 (385)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CC-EESSCS----SST
T ss_pred             HHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Cc-eecccC----ccc
Confidence                11 111 11     234554444455555543     344577788889999999 776 44 333221    100


Q ss_pred             HHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE-ec-
Q 027424          126 ELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS-VG-  203 (223)
Q Consensus       126 ~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls-vG-  203 (223)
                             ...+.++.|.+.+   ..+|.+.|.--.+.++-|..            .          ...++.+||| +| 
T Consensus       313 -------~~~~~~~~~~~~~---~~~~~~~l~~~gi~v~~g~~------------~----------~~~~~~iRis~~~~  360 (385)
T 2bkw_A          313 -------MSAHGLTAVYVAD---PPDVIAFLKSHGVVIAGGIH------------K----------DIGPKYIRIGHMGV  360 (385)
T ss_dssp             -------TBCSSCEEEECSC---HHHHHHHHHHTTEECBCCCC------------T----------TTGGGEEEECCCGG
T ss_pred             -------ccCCceEEEecCC---HHHHHHHHHHCCeEEeCCCC------------c----------ccCCCEEEEEcccc
Confidence                   0257788898854   33444444211222222211            0          0135689999 87 


Q ss_pred             ------CCCHHHHHHHHHHHHhcC
Q 027424          204 ------IEDVNDLISDLDKALRTG  221 (223)
Q Consensus       204 ------lEd~~dL~~dl~~Al~~~  221 (223)
                            .||.+.+++.|+++++..
T Consensus       361 ~~~~~~~e~i~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          361 TACNKNLPYMKNCFDLIKLALQRK  384 (385)
T ss_dssp             GTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhc
Confidence                  367899999999888653

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=98.98  E-value=6.1e-10  Score=96.87  Aligned_cols=177  Identities=16%  Similarity=0.171  Sum_probs=108.3

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHH-HHHHHH--hc-----CCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQN--AE-----GSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~-l~~~~~--~~-----g~~   71 (223)
                      +|+++|+++|+|++++.+.. .+..++++|+++.|++|+++|..  -.|+++++++ +.++ +.....  ..     ..+
T Consensus       172 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~--~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  248 (371)
T 2e7j_A          172 VCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASG--PIGVMGMKEE-WAEIVLRRSEKYKNKEVELLGCT  248 (371)
T ss_dssp             HHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCS--SCEEEEECTT-TTTTTTCBCSSCTTSBGGGTTCC
T ss_pred             HHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCC--CcEEEEEech-hhhhhccccccCcccccccccCC
Confidence            47899999999999876543 34445689999999999998764  3466767654 4343 332211  11     224


Q ss_pred             CChHhHHHHHhcHHHHHHH-HHHH--HhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHH
Q 027424           72 LAPFDCWICLRGVKTMALR-VEKQ--QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL  148 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~R-~~~~--~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~  148 (223)
                      .++...+.+..+++.+..+ .++.  .+++..+.+.|++. .+ ++..|.              .+.|+++.|.+.   .
T Consensus       249 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~-~~~~~~--------------~~~~~~~~~~~~---~  309 (371)
T 2e7j_A          249 ARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKL-GI-KQLGDN--------------PHNHDLMFFHAE---V  309 (371)
T ss_dssp             CCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHT-TC-EEESSS--------------SCCSSEEEEECH---H
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Cc-EEecCC--------------CccCceEEEECC---C
Confidence            4555555566677766533 3555  68889999999887 54 343331              013678888875   4


Q ss_pred             HHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhc---CCCCCeEE-EEecCC-----CHHHHHHHHHHHHh
Q 027424          149 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR---GLTEDLVR-ISVGIE-----DVNDLISDLDKALR  219 (223)
Q Consensus       149 ~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~---gi~~~liR-lsvGlE-----d~~dL~~dl~~Al~  219 (223)
                      ..+|.+.+.-  .+..+        .| .          ....   |..++.+| +|++..     +.+.+++.|+++++
T Consensus       310 ~~~~~~~l~~--~gi~~--------~~-~----------~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~  368 (371)
T 2e7j_A          310 LYEISKKAKG--GRFFL--------YR-E----------LKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE  368 (371)
T ss_dssp             HHHHHHHSSS--GGGHH--------HH-H----------HHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--CCEEE--------Ee-c----------cccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence            5566666642  22211        11 0          0111   44578899 999964     45555666666655


Q ss_pred             c
Q 027424          220 T  220 (223)
Q Consensus       220 ~  220 (223)
                      .
T Consensus       369 ~  369 (371)
T 2e7j_A          369 K  369 (371)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=98.98  E-value=6.3e-09  Score=91.73  Aligned_cols=198  Identities=13%  Similarity=0.076  Sum_probs=112.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCC--CcEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHhcC-------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-------   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~G--ADivv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g-------   69 (223)
                      +|+++|+++|+|++++.+....+...+  +|+++.|++  |.++| +  .+|+++.+++.+.+.+......-.       
T Consensus       166 l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~-g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~  242 (391)
T 3dr4_A          166 VARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT-G--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYW  242 (391)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCC-B--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTC
T ss_pred             HHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCc-C--CeEEEEECCHHHHHHHHHHHhcCCCCCCccc
Confidence            478999999999998765433332222  599999955  99986 3  378887887777766655432110       


Q ss_pred             -------CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           70 -------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        70 -------~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                             ..+++..+.+.+..++.+....++..+++..+.+.|++. .+. +..+..+..         ....+.++.+.
T Consensus       243 ~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~---------~~~~~~~~~i~  311 (391)
T 3dr4_A          243 FPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNR-VTKPHVALT---------GRHVFWMYTVR  311 (391)
T ss_dssp             CSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTS-EECCCCCTT---------SCCCCSSEEEE
T ss_pred             ccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-Ccc-ccCcCCCCC---------CcceeEEEEEE
Confidence                   235666666666667777777888888999999999887 443 222200000         01234466777


Q ss_pred             eCC-----HHHHHHHHhhcCcceeccccCCCCCCCCCCcccc--CCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHH
Q 027424          143 TGS-----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMS--HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  215 (223)
Q Consensus       143 ~~~-----~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~--h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~  215 (223)
                      +..     .+...+.+..-++.   ++.|. ..+-+.|....  ...++...+.    ....|||+++..-.++=++.+.
T Consensus       312 ~~~~~~~~~~~l~~~L~~~GI~---v~~~~-~p~~~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~~~~t~edi~~~~  383 (391)
T 3dr4_A          312 LGEGLSTTRDQVIKDLDALGIE---SRPVF-HPMHIMPPYAHLATDDLKIAEAC----GVDGLNLPTHAGLTEADIDRVI  383 (391)
T ss_dssp             ECSSCSSCHHHHHHHHHHTTCC---CEECC-CCGGGSGGGGGGCCTTCHHHHHH----HHHEEEECCCTTCCHHHHHHHH
T ss_pred             ECCccchhHHHHHHHHHHCCCc---eeecC-CccccChhhhhcCcCCChHHHHH----HhCeEEccCCCCCCHHHHHHHH
Confidence            643     33333333333443   22221 12222232211  1222222222    2467999999765544455555


Q ss_pred             HHHhc
Q 027424          216 KALRT  220 (223)
Q Consensus       216 ~Al~~  220 (223)
                      ++|++
T Consensus       384 ~~l~~  388 (391)
T 3dr4_A          384 AALDQ  388 (391)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            55543

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.98  E-value=1.8e-09  Score=98.98  Aligned_cols=184  Identities=17%  Similarity=0.175  Sum_probs=116.4

Q ss_pred             CccccCCEEEEecCC-----CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecCh--------------hHHHHH
Q 027424            1 MAHAHGALLLVDNSI-----MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~-----~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~--------------~~~~~l   61 (223)
                      ||++.|++|++|-++     ++...++|+++ ||||..|+||+|.|+   .||+|.++++              ++.+++
T Consensus       226 IAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVTtTTHKTLrGP---rGG~Il~~~~~~~~~~k~~~~~~~~~~kki  301 (490)
T 3ou5_A          226 VCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRI  301 (490)
T ss_dssp             HHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSSTTCSC---SCEEEEEECSEEEECC--CCEEECCCHHHH
T ss_pred             HHhhcccEEEechhhhhhhhcccccCCcccc-ceEEeccccccccCC---CceEEEeccccccccccccchhHHHHHHHH
Confidence            578999999999996     45678999996 999999999999999   5999988763              455565


Q ss_pred             HHHHHhcCCCCChHhHHHHHh--cH-----HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCC
Q 027424           62 YFLQNAEGSGLAPFDCWICLR--GV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  134 (223)
Q Consensus        62 ~~~~~~~g~~~sp~da~ll~~--~l-----~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g  134 (223)
                      ...- ..|..-+|...-....  ++     ..+....++..+||+.||+.|.+...  +|..-|   +..|         
T Consensus       302 n~aV-FPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~--~vvsGg---TdnH---------  366 (490)
T 3ou5_A          302 NFAV-FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY--SLVSGG---TDNH---------  366 (490)
T ss_dssp             HHHH-TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC--EEGGGS---CSSS---------
T ss_pred             Hhhc-CccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCC--eeecCC---CCce---------
Confidence            5431 2232234432222111  11     13567789999999999999998864  444322   1222         


Q ss_pred             CCeeEEEEe---C-CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 027424          135 AGSVLSFLT---G-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  210 (223)
Q Consensus       135 ~ggl~sf~~---~-~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL  210 (223)
                         ++-+++   + +-..+++.++..++......+.+.++    |..++-        .+.| ++.+.|...+-+|.+++
T Consensus       367 ---lvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~s----p~~~SG--------iRiG-Tpa~TtRG~~e~dm~~I  430 (490)
T 3ou5_A          367 ---LVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRS----AITPGG--------LRLG-APALTSRQFREDDFRRV  430 (490)
T ss_dssp             ---EEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCC----SSSCSE--------EEEE-SHHHHHTTCCHHHHHHH
T ss_pred             ---EEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCC----CCCCCe--------eEEC-CHHHHhCCCCHHHHHHH
Confidence               444554   1 34567788999988766655554332    211100        0111 22222223556778888


Q ss_pred             HHHHHHHHh
Q 027424          211 ISDLDKALR  219 (223)
Q Consensus       211 ~~dl~~Al~  219 (223)
                      .+-+.+||.
T Consensus       431 A~~I~~~l~  439 (490)
T 3ou5_A          431 VDFIDEGVN  439 (490)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887774

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=98.97  E-value=4.4e-09  Score=91.87  Aligned_cols=169  Identities=18%  Similarity=0.133  Sum_probs=99.6

Q ss_pred             ccCCEEEEecCCCCCCCcCcc---cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH----------------
Q 027424            4 AHGALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----------------   64 (223)
Q Consensus         4 ~~g~~lvVDnT~~s~~~~~pl---~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~----------------   64 (223)
                      ++|+++|+|++++-+  ..|+   +.++|+++.|++|++.|...  .|++++++ ++.+++...                
T Consensus       186 ~~~~~li~Dea~~~g--~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~  260 (390)
T 1elu_A          186 NYPVRVLVDGAQSAG--SLPLDFSRLEVDYYAFTGHKWFAGPAG--VGGLYIHG-DCLGEINPTYVGWRSITYGAKGEPT  260 (390)
T ss_dssp             SSCCEEEEECTTTBT--TBCCCTTTSCCSEEEEESSSTTCCCTT--CEEEEECT-TTGGGCCCCSCCTTTEEECTTSCEE
T ss_pred             hcCcEEEEEcccccC--CcCCChhhcCCCEEEccccccccCCCc--eEEEEECH-HhHhhcCCccccCCcccccccCccc
Confidence            899999999998643  2233   35799999999996554421  36676665 443433211                


Q ss_pred             ------HHhcCCCCChHhHHHHHhcHHH------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           65 ------QNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        65 ------~~~~g~~~sp~da~ll~~~l~t------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                            ......+.++.....+..+++.      +..+.++..+++..+.+.|++.|++ ++..|.              
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~--------------  325 (390)
T 1elu_A          261 GWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHV-HCLATS--------------  325 (390)
T ss_dssp             EECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTE-EESCSS--------------
T ss_pred             ccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCc-EEecCc--------------
Confidence                  1111123444433334344443      4446688888999999999998776 444331              


Q ss_pred             CCCCeeEEEEeCCHHHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHH
Q 027424          133 KGAGSVLSFLTGSLALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  209 (223)
Q Consensus       133 ~g~ggl~sf~~~~~~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~d  209 (223)
                      .+.|+++.|++.......+|.+.|   ++.   +.-|.                          .++.+|||++....++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~---v~~~~--------------------------~~~~iRis~~~~~~~~  376 (390)
T 1elu_A          326 APQAGLVSFTVDSPLGHRAIVQKLEEQRIY---LRTIA--------------------------DPDCIRACCHYITDEE  376 (390)
T ss_dssp             CCSSSEEEEEECSSSCHHHHHHHHHHTTEE---CEEET--------------------------TTTEEEEECCTTCCHH
T ss_pred             cccccEEEEEcCCCCCHHHHHHHHHHCCEE---EEecC--------------------------CCCeEEEecccCCCHH
Confidence            235789999883111122333333   222   11110                          2467999998766666


Q ss_pred             HHHHHHHHHhcC
Q 027424          210 LISDLDKALRTG  221 (223)
Q Consensus       210 L~~dl~~Al~~~  221 (223)
                      -++.+-++|+..
T Consensus       377 ~i~~~~~~l~~~  388 (390)
T 1elu_A          377 EINHLLARLADF  388 (390)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh
Confidence            666777777643

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=98.97  E-value=4.5e-09  Score=92.66  Aligned_cols=110  Identities=12%  Similarity=0.190  Sum_probs=74.0

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc------CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~------~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|+++|+++|+|++++....    ..++.      .+.++++.|++|.++..+..+ |+++++++++.+.+.......+.
T Consensus       192 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~~~~~~  270 (399)
T 1c7n_A          192 IVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM-SNIIIKNPDIRERFTKSRDATSG  270 (399)
T ss_dssp             HHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC-EEEECCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchhe-EEEEECCHHHHHHHHHHHhhccc
Confidence            47899999999999864321    11221      245699999999997556555 55666656677777665554432


Q ss_pred             -CCChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhc-CCCe
Q 027424           71 -GLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRV  111 (223)
Q Consensus        71 -~~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~-~p~v  111 (223)
                       +.++...+.+...++.    +..+.++..++...+.+.|++ .|.+
T Consensus       271 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  317 (399)
T 1c7n_A          271 MPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEI  317 (399)
T ss_dssp             CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             CCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence             4577666666566543    344456777888899999988 6765

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=98.96  E-value=1.5e-09  Score=95.50  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=76.0

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCC-CcEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHh----------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELG-ADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA----------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~G-ADivv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~----------   67 (223)
                      +|+++|+++|+|++++.+.....-.+| .|+++.|++  |+++|.   .+|+++.+++++.+++......          
T Consensus       149 l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~~~---~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  225 (393)
T 1mdo_A          149 LGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCA---EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQ  225 (393)
T ss_dssp             HHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSS---SCEEEEESCHHHHHHHHHHTBTTEECC-----
T ss_pred             HHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCCccccc---cceEEEeCCHHHHHHHHHHHhcCCcccchhhh
Confidence            478899999999999755322222246 999999998  999863   4788877666776666543221          


Q ss_pred             ------------cC--CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           68 ------------EG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        68 ------------~g--~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                                  .|  ..+++..+.+.+..++.+..+.++..+++..+.+.|++.+
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~  281 (393)
T 1mdo_A          226 SGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLP  281 (393)
T ss_dssp             ------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             cccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                        01  1246666666667777777778888889999999999887

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=98.96  E-value=4.2e-09  Score=94.11  Aligned_cols=111  Identities=15%  Similarity=0.179  Sum_probs=73.9

Q ss_pred             CccccCCEEEEecCCCCCC----CcCcc-c-----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPV----LSRPL-E-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~----~~~pl-~-----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|+++|++||+|++++...    ...++ .     .+.++++.|++|.++..+..+ |+++++++++.+.+.......+.
T Consensus       222 l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~-G~~~~~~~~l~~~~~~~~~~~~~  300 (421)
T 3l8a_A          222 LCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKN-SFAIIQNESLRRKFQYRQLANNQ  300 (421)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCC-EEEECCSHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhhe-EeEEcCCHHHHHHHHHHHHhccc
Confidence            4789999999999975321    11122 1     244599999999998666555 45556656777766655433332


Q ss_pred             -CCChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcCCCee
Q 027424           71 -GLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVK  112 (223)
Q Consensus        71 -~~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~p~v~  112 (223)
                       +.+|..+..+...++.    +..+.++..++...+.+.|+++|.+.
T Consensus       301 ~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~  347 (421)
T 3l8a_A          301 HEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIK  347 (421)
T ss_dssp             SCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCE
T ss_pred             CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence             4677666655555553    45566778888999999999887763

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=98.96  E-value=1.6e-08  Score=89.13  Aligned_cols=177  Identities=18%  Similarity=0.224  Sum_probs=105.3

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccC-----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-H-HhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-Q-NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~-----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-~-~~~g   69 (223)
                      +|+++|+++|+|++++....    ....+.     ++|+++.|++|.++..+    |+++++ +++.+.+... . ....
T Consensus       198 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G----G~~~~~-~~~~~~l~~~~~~~~~~  272 (398)
T 3a2b_A          198 IANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG----GFVAGD-ADVIDFLKHNARSVMFS  272 (398)
T ss_dssp             HHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC----EEEEEC-HHHHHHHHHHCHHHHSS
T ss_pred             HHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC----cEEEeC-HHHHHHHHHhcccceec
Confidence            47899999999999975532    112221     37999999999998433    777665 5666666543 2 2233


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      ...+|..+..+...|+.+   ..+.++..++...+.+.|++. ++ ++. |                ..|.++.+.+...
T Consensus       273 ~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~-~----------------~~g~~~~~~~~~~  333 (398)
T 3a2b_A          273 ASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GF-DLG-A----------------TESPILPIFIRSN  333 (398)
T ss_dssp             BCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TC-CBC-S----------------CCSSEEEEECCCH
T ss_pred             CCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CC-CcC-C----------------CCCCEEEEEcCCH
Confidence            345665444445566554   345577778888888899876 33 121 1                1367888888543


Q ss_pred             HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhcC
Q 027424          147 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  221 (223)
Q Consensus       147 ~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~~  221 (223)
                      ....+|.+.|.--.+.+.-|....            .+        -.++.+|||++.    |+.+.+++.|+++++..
T Consensus       334 ~~~~~l~~~l~~~gi~v~~~~~~~------------~~--------~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~  392 (398)
T 3a2b_A          334 EKTFWVTKMLQDDGVFVNPVVSPA------------VP--------AEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA  392 (398)
T ss_dssp             HHHHHHHHHHHHTTEECEEECTTT------------SC--------GGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCcEEEeeCCCC------------CC--------CCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            334445444321111112121110            00        024789999996    45677778888877654

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=98.96  E-value=8.2e-09  Score=91.66  Aligned_cols=173  Identities=18%  Similarity=0.217  Sum_probs=106.8

Q ss_pred             CccccCCEEEEecCCCCCCCc---------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH--HHhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~---------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~--~~~~g   69 (223)
                      +|+++|++||+|++++...+-         ..+...+||++.|++|.+++.    +|++++++ ++.+.+...  ....+
T Consensus       211 la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~----gg~v~~~~-~~~~~~~~~~~~~~~~  285 (409)
T 3kki_A          211 ISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR----AGAIWCNN-EVNRCVPFISYPAIFS  285 (409)
T ss_dssp             HHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS----CEEEEESS-SGGGTHHHHCHHHHHS
T ss_pred             HHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC----ceEEEECH-HHHHHHHHhCcCcccc
Confidence            478999999999998653221         112225799999999999975    58787765 444444332  22334


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      ...+|..+..+..+++.+   ..+.++..++...+.+.|++.. + .  .                .+.|.++.+.+...
T Consensus       286 ~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~--~----------------~~~~~~~~~~~~~~  345 (409)
T 3kki_A          286 STLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG-L-T--I----------------RSESQIIGLETGDE  345 (409)
T ss_dssp             BCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT-C-C--C----------------CCSSSEEEEEEESH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-C-c--c----------------CCCCCEEEEEeCCH
Confidence            456776666666677665   3445677788888999998762 1 1  1                12577888888554


Q ss_pred             HHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 027424          147 ALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  219 (223)
Q Consensus       147 ~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~  219 (223)
                      ....+|.+.|   +++-. +  +      ..|..              .-.++.|||+++.    |+.+.+++-|+++++
T Consensus       346 ~~~~~~~~~L~~~Gv~v~-~--~------~~~~~--------------~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~  402 (409)
T 3kki_A          346 RNTEKVRDYLESNGVFGS-V--F------CRPAT--------------SKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVN  402 (409)
T ss_dssp             HHHHHHHHHHHHTTEECE-E--E------CTTSS--------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCceEe-e--e------CCCCc--------------CCCCcEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence            4444454443   33211 1  0      01100              0135789999984    456777777777776


Q ss_pred             cC
Q 027424          220 TG  221 (223)
Q Consensus       220 ~~  221 (223)
                      ..
T Consensus       403 ~~  404 (409)
T 3kki_A          403 YG  404 (409)
T ss_dssp             HS
T ss_pred             cC
Confidence            53

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=98.95  E-value=1.9e-08  Score=88.54  Aligned_cols=179  Identities=17%  Similarity=0.135  Sum_probs=107.3

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC-CCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g-~~~sp   74 (223)
                      +|+++|+++|+|++++.++     ...+++ .+|+++.|++|.++|..   +|+++++++++.+.+........ .+.++
T Consensus       186 l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~---~G~~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (407)
T 2dkj_A          186 IADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTLRGPR---GGLILSNDPELGKRIDKLIFPGIQGGPLE  261 (407)
T ss_dssp             HHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGGCCCS---CEEEEESCHHHHHHHHHHHTTTTCSSCCH
T ss_pred             HHHHcCCEEEEEccccccccccCccCCccc-cccEEEEeccccCCCCC---ceEEEECCHHHHHHHHhhhcccccCCCcH
Confidence            4789999999999976422     123344 38999999999998653   58787765667666655442221 12344


Q ss_pred             HhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC----C
Q 027424           75 FDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----S  145 (223)
Q Consensus        75 ~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~----~  145 (223)
                      .....+..+++.     +..+.++..+++..+.+.|++. ++ ++..|               .+.|.++.|++.    +
T Consensus       262 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~---------------~~~~~~~~~~~~~~~~~  324 (407)
T 2dkj_A          262 HVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GY-RIVTG---------------GTDNHLFLVDLRPKGLT  324 (407)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TC-EEGGG---------------SCSSSEEEEECGGGTCC
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-Cc-eeecC---------------CCCceEEEEECcccCCC
Confidence            222233344443     3455677888889999999887 43 33221               124778888873    3


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec--------CCCHHHHHHHHHHH
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLDKA  217 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG--------lEd~~dL~~dl~~A  217 (223)
                      .+...+.+..-++.   +.-|..      |   .|...       .+ .++.+|+|++        -|+.+.+++-|+++
T Consensus       325 ~~~~~~~l~~~gi~---v~~~~~------~---~~~~~-------~~-~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~  384 (407)
T 2dkj_A          325 GKEAEERLDAVGIT---VNKNAI------P---FDPKP-------PR-VTSGIRIGTPAITTRGFTPEEMPLVAELIDRA  384 (407)
T ss_dssp             HHHHHHHHHHTTEE---CEECCC------T---TCSSC-------TT-TCSEEEEECHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCce---ecCCcC------c---ccccc-------cc-CCCceeeecccccccCCCHHHHHHHHHHHHHH
Confidence            33333334433433   222211      1   01000       01 2467999994        46789999999988


Q ss_pred             Hhc
Q 027424          218 LRT  220 (223)
Q Consensus       218 l~~  220 (223)
                      ++.
T Consensus       385 ~~~  387 (407)
T 2dkj_A          385 LLE  387 (407)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            865

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=98.95  E-value=9.5e-09  Score=89.05  Aligned_cols=137  Identities=14%  Similarity=0.126  Sum_probs=81.4

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCC-cEEEecccccccCCcccceeEEEecChhHHHHHHHHH------------Hh
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ------------NA   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GA-Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~------------~~   67 (223)
                      |++++|++||+|++++.+.  .|+.++. |+++.|+||+++..+  + |++++++ ++.+++....            ..
T Consensus       161 i~~~~~~~li~D~a~~~~~--~~~~~~~~di~~~s~sK~~~~~G--~-G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  234 (360)
T 1w23_A          161 FPEINHAPLIADMSSDILS--RPLKVNQFGMIYAGAQKNLGPSG--V-TVVIVKK-DLLNTKVEQVPTMLQYATHIKSDS  234 (360)
T ss_dssp             CCCCCSSCEEEECTTTTTS--SCCCGGGCSEEEEETTTTTSCTT--C-EEEEEEH-HHHCSCCTTCCGGGCHHHHHHTTT
T ss_pred             ccccCCceEEEechhhcCC--CCcCcccCCEEEEEcccccCCCC--c-EEEEEcH-HHHhhcccCCcchhhhhhhhhccC
Confidence            3457999999999986543  2333332 999999999997544  3 5565654 3333221110            01


Q ss_pred             cCCCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           68 EGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        68 ~g~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      ...+.++...+.+..+++.+      ..+.++..+++..+.+.|++.|.+..+.-     .|..        ..+.+++|
T Consensus       235 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~~~~--------~~~~~~~~  301 (360)
T 1w23_A          235 LYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHA-----EKGS--------RSLMNVTF  301 (360)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESS-----CGGG--------BCSSEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccC-----Cchh--------ccCcEEEE
Confidence            11234444445556666643      34567788899999999998875312210     1111        13458899


Q ss_pred             EeCCHHHHHHHHhhc
Q 027424          142 LTGSLALSKHVVETT  156 (223)
Q Consensus       142 ~~~~~~~~~~f~~~l  156 (223)
                      .+.+.....+|++.|
T Consensus       302 ~~~~~~~~~~~~~~l  316 (360)
T 1w23_A          302 NLRNEELNQQFLAKA  316 (360)
T ss_dssp             ECSSHHHHHHHHHHH
T ss_pred             EcCCCccHHHHHHHH
Confidence            886544566677664

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=98.93  E-value=1.9e-09  Score=95.07  Aligned_cols=109  Identities=14%  Similarity=0.052  Sum_probs=75.0

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc------cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|+++|+++|+|++++....    ..++      ..+.++++.|++|.++..+..+| ++++ ++++.+.+.........
T Consensus       207 ~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G-~~~~-~~~~~~~l~~~~~~~~~  284 (407)
T 3nra_A          207 LAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLG-VAFG-SRAIIARMEKLQAIVSL  284 (407)
T ss_dssp             HHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCE-EEEE-CHHHHHHHHHHHHHHTS
T ss_pred             HHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEE-EEEc-CHHHHHHHHHHHhhhcc
Confidence            47899999999999864221    1111      24567999999999986665554 5555 45677777666555555


Q ss_pred             CCChHhHHHHHhcHH----HHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           71 GLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        71 ~~sp~da~ll~~~l~----tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      +.++...+.+...++    .+..+.++..++...+.+.|+++|.+
T Consensus       285 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  329 (407)
T 3nra_A          285 RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGV  329 (407)
T ss_dssp             SSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             CCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            556665555555543    25666788888899999999988765

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=98.93  E-value=4.7e-09  Score=90.96  Aligned_cols=168  Identities=10%  Similarity=0.099  Sum_probs=104.1

Q ss_pred             ccCCEEEEecCCCCCCCc----CcccC-----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            4 AHGALLLVDNSIMSPVLS----RPLEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         4 ~~g~~lvVDnT~~s~~~~----~pl~~-----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      ++|+++|+|++++.....    .++..     +.++++.|++|.++..+..+ |+++. ++++.+.+......  .+.++
T Consensus       171 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~-~~~~~~~~~~~~~~--~~~~~  246 (354)
T 3ly1_A          171 PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRV-GYAVA-HPTVIALMGRYVAG--EKINF  246 (354)
T ss_dssp             CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCC-EEEEC-CHHHHHHHGGGTTC--SCCCH
T ss_pred             CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhh-eeeec-CHHHHHHHHHhcCC--CCCCH
Confidence            589999999998633221    22222     56699999999996555555 44545 45666665543333  34667


Q ss_pred             HhHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-CHHHHH
Q 027424           75 FDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSK  150 (223)
Q Consensus        75 ~da~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~~~~~~  150 (223)
                      ...+.+...++.   +..+.++..++...+.+.|+++ .+. + +|                +.|..+.+++. +.+...
T Consensus       247 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~-~-~~----------------~~~~~~~~~~~~~~~~~~  307 (354)
T 3ly1_A          247 SGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLP-Y-LP----------------SEGNFVFHQLVVPLKDYQ  307 (354)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CC----------------CCSSEEEEECSSCHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-E-CC----------------CCceEEEEECCCCHHHHH
Confidence            666655555543   5666788888999999999887 332 1 12                14566777774 333333


Q ss_pred             HHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHhcC
Q 027424          151 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-DVNDLISDLDKALRTG  221 (223)
Q Consensus       151 ~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE-d~~dL~~dl~~Al~~~  221 (223)
                      +.+..-++.   ++ |..      +                + .++.+|||++-+ |.+.+++.|++++++.
T Consensus       308 ~~l~~~gi~---v~-g~~------~----------------~-~~~~iRis~~~~~~i~~~~~~l~~~l~~~  352 (354)
T 3ly1_A          308 THMADAGVL---IG-RAF------P----------------P-ADNWCRISLGTPQEMQWVADTMREFRKKS  352 (354)
T ss_dssp             HHHHHTTEE---CC-CCC------T----------------T-CTTEEEEECCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCEE---Ee-ecC------C----------------C-CCCEEEEEcCCHHHHHHHHHHHHHHHHhh
Confidence            333332332   23 321      0                0 357899999954 5788888888888754

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=98.92  E-value=7.4e-09  Score=90.39  Aligned_cols=178  Identities=16%  Similarity=0.174  Sum_probs=103.2

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--------------
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--------------   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--------------   65 (223)
                      +|+++|+++|+|++++.+. ....-..|+|+++.|.+|+++|...  .|+++++ +++.+.+....              
T Consensus       173 l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  249 (393)
T 3kgw_A          173 LCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPG--ISLISFN-DKAKYKVYSRKTKPVSFYTDITYLA  249 (393)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSS--CEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHH
T ss_pred             HHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCc--eeEEEEC-HHHHHHHhccCCCCCceeecHHHHH
Confidence            4789999999999986332 2333346899999999998865432  4666555 45555543211              


Q ss_pred             Hhc---------CCCCChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhh
Q 027424           66 NAE---------GSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  131 (223)
Q Consensus        66 ~~~---------g~~~sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~  131 (223)
                      ...         ..+.++...+.+...++.     +..+.++..+++..+.+.|++. .+ ++..|.    +        
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~----~--------  315 (393)
T 3kgw_A          250 KLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GL-KFFVKD----P--------  315 (393)
T ss_dssp             HHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CBSSSS----G--------
T ss_pred             HhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CC-eeccCC----h--------
Confidence            111         123344444444455553     3455678888899999999887 33 222221    0        


Q ss_pred             hCCCCeeEEEEeC---CHHH-HHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe-cC--
Q 027424          132 AKGAGSVLSFLTG---SLAL-SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-GI--  204 (223)
Q Consensus       132 ~~g~ggl~sf~~~---~~~~-~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv-Gl--  204 (223)
                      ....+.++.|.+.   +.+. .+++.++.++.   +.-|..      +                 ..++.+|+|+ |.  
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~---v~~g~~------~-----------------~~~~~iRi~~~~~~~  369 (393)
T 3kgw_A          316 EIRLPTITTVTVPAGYNWRDIVSYVLDHFSIE---ISGGLG------P-----------------TEERVLRIGLLGYNA  369 (393)
T ss_dssp             GGBCSSEEEEECCTTBCHHHHHHHHHHHHCEE---CBCCCG------G-----------------GTTTEEEEECCGGGC
T ss_pred             hhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEE---EeCCcc------c-----------------CCCCEEEEEecccCC
Confidence            0124566778773   2222 23333332332   121210      0                 1356899998 75  


Q ss_pred             --CCHHHHHHHHHHHHhcC
Q 027424          205 --EDVNDLISDLDKALRTG  221 (223)
Q Consensus       205 --Ed~~dL~~dl~~Al~~~  221 (223)
                        ||.+.+++.|+++++..
T Consensus       370 ~~~~i~~~~~~l~~~l~~~  388 (393)
T 3kgw_A          370 TTENVDRVAEALREALQHC  388 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence              56788888888888754

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=98.91  E-value=4.7e-09  Score=91.93  Aligned_cols=106  Identities=19%  Similarity=0.119  Sum_probs=71.9

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|++++....    ..++++    +.++++.|++|.++..+..+| +++. ++++.+.+.......+.+.
T Consensus       186 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G-~~~~-~~~~~~~l~~~~~~~~~~~  263 (376)
T 2dou_A          186 LARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLG-FALG-SEEALARLERVKGVIDFNQ  263 (376)
T ss_dssp             HHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCE-EEEE-CHHHHHHHHHHHHHHCCCS
T ss_pred             HHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeE-EEec-CHHHHHHHHHHHHhcccCC
Confidence            37889999999999854321    123332    567999999999976665554 4555 4567777766555544456


Q ss_pred             ChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ++...+.+...++.    +..+.++..++...+.+.|+++
T Consensus       264 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  303 (376)
T 2dou_A          264 YAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV  303 (376)
T ss_dssp             CHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77666655555543    3444567778888899999887

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=98.91  E-value=6.6e-09  Score=90.50  Aligned_cols=190  Identities=17%  Similarity=0.166  Sum_probs=102.9

Q ss_pred             CccccCCEEEEecCCCCCCCcCccc---CCCcEEEecccccccCCcccceeEEEecChh-HHHHHHH---HHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYF---LQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~-~~~~l~~---~~~~~g~~~s   73 (223)
                      +|+++|++ |+|++++-+.  .|+.   +++|+++.|++|+++-.+  + |+++++++. +...+..   .......+.+
T Consensus       163 l~~~~~~~-i~D~a~~~g~--~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  236 (382)
T 4eb5_A          163 VLAGKAAL-HIDATASVGQ--IEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEAKLQPVILGGGQENGLRSGSEN  236 (382)
T ss_dssp             HHTTSSEE-EEECTTTBTT--BCCCHHHHTCSEEEEETGGGTCCSS--C-EEEEEETTCCCCCSSCSSCTGGGTSCSCCC
T ss_pred             HHHHCCCE-EEEcchhcCC--cccCccccCCCEEEeehHHhcCCCc--e-EEEEEccccccCceecCCCccccccCCCcc
Confidence            47899999 9999987332  2222   479999999999855222  3 445555542 2110000   0111122344


Q ss_pred             hHhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHH
Q 027424           74 PFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  149 (223)
Q Consensus        74 p~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~  149 (223)
                      +...+.+..+++.+    ..+.++..+++..+.+.|++.|.+ ++..|     +.        ...++++.|.+.+. ..
T Consensus       237 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~-----~~--------~~~~~~~~~~~~~~-~~  301 (382)
T 4eb5_A          237 VPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEES-YLNGH-----PE--------KRLPNNVNVRFSYI-EG  301 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTE-EECSC-----SS--------SBCTTEEEEEETTS-CH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCe-EEeCC-----cc--------cCCCCEEEEEeCCc-CH
Confidence            44344444455543    445677788889999999988776 34322     10        01467888887421 12


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC----CCeEEEEecC----CCHHHHHHHHHHHHh
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGI----EDVNDLISDLDKALR  219 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~----~~liRlsvGl----Ed~~dL~~dl~~Al~  219 (223)
                      .+|.+.|.--.+.++-|...+..      .+.  +.......|++    ++.+|||++.    ||.+.+++.|+++++
T Consensus       302 ~~~~~~l~~~gi~v~~g~~~~~~------~~~--~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (382)
T 4eb5_A          302 ESIVLSLDMAGIQASTGSACSSK------TLQ--PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE  371 (382)
T ss_dssp             HHHHHHHHHHTCBCBCCCGGGTS------SCC--CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEeccccccCC------CCc--ccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            23433332112223333221110      000  11223445654    6899999994    456777777777765

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=98.90  E-value=3.6e-09  Score=91.36  Aligned_cols=105  Identities=17%  Similarity=0.181  Sum_probs=65.9

Q ss_pred             CccccCCEEEEecCCCCCCCcCcc-cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH------------HH--
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------------LQ--   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl-~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~------------~~--   65 (223)
                      +|+++|+++|+|++++.+...-++ ++|+|+++.|++|+++|...  .|++++++ ++.+++..            ..  
T Consensus       156 l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T 1m32_A          156 LAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPG--FAFVIARE-QKLAACKGHSRSLSLDLYAQWRCM  232 (366)
T ss_dssp             HHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSS--EEEEEEEH-HHHTTCTTCCSCSTTCHHHHHHHH
T ss_pred             HHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCc--eEEEEECH-HHHHhhcCCCCCccccHHHHHhhh
Confidence            478999999999998644321122 35799999999998865432  27777664 34332211            00  


Q ss_pred             -HhcC---CCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcC
Q 027424           66 -NAEG---SGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        66 -~~~g---~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~  108 (223)
                       ...+   .+.++...+.+...++.+      ..+.++..+++..+.+.|++.
T Consensus       233 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~  285 (366)
T 1m32_A          233 EDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL  285 (366)
T ss_dssp             HHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC
Confidence             0001   245555555566666654      334577788888899999876

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=98.90  E-value=6e-09  Score=91.64  Aligned_cols=141  Identities=13%  Similarity=0.153  Sum_probs=89.6

Q ss_pred             CccccCCEEEEecCCCCCCCcC--cc-cCCCcEEEeccc--ccccCCcccceeEEEecChhH--HHHHHHHHHh------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR--PL-ELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERL--AKELYFLQNA------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~--pl-~~GADivv~S~t--K~l~G~~d~~~G~v~~~~~~~--~~~l~~~~~~------   67 (223)
                      +|+++|+++++|++++.+....  ++ .+| |+++.|++  |.++|.   .+|+++.+++.+  .+.++.....      
T Consensus       148 la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (388)
T 1b9h_A          148 ISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAG---EGGAVVFPDGETEKYETAFLRHSCGRPRDD  223 (388)
T ss_dssp             HHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSS---SCEEEEECTTCHHHHHHHHHHTBTTCCTTC
T ss_pred             HHHHcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCC---CeEEEEECCHHHHHHHHHHHHHhCCCCccC
Confidence            4789999999999997654332  22 233 88899876  778763   378787776545  4544432210      


Q ss_pred             -------cCC--CCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCee
Q 027424           68 -------EGS--GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  138 (223)
Q Consensus        68 -------~g~--~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl  138 (223)
                             .|.  .+++..++.+...++.+..++++..+++..+.+.|++.|.+ ++..|. +..         ....+.+
T Consensus       224 ~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~-~~~---------~~~~~~~  292 (388)
T 1b9h_A          224 RRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGV-VPQGGD-VRA---------DRNSHYM  292 (388)
T ss_dssp             SSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTC-EECCCC-TTC---------CBCCCSE
T ss_pred             ccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-cccCCC-cCC---------CccceEE
Confidence                   022  25667777777788888888888999999999999998876 333221 100         0124678


Q ss_pred             EEEEeCC--HHHHHHHHhhc
Q 027424          139 LSFLTGS--LALSKHVVETT  156 (223)
Q Consensus       139 ~sf~~~~--~~~~~~f~~~l  156 (223)
                      +.|.+.+  .....+|.+.|
T Consensus       293 ~~~~~~~~~~~~~~~l~~~L  312 (388)
T 1b9h_A          293 AMFRIPGLTEERRNALVDRL  312 (388)
T ss_dssp             EEEECTTCCHHHHHHHHHHH
T ss_pred             EEEEeCCcCcccHHHHHHHH
Confidence            8888843  12344454444

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=98.90  E-value=5e-08  Score=85.99  Aligned_cols=197  Identities=13%  Similarity=0.093  Sum_probs=115.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcc-cceeEEEecChhHHHHHHHHHHh------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQNA------------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d-~~~G~v~~~~~~~~~~l~~~~~~------------   67 (223)
                      +|+++|+++++|++++.+...+.-.+|++..+.|++|+.+..-. -.||+++.+++++.++++.....            
T Consensus       150 l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~  229 (390)
T 3b8x_A          150 IIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKV  229 (390)
T ss_dssp             HHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETT
T ss_pred             HHHHcCCEEEEECcCcccCEECCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCccccccccc
Confidence            47899999999999986654455567885555565554332211 14688888776666655543210            


Q ss_pred             -----------------cCC--CCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHH
Q 027424           68 -----------------EGS--GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  128 (223)
Q Consensus        68 -----------------~g~--~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  128 (223)
                                       .|.  .+++..+++.+..++.+..+.++..+++..+.+.|++.|.+. +..|  +.       
T Consensus       230 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~--~~-------  299 (390)
T 3b8x_A          230 TGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLD-VQQE--TG-------  299 (390)
T ss_dssp             TEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE-ECCC--CS-------
T ss_pred             cccccccccccccceeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-cCCC--CC-------
Confidence                             111  167777888877888888889999999999999999988763 3221  10       


Q ss_pred             HhhhCCCCeeEEEEeC-----CHHHHHHHHhhcCcceeccccCCCCCCCCC-Cccc--cC---CCCCHHHHHhcCCCCCe
Q 027424          129 YSQAKGAGSVLSFLTG-----SLALSKHVVETTKYFSITVSFGSVKSLISM-PCFM--SH---ASIPVEVRQARGLTEDL  197 (223)
Q Consensus       129 ~~~~~g~ggl~sf~~~-----~~~~~~~f~~~l~l~~~~~s~G~~~sli~~-p~~~--~h---~~~~~~~~~~~gi~~~l  197 (223)
                          ....-++.+.+.     +.+...+.++.-++. ..+.|++.  +-.. |...  .|   ..++..++.    ..+.
T Consensus       300 ----~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~-v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  368 (390)
T 3b8x_A          300 ----ESSWFGFSFIIKKDSGVIRKQLVENLNSAGIE-CRPIVTGN--FLKNTDVLKYFDYTVHNNVDNAEYL----DKNG  368 (390)
T ss_dssp             ----BCCCCEEEEEECTTSCCCHHHHHHHHHHTTBC-CBCSTTSS--GGGCHHHHTTCEEEESSCCHHHHHH----HHHE
T ss_pred             ----CcccEEEEEEecCcCcccHHHHHHHHHHCCCC-eeeecCCc--hhhcchhhhcCCCCCcCCChHHHHH----hcCE
Confidence                111223444543     344455555554544 34445432  2122 3211  11   123222221    2357


Q ss_pred             EEEEecCCCHHHHHHHHHHHH
Q 027424          198 VRISVGIEDVNDLISDLDKAL  218 (223)
Q Consensus       198 iRlsvGlEd~~dL~~dl~~Al  218 (223)
                      ||||++-.-.++=++.+.++|
T Consensus       369 l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          369 LFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             EEEECCSSCCHHHHHHHHHHT
T ss_pred             EEeeCCCCCCHHHHHHHHHhh
Confidence            999999887655555555554

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=98.89  E-value=4.4e-08  Score=87.26  Aligned_cols=108  Identities=18%  Similarity=0.199  Sum_probs=76.1

Q ss_pred             CccccCCEEEEecCCCCCC--CcCcccCCCcEEEecc--cccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~--~~~pl~~GADivv~S~--tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|++||+|++++.+.  ..+++..-.|+++.|+  +|.+++ +  .+|+++.+++++.+++......         
T Consensus       152 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~-g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~  228 (418)
T 2c81_A          152 IAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTA-G--EGGIIVTKNPRLFELIQQLRADSRVYCDDSS  228 (418)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCS-S--SCEEEEESCHHHHHHHHHHHBTTEEECSCGG
T ss_pred             HHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCC-C--CeEEEEECCHHHHHHHHHHHHhCcccccccc
Confidence            4789999999999987653  1223322358999998  999987 5  4787877666776666544321         


Q ss_pred             -----cC------------CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           68 -----EG------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        68 -----~g------------~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                           +.            ..+++..+.+....++.+..+.++..+++..+.+.|++.|.+
T Consensus       229 ~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~  289 (418)
T 2c81_A          229 ELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGI  289 (418)
T ss_dssp             GCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             ccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence                 00            013455565666667777788888889999999999988875

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=98.89  E-value=1.5e-08  Score=90.52  Aligned_cols=170  Identities=12%  Similarity=0.069  Sum_probs=103.8

Q ss_pred             ccc-----cCCEEEEecCCCCCCC----cCcc--c----CCC---cEEEecccccccCCcccceeEEEe--cChhHHHHH
Q 027424            2 AHA-----HGALLLVDNSIMSPVL----SRPL--E----LGA---DIVMHSATKFIAGHSDVMAGVLAV--KGERLAKEL   61 (223)
Q Consensus         2 a~~-----~g~~lvVDnT~~s~~~----~~pl--~----~GA---Divv~S~tK~l~G~~d~~~G~v~~--~~~~~~~~l   61 (223)
                      |++     +|+++|+|++++....    ..++  .    .+.   ++++.|++|.++.++..+|. +++  +++++.+.+
T Consensus       218 ~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~-~~~~~~~~~~~~~l  296 (430)
T 2x5f_A          218 IKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGF-MTFGTSDQTTKEVL  296 (430)
T ss_dssp             HHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEE-EEEBCCCHHHHHHH
T ss_pred             HHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEE-EEEecCCHHHHHHH
Confidence            567     9999999999864321    1232  1    244   68899999999867777665 545  245666666


Q ss_pred             HHHHHh----cCCCCChHhHHHHHhcHH-H---HHH---HHHHHHhHHHHHHHHHhcC--C-CeeEEEcCCCCCCcchHH
Q 027424           62 YFLQNA----EGSGLAPFDCWICLRGVK-T---MAL---RVEKQQDNAQKIAEFLASH--P-RVKKVNYAGLPEHPGHEL  127 (223)
Q Consensus        62 ~~~~~~----~g~~~sp~da~ll~~~l~-t---l~~---R~~~~~~na~~la~~L~~~--p-~v~~V~yP~l~~~~~~~~  127 (223)
                      ......    ...+.++...+.+...|+ .   ...   +.++..++...+.+.|+++  + .+ ++.-|          
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-~~~~~----------  365 (430)
T 2x5f_A          297 EAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHW-QAYDF----------  365 (430)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTE-EECCC----------
T ss_pred             HHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc-eeeCC----------
Confidence            554433    334567777777777777 3   232   4566778888888999843  1 33 22212          


Q ss_pred             HHhhhCCCCee-EEEEeC--CHH-HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec
Q 027424          128 HYSQAKGAGSV-LSFLTG--SLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG  203 (223)
Q Consensus       128 ~~~~~~g~ggl-~sf~~~--~~~-~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG  203 (223)
                             .||+ +.+.+.  +.. ..+++.+.-++.   +.-|                           .++.+|||++
T Consensus       366 -------~~g~~~~~~~~~~~~~~~~~~l~~~~gi~---v~~g---------------------------~~~~iRis~~  408 (430)
T 2x5f_A          366 -------NSGYFMAIKVHDVDPEALRKHLIDKYSIG---VIAL---------------------------NATDIRIAFS  408 (430)
T ss_dssp             -------CBSSEEEEEESSSCHHHHHHHHHHHHCEE---CEEC---------------------------SSSEEEEEGG
T ss_pred             -------CceEEEEeCCCCCCHHHHHHHHHHhCCEE---EecC---------------------------CCCeEEEEEe
Confidence                   2444 666664  222 223332212222   1111                           2467999999


Q ss_pred             ---CCCHHHHHHHHHHHHhc
Q 027424          204 ---IEDVNDLISDLDKALRT  220 (223)
Q Consensus       204 ---lEd~~dL~~dl~~Al~~  220 (223)
                         -|+.+.+++.|+++++.
T Consensus       409 ~~~~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          409 CVEKDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             GSCGGGHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh
Confidence               56688888888888764

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=98.89  E-value=1.8e-08  Score=91.96  Aligned_cols=172  Identities=13%  Similarity=0.167  Sum_probs=102.6

Q ss_pred             CccccCCEEEEecCCCCC------------C-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-HH
Q 027424            1 MAHAHGALLLVDNSIMSP------------V-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------------~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-~~   66 (223)
                      +||++|++|+||++++..            . .+++...|+|+++.|.+|++.|+.  -.|+++++++.+....... ..
T Consensus       231 la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~  308 (497)
T 3mc6_A          231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPK--GSSVIMYRNSDLRMHQYYVNPA  308 (497)
T ss_dssp             HHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCS--SCEEEECSSHHHHTTTSCCBTT
T ss_pred             HHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCC--CceeEEecCHHHHhhhhccccc
Confidence            478999999999998732            1 134455699999999999986542  2466767665432211000 01


Q ss_pred             hcCCC---C---C------hHhHHHHHhcHHH--HHHHHHHHHhHHHHHHHHHhcC-CCeeEEEcCCCCCCcchHHHHhh
Q 027424           67 AEGSG---L---A------PFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQ  131 (223)
Q Consensus        67 ~~g~~---~---s------p~da~ll~~~l~t--l~~R~~~~~~na~~la~~L~~~-p~v~~V~yP~l~~~~~~~~~~~~  131 (223)
                      ..+..   .   +      ....|..++.+..  +..++++..+++..+++.|+++ |.+. +..|              
T Consensus       309 ~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~-~~~~--------------  373 (497)
T 3mc6_A          309 WTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLD-IMGN--------------  373 (497)
T ss_dssp             CTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCE-ECSC--------------
T ss_pred             ccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE-EecC--------------
Confidence            11110   0   0      2224444444443  4667789999999999999994 7763 4333              


Q ss_pred             hCCCCeeEEEEeCC--HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec---CCC
Q 027424          132 AKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IED  206 (223)
Q Consensus       132 ~~g~ggl~sf~~~~--~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG---lEd  206 (223)
                        ..+++++|...+  .....+.+..-++.   .+.+.                          .+..+|+++.   .|+
T Consensus       374 --~~~~~v~~~~~~~~~~~l~~~L~~~Gi~---v~~~~--------------------------~~~~~ri~~~~~t~e~  422 (497)
T 3mc6_A          374 --PRYSVISFSSKTLNIHELSDRLSKKGWH---FNALQ--------------------------KPVALHMAFTRLSAHV  422 (497)
T ss_dssp             --CCSSEEEEECTTTTHHHHHHHHHTTTCB---CEECC--------------------------SSCCEEEECCTTTTCT
T ss_pred             --CCeeEEEEeCCCCCHHHHHHHHHhCCEE---EecCC--------------------------CCCeEEEEEeCCCHHH
Confidence              146788888642  22232223222322   11000                          1223677775   788


Q ss_pred             HHHHHHHHHHHHhc
Q 027424          207 VNDLISDLDKALRT  220 (223)
Q Consensus       207 ~~dL~~dl~~Al~~  220 (223)
                      .++++++|+++++.
T Consensus       423 i~~~~~~L~~~l~~  436 (497)
T 3mc6_A          423 VDEICDILRTTVQE  436 (497)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999874

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=98.88  E-value=6.3e-09  Score=91.43  Aligned_cols=106  Identities=10%  Similarity=0.112  Sum_probs=70.8

Q ss_pred             CccccCCEEEEecCCCCCCCc----Ccc-c----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RPL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~pl-~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++.....    .++ .    .+.|+++.|++|.++..+..+ |+++++ +++.+.+.........+
T Consensus       188 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~-~~~~~~l~~~~~~~~~~  265 (389)
T 1gd9_A          188 FVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL-GFVAAP-SWIIERMVKFQMYNATC  265 (389)
T ss_dssp             HHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCC-EEEECC-HHHHHHHHHHHTTTTCS
T ss_pred             HHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccce-EEEEEC-HHHHHHHHHHHhhhccC
Confidence            378999999999998654321    112 2    357999999999997666555 556554 56767776555444445


Q ss_pred             CChHhHHHHHhcHHH------HHHHHHHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~t------l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .++...+.+...|+.      +..+.++..++...+.+.|+++
T Consensus       266 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  308 (389)
T 1gd9_A          266 PVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM  308 (389)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            666655555555543      2334466778888888889886

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=98.88  E-value=8.2e-08  Score=83.72  Aligned_cols=104  Identities=14%  Similarity=0.013  Sum_probs=71.1

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc---------cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl---------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~   67 (223)
                      +|+++|+++|+|++++....    ...+         ..+.++++.|++|.++..+..+|. ++. ++++.+.+......
T Consensus       182 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~-~~~-~~~~~~~~~~~~~~  259 (376)
T 3ezs_A          182 LALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGF-IAG-DSRLLEKYKAFRAY  259 (376)
T ss_dssp             HHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEE-EEE-CHHHHHHHHHHHTT
T ss_pred             HHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEE-Eee-CHHHHHHHHHHHhh
Confidence            37899999999999865322    1111         457889999999999766666655 544 55677777666555


Q ss_pred             cCCCCChHhHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHh
Q 027424           68 EGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLA  106 (223)
Q Consensus        68 ~g~~~sp~da~ll~~~l~t---l~~R~~~~~~na~~la~~L~  106 (223)
                      .+.+.++...+.+...++.   +..+.++..++...+.+.|+
T Consensus       260 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  301 (376)
T 3ezs_A          260 LGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK  301 (376)
T ss_dssp             TCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST
T ss_pred             hcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            5556677666666666654   44455666777777777776

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=98.88  E-value=7e-09  Score=91.10  Aligned_cols=109  Identities=16%  Similarity=0.117  Sum_probs=73.6

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCccc---CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|+++|+++|+|++++....       ...+.   .+.|+++.|++|+++.++..+ |++++ ++++.+.+.........
T Consensus       191 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~-~~~~~~~l~~~~~~~~~  268 (388)
T 1j32_A          191 VAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRV-GFLAG-PVPLVKAATKIQGHSTS  268 (388)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCC-EEEEC-CHHHHHHHHHHHHTTTC
T ss_pred             HHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccce-EEEEe-CHHHHHHHHHHHhhccc
Confidence            37889999999999864321       11121   468999999999997666555 55555 45676766665554444


Q ss_pred             CCChHhHHHHHhcHH----HHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           71 GLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        71 ~~sp~da~ll~~~l~----tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ..++...+.+...++    .+..+.++..++...+.+.|++.|.+
T Consensus       269 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  313 (388)
T 1j32_A          269 NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGL  313 (388)
T ss_dssp             SCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            566665555555554    24455677788888999999988765

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=98.87  E-value=1.3e-08  Score=90.33  Aligned_cols=106  Identities=8%  Similarity=-0.000  Sum_probs=71.7

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCccc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++....       ...+.  .+.|+++.|++|+++..+..+| ++++ ++++.+.+.......+.+
T Consensus       200 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G-~~~~-~~~~~~~l~~~~~~~~~~  277 (412)
T 2x5d_A          200 LAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIG-FMVG-NPELVSALARIKSYHDYG  277 (412)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCE-EEEE-CHHHHHHHHHHHHHHCCC
T ss_pred             HHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceE-EEEc-CHHHHHHHHHHHhhhccC
Confidence            37889999999999865331       11121  3678999999999976665554 4555 456767776655544455


Q ss_pred             CChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .++...+.+...|+.    +....++..++...+.+.|+++
T Consensus       278 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (412)
T 2x5d_A          278 TFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA  318 (412)
T ss_dssp             CCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            677766666666654    3444566778888888888876

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=98.87  E-value=8.9e-09  Score=89.98  Aligned_cols=106  Identities=11%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|++++....    .....    .+.|+++.|++|.++..+..+ |+++++ +++.+.+.........+.
T Consensus       178 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~-~~~~~~~~~~~~~~~~~~  255 (370)
T 2z61_A          178 FAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRI-GYVISN-DEIIEAILKLQQNLFISA  255 (370)
T ss_dssp             HHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCC-EEEECC-HHHHHHHHHHHHHHTSSS
T ss_pred             HHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceE-EEEEEC-HHHHHHHHHHHhhcccCC
Confidence            47899999999999864322    12222    378999999999997566554 556554 467777766555444456


Q ss_pred             ChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ++...+.+...|+.     +..+.++..++...+.+.|+++
T Consensus       256 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  296 (370)
T 2z61_A          256 PTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF  296 (370)
T ss_dssp             CHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            77777777777754     2334466677888888888876

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=98.87  E-value=3.5e-08  Score=87.92  Aligned_cols=180  Identities=15%  Similarity=0.116  Sum_probs=106.9

Q ss_pred             CccccCCEEEEecCCCCCCC--cCcc------------cCCCcEEEecccccccCCcccceeEEEecChhHHH-H-----
Q 027424            1 MAHAHGALLLVDNSIMSPVL--SRPL------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-E-----   60 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~--~~pl------------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~-~-----   60 (223)
                      +|+++|+++|+|++++....  ..|+            ..+.++++.|++|.++..+..+| +++++ +++.+ .     
T Consensus       210 ~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G-~~~~~-~~~~~~~~~~~~  287 (437)
T 3g0t_A          210 LATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIG-VLMIS-GKLYEREYPDLE  287 (437)
T ss_dssp             HHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCE-EEEEC-HHHHHCBCGGGH
T ss_pred             HHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeE-EEEEC-HHHhhhhhhccc
Confidence            47899999999999863211  1122            24667999999999976665554 45554 45555 4     


Q ss_pred             ------------HHHHHHhcCCCCChHhHHHHHhcHHH-------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCC
Q 027424           61 ------------LYFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  121 (223)
Q Consensus        61 ------------l~~~~~~~g~~~sp~da~ll~~~l~t-------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~  121 (223)
                                  +.........+.++...+.+...++.       +..+.++..++...+.+.|+++ .+ ++.+|.-..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~  365 (437)
T 3g0t_A          288 ESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GF-NIVYDKDGN  365 (437)
T ss_dssp             HHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TE-EESSCEETT
T ss_pred             ccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-EEeccccCC
Confidence                        44444333345677777777777766       4455688888999999999988 44 444221100


Q ss_pred             CcchHHHHhhhCCCCeeEEEEeC--CHHH-HHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCC-CCCe
Q 027424          122 HPGHELHYSQAKGAGSVLSFLTG--SLAL-SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL-TEDL  197 (223)
Q Consensus       122 ~~~~~~~~~~~~g~ggl~sf~~~--~~~~-~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi-~~~l  197 (223)
                      .|         ...|..+.+.+.  +.+. .+++.++ ++.   +.-|...                      +. .++.
T Consensus       366 ~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~---v~~~~~~----------------------~~~~~~~  410 (437)
T 3g0t_A          366 EP---------LADGFYFTVGYKGMDSSKLIEKFVRY-GMC---AITLKTT----------------------GSKRNEA  410 (437)
T ss_dssp             EE---------CCSSSEEEEEETTCCHHHHHHHHHHT-TEE---CEESTTT----------------------TCCCTTC
T ss_pred             CC---------CceeEEEEEecCCCCHHHHHHHHHHc-CeE---Eeecccc----------------------CCCCCCE
Confidence            01         023555666664  3222 2332222 332   1111110                      00 2367


Q ss_pred             EEEEecC---CCHHHHHHHHHHHHh
Q 027424          198 VRISVGI---EDVNDLISDLDKALR  219 (223)
Q Consensus       198 iRlsvGl---Ed~~dL~~dl~~Al~  219 (223)
                      +|||+|.   |+.+.+++.|.++++
T Consensus       411 iRis~~~~~~e~i~~~~~~l~~~~~  435 (437)
T 3g0t_A          411 MRICTSLLPESQFPDLEKRLQMLNA  435 (437)
T ss_dssp             EEEECSSSCGGGHHHHHHHHHHHHH
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHh
Confidence            9999995   567777777777765

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=98.87  E-value=6.8e-09  Score=93.90  Aligned_cols=180  Identities=13%  Similarity=0.053  Sum_probs=103.2

Q ss_pred             cCCEEEEecCCCCCCC---cC--ccc---CCCcEEEecccccccCCcccceeEEEecChhHH-HHHHHHHHhcCC-----
Q 027424            5 HGALLLVDNSIMSPVL---SR--PLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNAEGS-----   70 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~---~~--pl~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~-~~l~~~~~~~g~-----   70 (223)
                      +|++++||++++....   ..  +..   .|+|+++.|.||++.++..  +|+++++++.+. +.+.....+.+.     
T Consensus       222 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (452)
T 2dgk_A          222 IDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTF  299 (452)
T ss_dssp             CCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECCTTCCEEEC
T ss_pred             CCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCC--eEEEEEcCHHHHHHHhccCccccCCCCCCc
Confidence            4999999999875421   11  122   2899999999998865432  567777665432 222110111110     


Q ss_pred             ----CC---ChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           71 ----GL---APFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        71 ----~~---sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                          +.   .....|..++  +.+.+..++++..+++..+++.|++.|.+ ++..|+.+.            ...++++|
T Consensus       300 ~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~~~~~------------~~~~~v~f  366 (452)
T 2dgk_A          300 AINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPY-EFICTGRPD------------EGIPAVCF  366 (452)
T ss_dssp             CSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSE-EEEEECCTT------------TBSSEEEE
T ss_pred             ccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCe-EEecCCCCC------------CCeEEEEE
Confidence                11   1122333333  33456777899999999999999999876 455564311            14678999


Q ss_pred             EeCCH----HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHH
Q 027424          142 LTGSL----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISD  213 (223)
Q Consensus       142 ~~~~~----~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~d  213 (223)
                      .+.+.    ....++.+.|.-  .+..++..    ..|..     +       .  ..+.+|+|+|-    ||.+.++++
T Consensus       367 ~~~~~~~~~~~~~~l~~~L~~--~Gi~v~~~----~~~~~-----~-------~--~~~~lRis~~~~~t~e~id~li~~  426 (452)
T 2dgk_A          367 KLKDGEDPGYTLYDLSERLRL--RGWQVPAF----TLGGE-----A-------T--DIVVMRIMCRRGFEMDFAELLLED  426 (452)
T ss_dssp             EECTTCCCSCCHHHHHHHHHH--TTCBCCEE----ECSTT-----C-------T--TCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             EecCcccccCCHHHHHHHHHh--cCCeeeee----eCCcc-----c-------C--CeEEEEEEecCCCCHHHHHHHHHH
Confidence            88431    011233333321  11111110    01110     0       0  24689999995    788999999


Q ss_pred             HHHHHh
Q 027424          214 LDKALR  219 (223)
Q Consensus       214 l~~Al~  219 (223)
                      |+++++
T Consensus       427 l~~~~~  432 (452)
T 2dgk_A          427 YKASLK  432 (452)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988876

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=98.87  E-value=1e-08  Score=89.33  Aligned_cols=106  Identities=12%  Similarity=0.127  Sum_probs=72.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHh
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD   76 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~d   76 (223)
                      +|+++|+++|+|++++......++.    .+.++++.|++|.++..+..+| +++. ++++.+.+......  ...++..
T Consensus       174 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G-~~~~-~~~~~~~~~~~~~~--~~~~~~~  249 (360)
T 3hdo_A          174 LARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIG-LAIA-RPEVIAALDKIRDH--YNLDRLA  249 (360)
T ss_dssp             HHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCE-EEEC-CHHHHHHHHHHSCS--CCSCHHH
T ss_pred             HHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCcccee-eEee-CHHHHHHHHHhCCC--CCCCHHH
Confidence            4678999999999986421112222    3456999999999976666655 4544 56676666554332  3467766


Q ss_pred             HHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           77 CWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        77 a~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      .+.+...++.   +..+.++..++...+.+.|+++ .+
T Consensus       250 ~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~  286 (360)
T 3hdo_A          250 QAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GY  286 (360)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            6666666654   4566788888999999999987 44

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.87  E-value=5.7e-08  Score=86.30  Aligned_cols=106  Identities=18%  Similarity=0.227  Sum_probs=71.1

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|++++....    ...+.  .+.|+++.|++|.++..+..+ |+++++++++.+.+........ +.++
T Consensus       202 ~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~l~~~l~~~~~~~~-~~~~  279 (409)
T 2gb3_A          202 IAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARV-GCLITRNEELISHAMKLAQGRL-APPL  279 (409)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCC-EEEECSCHHHHHHHHHHHHHSC-CCCH
T ss_pred             HHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceE-EEEEECcHHHHHHHHHHHhccC-CCCH
Confidence            47899999999999864321    11122  367999999999997566444 5566666467677665554443 5667


Q ss_pred             HhHHHHHhcHH----HHHHHHHHHHhHHHHHHHHHhcC
Q 027424           75 FDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        75 ~da~ll~~~l~----tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      ...+.+...|+    .+....++..++...+.+.|+++
T Consensus       280 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  317 (409)
T 2gb3_A          280 LEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH  317 (409)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            65555555553    23444566778888888889876

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=98.86  E-value=2.8e-08  Score=87.63  Aligned_cols=180  Identities=16%  Similarity=0.118  Sum_probs=100.3

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--------------   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--------------   65 (223)
                      +|+++|+++|+|++++.+.. .+.-++|+|+++.|.+|++.|...  .|+++.+ +++.+.+....              
T Consensus       161 l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g--~g~~~~~-~~~~~~~~~~~~~~~Gw~~~~~~~~  237 (416)
T 3isl_A          161 ACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSG--MAPITYN-ERVADVIAARKKVERGIATQADRAA  237 (416)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSS--EEEEEEC-HHHHHHHHTC---------------
T ss_pred             HHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCC--eEEEEEC-HHHHHHhhccccccccccccccchh
Confidence            47899999999999865433 333446899999999998766542  4666554 45555443110              


Q ss_pred             ------------------H------hcCCCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEc
Q 027424           66 ------------------N------AEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNY  116 (223)
Q Consensus        66 ------------------~------~~g~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~y  116 (223)
                                        .      ....+.+......+..+++.+     ..+.++..+++..+.+.|++. .+ ++..
T Consensus       238 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~  315 (416)
T 3isl_A          238 LSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GL-RLFG  315 (416)
T ss_dssp             ---CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CBCS
T ss_pred             ccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CC-Eecc
Confidence                              0      011123343333444455443     345577778888888888873 43 2222


Q ss_pred             CCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcC-cceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCC
Q 027424          117 AGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  195 (223)
Q Consensus       117 P~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~-l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~  195 (223)
                      |     +        ....+.++.|.+.......+|.+.|. -..+.++-|.      .                 ...+
T Consensus       316 ~-----~--------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~------~-----------------~~~~  359 (416)
T 3isl_A          316 D-----D--------SCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSF------G-----------------PLAG  359 (416)
T ss_dssp             C-----G--------GGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCC------S-----------------TTTT
T ss_pred             C-----c--------cccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCC------C-----------------CCCC
Confidence            2     0        01247788888731111223333331 1112222221      0                 1245


Q ss_pred             CeEEEEe-c---CCC-HHHHHHHHHHHHhcC
Q 027424          196 DLVRISV-G---IED-VNDLISDLDKALRTG  221 (223)
Q Consensus       196 ~liRlsv-G---lEd-~~dL~~dl~~Al~~~  221 (223)
                      +.+|||+ +   -|+ .+.+++.|+++++..
T Consensus       360 ~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~  390 (416)
T 3isl_A          360 KIWRIGTMGYSCRKENVLFVLAGLEAVLLRH  390 (416)
T ss_dssp             TEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence            7899999 3   234 677788888777643

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=98.86  E-value=4.9e-08  Score=85.87  Aligned_cols=179  Identities=16%  Similarity=0.193  Sum_probs=104.8

Q ss_pred             CccccCCEEEEecCCCCC-----CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC-CCCCh
Q 027424            1 MAHAHGALLLVDNSIMSP-----VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-----~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g-~~~sp   74 (223)
                      +|+++|+++|+|++++-+     ....+++ ++|+++.|++|+++|..   ||+++++ +++.+.+........ .+.++
T Consensus       186 l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~~~g~~---gG~~~~~-~~~~~~l~~~~~~~~~~~~~~  260 (405)
T 2vi8_A          186 IADEVGAYLMVDMAHIAGLVAAGLHPNPVP-YAHFVTTTTHKTLRGPR---GGMILCQ-EQFAKQIDKAIFPGIQGGPLM  260 (405)
T ss_dssp             HHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSEEEEESSSTTCCCS---CEEEEEC-HHHHHHHHHHHTTTTCSSCCH
T ss_pred             HHHHcCCEEEEEccccccccccCcCCCccc-cCCEEEEeccccCCCCC---CeEEEEc-HHHHHHHHhhhcccccCCCCH
Confidence            478999999999998621     1111222 68999999999998542   4878765 566666654432221 12344


Q ss_pred             HhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC----C
Q 027424           75 FDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----S  145 (223)
Q Consensus        75 ~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~----~  145 (223)
                      .....+..+++.     +....++..+++..+.+.|++. ++ ++..|               .+.+.++.+.+.    +
T Consensus       261 ~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~---------------~~~~~~~~~~~~~~~~~  323 (405)
T 2vi8_A          261 HVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GF-TLVSG---------------GTDNHLLLVDLRPQQLT  323 (405)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TC-EEGGG---------------SCSSSEEEEECGGGTCC
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CC-eEecC---------------CCCceEEEEEccCCCCC
Confidence            333333344443     3455677788888899999887 44 34333               123567777763    2


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC--------CCHHHHHHHHHHH
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------EDVNDLISDLDKA  217 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl--------Ed~~dL~~dl~~A  217 (223)
                      .....+.+..-++.   +.-|..      |.   |.. .       ...++.+|+|++.        |+.+.+++-|+++
T Consensus       324 ~~~~~~~l~~~gi~---v~~g~~------~~---~~~-~-------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~  383 (405)
T 2vi8_A          324 GKTAEKVLDEVGIT---VNKNTI------PY---DPE-S-------PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV  383 (405)
T ss_dssp             HHHHHHHHHHHTEE---CEEECC------TT---CSS-C-------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCce---eccCcC------cc---ccC-C-------CCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHH
Confidence            33333333333332   121211      10   000 0       0124569999994        6788999999998


Q ss_pred             HhcC
Q 027424          218 LRTG  221 (223)
Q Consensus       218 l~~~  221 (223)
                      ++..
T Consensus       384 ~~~~  387 (405)
T 2vi8_A          384 LKNV  387 (405)
T ss_dssp             HTCT
T ss_pred             Hhcc
Confidence            8764

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.85  E-value=3.9e-08  Score=87.92  Aligned_cols=175  Identities=12%  Similarity=0.122  Sum_probs=104.4

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-c---CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-E---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|++++....    ..++ .   .+.++++.|++|.++ .+..+ |+++++ +++.+.+.........+.
T Consensus       216 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~-~~~~~~l~~~~~~~~~~~  292 (425)
T 1vp4_A          216 IAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRI-GMVAGS-KEFIRKIVQAKQSADLCS  292 (425)
T ss_dssp             HHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCE-EEEECC-HHHHHHHHHHHHHHHSSC
T ss_pred             HHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccce-EEEeeC-HHHHHHHHHHhhhhcCCC
Confidence            37889999999999865321    1122 1   256799999999998 55444 556555 567676665544333345


Q ss_pred             ChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcC-C---CeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           73 APFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASH-P---RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        73 sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~-p---~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      ++...+.+...|+..      ..+.++..++...+.+.|+++ |   .+ ++..|                ..|.++.++
T Consensus       293 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~-~~~~~----------------~~g~~~~~~  355 (425)
T 1vp4_A          293 PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGV-KWVKS----------------EGGLFIWLT  355 (425)
T ss_dssp             CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTC-EECCC----------------SBSSEEEEE
T ss_pred             CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCce-EEecC----------------CccEEEEEE
Confidence            777777777777652      233455667888888888874 5   23 33323                134566677


Q ss_pred             eCC----HHHHHHHHhhcCcce-eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHH
Q 027424          143 TGS----LALSKHVVETTKYFS-ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDL  214 (223)
Q Consensus       143 ~~~----~~~~~~f~~~l~l~~-~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl---Ed~~dL~~dl  214 (223)
                      +..    .+..+++.++ ++.- .+..++..                       +-.++.+|||++.   |+.+.+++.|
T Consensus       356 ~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~-----------------------~~~~~~iRis~~~~~~e~i~~~l~~l  411 (425)
T 1vp4_A          356 LPEGFDTWEMFEYAKRK-KVFYVPGRVFKVY-----------------------DEPSPSMRLSFCLPPDEKIVEGIKRL  411 (425)
T ss_dssp             CCTTCCTTTTHHHHHHH-TEECEEGGGGCTT-----------------------CCCCSEEEEECSSSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHC-CCEEECchhhcCC-----------------------CCCCCeEEEEeCCCCHHHHHHHHHHH
Confidence            631    2223444444 4331 11111100                       0135789999997   4566677777


Q ss_pred             HHHHh
Q 027424          215 DKALR  219 (223)
Q Consensus       215 ~~Al~  219 (223)
                      +++++
T Consensus       412 ~~~l~  416 (425)
T 1vp4_A          412 REVVL  416 (425)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77765

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=98.85  E-value=3e-07  Score=80.70  Aligned_cols=106  Identities=12%  Similarity=0.079  Sum_probs=75.0

Q ss_pred             CccccCCEEEEecCCCCCCCc--Ccc-----------cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh
Q 027424            1 MAHAHGALLLVDNSIMSPVLS--RPL-----------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~--~pl-----------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~   67 (223)
                      +|+++|+++|+|++++.....  .|+           ..+.++++.|++|.++..+..+|. ++. ++++.+.+......
T Consensus       196 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~-~~~-~~~~~~~~~~~~~~  273 (396)
T 3jtx_A          196 LQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGF-VAG-DAELLKNFLLYRTY  273 (396)
T ss_dssp             HHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEE-EEE-CHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEE-EEe-CHHHHHHHHHHHhh
Confidence            378899999999998643221  122           257889999999988777766654 544 56677777766665


Q ss_pred             cCCCCChHhHHHHHhcHH---HHHHHHHHHHhHHHHHHHHHhcC
Q 027424           68 EGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        68 ~g~~~sp~da~ll~~~l~---tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      .+.+.++...+.+...++   .+..+.++..++...+.+.|+++
T Consensus       274 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  317 (396)
T 3jtx_A          274 HGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV  317 (396)
T ss_dssp             HTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            566677776666666664   34555677778888888899876

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=98.85  E-value=4e-09  Score=95.55  Aligned_cols=176  Identities=13%  Similarity=0.084  Sum_probs=101.7

Q ss_pred             CccccCCEEEEecCCCCCCCc-CcccCCCcEEEeccccccc-CCcccceeEEEecChhHHHHHHH-------------H-
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA-GHSDVMAGVLAVKGERLAKELYF-------------L-   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~pl~~GADivv~S~tK~l~-G~~d~~~G~v~~~~~~~~~~l~~-------------~-   64 (223)
                      +||++|+++++|++++.+... +.-++|+|+++.|.+|+++ |+. .+|+ +.+++ ++.+.+..             . 
T Consensus       239 la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~-~~g~-l~~~~-~~~~~~~~~~~g~~~~~~~~~~~  315 (465)
T 3e9k_A          239 AGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAG-GIAG-AFIHE-KHAHTIKPALVGWFGHELSTRFK  315 (465)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTT-CCCE-EEECG-GGTTTSCCSSCCGGGBCHHHHTT
T ss_pred             HHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCC-ceEE-EEEcH-HHHhhcCCcccCccCCCCCcccc
Confidence            479999999999999876532 2224689999999999995 443 3444 44554 33222110             0 


Q ss_pred             -----------HHhcCCCCChHhHHHHHhcHHHHH-----HHHHHHHhHHHHHHHHHhcC----------CCeeEEEcCC
Q 027424           65 -----------QNAEGSGLAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASH----------PRVKKVNYAG  118 (223)
Q Consensus        65 -----------~~~~g~~~sp~da~ll~~~l~tl~-----~R~~~~~~na~~la~~L~~~----------p~v~~V~yP~  118 (223)
                                 ......+.++.....+..+++.+.     ...++..+++..+.+.|++.          |.+ ++..|.
T Consensus       316 ~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~-~~~~p~  394 (465)
T 3e9k_A          316 MDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVV-NIITPS  394 (465)
T ss_dssp             CCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CE-EECSCS
T ss_pred             cCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCe-EEeCCC
Confidence                       000011445555666666766643     23355566666677777764          444 444441


Q ss_pred             CCCCcchHHHHhhhCCCCeeEEEEeC-CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCe
Q 027424          119 LPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL  197 (223)
Q Consensus       119 l~~~~~~~~~~~~~~g~ggl~sf~~~-~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~l  197 (223)
                      -            ....|++++|.+. +.....+.+..-+++.   .+                           -.++.
T Consensus       395 ~------------~~~~g~~~~~~~~~~~~~l~~~L~~~Gi~v---~~---------------------------~~~~~  432 (465)
T 3e9k_A          395 H------------VEERGCQLTITFSVPNKDVFQELEKRGVVC---DK---------------------------RNPNG  432 (465)
T ss_dssp             S------------GGGBCSCEEEEECCTTCCHHHHHHTTTEEC---EE---------------------------ETTTE
T ss_pred             C------------HhhcccEEEEEecCCHHHHHHHHHHCCEEE---ec---------------------------CCCCE
Confidence            1            1225889999884 2222223333333331   10                           03578


Q ss_pred             EEEEe-----cCCCHHHHHHHHHHHHhcCC
Q 027424          198 VRISV-----GIEDVNDLISDLDKALRTGP  222 (223)
Q Consensus       198 iRlsv-----GlEd~~dL~~dl~~Al~~~~  222 (223)
                      ||+|+     ..||++++++.|+++++..+
T Consensus       433 iRis~~~~~~t~edi~~~~~~l~~~l~~~~  462 (465)
T 3e9k_A          433 IRVAPVPLYNSFHDVYKFTNLLTSILDSAE  462 (465)
T ss_dssp             EEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred             EEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence            99998     46778889999999987653

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.84  E-value=4.1e-08  Score=84.48  Aligned_cols=176  Identities=12%  Similarity=-0.013  Sum_probs=98.2

Q ss_pred             Ccccc--CCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHH---------HHH----H
Q 027424            1 MAHAH--GALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE---------LYF----L   64 (223)
Q Consensus         1 ia~~~--g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~---------l~~----~   64 (223)
                      +|+++  |+++++|++++.+.. ...-++|+|+++.|++|++.|...  .|++++++ ++.++         +..    .
T Consensus       146 l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  222 (352)
T 1iug_A          146 AFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPG--LGFVALSP-RALERLKPRGYYLDLARELKAQ  222 (352)
T ss_dssp             HHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSC--EEEEEECH-HHHHTCCCCSSTTCHHHHHHHH
T ss_pred             HHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCc--eeEEEECH-HHHHHhhCCCceeeHHHHHhhc
Confidence            47888  999999999863321 122235799999999997776532  36666654 33332         221    1


Q ss_pred             H-HhcCCCCChHhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeE
Q 027424           65 Q-NAEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  139 (223)
Q Consensus        65 ~-~~~g~~~sp~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~  139 (223)
                      . .....+.++.....+...++.+    ..+.++..+++..+.+.|++. ++ ++..|.               ..++++
T Consensus       223 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~---------------~~~~~~  285 (352)
T 1iug_A          223 KEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GL-RPVPKR---------------FSPAVA  285 (352)
T ss_dssp             TTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TC-EESCSS---------------BCTTCE
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC-cccccc---------------cCCeEE
Confidence            0 1122234444444445555543    345677788888999999886 44 343221               146788


Q ss_pred             EEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHH
Q 027424          140 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  215 (223)
Q Consensus       140 sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~  215 (223)
                      .|.+.+.....+|.+.|.--.+.+.-|.      .+                 ..++.+|||++.    |+.+.+++.|+
T Consensus       286 ~~~~~~~~~~~~~~~~l~~~gi~v~~~~------~~-----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~  342 (352)
T 1iug_A          286 AFYLPEGVPYARVKEAFAQRGAVIAGGQ------GP-----------------LKGKVFRLSLMGAYDRYEALGVAGMFR  342 (352)
T ss_dssp             EEECCTTCCHHHHHHHHHTTTEECEECC------GG-----------------GTTTEEEECCCSSCCHHHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHHCCEEEEeCC------Cc-----------------cCCCEEEEEccccCCHHHHHHHHHHHH
Confidence            8887411112334433321112222221      00                 035789999995    45566666666


Q ss_pred             HHHh
Q 027424          216 KALR  219 (223)
Q Consensus       216 ~Al~  219 (223)
                      ++++
T Consensus       343 ~~~~  346 (352)
T 1iug_A          343 EVLE  346 (352)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=98.84  E-value=1.5e-08  Score=89.54  Aligned_cols=175  Identities=15%  Similarity=0.160  Sum_probs=101.9

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCCCc------EEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELGAD------IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~GAD------ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g   69 (223)
                      +|+++|+++|+|++++....     .....++.|      +++.|++|+++ .+..+ |+++++ +++.+.+........
T Consensus       191 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~-~~~~~~l~~~~~~~~  267 (397)
T 2zyj_A          191 MVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRV-AFAVAH-PEALQKLVQAKQGAD  267 (397)
T ss_dssp             HHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCC-EEEECC-HHHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-cccee-EEEecC-HHHHHHHHHHHHhhc
Confidence            37889999999999865322     112234444      89999999998 55444 556554 567676665443332


Q ss_pred             CCCChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcC-C-CeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           70 SGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASH-P-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~-p-~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      .+.++...+.+...|+.     +..+.++..++...+.+.|+++ | .+ ++..|                ..|.++.++
T Consensus       268 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~-~~~~~----------------~~g~~~~~~  330 (397)
T 2zyj_A          268 LHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEV-RYTRP----------------KGGMFVWME  330 (397)
T ss_dssp             SSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS-EECCC----------------SBSSEEEEE
T ss_pred             CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCe-EEccC----------------CccEEEEEE
Confidence            23467666655555543     3344466677888888999874 5 34 33333                134566677


Q ss_pred             eC---CHH-HHHHHHhhcCcce-eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHH
Q 027424          143 TG---SLA-LSKHVVETTKYFS-ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE---DVNDLISDL  214 (223)
Q Consensus       143 ~~---~~~-~~~~f~~~l~l~~-~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE---d~~dL~~dl  214 (223)
                      +.   +.. ..+++.++ ++.- .+..++..                       +..++.+|||++..   +.+.+++-|
T Consensus       331 ~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~-----------------------~~~~~~iRis~~~~~~~~i~~~~~~l  386 (397)
T 2zyj_A          331 LPKGLSAEGLFRRALEE-NVAFVPGGPFFAN-----------------------GGGENTLRLSYATLDREGIAEGVRRL  386 (397)
T ss_dssp             CSTTCCHHHHHHHHHHT-TEEEEESGGGCTT-----------------------SCCTTEEEEECSSSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHC-CCEEechHHhcCC-----------------------CCCCCeEEEEcCCCCHHHHHHHHHHH
Confidence            73   222 23333333 4331 11111100                       01357899999974   456667777


Q ss_pred             HHHHh
Q 027424          215 DKALR  219 (223)
Q Consensus       215 ~~Al~  219 (223)
                      +++++
T Consensus       387 ~~~l~  391 (397)
T 2zyj_A          387 GRALK  391 (397)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77765

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=98.84  E-value=2.7e-08  Score=88.66  Aligned_cols=106  Identities=18%  Similarity=0.033  Sum_probs=70.4

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcc--cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl--~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++....       ...+  ..+.|+++.|++|.++..+..+| +++++ +++.+.+.........+
T Consensus       210 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G-~~~~~-~~~~~~l~~~~~~~~~~  287 (429)
T 1yiz_A          210 LCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIG-WAYGP-EALLKNLQMVHQNCVYT  287 (429)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCE-EEESC-HHHHHHHHHHHHTTTCC
T ss_pred             HHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceE-EEEeC-HHHHHHHHHHHhhcccC
Confidence            47899999999999864211       1122  35789999999999987776664 45554 56767666554433344


Q ss_pred             CChHhHHHHHhcHHH-----------HHHHHHHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVKT-----------MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~t-----------l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .++.....+...|+.           +....++..++...+.+.|+++
T Consensus       288 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  335 (429)
T 1yiz_A          288 CATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV  335 (429)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            566655566666665           2233355667777888888876

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=98.84  E-value=3.2e-08  Score=87.05  Aligned_cols=108  Identities=16%  Similarity=0.063  Sum_probs=74.0

Q ss_pred             CccccCCEEEEecCCCCCC----CcCcccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPV----LSRPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~----~~~pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +|+++|+++|+|++++...    ....+.+ +.++++.|++|.++..+..+| +++. ++++.+.+.........+.++.
T Consensus       189 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G-~~~~-~~~~~~~~~~~~~~~~~~~~~~  266 (391)
T 3h14_A          189 AAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVG-WMVV-PEDQVRVVERIAQNMFICAPHA  266 (391)
T ss_dssp             HHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCE-EEEC-CGGGHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeE-EEEe-CHHHHHHHHHHHhhhccCCCHH
Confidence            3789999999999986422    1222333 456999999999975666654 4544 4567777766665555566776


Q ss_pred             hHHHHHh---cHHHHHHHHHHHHhHHHHHHHHHhcCCC
Q 027424           76 DCWICLR---GVKTMALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        76 da~ll~~---~l~tl~~R~~~~~~na~~la~~L~~~p~  110 (223)
                      ..+.+..   ..+.+..+.++..++...+.+.|++++.
T Consensus       267 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  304 (391)
T 3h14_A          267 SQVAALAALDCDAELQANLDVYKANRKLMLERLPKAGF  304 (391)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5544433   3445666778888899999999998754

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=98.83  E-value=8.9e-08  Score=83.69  Aligned_cols=106  Identities=13%  Similarity=0.039  Sum_probs=69.8

Q ss_pred             ccccCCEEEEecCCCCCCC-cCccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHh
Q 027424            2 AHAHGALLLVDNSIMSPVL-SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD   76 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~-~~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~d   76 (223)
                      |+ +|+++|+|++++.... .....    .+.++++.|++|.++..+..+|. +++ ++++.+.+......+  +.++..
T Consensus       175 ~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~-~~~-~~~~~~~l~~~~~~~--~~~~~~  249 (356)
T 1fg7_A          175 TR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGF-TLA-NEEVINLLMKVIAPY--PLSTPV  249 (356)
T ss_dssp             HT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEE-EEE-CHHHHHHHHHHSCSS--CSCHHH
T ss_pred             CC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEE-EEe-CHHHHHHHHHhcCCC--CCCHHH
Confidence            45 8999999999853321 11111    35789999999999766666654 545 456666665443322  456665


Q ss_pred             HHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCee
Q 027424           77 CWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVK  112 (223)
Q Consensus        77 a~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~  112 (223)
                      .+.....++.     +..+.++..++...+.+.|+++|.+.
T Consensus       250 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  290 (356)
T 1fg7_A          250 ADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVE  290 (356)
T ss_dssp             HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence            5555555543     44455777788889999999988653

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=98.83  E-value=7.9e-09  Score=91.00  Aligned_cols=167  Identities=14%  Similarity=0.186  Sum_probs=97.5

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|++++..      +.........|++  |++|.++| +..-+|+++++ +++.+.+.........+.+|
T Consensus       211 l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--~~SK~l~g-G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~  286 (392)
T 3ruy_A          211 VCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMY--ILGKALGG-GVFPISCAAAN-RDILGVFEPGSHGSTFGGNP  286 (392)
T ss_dssp             HHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCCEEEEEC-HHHHTTCCTTSSCCSSTTCH
T ss_pred             HHHHcCCEEEEeechhCCCccccchhhhccCCCCCEE--EEchhhhC-ChhhhEEEEEC-HHHHhhhccCCcCCCCCCCH
Confidence            478999999999998421      1112223356887  45699997 42335666654 45544443222222345677


Q ss_pred             HhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhcC--CCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHH
Q 027424           75 FDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH--PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK  150 (223)
Q Consensus        75 ~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~~--p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~  150 (223)
                      ..+..+...++.+.  ...++..+++..+.+.|++.  |.+..+                  .+.|+++.|.+..  ...
T Consensus       287 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~------------------~~~g~~~~~~~~~--~~~  346 (392)
T 3ruy_A          287 LACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEV------------------RGKGLFIGIELNE--PAR  346 (392)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEE------------------EEETTEEEEEESS--CSH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEE------------------EeeeeEEEEEEcc--hHH
Confidence            77777888887763  33567777888888888875  323211                  1257888888843  223


Q ss_pred             HHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHH
Q 027424          151 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKAL  218 (223)
Q Consensus       151 ~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al  218 (223)
                      +|.+.+.--.+.++          |.                 .++.+|+|.+    .|+.+.+++.|+++|
T Consensus       347 ~l~~~l~~~gi~v~----------~~-----------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          347 PYCEQLKAAGLLCK----------ET-----------------HENVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             HHHHHHHTTTEECC----------CB-----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcEEe----------cC-----------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            33333321111111          11                 1578999944    455667777777765

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=98.83  E-value=3.6e-08  Score=87.08  Aligned_cols=178  Identities=16%  Similarity=0.173  Sum_probs=104.1

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-cC---CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-EL---GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-~~---GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|++++....    ..++ .+   +.++++.|++|.++ .+.. .|+++++ +++.+.+.......+...
T Consensus       203 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r-~G~~~~~-~~~~~~~~~~~~~~~~~~  279 (407)
T 2zc0_A          203 IASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFR-IGWIIAE-GEILKKVLMQKQPIDFCA  279 (407)
T ss_dssp             HHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSC-CEEEECC-HHHHHHHHHHHTTTTSSS
T ss_pred             HHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcc-eEEEecC-HHHHHHHHHHHHhhcCCC
Confidence            47889999999999865322    1112 22   45689999999998 5544 5666554 667777765554444345


Q ss_pred             ChHhHHHHHhcHHHH-------HHHHHHHHhHHHHHHHHHhcC-CCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           73 APFDCWICLRGVKTM-------ALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        73 sp~da~ll~~~l~tl-------~~R~~~~~~na~~la~~L~~~-p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      ++.....+...++..       ..+.++..++...+.+.|+++ |.+ ++..|                ..|.++.|.+.
T Consensus       280 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~----------------~~~~~~~~~~~  342 (407)
T 2zc0_A          280 PAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNA-EFTKP----------------IAGMFVMFFLP  342 (407)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTS-CBCCC----------------SBSSEEEEECS
T ss_pred             CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-EEecC----------------CCcEEEEEEcC
Confidence            676666666656542       223355567778888888874 553 23223                12446667773


Q ss_pred             ---CHH-HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHH
Q 027424          145 ---SLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKA  217 (223)
Q Consensus       145 ---~~~-~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl---Ed~~dL~~dl~~A  217 (223)
                         +.. ..+++.++.++.   +.-|....    +               .+-.++.+|||++.   |+.+.+++.|.++
T Consensus       343 ~~~~~~~l~~~l~~~~gi~---v~~g~~~~----~---------------~~~~~~~iRis~~~~~~~~i~~~~~~l~~~  400 (407)
T 2zc0_A          343 EGADGISFANELMEREGVV---VVPGKPFY----T---------------DESGKNAIRLNFSRPSKEEIPIGIKKLAKL  400 (407)
T ss_dssp             TTCCHHHHHHHHHHHTCEE---CBCSGGGC----S---------------SSCCTTEEEEECSSSCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCeE---EECchhcc----C---------------CCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence               222 223333332332   11121100    0               00135789999996   5678888888888


Q ss_pred             Hhc
Q 027424          218 LRT  220 (223)
Q Consensus       218 l~~  220 (223)
                      ++.
T Consensus       401 l~~  403 (407)
T 2zc0_A          401 YKE  403 (407)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=98.82  E-value=1.5e-07  Score=83.50  Aligned_cols=113  Identities=11%  Similarity=0.008  Sum_probs=76.3

Q ss_pred             CccccCCEEEEecCCCCCCC----cCc-cc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRP-LE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~p-l~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++....    ..+ ..    .+.++++.|++|.++..+..+|. ++. ++++.+.+.........+
T Consensus       202 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~-~~~-~~~~~~~~~~~~~~~~~~  279 (422)
T 3fvs_A          202 LCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGW-VLG-PDHIMKHLRTVHQNSVFH  279 (422)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEE-EEC-CHHHHHHHHHHHHTTTCC
T ss_pred             HHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEE-EEe-CHHHHHHHHHHHhhccCC
Confidence            37889999999999864211    111 11    24559999999999766666654 544 456667666555544445


Q ss_pred             CChHhHHHHHhcHHH-----------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           72 LAPFDCWICLRGVKT-----------MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        72 ~sp~da~ll~~~l~t-----------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      .++...+.+...++.           +..+.++..++...+.+.|+++ .+ ++..|
T Consensus       280 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~  334 (422)
T 3fvs_A          280 CPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GL-KPIIP  334 (422)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TC-EEEBC
T ss_pred             CCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CC-eecCC
Confidence            677777777777764           3455577788889999999988 44 45555

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=98.82  E-value=3.5e-08  Score=86.58  Aligned_cols=105  Identities=15%  Similarity=0.085  Sum_probs=68.0

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH----H----------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----Q----------   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~----~----------   65 (223)
                      +|+++|+++|+|++++.+.. ...-..++|+++.|++|+++|.+ .+ |++++++ ++.++++..    .          
T Consensus       184 l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~-~~-G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  260 (393)
T 1vjo_A          184 LCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSP-GA-SPFTMSS-RAIEKLQRRRTKVANWYLDMNLLG  260 (393)
T ss_dssp             HHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCS-SC-EEEEECH-HHHHHHHTCSSCCSCSTTCHHHHH
T ss_pred             HHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCC-ce-EEEEECH-HHHHHHhccCCCCCceecCcHhhh
Confidence            47889999999999873211 11123578999999999998876 33 6666654 455544211    0          


Q ss_pred             ------HhcCCCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcC
Q 027424           66 ------NAEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        66 ------~~~g~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~  108 (223)
                            ...+.+.++...+.+...++.+     ....++..+++..+.+.|++.
T Consensus       261 ~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  314 (393)
T 1vjo_A          261 KYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI  314 (393)
T ss_dssp             HHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc
Confidence                  0011145666566666677664     334577788888999999876

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.82  E-value=1.1e-08  Score=90.22  Aligned_cols=106  Identities=15%  Similarity=0.168  Sum_probs=69.9

Q ss_pred             CccccCCEEEEecCCCCCCCc----Cccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|++++.....    ....    .+.|+++.|++|+++..+..+ |++++ ++++.+.+...........
T Consensus       202 ~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~l~~-~~~~~~~l~~~~~~~~~~~  279 (389)
T 1o4s_A          202 LAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV-GYLIS-SEKVATAVSKIQSHTTSCI  279 (389)
T ss_dssp             HHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC-EEEEC-CHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccce-EEEEe-CHHHHHHHHHHhhhcccCC
Confidence            378899999999998654321    1122    378999999999997566444 55655 4567676665554433445


Q ss_pred             ChHhHHHHHhcHHH-HHHHHHHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRGVKT-MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~l~t-l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ++...+.+...|+. +....++..++...+.+.|++.
T Consensus       280 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~L~~~  316 (389)
T 1o4s_A          280 NTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM  316 (389)
T ss_dssp             CHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence            66555555444433 3344566777888888889876

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=98.81  E-value=3.4e-08  Score=86.84  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=70.3

Q ss_pred             CccccCCEEEEecCCCCCCC----cCc-ccC--CC-cEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-hcC-C
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRP-LEL--GA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEG-S   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~p-l~~--GA-Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-~~g-~   70 (223)
                      +|+++|+++|+|++++....    ..+ ..+  +. |+ +.|++|.++..+..+ |+++++++++.+.+..... ... .
T Consensus       190 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~  267 (390)
T 1d2f_A          190 LCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTG-AYGIIENSSSRDAYLSALKGRDGLS  267 (390)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCC-EEEEECSHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhh-eEEEECCHHHHHHHHHHHhhhcccC
Confidence            37899999999999865321    111 122  22 78 999999997555444 5565665667676665544 223 2


Q ss_pred             CCChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhc-CCCe
Q 027424           71 GLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRV  111 (223)
Q Consensus        71 ~~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~-~p~v  111 (223)
                      +.++...+.+...++.    +..+.++..++...+.+.|++ .|.+
T Consensus       268 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  313 (390)
T 1d2f_A          268 SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPEL  313 (390)
T ss_dssp             SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            4566665555566653    344456677888888899988 5664

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=98.81  E-value=6.4e-08  Score=86.60  Aligned_cols=114  Identities=11%  Similarity=0.046  Sum_probs=72.3

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCccc---CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|++++...     ......   .+-+|++.|++|+++ .+..+|. ++++ +++.+.+.........+.
T Consensus       219 ~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~-~~~~-~~l~~~l~~~~~~~~~~~  295 (425)
T 2r2n_A          219 LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGF-LTGP-KPLIERVILHIQVSTLHP  295 (425)
T ss_dssp             HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEE-EEEE-HHHHHHHHHHHHTTTCSS
T ss_pred             HHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEE-EecC-HHHHHHHHHHHHHhcCCC
Confidence            3789999999999975211     111112   245699999999997 6666655 5454 467677766555544566


Q ss_pred             ChHhHHHHHhcHHHH---------HHHHHHHHhHHHHHHHHHhc-CCCeeEEEcC
Q 027424           73 APFDCWICLRGVKTM---------ALRVEKQQDNAQKIAEFLAS-HPRVKKVNYA  117 (223)
Q Consensus        73 sp~da~ll~~~l~tl---------~~R~~~~~~na~~la~~L~~-~p~v~~V~yP  117 (223)
                      ++...+.+...|+.+         ....++..++...+.+.|++ .|.+..+..|
T Consensus       296 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p  350 (425)
T 2r2n_A          296 STFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP  350 (425)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC
T ss_pred             CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC
Confidence            777666666666542         12224556677778888887 4665445444

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=98.81  E-value=1.4e-07  Score=83.44  Aligned_cols=174  Identities=13%  Similarity=0.087  Sum_probs=98.2

Q ss_pred             cccCCEEEEecCCCCCCCcCcccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH----------------
Q 027424            3 HAHGALLLVDNSIMSPVLSRPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----------------   65 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~~~~~pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~----------------   65 (223)
                      +.+|++++||++++-..  .|+.. ++|+++.|.+|++++.+ . .|+++.+ +++.++++...                
T Consensus       189 ~~~~~~vivD~a~~~~~--~~~~~~~~di~~~s~sK~~~~~g-g-~g~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~  263 (398)
T 2fyf_A          189 GSDDALVVIDATSGAGG--LPVDIAETDAYYFAPQKNFASDG-G-LWLAIMS-PAALSRIEAIAATGRWVPDFLSLPIAV  263 (398)
T ss_dssp             TCC-CEEEEECTTTTTT--SCCCGGGCSEEEECTTSTTCSCS-S-EEEEEEC-HHHHHHHHHHHHTTCCCCGGGCHHHHH
T ss_pred             hhcCCeEEEEeccccCC--cccCcccCcEEEEecCcccCCCC-c-eEEEEEC-HHHHHHhhcccccCCCCCcEEehHHHh
Confidence            33799999999986443  23322 58999999999999774 2 3556555 45555553211                


Q ss_pred             H-----hcCCCCChHhHHHHHhcHHH------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCC
Q 027424           66 N-----AEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  134 (223)
Q Consensus        66 ~-----~~g~~~sp~da~ll~~~l~t------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g  134 (223)
                      .     ..-.+.+....+.+..+++.      +..+.++..+++..+.+.|++.|.+ ++..|.    |+.        .
T Consensus       264 ~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~----~~~--------~  330 (398)
T 2fyf_A          264 ENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYT-TPFVTD----PGL--------R  330 (398)
T ss_dssp             HHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTE-EESCCS----GGG--------B
T ss_pred             hhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCc-eeccCC----hhh--------c
Confidence            0     01112333334445555554      3445677788889999999988765 333211    110        1


Q ss_pred             CCeeEEEEeCCHHHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCH
Q 027424          135 AGSVLSFLTGSLALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDV  207 (223)
Q Consensus       135 ~ggl~sf~~~~~~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~  207 (223)
                      .+.+++|.+.......+|.+.|   ++.   +.-|             +..          ..++.+|||+|.    ||.
T Consensus       331 ~~~~~~~~~~~~~~~~~l~~~L~~~gI~---v~~g-------------~~~----------~~~~~iRis~~~~~t~e~i  384 (398)
T 2fyf_A          331 SQVVGTIDFVDDVDAGTVAKILRANGIV---DTEP-------------YRK----------LGRNQLRVAMFPAVEPDDV  384 (398)
T ss_dssp             CSSEEEEEECTTSCHHHHHHHHHHTTCB---CCSC-------------CTT----------TCSSEEEEECCTTSCHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHCCcE---EecC-------------ccc----------CCCCEEEEEecCCCCHHHH
Confidence            2348888883111122233322   333   1111             100          125789999994    567


Q ss_pred             HHHHHHHHHHHhc
Q 027424          208 NDLISDLDKALRT  220 (223)
Q Consensus       208 ~dL~~dl~~Al~~  220 (223)
                      +.+++.|++++++
T Consensus       385 ~~~~~~l~~~l~~  397 (398)
T 2fyf_A          385 SALTECVDWVVER  397 (398)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            7777888777754

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=98.80  E-value=6.3e-08  Score=83.06  Aligned_cols=169  Identities=16%  Similarity=0.133  Sum_probs=98.5

Q ss_pred             CccccCCEEEEecCCCCCCCc--Cccc-CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS--RPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC   77 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~--~pl~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da   77 (223)
                      +|+++++ +|+|++++.....  .++. .+.++++.|+||+++..+..+| +++. ++++.+.+......  .+.++...
T Consensus       160 l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G-~~~~-~~~~~~~l~~~~~~--~~~~~~~~  234 (337)
T 3p1t_A          160 LRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLG-ALFG-PSELIAAMKRKQWF--CNVGTLDL  234 (337)
T ss_dssp             HHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCE-EEEC-CHHHHHHHHTTSCT--TCSCHHHH
T ss_pred             HHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheE-EEEe-CHHHHHHHHhhcCC--CCCCHHHH
Confidence            3567776 6779998632211  1222 3568999999999975665554 5544 45666655432221  23444433


Q ss_pred             HHHH---hcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHh
Q 027424           78 WICL---RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  154 (223)
Q Consensus        78 ~ll~---~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~  154 (223)
                      ..+.   +..+.+..++++..++...+.+.|+++ .+ ++ +|                ..|+.+.+...+.+...+.+.
T Consensus       235 ~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~-~~----------------~~~~~~~~~~~~~~~~~~~l~  295 (337)
T 3p1t_A          235 HALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GY-RV-AS----------------SEANFVLVENAAGERTLRFLR  295 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TC-CB-CC----------------CSSSEEEEECTTTHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cC-EE-CC----------------CCCeEEEEEcCCHHHHHHHHH
Confidence            3333   333446677788888889999999987 33 22 22                146777777743334444444


Q ss_pred             hcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHh
Q 027424          155 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  219 (223)
Q Consensus       155 ~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-Ed~~dL~~dl~~Al~  219 (223)
                      .-++.   ++-|..                      .| .++.+|||+|- ||.+.|++.|++.++
T Consensus       296 ~~gi~---v~~g~~----------------------~~-~~~~iRis~~~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          296 ERGIQ---VKDAGQ----------------------FG-LHHHIRISIGREEDNDRLLAALAEYSD  335 (337)
T ss_dssp             HTTEE---CEEGGG----------------------GT-CCSEEEEECCCHHHHHHHHHHHHHHTC
T ss_pred             HCCeE---EEECcc----------------------CC-CCCeEEEecCCHHHHHHHHHHHHHHhh
Confidence            44432   121211                      01 14789999996 467777777776654

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=98.80  E-value=1e-08  Score=91.40  Aligned_cols=191  Identities=19%  Similarity=0.190  Sum_probs=102.6

Q ss_pred             CEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-------HHhcCCCCChHhHH
Q 027424            7 ALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCW   78 (223)
Q Consensus         7 ~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-------~~~~g~~~sp~da~   78 (223)
                      ++++||++++.+.. ....+.++|+++.|++|++ |.  . .|+++++++.....+...       ......+.++...+
T Consensus       216 ~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~-g~--~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (432)
T 3a9z_A          216 VLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFY-GP--R-IGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIA  291 (432)
T ss_dssp             CEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTT-CC--S-CEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHH
T ss_pred             eEEEEEchhhhCCcccChhhcCCCEEEEehhHhc-CC--c-ceEEEEccccccCCcCceeecCCccccccCCCcCHHHHH
Confidence            99999999865432 1212358999999999987 43  3 677777754311111100       11111234555555


Q ss_pred             HHHhcHHHHHHH----HHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC-HHHHHHHH
Q 027424           79 ICLRGVKTMALR----VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVV  153 (223)
Q Consensus        79 ll~~~l~tl~~R----~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~-~~~~~~f~  153 (223)
                      .+..+++.+...    .++..+++..+.+.|++.+.+ +|.+++-..  +       ....+++++|.+.+ ......++
T Consensus       292 a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~  361 (432)
T 3a9z_A          292 GLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGK-RIHLNSRFP--G-------VERLPNTCNFSIQGSQLRGYMVL  361 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GEEESSCCT--T-------CCBCTTEEEEEECSTTCCHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCC-cEEEeCCCC--c-------ccCCCCEEEEEeCCCCCcHHHHH
Confidence            555666654433    345556666666777665443 344333210  0       12356788898843 11234455


Q ss_pred             hhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC----CCeEEEEec----CCCHHHHHHHHHHHHhc
Q 027424          154 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVG----IEDVNDLISDLDKALRT  220 (223)
Q Consensus       154 ~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~----~~liRlsvG----lEd~~dL~~dl~~Al~~  220 (223)
                      +.+.  .+..+.|...+    +.   +...........|+.    ++.||||+|    .||.+.+++.|++++++
T Consensus       362 ~~l~--~i~~~~G~~~~----~~---~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~  427 (432)
T 3a9z_A          362 AQCQ--TLLASVGASCH----SD---HEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ  427 (432)
T ss_dssp             HHCS--SEECBSSCGGG----GG---GTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhc--CeEEecccccc----CC---CCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            5553  23333342211    10   000011222345654    489999999    46788888888888763

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=98.80  E-value=9.5e-09  Score=89.40  Aligned_cols=194  Identities=14%  Similarity=0.073  Sum_probs=105.2

Q ss_pred             CccccC--CEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChh-HHHHHHHH---HHhcCCCCC
Q 027424            1 MAHAHG--ALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFL---QNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g--~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~-~~~~l~~~---~~~~g~~~s   73 (223)
                      +|+++|  +++|+|++++-+.. .+.-++++|+++.|++|.++.++   .|+++++++. +...+...   ......+.+
T Consensus       164 l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (384)
T 1eg5_A          164 IVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKG---VGITYIRKGVPIRPLIHGGGQERGLRSGTQN  240 (384)
T ss_dssp             HHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTT---CEEEEECTTSCCCCSBCSSCTTTTTBCSCCC
T ss_pred             HHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCc---eEEEEEcCCCccccccccCcccccccCCCCC
Confidence            478899  99999999752211 12123579999999999876544   3777776542 11111000   011122455


Q ss_pred             hHhHHHHHhcHHHH----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHH
Q 027424           74 PFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  149 (223)
Q Consensus        74 p~da~ll~~~l~tl----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~  149 (223)
                      +...+.+...++.+    ....++..+++..+.+.|++ +.+ ++..|.-             .+++.++.|.+.+. ..
T Consensus       241 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~-~~~~~~~-------------~~~~~~~~~~~~~~-~~  304 (384)
T 1eg5_A          241 VPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGA-HIITPLE-------------ISLPNTLSVSFPNI-RG  304 (384)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTC-EECSCTT-------------SBCTTEEEEECTTC-CH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCe-EEeCCcc-------------cCCCCEEEEEeCCC-CH
Confidence            65555555666653    34457778888899999987 655 4443310             12566788877321 12


Q ss_pred             HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC----CCeEEEEec----CCCHHHHHHHHHHHHhcC
Q 027424          150 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVG----IEDVNDLISDLDKALRTG  221 (223)
Q Consensus       150 ~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~----~~liRlsvG----lEd~~dL~~dl~~Al~~~  221 (223)
                      ..|.+.|.--.+.+.-|...+.  .+....      ...+..|++    ++.+|||++    .||.+.+++.|+++++..
T Consensus       305 ~~~~~~l~~~gi~v~~g~~~~~--~~~~~~------~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  376 (384)
T 1eg5_A          305 STLQNLLSGYGIYVSTSSACTS--KDERLR------HVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL  376 (384)
T ss_dssp             HHHHHHHHHTTEECBC--------------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhCCeEEeccccccC--CCCcch------HHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            2333333211222222221110  000000      112344554    478999999    456788888888887643

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=98.79  E-value=7.1e-08  Score=84.68  Aligned_cols=106  Identities=7%  Similarity=-0.033  Sum_probs=71.4

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-----cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-----~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++....    ..++     ..+.|+++.|++|+++..+..+ |+++++ +++.+.+.........+
T Consensus       191 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~-~~~~~~l~~~~~~~~~~  268 (386)
T 1u08_A          191 AIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKV-GYCVAP-APISAEIRKVHQYLTFS  268 (386)
T ss_dssp             HHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCC-EEEECC-HHHHHHHHHHHHHHTSS
T ss_pred             HHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccce-EEEEcC-HHHHHHHHHHHHhhccC
Confidence            47899999999999864211    1122     2478999999999998666665 556554 56767666554433334


Q ss_pred             CChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .++.....+...|+.    +....++..++...+.+.|+++
T Consensus       269 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (386)
T 1u08_A          269 VNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES  309 (386)
T ss_dssp             CCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS
T ss_pred             CChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            566555556666664    3334466678888888899876

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=98.79  E-value=5e-08  Score=84.94  Aligned_cols=171  Identities=16%  Similarity=0.113  Sum_probs=100.3

Q ss_pred             cCCEEEEecCCCCCCCcCcccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHHH------------HHHhcCCC
Q 027424            5 HGALLLVDNSIMSPVLSRPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------------LQNAEGSG   71 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~~pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~------------~~~~~g~~   71 (223)
                      +|++++||++++.+.  .|+.+ ..|+++.|+||+++..+   .|+++++++ +.+.+..            .......+
T Consensus       166 ~~~~vivD~a~~~~~--~~~~~~~~d~~~~s~~K~~g~~G---~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~t  239 (362)
T 2c0r_A          166 GSVPLIGDMSSDILS--RPFDLNQFGLVYAGAQKNLGPSG---VTVVIVRED-LVAESPKHLPTMLRYDTYVKNNSLYNT  239 (362)
T ss_dssp             TTSCEEEECTTTTTS--SCCCGGGCSEEEEETTTTTCCSS---CEEEEEEGG-GSSSCCTTSCGGGCHHHHHHTTTCSSC
T ss_pred             CCCEEEEEChhhccC--CccchhHCcEEEEeccccccCcC---cEEEEEcHH-HHhhccccCchHHhHHHHhhccCcCCC
Confidence            689999999986543  23322 24999999999997444   466766653 3222211            01112234


Q ss_pred             CChHhHHHHHhcHHH------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           72 LAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        72 ~sp~da~ll~~~l~t------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      .++...+.+..+++.      +..+.++..+++..+.+.|++.+.+..+.-|     |.+       . .+++++|.+.+
T Consensus       240 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----~~~-------~-~~~~~~~~~~~  306 (362)
T 2c0r_A          240 PPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD-----VDS-------R-SDMNITFRLAS  306 (362)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC-----GGG-------B-CSSEEEEECSC
T ss_pred             chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCC-----hHH-------c-CCcEEEEEcCC
Confidence            555555556666654      3555678888889999999988633122211     111       1 35678888854


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHh
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALR  219 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al~  219 (223)
                      .....+|.+.|.--.+.+. .|.      +                  ..+.||+|+|    .||.+.+++.|++.++
T Consensus       307 ~~~~~~~~~~L~~~gi~~~-~g~------~------------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~~  359 (362)
T 2c0r_A          307 EELEKEFVKASEQEGFVGL-KGH------R------------------SVGGLRASIYNAVPYESCEALVQFMEHFKR  359 (362)
T ss_dssp             HHHHHHHHHHHHHTTEESC-BCC------T------------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHCCCeec-cCC------C------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            4445666665532222111 110      0                  0245999999    5677778888777665

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=98.79  E-value=1.7e-07  Score=84.90  Aligned_cols=175  Identities=11%  Similarity=0.105  Sum_probs=101.0

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-c---CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-E---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|++++....    ..++ .   .+.++++.|++|.++ .+..+| +++++ +++.+.+.........+.
T Consensus       245 la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG-~v~~~-~~l~~~l~~~~~~~~~~~  321 (448)
T 3aow_A          245 LASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIG-WMVGD-PGIIRKMEIAKQSTDLCT  321 (448)
T ss_dssp             HHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCE-EEEEC-HHHHHHHHHHHHHHHSSC
T ss_pred             HHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEE-EEEeC-HHHHHHHHHHHHHhcCCC
Confidence            47899999999999864321    1111 2   256799999999998 665555 45555 567776665443322234


Q ss_pred             ChHhHHHHHhcHHH------HHHHHHHHHhHHHHHHHHHhcC-C-CeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           73 APFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASH-P-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        73 sp~da~ll~~~l~t------l~~R~~~~~~na~~la~~L~~~-p-~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      ++...+.+...|+.      +..+.++..++...+.+.|+++ | .+ ++..|                ..|..+.+++.
T Consensus       322 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~-~~~~p----------------~~g~~~~v~~~  384 (448)
T 3aow_A          322 NVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGV-KWTKP----------------EGGMFIWVTLP  384 (448)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC-EECCC----------------SBSSEEEEECS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe-EEeCC----------------CccEEEEEEcC
Confidence            66666666555553      2233355557788888888874 5 34 33334                12445566663


Q ss_pred             C---H-HHHHHHHhhcCcce-eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHH
Q 027424          145 S---L-ALSKHVVETTKYFS-ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDK  216 (223)
Q Consensus       145 ~---~-~~~~~f~~~l~l~~-~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl---Ed~~dL~~dl~~  216 (223)
                      .   . +..+++.++ ++.- .+..++..                       +-.++.+|||++.   |+.++.++.|.+
T Consensus       385 ~~~~~~~l~~~l~~~-gV~v~pg~~f~~~-----------------------~~~~~~iRls~~~~~~e~i~~~~~~L~~  440 (448)
T 3aow_A          385 DGIDSKKMLERAIKK-GVAYVPGEAFYAH-----------------------RDVKNTMRLNFTYVDEDKIMEGIKRLAE  440 (448)
T ss_dssp             TTCCHHHHHHHHHHT-TEECEEGGGGSTT-----------------------CCCCSEEEEECSSSCTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHC-CcEEEcchhhcCC-----------------------CCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence            2   2 223333333 3321 11111100                       1135789999996   356677777777


Q ss_pred             HHh
Q 027424          217 ALR  219 (223)
Q Consensus       217 Al~  219 (223)
                      +++
T Consensus       441 ~l~  443 (448)
T 3aow_A          441 TIK  443 (448)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=98.79  E-value=2.1e-08  Score=86.03  Aligned_cols=107  Identities=15%  Similarity=0.137  Sum_probs=65.5

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHH----------H---HH-
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY----------F---LQ-   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~----------~---~~-   65 (223)
                      +|+++|+++++|++++-+.. ...-.+|+|+++.|++|++.|...  .|++++++ ++.++++          .   .. 
T Consensus       149 l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~  225 (353)
T 2yrr_A          149 LAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPG--LAPIAASL-EARKAFTGKRGWYLDLARVAEHWE  225 (353)
T ss_dssp             HHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSS--CEEEEECH-HHHHHCCCCSCSTTCHHHHHHHHT
T ss_pred             HHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCc--eEEEEECH-HHHHHhccCCCccccHHHHhhhhh
Confidence            47899999999999853322 111234789999999998765432  36676654 4444432          0   01 


Q ss_pred             -HhcCCCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           66 -NAEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        66 -~~~g~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                       .....+.++.....+..+++.+     ..+.++..+++..+.+.|++. ++
T Consensus       226 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  276 (353)
T 2yrr_A          226 RGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GF  276 (353)
T ss_dssp             TCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence             1112234554444444555543     344577788888889999876 44

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=98.78  E-value=5e-07  Score=79.59  Aligned_cols=113  Identities=14%  Similarity=-0.016  Sum_probs=76.2

Q ss_pred             CccccCCEEEEecCCCCCCC----c-Cccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----S-RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~-~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++....    . ....    .+.++++.|++|+++.++..+| +++. ++++.+.+.........+
T Consensus       195 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G-~~~~-~~~~~~~~~~~~~~~~~~  272 (410)
T 3e2y_A          195 LCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLG-WSIG-PAHLIKHLQTVQQNSFYT  272 (410)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCE-EEEC-CHHHHHHHHHHHHTTTCC
T ss_pred             HHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEE-EEEE-CHHHHHHHHHHHHhhccC
Confidence            47899999999999853211    1 1111    2345999999999986676655 4544 456667666655544555


Q ss_pred             CChHhHHHHHhcHHH-----------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           72 LAPFDCWICLRGVKT-----------MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        72 ~sp~da~ll~~~l~t-----------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      .++...+.+...+++           +..+.++..++...+.+.|+++ .+ ++..|
T Consensus       273 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~  327 (410)
T 3e2y_A          273 CATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GL-KPIVP  327 (410)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TC-EEEBC
T ss_pred             CChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CC-eecCC
Confidence            677777777777763           3455577788889999999988 44 45555

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=98.77  E-value=4.1e-08  Score=89.24  Aligned_cols=103  Identities=15%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCcccCCCcEEEecccccccCCcccceeEEEecChhHH-HHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~-~~l~~~~~~~g~~~sp   74 (223)
                      +||++|++++||++++..+     ...++.+|+|+++.|+||++.|.  ..+|+++++++.+. ..+......... .+|
T Consensus       170 l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~--~g~g~l~~~~~~i~~~~~~~~~~~~~~-~s~  246 (446)
T 2x3l_A          170 SLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPAL--TMGSVLYIHKNAPYRENIIEYLSYFQT-SSP  246 (446)
T ss_dssp             HHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHHHSSSC--TTCEEEEEETTCTTHHHHHHHHHHHSC-SSC
T ss_pred             HHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCccccccc--cccEEEEEcCCcCCHHHHHHHHHHHcC-CCc
Confidence            4789999999999997633     23456679999999999988754  34687877765332 233322222221 233


Q ss_pred             HhHHHHHhcHHH----HHHH-HHHHHhHHHHHHHHHhcC
Q 027424           75 FDCWICLRGVKT----MALR-VEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        75 ~da~ll~~~l~t----l~~R-~~~~~~na~~la~~L~~~  108 (223)
                        .+..+.+++.    +... .++..++..++++++++.
T Consensus       247 --~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~  283 (446)
T 2x3l_A          247 --SYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK  283 (446)
T ss_dssp             --CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc
Confidence              2333333333    2221 122556666777777665

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.76  E-value=5e-08  Score=86.13  Aligned_cols=179  Identities=16%  Similarity=0.159  Sum_probs=104.7

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC-CCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g-~~~sp   74 (223)
                      +|+++|+++|+|+++..+..     ..++. ++|+++.|++|+++|..   +|+++++++++.+.+........ .+.++
T Consensus       187 l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (417)
T 3n0l_A          187 IADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLRGPR---GGIIMTNDEELAKKINSAIFPGIQGGPLM  262 (417)
T ss_dssp             HHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTCSCS---CEEEEESCHHHHHHHHHHHTTTTCSSCCH
T ss_pred             HHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccCCCC---eeEEEECCHHHHHHHhhhhCCcccCCcHH
Confidence            47899999999999643321     33444 68999999999998753   68887776677766654432211 12223


Q ss_pred             HhHHHHHhcH-----HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC----C
Q 027424           75 FDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----S  145 (223)
Q Consensus        75 ~da~ll~~~l-----~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~----~  145 (223)
                      .....+...+     +.+..+.++..+++..+.+.|++ +.+ .+..++               ..+.++.+.+.    +
T Consensus       263 ~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~-~~~~~~---------------~~~~~~~~~~~~~~~~  325 (417)
T 3n0l_A          263 HVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKF-KLVSDG---------------TDNHLVLMSFLDREFS  325 (417)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTC-EEGGGS---------------CSSSEEEEECTTSSSC
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCc-eeccCC---------------CCceEEEEEcccCCCC
Confidence            2222222222     23456678888899999999988 443 222111               13445556552    3


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec--------CCCHHHHHHHHHHH
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLDKA  217 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG--------lEd~~dL~~dl~~A  217 (223)
                      .+.+.+++..-++.-..   +..      |....           ....+.-+|++..        -|+.+.+++.|+++
T Consensus       326 ~~~~~~~l~~~gi~v~~---~~~------~~~~~-----------~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~  385 (417)
T 3n0l_A          326 GKDADLALGNAGITANK---NTV------PGEIR-----------SPFITSGLRLGTPALTARGFKEKEMEIVSNYIADI  385 (417)
T ss_dssp             HHHHHHHHHHTTEECEE---CCC------TTCCS-----------CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCeEEec---ccc------CCCCc-----------ccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHH
Confidence            45556666655544211   111      11000           0012355898865        37788899999988


Q ss_pred             Hhc
Q 027424          218 LRT  220 (223)
Q Consensus       218 l~~  220 (223)
                      |+.
T Consensus       386 l~~  388 (417)
T 3n0l_A          386 LDD  388 (417)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            864

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=98.75  E-value=5.3e-08  Score=86.88  Aligned_cols=105  Identities=8%  Similarity=-0.019  Sum_probs=66.2

Q ss_pred             CccccCCEEEEecCCCCCCC----c-C--cccCC-------Cc--EEEecccccccCCcccceeEEEecChhHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL----S-R--PLELG-------AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~-~--pl~~G-------AD--ivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~   64 (223)
                      +|+++|++||+|++++...+    + .  .+..+       +|  +++.|+||.++..+..+|. +++.++++.+.+...
T Consensus       216 ~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~-~~~~~~~~~~~~~~~  294 (428)
T 1iay_A          216 FTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGI-IYSFNDDVVNCARKM  294 (428)
T ss_dssp             HHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEE-EEESCHHHHHHHHHH
T ss_pred             HHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEE-EEeCCHHHHHHHHHH
Confidence            37899999999999864221    1 1  12112       78  8999999999766766654 556556676666544


Q ss_pred             HHhcCCCCChHhHHHHHhcHHH-------HHHHHHHHHhHHHHHHHHHhcC
Q 027424           65 QNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        65 ~~~~g~~~sp~da~ll~~~l~t-------l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ....  ..++.....+...++.       +....++..++...+.+.|++.
T Consensus       295 ~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (428)
T 1iay_A          295 SSFG--LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             HTTS--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Hhcc--cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3322  3455544444444433       2233456677888888889887

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=98.75  E-value=1.5e-07  Score=82.97  Aligned_cols=132  Identities=16%  Similarity=0.130  Sum_probs=80.9

Q ss_pred             CccccCCEEEEecCCCCCCC-cC---cc---c--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH--hcC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SR---PL---E--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~---pl---~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~--~~g   69 (223)
                      +|+++|+++|+|++++.+.+ ..   .+   .  ...|+++.|++|.++++    ||+++.+ +++.+.+.....  ...
T Consensus       203 l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~----GG~~~~~-~~~~~~l~~~~~~~~~~  277 (401)
T 2bwn_A          203 IAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF----GGYIAAS-ARMVDAVRSYAPGFIFS  277 (401)
T ss_dssp             HHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC----CEEEEEC-HHHHHHHHHHCHHHHTS
T ss_pred             HHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCC----CCEEecC-HHHHHHHHHhCcCceec
Confidence            47899999999999874322 11   11   1  13689999999999965    3777664 566555543211  223


Q ss_pred             CCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           70 SGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      ..++|.....+..+++.+     ..+.++..+++..+.+.|++. .+ ++..|                 .|++++|.+.
T Consensus       278 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~-----------------~~~~~~~~~~  338 (401)
T 2bwn_A          278 TSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GM-PIIDH-----------------GSHIVPVVIG  338 (401)
T ss_dssp             BCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TC-CBCCC-----------------SSSCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CC-cccCC-----------------CCCeEEEEeC
Confidence            334565555556666654     344577778888888888875 33 22111                 2468899886


Q ss_pred             CHHHHHHHHhhc
Q 027424          145 SLALSKHVVETT  156 (223)
Q Consensus       145 ~~~~~~~f~~~l  156 (223)
                      +.....+|.+.|
T Consensus       339 ~~~~~~~~~~~L  350 (401)
T 2bwn_A          339 DPVHTKAVSDML  350 (401)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHH
Confidence            433344554444

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=98.75  E-value=3.1e-08  Score=91.13  Aligned_cols=170  Identities=14%  Similarity=0.155  Sum_probs=101.3

Q ss_pred             CccccCCEEEEecCCCCCC------------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-H-
Q 027424            1 MAHAHGALLLVDNSIMSPV------------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-N-   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~------------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~-   66 (223)
                      +|+++|++|+||++++...            .++....|+|+++.|.+|++.|..  -.|+++++++.+........ . 
T Consensus       264 la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~  341 (514)
T 3mad_A          264 LAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAK--GTSVILYRRPDLLHYQYFIAADW  341 (514)
T ss_dssp             HHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCS--SCEEEEESSHHHHTTTCEEESSC
T ss_pred             HHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCC--CeEEEEEeCHHHhcccccccccc
Confidence            4789999999999987532            123345689999999999966542  24666677654322110000 0 


Q ss_pred             ---------hcCCCCCh---HhHHHHHhcHH--HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           67 ---------AEGSGLAP---FDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        67 ---------~~g~~~sp---~da~ll~~~l~--tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                               ..| +.+.   ..++..++.+.  .+..++++..+++..+.+.|++.|.+. +..|               
T Consensus       342 ~~~~~~~~~~~g-s~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~---------------  404 (514)
T 3mad_A          342 PGGLYFSPTFAG-SRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLK-ILGD---------------  404 (514)
T ss_dssp             TTCSEEESSSCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCE-ESSC---------------
T ss_pred             CCCcccCCccCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeE-EeCC---------------
Confidence                     011 1111   23444444333  356678899999999999999988763 3333               


Q ss_pred             CCCCeeEEEEeC--CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec-----CC
Q 027424          133 KGAGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IE  205 (223)
Q Consensus       133 ~g~ggl~sf~~~--~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-----lE  205 (223)
                        ..+++.|...  +.....+.+..-++.-     .+.           +             .++.+|++++     -|
T Consensus       405 --~~~~~~~~~~~~~~~~l~~~L~~~Gi~v-----~g~-----------~-------------~~~~~Ri~~~~~~~~~e  453 (514)
T 3mad_A          405 --PLWVIAVASDELNIYQVMEEMAGRGWRL-----NGL-----------H-------------RPPAFHVALTLRHTEPG  453 (514)
T ss_dssp             --CSSEEEEECSSSCHHHHHHHHHTTTCBC-----EEE-----------T-------------TTTEEEEECCGGGGSTT
T ss_pred             --CeEEEEEeCCCCCHHHHHHHHHhcCCEe-----ccC-----------C-------------CCCeEEEEEecCCCCHH
Confidence              1347888763  2222222222223221     000           0             1356999998     47


Q ss_pred             CHHHHHHHHHHHHhc
Q 027424          206 DVNDLISDLDKALRT  220 (223)
Q Consensus       206 d~~dL~~dl~~Al~~  220 (223)
                      +.+++++.|+++++.
T Consensus       454 ~i~~~l~~L~~~l~~  468 (514)
T 3mad_A          454 VVDRFLADLQDAVAQ  468 (514)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899999999998863

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=98.75  E-value=5.5e-08  Score=85.80  Aligned_cols=179  Identities=19%  Similarity=0.205  Sum_probs=101.2

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCCCcEEEecccccccCCcccceeEEEecC--hhHHHHHHHHHHh--cCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--ERLAKELYFLQNA--EGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~--~~~~~~l~~~~~~--~g~~   71 (223)
                      +|+++|+++|+|++++.++.     ..++. .+|+++.|++|+++|..   ||+++.++  +.+.+.+......  .+..
T Consensus       192 l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~g~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (420)
T 3gbx_A          192 IADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTLAGPR---GGLILAKGGDEELYKKLNSAVFPSAQGGP  267 (420)
T ss_dssp             HHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGGCSCS---CEEEEESSCCHHHHHHHHHHHC----CCC
T ss_pred             HHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccCCCCCC---ceEEEEcCCcHHHHHHhhhhcCCCCCCCc
Confidence            47899999999999754322     34444 48999999999998653   68887765  3565555433211  1211


Q ss_pred             CChHhHHH--HH-hcH-HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC---
Q 027424           72 LAPFDCWI--CL-RGV-KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---  144 (223)
Q Consensus        72 ~sp~da~l--l~-~~l-~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~---  144 (223)
                      ..+.-+.+  .+ ..+ +.+..+.++..+++..+.+.|++. .+ ++..|               ...+.++.+.+.   
T Consensus       268 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~---------------~~~~~~~~~~~~~~~  330 (420)
T 3gbx_A          268 LMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GY-KVVSG---------------GTENHLFLLDLVDKN  330 (420)
T ss_dssp             CHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TC-EEGGG---------------SCSSSEEEEECGGGT
T ss_pred             chhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CC-eeccC---------------CCCCeEEEEEcCCCC
Confidence            11211111  11 111 334566788888999999999873 33 22221               113556666652   


Q ss_pred             -CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC--------CCHHHHHHHHH
Q 027424          145 -SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------EDVNDLISDLD  215 (223)
Q Consensus       145 -~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl--------Ed~~dL~~dl~  215 (223)
                       +.+...++++.-++.-...+.         |.....           ...+.-+||++..        |+.+.+++-|+
T Consensus       331 ~~~~~~~~~l~~~gi~v~~~~~---------~~~~~~-----------~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~  390 (420)
T 3gbx_A          331 LTGKEADAALGRANITVNKNSV---------PNDPKS-----------PFVTSGIRIGSPAVTRRGFKEAEVKELAGWMC  390 (420)
T ss_dssp             CCHHHHHHHHHHTTEECEEECC---------TTCSSC-----------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCcEeccccC---------CCCccc-----------cCCCcceEEecchhcccCCCHHHHHHHHHHHH
Confidence             344455555554543211110         110000           0122349999863        67888888888


Q ss_pred             HHHhc
Q 027424          216 KALRT  220 (223)
Q Consensus       216 ~Al~~  220 (223)
                      ++|+.
T Consensus       391 ~~l~~  395 (420)
T 3gbx_A          391 DVLDN  395 (420)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            88865

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=98.75  E-value=6e-08  Score=88.89  Aligned_cols=178  Identities=13%  Similarity=0.185  Sum_probs=100.8

Q ss_pred             CccccCCEEEEecCCCCCCCcCc----cc-C-CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP----LE-L-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE------   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p----l~-~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~------   68 (223)
                      +|+++|++++||++++.+....+    +. . ++|+++.|.||+++++. . .|+++++++...+.+.....++      
T Consensus       283 l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~-~-~G~l~~~~~~~~~~~~~~~~yl~~~~~~  360 (497)
T 2qma_A          283 MAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTI-S-CGALLVNDKSNFKFLLHHADYLNREHDE  360 (497)
T ss_dssp             HHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCS-S-CEEEEESCGGGGGGGCC-----------
T ss_pred             HHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCc-c-eEEEEEeCHHHHHHhcCCchhcCCcccc
Confidence            47899999999999876544222    11 2 78999999999998763 2 4556666654322221100000      


Q ss_pred             -----CCCC------ChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCC
Q 027424           69 -----GSGL------APFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  135 (223)
Q Consensus        69 -----g~~~------sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~  135 (223)
                           +.++      .....|..++  +.+.+..++++..+++..+++.|++.|.+ ++..|     |           .
T Consensus       361 ~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~-----~-----------~  423 (497)
T 2qma_A          361 LPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQF-ELLAE-----P-----------S  423 (497)
T ss_dssp             ---------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTE-EECSC-----C-----------S
T ss_pred             CCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCe-EEEcC-----C-----------C
Confidence                 0000      0111232333  33456677888999999999999998876 44333     1           2


Q ss_pred             CeeEEEEeCCH-----HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec-----CC
Q 027424          136 GSVLSFLTGSL-----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IE  205 (223)
Q Consensus       136 ggl~sf~~~~~-----~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-----lE  205 (223)
                      +++++|.+.+.     +...++.+.+.  ..|.-       + .+.+.            .+ ..+.+|+|++     .|
T Consensus       424 ~~~v~f~~~~~~~~~~~l~~~l~~~l~--~~G~~-------~-~~~~~------------~~-g~~~lRis~~~~~~t~e  480 (497)
T 2qma_A          424 LSTVLFRATHETADLDELNKALRLEAL--TRGIA-------V-LGETI------------VD-GKTALKFTILNPCLTTS  480 (497)
T ss_dssp             SSEEEEEECCSSSCHHHHHHHHHHHHH--HHTSC-------B-CEEEE------------ET-TEEEEEEECCCTTCCHH
T ss_pred             ceEEEEEEcCCccCHHHHHHHHHHHHH--hCCCE-------E-EEeeE------------EC-CEEEEEEEecCCCCCHH
Confidence            56999987321     11223333321  11110       0 11100            00 2357999994     55


Q ss_pred             CHHHHHHHHHHHHhc
Q 027424          206 DVNDLISDLDKALRT  220 (223)
Q Consensus       206 d~~dL~~dl~~Al~~  220 (223)
                      |.+.+++.|+++++.
T Consensus       481 di~~~~~~l~~~~~~  495 (497)
T 2qma_A          481 DFESLLSKINMLAVE  495 (497)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            677788888877654

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=98.74  E-value=5.6e-08  Score=85.13  Aligned_cols=178  Identities=15%  Similarity=0.078  Sum_probs=98.1

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--------------   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--------------   65 (223)
                      +|+++|+++|+|++++.+.. ...-.+|+|+++.|++|++.|..-.  |+++++ +++.++++...              
T Consensus       159 l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~--G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~  235 (392)
T 2z9v_A          159 LVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGL--TMMGVS-ERAWAKMKANPLAPRASMLSIVDWE  235 (392)
T ss_dssp             HHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCC--EEEEEC-HHHHHHHHTCTTSCCSSTTCSGGGT
T ss_pred             HHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCce--eEEEEC-HHHHHHhhhccCCCCceeccHHHHH
Confidence            47899999999999864322 1222358999999999987764322  667665 45555553210              


Q ss_pred             ------HhcCCCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCC
Q 027424           66 ------NAEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  134 (223)
Q Consensus        66 ------~~~g~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g  134 (223)
                            .....+.++.....+...++.+     ....++..+++..+.+.|++. .+ ++..|.    +.        ..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~----~~--------~~  301 (392)
T 2z9v_A          236 NAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GL-SVWAAS----DS--------IA  301 (392)
T ss_dssp             TTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CBSSSS----GG--------GB
T ss_pred             hhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CC-eeccCC----cc--------cc
Confidence                  0111123333333334455443     334567777888888888876 43 232221    00        12


Q ss_pred             CCeeEEEEeC---CHHH-HHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE-ec----CC
Q 027424          135 AGSVLSFLTG---SLAL-SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS-VG----IE  205 (223)
Q Consensus       135 ~ggl~sf~~~---~~~~-~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls-vG----lE  205 (223)
                      .++++.|.+.   +.+. .+++.++-++.   +.-|..      +                 ..++.+||| .|    -|
T Consensus       302 ~~~~~~~~~~~~~~~~~l~~~L~~~~gi~---v~~g~~------~-----------------~~~~~lRi~~~~~~~~~~  355 (392)
T 2z9v_A          302 SPTTTAVRTPDGVDEKALRQAARARYGVV---FSSGRG------E-----------------TLGKLTRIGHMGPTAQPI  355 (392)
T ss_dssp             CTTEEEEECCTTCCHHHHHHHHHHHHCEE---CEECCG------G-----------------GTTTEEEEECCGGGCSHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhcCCEE---EecCCC------C-----------------CCCCeEEEeCcccccCHH
Confidence            4678888873   2222 22222222332   121210      0                 135789999 47    44


Q ss_pred             CHHHHHHHHHHHHhcC
Q 027424          206 DVNDLISDLDKALRTG  221 (223)
Q Consensus       206 d~~dL~~dl~~Al~~~  221 (223)
                      |.+.+++.|+++++..
T Consensus       356 ~i~~~~~~l~~~~~~~  371 (392)
T 2z9v_A          356 YAIAALTALGGAMNAA  371 (392)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            5677778888877643

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=98.74  E-value=7.1e-07  Score=79.29  Aligned_cols=83  Identities=13%  Similarity=0.040  Sum_probs=54.9

Q ss_pred             Cc-cccCCEEEEecCCCCCCCc--------Ccc-------cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH
Q 027424            1 MA-HAHGALLLVDNSIMSPVLS--------RPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL   64 (223)
Q Consensus         1 ia-~~~g~~lvVDnT~~s~~~~--------~pl-------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~   64 (223)
                      +| +++|+++|+|++++...+.        +.+       ..+.+|++.|++|+ .+.+..+| +++. ++++.+.+...
T Consensus       201 ~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G-~~~~-~~~~~~~~~~~  277 (423)
T 3ez1_A          201 LQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGLG-FVAS-SEDNIRWLSKY  277 (423)
T ss_dssp             CCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSCE-EEEE-CHHHHHHHHHH
T ss_pred             HHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhh-ccCCcceE-EEEe-CHHHHHHHHHH
Confidence            46 8999999999998632111        111       23567999999997 34455554 5655 45677777766


Q ss_pred             HHhcCCCCChHhHHHHHhcHHH
Q 027424           65 QNAEGSGLAPFDCWICLRGVKT   86 (223)
Q Consensus        65 ~~~~g~~~sp~da~ll~~~l~t   86 (223)
                      ....+...++...+.+...++.
T Consensus       278 ~~~~~~~~~~~~~~a~~~~l~~  299 (423)
T 3ez1_A          278 LGAQSIGPNKVEQARHVKFLTE  299 (423)
T ss_dssp             HHHSCSCCCHHHHHHHHHHHHH
T ss_pred             HhhhccCCCHHHHHHHHHHHHh
Confidence            6666656777766666666665

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=98.73  E-value=4.4e-08  Score=89.97  Aligned_cols=113  Identities=12%  Similarity=0.146  Sum_probs=73.6

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Cccc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHH-HHHHhc-CCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FLQNAE-GSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~-~~~~~~-g~~   71 (223)
                      +|+++|++++||.+++.+...     ..+.  .++|+++-|.||+++++.  -+|+++++++++.+... ....+. +..
T Consensus       270 la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~--~~g~l~~~~~~~~~~~~~~~~~~l~~~~  347 (504)
T 2okj_A          270 ICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL--QCSAILVKEKGILQGCNQMCAGYLFQPD  347 (504)
T ss_dssp             HHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESSTTHHHHHHCCCCSSSCCSC
T ss_pred             HHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCc--ceEEEEEECHHHHHHHhcCCCccccCCc
Confidence            478999999999998765432     2233  279999999999998763  25677777654433211 111111 100


Q ss_pred             -------------------CChHhHHHHHhcH--HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEc
Q 027424           72 -------------------LAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNY  116 (223)
Q Consensus        72 -------------------~sp~da~ll~~~l--~tl~~R~~~~~~na~~la~~L~~~p~v~~V~y  116 (223)
                                         ......|.+++.+  +.+..++++..+++..+++.|++.|.+ ++..
T Consensus       348 ~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~  412 (504)
T 2okj_A          348 KQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF-EMVF  412 (504)
T ss_dssp             CSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTE-EESS
T ss_pred             ccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEe
Confidence                               1234455555544  345667888999999999999998886 4444

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.73  E-value=4.7e-09  Score=96.49  Aligned_cols=104  Identities=14%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             CccccCCEEEEecCCCCCCC------cCcccCC-CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC-CC
Q 027424            1 MAHAHGALLLVDNSIMSPVL------SRPLELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------~~pl~~G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~-~~   72 (223)
                      +||++|+|++|||+||.++.      ...+++| ||++|+|+||.+--|  +-||.+..+++++.+++  ...+.|. +.
T Consensus       241 Ich~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvp--IGG~ii~~~d~e~l~~~--~~~yPGr~S~  316 (501)
T 3hl2_A          241 ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP--VGGAIIAGFNDSFIQEI--SKMYPGRASA  316 (501)
T ss_dssp             HHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCC--SSCEEEEESCHHHHHHH--HHTSCSCBCS
T ss_pred             HHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceee--cCceEEEeCCHHHHHHH--HHhCCCCCCC
Confidence            58999999999999999863      2356679 999999999998755  33445546776665554  2233342 24


Q ss_pred             Ch-HhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           73 AP-FDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp-~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      +| .+.|+.+.  |.+-+...+++..+++..+.+.|++.
T Consensus       317 Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l  355 (501)
T 3hl2_A          317 SPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL  355 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 34444333  44456677789999999999988863

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=98.72  E-value=4e-07  Score=79.70  Aligned_cols=106  Identities=14%  Similarity=0.010  Sum_probs=70.6

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc--cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl--~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|++++....    ....  ..+.|+++.|++|.++..+..+ |+++++ +++.+.+.........+.++
T Consensus       180 ~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~-~~~~~~~~~~~~~~~~~~~~  257 (381)
T 1v2d_A          180 LARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRV-GWIVGP-KEFMPRLAGMRQWTSFSAPT  257 (381)
T ss_dssp             HHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCC-EEEECC-TTTHHHHHHHHHHHTSSCCH
T ss_pred             HHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccce-EEEEeC-HHHHHHHHHHHhhcccCCCc
Confidence            37899999999999864321    1122  3489999999999997566444 556555 45666666554443445566


Q ss_pred             HhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcC
Q 027424           75 FDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        75 ~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~  108 (223)
                      ...+.+...|+..      ..+.++..+++..+.+.|++.
T Consensus       258 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (381)
T 1v2d_A          258 PLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM  297 (381)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            6556666666643      334566777888888888874

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=98.71  E-value=9.6e-08  Score=83.64  Aligned_cols=176  Identities=14%  Similarity=0.152  Sum_probs=97.5

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH----H---------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----N---------   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~----~---------   66 (223)
                      +|+++|+++|+|++++.+.. ...-++++|+++.|++|++.|....  |+++++ +++.+.+....    .         
T Consensus       169 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~--G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  245 (393)
T 2huf_A          169 LCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGI--TPVSFS-HRAVERYKRRNTKVKVYYWDMSLVG  245 (393)
T ss_dssp             HHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSC--EEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHH
T ss_pred             HHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCe--EEEEEC-HHHHHHHhhcCCCCceEEEchHHHH
Confidence            47899999999999753321 1222357999999999987754322  666665 55655554220    0         


Q ss_pred             -hcC---------CCCChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhh
Q 027424           67 -AEG---------SGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  131 (223)
Q Consensus        67 -~~g---------~~~sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~  131 (223)
                       ..+         .+.+......+...++.     +..+.++..+++..+.+.|++. ++ ++..|     +.       
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~-----~~-------  311 (393)
T 2huf_A          246 DYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GF-ELYAD-----PK-------  311 (393)
T ss_dssp             HHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CBSSC-----GG-------
T ss_pred             hhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CC-eeccC-----cc-------
Confidence             011         12233222223334443     3345577788889999999876 43 22222     00       


Q ss_pred             hCCCCeeEEEEeC---CHHH-HHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe-cC--
Q 027424          132 AKGAGSVLSFLTG---SLAL-SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-GI--  204 (223)
Q Consensus       132 ~~g~ggl~sf~~~---~~~~-~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv-Gl--  204 (223)
                       ...++++.|.+.   +.+. .+++.+.-++.   +.-|..      +                 ..++.+|||+ |.  
T Consensus       312 -~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~---v~~g~~------~-----------------~~~~~~Ri~~~~~~~  364 (393)
T 2huf_A          312 -DRLSTVTTIKVPQGVDWLKAAQYAMKTYLVE---ISGGLG------P-----------------TAGQVFRIGLMGQNA  364 (393)
T ss_dssp             -GBCTTEEEEECCTTCCHHHHHHHHHHHHCEE---CBCCCG------G-----------------GTTTEEEEECCGGGC
T ss_pred             -ccCCcEEEEEcCCCCCHHHHHHHHHHhCCEE---EecCcc------c-----------------ccCCEEEEEcccCcC
Confidence             013458888873   2222 22222332332   222211      0                 1357899999 83  


Q ss_pred             --CCHHHHHHHHHHHHhc
Q 027424          205 --EDVNDLISDLDKALRT  220 (223)
Q Consensus       205 --Ed~~dL~~dl~~Al~~  220 (223)
                        |+.+.+++.|+++++.
T Consensus       365 ~~e~i~~~~~~l~~~~~~  382 (393)
T 2huf_A          365 TTERVDRVLQVFQEAVAA  382 (393)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence              2467778888877763

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=98.70  E-value=1.6e-07  Score=84.08  Aligned_cols=105  Identities=10%  Similarity=0.047  Sum_probs=63.3

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCCC-------------cEEEecccccccCCcccceeEEEecChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELGA-------------DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~GA-------------Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~   62 (223)
                      +|+++|+++|+|++++...+     .....++.             .+++.|++|.++..+..+ |+++++++.+.+.+.
T Consensus       219 ~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~  297 (435)
T 3piu_A          219 FVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRV-GAIYSNDDMVVAAAT  297 (435)
T ss_dssp             HHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCE-EEEEESCHHHHHHHH
T ss_pred             HHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeE-EEEEeCCHHHHHHHH
Confidence            37899999999999754211     11111122             289999999997555555 456666666666555


Q ss_pred             HHHHhcCCCCChHhHHHHHhcHHH-------HHHHHHHHHhHHHHHHHHHhcC
Q 027424           63 FLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        63 ~~~~~~g~~~sp~da~ll~~~l~t-------l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ......  ..++.....+...++.       +..+.++..++...+.+.|+++
T Consensus       298 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (435)
T 3piu_A          298 KMSSFG--LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS  348 (435)
T ss_dssp             HHGGGS--CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhcC--CCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            443332  2345444443333332       2333466677888888899876

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=98.70  E-value=3.7e-07  Score=81.46  Aligned_cols=182  Identities=13%  Similarity=0.083  Sum_probs=97.7

Q ss_pred             Cc-cccCCEEEEecCCCCCCC-c------Ccc-------cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH
Q 027424            1 MA-HAHGALLLVDNSIMSPVL-S------RPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ   65 (223)
Q Consensus         1 ia-~~~g~~lvVDnT~~s~~~-~------~pl-------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~   65 (223)
                      +| +++|+++|+|++++...+ .      +.+       ..+.+|++.|++|+ .+.+..+| +++. ++++.+.+....
T Consensus       209 ~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~G-~~~~-~~~l~~~~~~~~  285 (427)
T 3ppl_A          209 METAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGVS-FFLT-SAENRKWYTGHA  285 (427)
T ss_dssp             CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSCE-EEEC-CHHHHHHHHHHH
T ss_pred             HHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccEE-EEEc-CHHHHHHHHHHh
Confidence            46 899999999999864211 1      111       23567999999999 55566655 5544 466777776666


Q ss_pred             HhcCCCCChHhHHHHHhcHHH---HH---HHH-HHHHhHHHHHHHHHhcC-CC--eeEEEcCCCCCCcchHHHHhhhCCC
Q 027424           66 NAEGSGLAPFDCWICLRGVKT---MA---LRV-EKQQDNAQKIAEFLASH-PR--VKKVNYAGLPEHPGHELHYSQAKGA  135 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l~t---l~---~R~-~~~~~na~~la~~L~~~-p~--v~~V~yP~l~~~~~~~~~~~~~~g~  135 (223)
                      ...+...++.....+...++.   +.   .++ +...++...+.+.|+++ |.  ..++..|                ..
T Consensus       286 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p----------------~~  349 (427)
T 3ppl_A          286 GIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVP----------------AG  349 (427)
T ss_dssp             HHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCC----------------SB
T ss_pred             hcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCC----------------Cc
Confidence            555555676655555544443   21   122 33344555566666542 22  1234444                13


Q ss_pred             CeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCC---CHHHHHH
Q 027424          136 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE---DVNDLIS  212 (223)
Q Consensus       136 ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE---d~~dL~~  212 (223)
                      |..+.+++.+. ....|.+.+.--.+.+.-|+..    .+.             ..+-.++.+|||++..   +.++.++
T Consensus       350 g~~~~~~~~~~-~~~~~~~~l~~~gv~v~~~g~~----~~~-------------~~~~~~~~~Ris~~~~~~~~i~~~~~  411 (427)
T 3ppl_A          350 GYFISLDVVPG-TASRVAELAKEAGIALTGAGSS----YPL-------------RQDPENKNLRLAPSLPPVEELEVAMD  411 (427)
T ss_dssp             SSCEEEECSTT-CHHHHHHHHHHTTEECCCTTTT----SGG-------------GCCTTSCEEEECCSSSCHHHHHHHHH
T ss_pred             cEEEEEECCcc-hHHHHHHHHHHCCCEEecCcCc----CCC-------------CCCCCCCeEEEECCCCCHHHHHHHHH
Confidence            55566777421 1233333332112222222210    000             0011467899999984   4555566


Q ss_pred             HHHHHHh
Q 027424          213 DLDKALR  219 (223)
Q Consensus       213 dl~~Al~  219 (223)
                      .|.++++
T Consensus       412 ~l~~~l~  418 (427)
T 3ppl_A          412 GVATCVL  418 (427)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666665

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=98.70  E-value=3.8e-07  Score=80.53  Aligned_cols=178  Identities=16%  Similarity=0.179  Sum_probs=100.6

Q ss_pred             CccccCCEEEEecCCCC-----CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh--cCCCCC
Q 027424            1 MAHAHGALLLVDNSIMS-----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-----~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~--~g~~~s   73 (223)
                      +|+++|+++|+|+++..     +....++.. +|+++.|++|+++|.   .+|+++.+++.+.+.+......  .+....
T Consensus       195 l~~~~~~~li~De~~~~g~~~~~~~~~~~~~-~di~~~s~sK~l~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (425)
T 3ecd_A          195 IADSVGAKLMVDMAHIAGVIAAGRHANPVEH-AHVVTSTTHKTLRGP---RGGFVLTNDEEIAKKINSAVFPGLQGGPLM  270 (425)
T ss_dssp             HHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSGGGCCC---SCEEEEESCHHHHHHHHHHHC-----CCCH
T ss_pred             HHHHcCCEEEEECcChHhhhhcccccCchhc-CcEEEecCCcccCCC---CcEEEEeCCHHHHHHHHhhhCccccCCccH
Confidence            47899999999999432     223445553 899999999999875   3688877766666655443221  111122


Q ss_pred             hHhHHHHHhcH-----HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC----
Q 027424           74 PFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----  144 (223)
Q Consensus        74 p~da~ll~~~l-----~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~----  144 (223)
                      +.-+. +..++     +.+..+.++..+++..+.+.|++.. + .+..|+               +.+.++.+.+.    
T Consensus       271 ~~~~a-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~---------------~~~~~~~~~~~~~~~  332 (425)
T 3ecd_A          271 HVIAG-KAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG-V-DLVTGG---------------TDNHLLLVDLRPKGL  332 (425)
T ss_dssp             HHHHH-HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-C-EEGGGS---------------CSSSEEEEECGGGTC
T ss_pred             HHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC-C-eeccCC---------------CCceEEEEEeCCCCC
Confidence            22121 12222     2344566778888888999998743 3 333221               24567777762    


Q ss_pred             CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec--------CCCHHHHHHHHHH
Q 027424          145 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLDK  216 (223)
Q Consensus       145 ~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG--------lEd~~dL~~dl~~  216 (223)
                      +.+...+.+..-++.-..   ++      .|....           ....++.+|++.+        -|+.+.+++-|++
T Consensus       333 ~~~~~~~~l~~~gi~v~~---~~------~p~~~~-----------~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~  392 (425)
T 3ecd_A          333 KGAQVEQALERAGITCNK---NG------IPFDPE-----------KPTITSGIRLGTPAGTTRGFGAAEFREVGRLILE  392 (425)
T ss_dssp             CHHHHHHHHHHTTEECEE---CC------CTTCSS-----------CTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCEecc---cc------cCCCCC-----------CCCCccceeccchhheeccCCHHHHHHHHHHHHH
Confidence            334455555554443211   11      111000           0012456899833        4677888888888


Q ss_pred             HHhc
Q 027424          217 ALRT  220 (223)
Q Consensus       217 Al~~  220 (223)
                      +++.
T Consensus       393 ~l~~  396 (425)
T 3ecd_A          393 VFEA  396 (425)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7764

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=98.70  E-value=1.4e-06  Score=76.82  Aligned_cols=181  Identities=17%  Similarity=0.184  Sum_probs=102.5

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH------------HH---
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------------LQ---   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~------------~~---   65 (223)
                      +||++|+++++|++.+....+.+.++|+|+++.|.+|+++|+..  .|++++++ ++.+.+..            +.   
T Consensus       163 ~~~~~~~~li~D~~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~g--~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~  239 (379)
T 3ke3_A          163 AVHSVGGLLVIDCIASGCVWLDMKELGIDVLISAPQKGWSSTPC--AGLVMLSA-AAIKKVESTESNCFSLDLKQWLTIM  239 (379)
T ss_dssp             HHHHTTCEEEEECTTCTTCCCCHHHHTCSEEEECTTTTTCSCCC--EEEEEECH-HHHHHHHTCCCSCSTTCHHHHHHHH
T ss_pred             HHHHcCCEEEEEecccCCccccccccCCCEEEecchhhcCCCCc--eEEEEECH-HHHHhhhcCCCCceeecHHHHHHHH
Confidence            47899999999999873333444456999999999999987632  46666554 44444321            00   


Q ss_pred             -H-hcC-----CCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           66 -N-AEG-----SGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        66 -~-~~g-----~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                       . ..|     .+.++...+-+..+++.+     ..+.++..+++..+.+.|++.. + ++.-|     +.        .
T Consensus       240 ~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g-~-~~~~~-----~~--------~  304 (379)
T 3ke3_A          240 RAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKG-I-ESVAA-----EG--------F  304 (379)
T ss_dssp             HHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CBSBC-----TT--------C
T ss_pred             HhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-C-EecCC-----cc--------c
Confidence             0 011     144555555555666654     3445666777778888887763 2 22111     10        0


Q ss_pred             CCCeeEEEEeCCHHHH-HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHH
Q 027424          134 GAGSVLSFLTGSLALS-KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVN  208 (223)
Q Consensus       134 g~ggl~sf~~~~~~~~-~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~  208 (223)
                      ..+.+..|...+.+.. .+.++.-+++ .  +-|...+ +..|                 ...+.+|+|..    -||++
T Consensus       305 ~~~~i~~~~~~~~~~~~~~~L~~~Gi~-v--~~g~~~~-~~~~-----------------~~~~~lRis~~~~~t~~di~  363 (379)
T 3ke3_A          305 EAPGVVVSYTERDDMHKGSAFAEAGLQ-I--AAGVPLK-VGEP-----------------DNFKTFRLGLFGLDKLTDID  363 (379)
T ss_dssp             BCSSEEEEECSCHHHHSSHHHHHTTCC-C--EECCCCS-SCCC-----------------TTCCEEEEECCSHHHHTCHH
T ss_pred             cCceEEEEccCCcchHHHHHHHHCCeE-E--eCCcccc-cccc-----------------CcCCEEEEeCCcCCCHHHHH
Confidence            1344555655544321 2223333332 1  1121111 0000                 13578999986    47899


Q ss_pred             HHHHHHHHHHhc
Q 027424          209 DLISDLDKALRT  220 (223)
Q Consensus       209 dL~~dl~~Al~~  220 (223)
                      .+++-|+++++.
T Consensus       364 ~~~~~l~~~l~~  375 (379)
T 3ke3_A          364 GTVERFEKALDE  375 (379)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988864

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=98.68  E-value=8.5e-08  Score=84.38  Aligned_cols=102  Identities=14%  Similarity=0.071  Sum_probs=60.8

Q ss_pred             cCCEEEEecCCCCCCCc---Cc---ccCCCcEEEecccccccCCcccceeEEEecChh-----HHHHHHHHHHhcC-CCC
Q 027424            5 HGALLLVDNSIMSPVLS---RP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGER-----LAKELYFLQNAEG-SGL   72 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~~---~p---l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~-----~~~~l~~~~~~~g-~~~   72 (223)
                      +|+++|+|++++.....   .|   -..+.++++.|++|.++.++..+|. ++++++.     +...+.......+ ...
T Consensus       210 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (398)
T 3ele_A          210 RPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGY-VLVPDEVYDKAELYAAVCGAGRALGYVCA  288 (398)
T ss_dssp             SCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEE-EECCTTSTTHHHHHHHHHHHHHHTTCCCS
T ss_pred             CCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEE-EEEcchhhhHHHHHHHHHHHhhhccccCC
Confidence            89999999998642211   11   1235679999999999866766655 5455541     2333333333333 234


Q ss_pred             ChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      ++...+.+...++... +.++..++...+.+.|++.
T Consensus       289 ~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~L~~~  323 (398)
T 3ele_A          289 PSLFQKMIVKCQGATG-DINAYKENRDLLYEGLTRI  323 (398)
T ss_dssp             CHHHHHHHTTCTTCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHc
Confidence            4455555555554322 3456667778888888875

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=98.68  E-value=1e-07  Score=83.83  Aligned_cols=176  Identities=16%  Similarity=0.155  Sum_probs=100.4

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--------------   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--------------   65 (223)
                      +|+++|+++|+|++++.+.. ...-..|+|+++.|.+|++.|...  .|+++++ +++.+.+....              
T Consensus       163 l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~gg  239 (411)
T 3nnk_A          163 ICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSG--TSPITLS-ARMEEAIRRRKCVEEGIRTDAHRDG  239 (411)
T ss_dssp             HHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSS--EEEEEEC-HHHHHHHHTTCCCCGGGCCTTCCCC
T ss_pred             HHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCc--eEEEEEC-HHHHHHHhhcccccccccccccccc
Confidence            47899999999999754322 333456899999999999766542  4666655 45555543221              


Q ss_pred             ----------------------HhcCCCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCC
Q 027424           66 ----------------------NAEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  118 (223)
Q Consensus        66 ----------------------~~~g~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~  118 (223)
                                            .....+.++.....+..+++.+     ..+.++..+++..+.+.|++. .+ ++..| 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~-  316 (411)
T 3nnk_A          240 DEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GL-ETFGD-  316 (411)
T ss_dssp             SSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CBCSC-
T ss_pred             cCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CC-EeCCC-
Confidence                                  0011123443333344445432     345577778888888888875 32 22212 


Q ss_pred             CCCCcchHHHHhhhCCCCeeEEEEeC---CHHHH-HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCC
Q 027424          119 LPEHPGHELHYSQAKGAGSVLSFLTG---SLALS-KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  194 (223)
Q Consensus       119 l~~~~~~~~~~~~~~g~ggl~sf~~~---~~~~~-~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~  194 (223)
                          +        ....+.++.|.+.   +.+.. +++.++-++. ..++.+        +                 ..
T Consensus       317 ----~--------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~-v~~g~~--------~-----------------~~  358 (411)
T 3nnk_A          317 ----L--------KHKMNNVLGVVIPQGINGDQARKLMLEDFGIE-IGTSFG--------P-----------------LH  358 (411)
T ss_dssp             ----G--------GGBCSSEEEEECCTTCCHHHHHHHHHHHHSEE-EEECCG--------G-----------------GT
T ss_pred             ----c--------ccccccEEEEECCCCCCHHHHHHHHHHhcCeE-EeCccC--------C-----------------CC
Confidence                1        1225778888873   22222 2333333433 111110        0                 13


Q ss_pred             CCeEEEEe-cC----CCHHHHHHHHHHHHhc
Q 027424          195 EDLVRISV-GI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       195 ~~liRlsv-Gl----Ed~~dL~~dl~~Al~~  220 (223)
                      ++.+|||+ |.    |+.+.+++.|+++++.
T Consensus       359 ~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  389 (411)
T 3nnk_A          359 GKVWRIGTMGYNARKDCVMTTLSALEAVLNY  389 (411)
T ss_dssp             TTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCccCcCCHHHHHHHHHHHHHHHHH
Confidence            56899998 84    4467777778777764

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=98.67  E-value=4.2e-07  Score=83.73  Aligned_cols=110  Identities=15%  Similarity=0.068  Sum_probs=68.1

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Cccc-----CCC-------cEEEecccccccC-CcccceeEEEe-cChhHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPLE-----LGA-------DIVMHSATKFIAG-HSDVMAGVLAV-KGERLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl~-----~GA-------Divv~S~tK~l~G-~~d~~~G~v~~-~~~~~~~~l   61 (223)
                      +|+++|++||+|++++...+.     .++.     .+.       -|+++|+||.++| .+..+|.+++. .++++.+.+
T Consensus       263 la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l  342 (498)
T 3ihj_A          263 FAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQL  342 (498)
T ss_dssp             HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHH
T ss_pred             HHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHH
Confidence            478999999999998764332     1111     121       2789999999966 44455444332 466777777


Q ss_pred             HHHHHhcCCCCChHhHHHHHhcH--------------HHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           62 YFLQNAEGSGLAPFDCWICLRGV--------------KTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        62 ~~~~~~~g~~~sp~da~ll~~~l--------------~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ........ +.++.....+...+              +.+..+.++..+++..+.+.|++.|.+
T Consensus       343 ~~~~~~~~-~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~  405 (498)
T 3ihj_A          343 VKLLSVRL-CPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGI  405 (498)
T ss_dssp             HHHHHHSC-CCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             HHHHhccC-CCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            65554332 33433333333222              223445577889999999999998875

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=98.66  E-value=5.1e-07  Score=80.05  Aligned_cols=106  Identities=15%  Similarity=0.027  Sum_probs=68.1

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-----cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-----~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++....    ..++     ..+.|+++.|++|.++.++..+ |+++++ +++.+.+.......+.+
T Consensus       188 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~-~~~~~~l~~~~~~~~~~  265 (411)
T 2o0r_A          188 IAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKI-GWACGP-AELIAGVRAAKQYLSYV  265 (411)
T ss_dssp             HHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCE-EEEECC-HHHHHHHHHHHHHHTSC
T ss_pred             HHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceE-EEEeeC-HHHHHHHHHHHhhccCC
Confidence            47899999999999864321    1112     1478999999999998666555 556554 56767666554433333


Q ss_pred             CChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .++.....+...|+.    +....++..++...+.+.|+++
T Consensus       266 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  306 (411)
T 2o0r_A          266 GGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI  306 (411)
T ss_dssp             CCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            445444444555543    3334466667778888888876

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=98.65  E-value=1.9e-06  Score=76.90  Aligned_cols=108  Identities=21%  Similarity=0.259  Sum_probs=77.8

Q ss_pred             CccccCCEEEEecCCCCCCCc--CcccCCCcEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHhc--------
Q 027424            1 MAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--------   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~--~pl~~GADivv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~--------   68 (223)
                      +|+++|+++|+|++++-++..  .++...+|+++.|++  |.++|   ..+|+++.+++++.+++.......        
T Consensus       160 la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~---~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~  236 (424)
T 2po3_A          160 VADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNA---FEGGAVVTDDADLAARIRALHNFGFDLPGGSP  236 (424)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC---SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCT
T ss_pred             HHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCCccC---CCCeEEEeCCHHHHHHHHHHHhcCcccccccc
Confidence            478999999999998643322  344434799999998  88886   256778776567777665543321        


Q ss_pred             --C--CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           69 --G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        69 --g--~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                        |  ..+++..+.+.+..++.+..+.++..+++..+.+.|++.|.+
T Consensus       237 ~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  283 (424)
T 2po3_A          237 AGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGV  283 (424)
T ss_dssp             TCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTE
T ss_pred             ccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence              1  134566677777777778777888889999999999988765

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=98.65  E-value=1.9e-07  Score=85.20  Aligned_cols=177  Identities=16%  Similarity=0.217  Sum_probs=103.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCc-cc------CCCcEEEecccccccCCcccceeEEEecChhH-HHHHHHHHHhc----
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP-LE------LGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNAE----   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p-l~------~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~-~~~l~~~~~~~----   68 (223)
                      +||++|++++||.+++......| ..      .+||.++-|.||+++++  .-+|+++++++.. .+.+.....++    
T Consensus       260 la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p--~~~G~l~~~~~~~l~~~~~~~~~yl~~~~  337 (486)
T 1js3_A          260 ICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN--FDCSAMWVKRRTDLTGAFKLDPVYLKHSH  337 (486)
T ss_dssp             HHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC--SSCEEEEESCHHHHHGGGC----------
T ss_pred             HHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC--cceEEEEEeCHHHHHHHhcCCchhhCCCc
Confidence            47899999999999976543221 11      27999999999999865  2357777777653 22221100000    


Q ss_pred             ----------------CCCCChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHh
Q 027424           69 ----------------GSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  130 (223)
Q Consensus        69 ----------------g~~~sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~  130 (223)
                                      +........|..++  +.+.+..++++..+++..+++.|++.|.++ +..|     |       
T Consensus       338 ~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~-----~-------  404 (486)
T 1js3_A          338 QGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFE-VCAE-----V-------  404 (486)
T ss_dssp             --CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE-ECSC-----C-------
T ss_pred             ccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeE-EeCC-----C-------
Confidence                            00011223333333  445577778999999999999999998874 3332     1       


Q ss_pred             hhCCCCeeEEEEeC-CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-----
Q 027424          131 QAKGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-----  204 (223)
Q Consensus       131 ~~~g~ggl~sf~~~-~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-----  204 (223)
                          .+++++|.+. ......++.+.|.-  .+    .   ++..|..   .          + ..+.+|+|++-     
T Consensus       405 ----~~~~v~f~~~~~~~~~~~l~~~L~~--~g----~---~~~~~~~---~----------~-~~~~lRi~~~~~~~t~  457 (486)
T 1js3_A          405 ----TLGLVCFRLKGSDGLNEALLERINS--AR----K---IHLVPCR---L----------R-GQFVLRFAICSRKVES  457 (486)
T ss_dssp             ----CSSEEEEEESSCHHHHHHHHHHHHH--HT----S---CBCEEEE---E----------T-TEEEEEEECCCTTCCH
T ss_pred             ----ceeEEEEEecChHHHHHHHHHHHHh--cC----C---EEEEEEE---E----------C-CEEEEEEEeCCCCCCH
Confidence                3678889874 32223445444421  11    0   0001110   0          0 24689999852     


Q ss_pred             CCHHHHHHHHHHHHh
Q 027424          205 EDVNDLISDLDKALR  219 (223)
Q Consensus       205 Ed~~dL~~dl~~Al~  219 (223)
                      ||.+.+++.|+++++
T Consensus       458 ~di~~~~~~l~~~~~  472 (486)
T 1js3_A          458 GHVRLAWEHIRGLAA  472 (486)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            367778888877764

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=98.65  E-value=1.3e-08  Score=93.30  Aligned_cols=105  Identities=13%  Similarity=0.108  Sum_probs=72.8

Q ss_pred             CccccCCEEEEecCCCCCCCc------CcccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC-CCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS------RPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~------~pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g-~~~   72 (223)
                      +||++|+||+|||+||.++.+      ..++. |||.+++|+||++.  +.+++++++.++++..+++..  .+.| .+.
T Consensus       223 ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~--a~~~~~~l~~rd~~~~~~~~~--~~~g~~s~  298 (450)
T 3bc8_A          223 ICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFM--VPVGGAIIAGFNEPFIQDISK--MYPGRASA  298 (450)
T ss_dssp             HHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHS--CCSSCEEEEESCHHHHHHHHH--HSCSCBCS
T ss_pred             HHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCC--chhccEEEEecCHHHHHHHHH--HhhcCCcc
Confidence            589999999999999986532      23344 89999999999998  778899888877665444422  2222 234


Q ss_pred             Ch-HhHHHHHhc--HHHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           73 AP-FDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        73 sp-~da~ll~~~--l~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      || .+.|..++.  .+-+...+++..+++..+++.|++.+
T Consensus       299 SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~  338 (450)
T 3bc8_A          299 SPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA  338 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            66 344443332  23344556777899999999998766

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=98.65  E-value=2.7e-07  Score=81.62  Aligned_cols=171  Identities=9%  Similarity=0.076  Sum_probs=98.1

Q ss_pred             CccccCCEEEEecCCCCCCCc----C--ccc-C--CCc--EEEecccccccCCcccceeEEEe--cChh----HHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----R--PLE-L--GAD--IVMHSATKFIAGHSDVMAGVLAV--KGER----LAKELYF   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~--pl~-~--GAD--ivv~S~tK~l~G~~d~~~G~v~~--~~~~----~~~~l~~   63 (223)
                      +|+++|+++|+|+++......    .  ++. +  ..|  |++.|++|.++++|..+|+++ +  .+++    +.+.+..
T Consensus       211 ~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~-~~~~~~~~~~~~~~~~~~  289 (412)
T 1ajs_A          211 VMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLT-VVAKEPDSILRVLSQMQK  289 (412)
T ss_dssp             HHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEE-EECSSHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEE-EecCCHHHHHHHHHHHHH
Confidence            378899999999997543221    1  222 1  234  889999999998787776654 4  2344    3333333


Q ss_pred             HHHhcCCCCChHhHHHHHhcHHHH----------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           64 LQNAEGSGLAPFDCWICLRGVKTM----------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        64 ~~~~~g~~~sp~da~ll~~~l~tl----------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                      .......+.++...+.+...|+..          ....++..++...+.+.|++.+.      |.     ......    
T Consensus       290 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~~-----~~~~~~----  354 (412)
T 1ajs_A          290 IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT------PG-----TWNHIT----  354 (412)
T ss_dssp             HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------SS-----CCHHHH----
T ss_pred             HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------CC-----CeeEEc----
Confidence            232333334666666666666532          33346667777888888887641      10     011111    


Q ss_pred             CCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec---CCCHHHH
Q 027424          134 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDL  210 (223)
Q Consensus       134 g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG---lEd~~dL  210 (223)
                      ..||++.+.--+.+.+.+.++.-++.-             .|                    + +|||++   -|+.+.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~gv~v-------------~~--------------------~-~Ris~~~~~~~~i~~~  400 (412)
T 1ajs_A          355 DQIGMFSFTGLNPKQVEYLINQKHIYL-------------LP--------------------S-GRINMCGLTTKNLDYV  400 (412)
T ss_dssp             HCCSSEEECCCCHHHHHHHHHTTCEEC-------------CT--------------------T-SEEEGGGCCTTTHHHH
T ss_pred             CCCceEEEeCCCHHHHHHHHHhCCEEe-------------cC--------------------C-cEEEeeeCCHHHHHHH
Confidence            135565553212333344343333321             01                    1 599999   3778999


Q ss_pred             HHHHHHHHhcC
Q 027424          211 ISDLDKALRTG  221 (223)
Q Consensus       211 ~~dl~~Al~~~  221 (223)
                      ++.|+++++..
T Consensus       401 ~~~l~~~l~~~  411 (412)
T 1ajs_A          401 ATSIHEAVTKI  411 (412)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999998754

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=98.64  E-value=3.3e-07  Score=82.82  Aligned_cols=178  Identities=20%  Similarity=0.172  Sum_probs=102.2

Q ss_pred             CccccCCEEEEecCCCCC-----CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHh--cCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSP-----VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-----~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~--~g~~~s   73 (223)
                      +|+++|++|++|+++..+     ....+++ ++|+++.|++|+++|+   .+|+++.++ ++.+.+......  .|....
T Consensus       208 l~~~~g~lli~Dea~~~g~~~~g~~~~~~~-~~di~~~s~sK~l~G~---~gG~i~~~~-~~~~~l~~~~~~~~~~~~~~  282 (447)
T 3h7f_A          208 IADEVGAKLLVDMAHFAGLVAAGLHPSPVP-HADVVSTTVHKTLGGG---RSGLIVGKQ-QYAKAINSAVFPGQQGGPLM  282 (447)
T ss_dssp             HHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSEEEEESSGGGCCC---SCEEEEECG-GGHHHHHHHHTTTTCSSCCH
T ss_pred             HHHHcCCEEEEECCchhhhhcCCCCCCCCC-CCcEEEecCCcCCCCC---CeEEEEECH-HHHHHHhhhcCCcccCCccH
Confidence            478999999999996442     2345554 7999999999999875   468786654 566666543221  222222


Q ss_pred             hHhHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcC----CCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           74 PFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        74 p~da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~----p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      +.-+. +..++.     .+..+.++..+|+..+.++|++.    |++ .+..++               ..+.++.+++.
T Consensus       283 ~~~~a-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~-~~~~~~---------------~~~~~~~~~~~  345 (447)
T 3h7f_A          283 HVIAG-KAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGV-SVVSGG---------------TDVHLVLVDLR  345 (447)
T ss_dssp             HHHHH-HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTC-EEGGGS---------------CSSSEEEEECT
T ss_pred             HHHHH-HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCe-EEecCC---------------CCCCEEEEEcC
Confidence            21122 112222     45567788999999999999876    333 222111               12344555552


Q ss_pred             ----CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec--------CCCHHHHHH
Q 027424          145 ----SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLIS  212 (223)
Q Consensus       145 ----~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG--------lEd~~dL~~  212 (223)
                          +.+.+.++++.-++.-...      +   .|....           ....++-+||+..        -|+.+.+++
T Consensus       346 ~~~~~~~~~~~~l~~~GI~v~~~------~---i~~~~~-----------~p~~~~~lRig~~~~~~~~~~~eei~~~~~  405 (447)
T 3h7f_A          346 DSPLDGQAAEDLLHEVGITVNRN------A---VPNDPR-----------PPMVTSGLRIGTPALATRGFGDTEFTEVAD  405 (447)
T ss_dssp             TSSCCHHHHHHHHHHTTEECBC---------------------------------CEEEEECHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHCCeEEecc------c---CCCCCC-----------CCCCCCceeccCHHHhhCCCCHHHHHHHHH
Confidence                3455666666655442110      0   111000           0012455999853        377888999


Q ss_pred             HHHHHHhc
Q 027424          213 DLDKALRT  220 (223)
Q Consensus       213 dl~~Al~~  220 (223)
                      -|+++|+.
T Consensus       406 ~l~~~l~~  413 (447)
T 3h7f_A          406 IIATALAT  413 (447)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhc
Confidence            99888864

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=98.64  E-value=1.4e-06  Score=77.42  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=69.3

Q ss_pred             CCEEEEecCCCCCCCcCcc--cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHHHhc
Q 027424            6 GALLLVDNSIMSPVLSRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG   83 (223)
Q Consensus         6 g~~lvVDnT~~s~~~~~pl--~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll~~~   83 (223)
                      ++++|+|+++..+. ..++  ..+.+|++.|+||+++..|..+|. +++.++++.+.+...+.....+.++.....+...
T Consensus       185 ~~~ii~De~y~~~~-~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~-~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~  262 (391)
T 3bwn_A          185 EAKVIHDFAYYWPH-YTPITRRQDHDIMLFTFSKITGHAGSRIGW-ALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKI  262 (391)
T ss_dssp             CCEEEEECTTCSTT-TSCCCCCBCCSEEEEEHHHHHSCGGGCEEE-EEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCCC-CCccccCCCCeEEEEechhhcCCCccceEE-EEecCHHHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence            39999999987321 1233  246789999999999877777765 4454567777776665543334566555555555


Q ss_pred             HHHH-------------HHH-HHHHHhHHHHHHHHHhcCCCe
Q 027424           84 VKTM-------------ALR-VEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        84 l~tl-------------~~R-~~~~~~na~~la~~L~~~p~v  111 (223)
                      |+.-             ..+ .++..++...+.+.|+++|.+
T Consensus       263 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  304 (391)
T 3bwn_A          263 LNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAF  304 (391)
T ss_dssp             HHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred             HhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            5542             222 355567778888999988754

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=98.64  E-value=1.6e-06  Score=79.66  Aligned_cols=110  Identities=10%  Similarity=0.066  Sum_probs=67.4

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Ccc-----cCC--C----cEEEecccccccC-CcccceeEEEec-ChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPL-----ELG--A----DIVMHSATKFIAG-HSDVMAGVLAVK-GERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl-----~~G--A----Divv~S~tK~l~G-~~d~~~G~v~~~-~~~~~~~l~   62 (223)
                      +|+++|+++++|++++...+.     .++     ++|  .    .|+++|+||.+.| .+..+|++++.+ ++++.+.+.
T Consensus       265 la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~  344 (500)
T 3tcm_A          265 FCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIY  344 (500)
T ss_dssp             HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHH
T ss_pred             HHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHH
Confidence            378999999999998654321     121     121  2    2788999999943 344554444322 456767766


Q ss_pred             HHHHhcCCCCChHhHHHHHhcH--------------HHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           63 FLQNAEGSGLAPFDCWICLRGV--------------KTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        63 ~~~~~~g~~~sp~da~ll~~~l--------------~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ...... .+.++...+.+...+              +.+..+.++..+++..+.+.|++.|++
T Consensus       345 ~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~  406 (500)
T 3tcm_A          345 KIASVN-LCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGI  406 (500)
T ss_dssp             HHHHTT-CCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             HHHhcc-cCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            555432 234444344433333              233445577788899999999998776

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=98.64  E-value=5.1e-07  Score=81.42  Aligned_cols=107  Identities=8%  Similarity=-0.032  Sum_probs=70.2

Q ss_pred             CccccCCEEEEecCCCCCCC------cCcc---cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL------SRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------~~pl---~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|+|++++....      ...+   ..+.|+++.|++|+++..+..+| +++++++++.+.+.........+
T Consensus       229 l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG-~~~~~~~~l~~~l~~~~~~~~~~  307 (447)
T 3b46_A          229 ICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIG-WVLSLNAELLSYAAKAHTRICFA  307 (447)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCE-EEECSCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhE-EEEeCCHHHHHHHHHHHhhccCC
Confidence            47899999999999864221      1112   24789999999999986676664 45553567777666544333334


Q ss_pred             CChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~  108 (223)
                      .++...+.+...|+..      ....++..++...+.+.|++.
T Consensus       308 ~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  350 (447)
T 3b46_A          308 SPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL  350 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            5565555555666543      223456667777888888876

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=98.63  E-value=3.8e-08  Score=86.71  Aligned_cols=103  Identities=16%  Similarity=0.190  Sum_probs=65.4

Q ss_pred             CccccCCEEEEecCCCCCCCc-------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|++++ ++..       .....++|++  |++|++++ +..+|+ +++++ ++.+.+.........+.+
T Consensus       214 l~~~~~~~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-g~~~G~-~~~~~-~~~~~l~~~~~~~~~~~~  287 (395)
T 1vef_A          214 ITQEKGALLILDEIQT-GMGRTGKRFAFEHFGIVPDIL--TLAKALGG-GVPLGV-AVMRE-EVARSMPKGGHGTTFGGN  287 (395)
T ss_dssp             HHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EECGGGGT-TSSCEE-EEEEH-HHHHTSCTTSSCCSSTTC
T ss_pred             HHHHcCCEEEEEeccc-CCccCCchhHhhhcCCCCCEE--EEcccccC-CCceEE-EEehH-HHHhhhccCCcCCCcCCC
Confidence            4789999999999987 3321       1233468977  88999997 655655 44554 454443221111122356


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhcCC
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~~p  109 (223)
                      +..++.+...++.+..  ..++..+++..+.+.|++.+
T Consensus       288 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~  325 (395)
T 1vef_A          288 PLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIP  325 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence            7777777777776643  34666777788888887754

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=98.63  E-value=2.3e-07  Score=81.15  Aligned_cols=103  Identities=11%  Similarity=0.088  Sum_probs=67.7

Q ss_pred             ccccCCEEEEecCCCCCCC-cCccc----CC-CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            2 AHAHGALLLVDNSIMSPVL-SRPLE----LG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~-~~pl~----~G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      ++.+++++|+|++++.... ..++.    .+ .++++.|++|.++..+..+ |++++++ ++.+.+.......  +.++.
T Consensus       190 ~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~-~~~~~l~~~~~~~--~~~~~  265 (369)
T 3cq5_A          190 INVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRL-GYFVANP-AFIDAVMLVRLPY--HLSAL  265 (369)
T ss_dssp             HHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCC-EEEEECT-HHHHHHHTTSCTT--CSCHH
T ss_pred             HHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccce-EEEEeCH-HHHHHHHHcCCCC--CCCHH
Confidence            5677899999999854332 22232    24 5699999999997666555 5565654 5655554332222  35676


Q ss_pred             hHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcC
Q 027424           76 DCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        76 da~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ..+.+...++.   +..+.++..++...+.+.|++.
T Consensus       266 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  301 (369)
T 3cq5_A          266 SQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL  301 (369)
T ss_dssp             HHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            66666666653   4455677788888899999873

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=98.62  E-value=5.8e-08  Score=87.03  Aligned_cols=169  Identities=12%  Similarity=0.200  Sum_probs=98.2

Q ss_pred             CccccCCEEEEecCCCCCCCc-------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++. ++..       .......|++  |++|.+++ +..+|+ +++++ ++.+.+...........+
T Consensus       230 l~~~~gi~lI~Dev~~-g~~~~g~~~~~~~~~~~~dii--t~sK~l~~-G~~iG~-~~~~~-~l~~~l~~~~~~~t~~~~  303 (420)
T 2pb2_A          230 LCDEHQALLVFDEVQC-GMGRTGDLFAYMHYGVTPDIL--TSAKALGG-GFPVSA-MLTTQ-EIASAFHVGSHGSTYGGN  303 (420)
T ss_dssp             HHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSCCEE-EEECH-HHHTTCC----CCEECCC
T ss_pred             HHHHcCCEEEEEcCCc-CcccCCcHHHHHhcCCCCCeE--EecccccC-CCceEE-EEEhH-HHHHhhcCCCcCcccCcC
Confidence            4789999999999984 4321       1223457887  68999995 555555 54554 454444321111122457


Q ss_pred             hHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhcC----CCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHH
Q 027424           74 PFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  147 (223)
Q Consensus        74 p~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~~----p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~  147 (223)
                      |..+......|+.+.  ...++..++...+.+.|++.    |.+..+                  ++.|.++.|++....
T Consensus       304 ~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~v~~~~~~  365 (420)
T 2pb2_A          304 PLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI------------------RGMGLLIGAELKPKY  365 (420)
T ss_dssp             HHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE------------------EEETTEEEEEECGGG
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EecceEEEEEECCCc
Confidence            877777777887763  33466666677777766653    433221                  235788899884321


Q ss_pred             --HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe----cCCCHHHHHHHHHHHHhc
Q 027424          148 --LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKALRT  220 (223)
Q Consensus       148 --~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv----GlEd~~dL~~dl~~Al~~  220 (223)
                        ...+|.+.+.--.+          +..|.                 .++.+|||.    .-|+.+++++.|+++++.
T Consensus       366 ~~~~~~l~~~l~~~Gi----------~v~~~-----------------~~~~iRl~~~~~~t~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          366 KGRARDFLYAGAEAGV----------MVLNA-----------------GADVMRFAPSLVVEEADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             TTCHHHHHHHHHHTTE----------ECEES-----------------STTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCC----------EEEeC-----------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence              23444444321111          01111                 146799994    356788888888888764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=98.62  E-value=5.3e-07  Score=79.84  Aligned_cols=110  Identities=9%  Similarity=-0.004  Sum_probs=68.8

Q ss_pred             CccccCCEEEEecCCCCCCC--------cCcc-cC---CCcEEEecccccccCCcccceeEEEecCh-hHHHHH----HH
Q 027424            1 MAHAHGALLLVDNSIMSPVL--------SRPL-EL---GADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKEL----YF   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~--------~~pl-~~---GADivv~S~tK~l~G~~d~~~G~v~~~~~-~~~~~l----~~   63 (223)
                      +|+++|++||+|++++....        ..++ .+   +-++++.|++|.+++.+..+|. ++++++ ++.+.+    +.
T Consensus       205 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~-~~~~~~~~~~~~~~~~~~~  283 (416)
T 1bw0_A          205 LAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGW-LLYVDPHGNGPSFLEGLKR  283 (416)
T ss_dssp             HHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEE-EEEECTTCSCHHHHHHHHH
T ss_pred             HHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEE-EEeeCchhhHHHHHHHHHH
Confidence            37889999999999864211        1122 11   2258899999998877766655 545554 232222    22


Q ss_pred             HHHhcCCCCChHhHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCee
Q 027424           64 LQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVK  112 (223)
Q Consensus        64 ~~~~~g~~~sp~da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~  112 (223)
                      ..... .+.++...+.+...|+     .+..+.++..++...+.+.|++.|.+.
T Consensus       284 ~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  336 (416)
T 1bw0_A          284 VGMLV-CGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA  336 (416)
T ss_dssp             HHHHH-TCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred             Hhccc-cCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            21112 2456766666666665     245556778888999999999887763

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=98.62  E-value=1.1e-06  Score=77.22  Aligned_cols=106  Identities=13%  Similarity=0.115  Sum_probs=68.0

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccC--CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~--GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|++||+|++++....    .....+  +.+|++.|++|.++.+|..+|. +++ ++++.+.+...+.......++
T Consensus       192 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~-~~~-~~~~~~~l~~~~~~~~~~~~~  269 (385)
T 1b5p_A          192 LAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGY-ACG-PKEVIKAMASVSRQSTTSPDT  269 (385)
T ss_dssp             HHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEE-EEC-CHHHHHHHHHHHHTTTCSCCH
T ss_pred             HHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEE-EEe-CHHHHHHHHHHHhhccCCCCH
Confidence            36889999999999864322    111223  5689999999999877767655 544 456767766555443334555


Q ss_pred             HhHHHHHhcHH-------HHHHHHHHHHhHHHHHHHHHhcC
Q 027424           75 FDCWICLRGVK-------TMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        75 ~da~ll~~~l~-------tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      ...+.+...++       .+....++..++...+.+.|+++
T Consensus       270 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (385)
T 1b5p_A          270 IAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL  310 (385)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            54544444443       23334466667777788888875

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=98.62  E-value=1.7e-07  Score=82.16  Aligned_cols=177  Identities=14%  Similarity=0.134  Sum_probs=97.1

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH--------------H
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--------------Q   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~--------------~   65 (223)
                      +|+++|+++|+|++++-+.. ...-.+|+|+++.|.+|+++|...+  |+++.++ ++.+.+...              +
T Consensus       168 l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  244 (396)
T 2ch1_A          168 ICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGI--TPISISP-KALDVIRNRRTKSKVFYWDLLLLG  244 (396)
T ss_dssp             HHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSC--EEEEECH-HHHHHHHTCSSCCSCGGGCHHHHH
T ss_pred             HHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCe--EEEEECH-HHHHhhhhccCcccceEechHHHH
Confidence            47889999999999862211 1122357899999999998876433  6676654 454444210              1


Q ss_pred             HhcC---------CCCChHhHHHHHhcHHH-----HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhh
Q 027424           66 NAEG---------SGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  131 (223)
Q Consensus        66 ~~~g---------~~~sp~da~ll~~~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~  131 (223)
                      ...+         .+.+....+.+...++.     +..+.++..+++..+.+.|++. ++ ++.-|    ...       
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~----~~~-------  311 (396)
T 2ch1_A          245 NYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GL-DIFVK----DPR-------  311 (396)
T ss_dssp             HHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TC-CBSSC----SGG-------
T ss_pred             HhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CC-eeccC----Ccc-------
Confidence            1111         12233333333444444     3345677788888888888876 33 22212    100       


Q ss_pred             hCCCCeeEEEEeC---CHHHH-HHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe-cC--
Q 027424          132 AKGAGSVLSFLTG---SLALS-KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-GI--  204 (223)
Q Consensus       132 ~~g~ggl~sf~~~---~~~~~-~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv-Gl--  204 (223)
                       ...+.++.|.+.   +.+.. +++.+.-++.   +.-|.      .+                 ..++.+|||+ |.  
T Consensus       312 -~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~---v~~g~------~~-----------------~~~~~iRi~~~~~~~  364 (396)
T 2ch1_A          312 -HRLPTVTGIMIPKGVDWWKVSQYAMNNFSLE---VQGGL------GP-----------------TFGKAWRVGIMGECS  364 (396)
T ss_dssp             -GBCTTEEEEECCTTCCHHHHHHHHHHHHCBC---CBCCC------GG-----------------GTTTEEEEECCGGGC
T ss_pred             -ccCCceEEEEcCCCCCHHHHHHHHHHhCCEE---EecCc------cc-----------------cCCCEEEEECCCCcC
Confidence             014568888873   22222 2222322332   11111      00                 1357899999 73  


Q ss_pred             --CCHHHHHHHHHHHHhc
Q 027424          205 --EDVNDLISDLDKALRT  220 (223)
Q Consensus       205 --Ed~~dL~~dl~~Al~~  220 (223)
                        ||.+.+++.|++++++
T Consensus       365 ~~e~i~~~~~~l~~~l~~  382 (396)
T 2ch1_A          365 TVQKIQFYLYGFKESLKA  382 (396)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence              4578888888888763

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=98.62  E-value=1.4e-07  Score=87.33  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=72.8

Q ss_pred             CccccCCEEEEecCCCCCCCcCc-----cc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-HHhc----
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP-----LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAE----   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p-----l~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-~~~~----   68 (223)
                      +|+++|++++||.+++.+....|     +.  .+||+++.|.||+++++-  .+|+++++++.+....... ..++    
T Consensus       273 ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~--g~g~l~~~~~~~~~~~~~~~~~yl~~~~  350 (511)
T 3vp6_A          273 ICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL--QCSAILVKEKGILQGCNQMHASYLFQQD  350 (511)
T ss_dssp             HHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESSTTHHHHHHCCCCTTTCCSS
T ss_pred             HHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCc--CeEEEEEeCHHHHHHHhccCCccccCcc
Confidence            48899999999999987654322     11  368999999999998763  3466667766543332110 0010    


Q ss_pred             ----------------CCCCChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCee
Q 027424           69 ----------------GSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVK  112 (223)
Q Consensus        69 ----------------g~~~sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~  112 (223)
                                      +........|..++  +.+.+..++++..+++..++++|++.|.++
T Consensus       351 ~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~  412 (511)
T 3vp6_A          351 KHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFE  412 (511)
T ss_dssp             CSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEE
T ss_pred             cccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence                            00011233444444  445678889999999999999999999874

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=98.61  E-value=2.2e-07  Score=82.07  Aligned_cols=174  Identities=15%  Similarity=0.098  Sum_probs=98.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCcc-cCCCcEEEeccccccc-CCcccceeEEEecChhHHHHHHHH--------------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPL-ELGADIVMHSATKFIA-GHSDVMAGVLAVKGERLAKELYFL--------------   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl-~~GADivv~S~tK~l~-G~~d~~~G~v~~~~~~~~~~l~~~--------------   64 (223)
                      +|+++|+++|+|++++.+...-++ .+|+|+++.|++|++. |.+- + |+++++++ +.+++...              
T Consensus       190 l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~-~-g~l~~~~~-~~~~l~~~~~g~~g~~~~~~~~  266 (416)
T 1qz9_A          190 LSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS-Q-AFVWVSPQ-LCDLVPQPLSGWFGHSRQFAME  266 (416)
T ss_dssp             HHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC-C-CEEEECTT-TTTTSCCSCCCGGGBCTTSCCC
T ss_pred             HHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCC-e-EEEEECHH-HHhccCCCccccCccccccCCC
Confidence            478999999999998744321122 3589999999999985 4431 2 66766654 33332211              


Q ss_pred             ---------HHhcCCCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcC-C--CeeEEEcCCCCCCcchHH
Q 027424           65 ---------QNAEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASH-P--RVKKVNYAGLPEHPGHEL  127 (223)
Q Consensus        65 ---------~~~~g~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~-p--~v~~V~yP~l~~~~~~~~  127 (223)
                               ......+.++.....+...++.+     ....++..+++..+.+.|++. |  ++ ++..|.-   +    
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-~~~~~~~---~----  338 (416)
T 1qz9_A          267 PRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL-TLVTPRE---H----  338 (416)
T ss_dssp             SSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-EECSCSS---G----
T ss_pred             CccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCe-EEeCCCC---H----
Confidence                     01111133444444444555544     334577778888888888875 5  44 3333310   0    


Q ss_pred             HHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----
Q 027424          128 HYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----  203 (223)
Q Consensus       128 ~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----  203 (223)
                           ...++++.|.+.+.+...+.+..-++.   +          .+                 ..++.+|||++    
T Consensus       339 -----~~~~~~~~~~~~~~~~l~~~l~~~gi~---~----------~~-----------------~~~~~lRis~~~~~~  383 (416)
T 1qz9_A          339 -----AKRGSHVSFEHPEGYAVIQALIDRGVI---G----------DY-----------------REPRIMRFGFTPLYT  383 (416)
T ss_dssp             -----GGBCSEEEEECTTHHHHHHHHHTTTEE---C----------EE-----------------ETTTEEEEECCTTTC
T ss_pred             -----HHcCCEEEEecCCHHHHHHHHHhCCcE---e----------cc-----------------CCCCeEEEeCcccCC
Confidence                 013578888885432222222222222   0          00                 03578999997    


Q ss_pred             -CCCHHHHHHHHHHHHhc
Q 027424          204 -IEDVNDLISDLDKALRT  220 (223)
Q Consensus       204 -lEd~~dL~~dl~~Al~~  220 (223)
                       -||.+.+++-|+++++.
T Consensus       384 t~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          384 TFTEVWDAVQILGEILDR  401 (416)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence             34567777777777764

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=98.60  E-value=8.7e-07  Score=77.04  Aligned_cols=174  Identities=14%  Similarity=0.086  Sum_probs=95.3

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-------------HH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------------QN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-------------~~   66 (223)
                      +|+++|+++|+|++.+.... ...-++|+|+++.|++|+++|...  .|+++.+ +++.+++...             ..
T Consensus       169 l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  245 (376)
T 3f0h_A          169 FCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPG--ISVIVLA-PRGVERVEKSKVRTMYFDLKDALKN  245 (376)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSS--CEEEEEC-HHHHHHHHTCCCCCSTTCHHHHHHH
T ss_pred             HHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCc--eEEEEEC-HHHHHHhhcCCCCceeecHHHHHhh
Confidence            47899999999998754332 122235899999999999994432  3556554 4555544310             00


Q ss_pred             --hcC--CCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCC
Q 027424           67 --AEG--SGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  136 (223)
Q Consensus        67 --~~g--~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g  136 (223)
                        ..+  .+.+....+.+..+++.+      ..+.++..+++..+.+.|++.+ + .+..|               ...+
T Consensus       246 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~-~~~~~---------------~~~~  308 (376)
T 3f0h_A          246 QERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP-F-ELVSE---------------SPAN  308 (376)
T ss_dssp             HTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-E-EECCS---------------SBBT
T ss_pred             cccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-C-ccCcc---------------ccCc
Confidence              001  112222223344455433      3345666777788888888765 2 23221               0134


Q ss_pred             eeEEEEeC--CHHH-HHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHH
Q 027424          137 SVLSFLTG--SLAL-SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVND  209 (223)
Q Consensus       137 gl~sf~~~--~~~~-~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~d  209 (223)
                      +++.+...  +.+. .+++.++.++. ..+..|        +                 ..++.+|||++.    |+.+.
T Consensus       309 ~~~~~~~~~~~~~~l~~~l~~~~gi~-v~~g~~--------~-----------------~~~~~lRis~~~~~t~e~i~~  362 (376)
T 3f0h_A          309 GVTSVHPTTANAYDIFLKLKDEYGIW-ICPNGG--------E-----------------MKDTIFRVGHIGALTHEDNTT  362 (376)
T ss_dssp             TEEEEEESSSCHHHHHHHHHHHSSEE-CEECCG--------G-----------------GTTTCEEEECCSSCCHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHHhCCEE-EecCcc--------c-----------------cCCCEEEEecCCCCCHHHHHH
Confidence            55666542  2233 33333332443 111110        0                 134679999985    56777


Q ss_pred             HHHHHHHHHhc
Q 027424          210 LISDLDKALRT  220 (223)
Q Consensus       210 L~~dl~~Al~~  220 (223)
                      +++-|+++++.
T Consensus       363 ~~~~l~~~l~~  373 (376)
T 3f0h_A          363 LVNAFKDLQKR  373 (376)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            88888888764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=98.60  E-value=4.8e-07  Score=80.93  Aligned_cols=107  Identities=14%  Similarity=0.054  Sum_probs=65.3

Q ss_pred             CccccCCEEEEecCCCCCCC------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|++++.++.      ..+...+.++++.|++|. .+.+..+ |+++. ++++.+.+.......+...++
T Consensus       234 ~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~-G~~~~-~~~l~~~~~~~~~~~~~~~~~  310 (444)
T 3if2_A          234 IAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRT-GIIVA-DAKVIEAVSAMNAVVNLAPTR  310 (444)
T ss_dssp             HHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCC-EEEEC-CHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCce-EEEEE-CHHHHHHHHHHHHhccCCCCh
Confidence            47899999999999875321      112224678999999997 5555554 45544 566777776655544444566


Q ss_pred             HhHHHHHhcHHHH--H---H--HHHHHHhHHHHHHHHHhc-CCC
Q 027424           75 FDCWICLRGVKTM--A---L--RVEKQQDNAQKIAEFLAS-HPR  110 (223)
Q Consensus        75 ~da~ll~~~l~tl--~---~--R~~~~~~na~~la~~L~~-~p~  110 (223)
                      .....+...++..  .   .  ..+...++...+.+.|++ .|.
T Consensus       311 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  354 (444)
T 3if2_A          311 FGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGD  354 (444)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5555555555431  1   1  123445566667777765 344

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=98.60  E-value=6e-07  Score=79.53  Aligned_cols=109  Identities=11%  Similarity=0.105  Sum_probs=68.8

Q ss_pred             CccccCCEEEEecCCCCCCCcC------cc----cCCC-cEEEecccccccCCcccceeEE-EecChh----HHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR------PL----ELGA-DIVMHSATKFIAGHSDVMAGVL-AVKGER----LAKELYFL   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~------pl----~~GA-Divv~S~tK~l~G~~d~~~G~v-~~~~~~----~~~~l~~~   64 (223)
                      +|+++|+++|+|++++......      ++    ..+. .|++.|++|+++.+|..+|.++ ++.+++    +.+.+...
T Consensus       211 ~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~  290 (409)
T 4eu1_A          211 VIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALL  290 (409)
T ss_dssp             HHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHH
Confidence            3789999999999986432211      11    2222 3789999999988888887752 345555    44445444


Q ss_pred             HHhcCCCCChHhHHHHHhcHHH----------HHHHHHHHHhHHHHHHHHHhcCC
Q 027424           65 QNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        65 ~~~~g~~~sp~da~ll~~~l~t----------l~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ......+.++...+.+...++.          +..+.++..++...+.+.|++.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  345 (409)
T 4eu1_A          291 IRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG  345 (409)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3333334456666666555543          33445677778888888888764

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=98.60  E-value=4.7e-07  Score=83.46  Aligned_cols=110  Identities=18%  Similarity=0.216  Sum_probs=70.6

Q ss_pred             CccccCCEEEEecCCCCCCCcCc-----cc--CCCcEEEecccccccCCcccceeEEEecCh-hHHHHHHH-HHHhc-CC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP-----LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKELYF-LQNAE-GS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p-----l~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~-~~~~~l~~-~~~~~-g~   70 (223)
                      +||++|++++||++++.+....+     +.  .++|+++-|.||+++++.+  .|+++++++ .+.++... ...+. +.
T Consensus       284 la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g--~G~l~~~~~~~~~~~~~~~~~~yl~~~  361 (515)
T 2jis_A          284 VCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQ--CSALLLQDTSNLLKRCHGSQASYLFQQ  361 (515)
T ss_dssp             HHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESCCSCHHHHHHCC--------
T ss_pred             HHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCC--eeEEEEeChHHHHHHHhcCCchhccCC
Confidence            47899999999999876654332     33  2799999999999987642  466777765 44333110 00000 00


Q ss_pred             -------------------CCChHhHHHHHhcH--HHHHHHHHHHHhHHHHHHHHHhcCCCee
Q 027424           71 -------------------GLAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVK  112 (223)
Q Consensus        71 -------------------~~sp~da~ll~~~l--~tl~~R~~~~~~na~~la~~L~~~p~v~  112 (223)
                                         -......|.+++.+  +.+...+++..+++..+++.|++.|.++
T Consensus       362 ~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~  424 (515)
T 2jis_A          362 DKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFE  424 (515)
T ss_dssp             -CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             cccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence                               01123344444444  3356677888999999999999988863

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=98.59  E-value=1.1e-06  Score=78.31  Aligned_cols=107  Identities=12%  Similarity=0.087  Sum_probs=67.7

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc----CCCcEEEecccccccCCcccceeEEEecChh-------HHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGER-------LAKELYFLQ   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~-------~~~~l~~~~   65 (223)
                      +|+++|++||+|++++....    .....    .+.+|++.|++|.++..+..+| +++++++.       +.+.+....
T Consensus       226 la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G-~~~~~~~~~~~~~~~~~~~~~~~~  304 (432)
T 3ei9_A          226 FAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLG-WTVIPKKLLYSDGFPVAKDFNRII  304 (432)
T ss_dssp             HHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCE-EEECCTTCBCTTSCBHHHHHHHHH
T ss_pred             HHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceE-EEEEChHHhhcchHHHHHHHHHHh
Confidence            37899999999999863211    11111    2456999999999986666665 45555543       145555444


Q ss_pred             HhcCCCCChHhHHHHHhcH-----HHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           66 NAEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l-----~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      .....+.++.........+     +.+..+.++..++...+.+.|+++
T Consensus       305 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  352 (432)
T 3ei9_A          305 CTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL  352 (432)
T ss_dssp             HHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            4433345665443333332     335566678888999999999887

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=98.59  E-value=1.5e-06  Score=76.72  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=66.6

Q ss_pred             CccccCCEEEEecCCCCCCC------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++|+|++++.++.      ..|...+.++++.|++|+ ++.+..+| +++. ++++.+.+.......+...++
T Consensus       208 ~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G-~~~~-~~~~~~~~~~~~~~~~~~~~~  284 (417)
T 3g7q_A          208 LANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKL-GLPGSRCG-IIIA-NDKTITAIANMNGIISLAPGG  284 (417)
T ss_dssp             HHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGG-TCTTSCCE-EEEC-CHHHHHHHHHHHHHHCCCCCS
T ss_pred             HHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechhc-cCCCcceE-EEEe-CHHHHHHHHHhhcceeeCCCc
Confidence            47899999999999975321      223335778999999994 66666665 4544 567777777665555555666


Q ss_pred             HhHHHHHhcHHHH--H---H--HHHHHHhHHHHHHHHHhc
Q 027424           75 FDCWICLRGVKTM--A---L--RVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        75 ~da~ll~~~l~tl--~---~--R~~~~~~na~~la~~L~~  107 (223)
                      .....+...++..  .   .  ..++..++...+.+.|++
T Consensus       285 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (417)
T 3g7q_A          285 MGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRR  324 (417)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655555431  1   1  123345566667777766

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=98.58  E-value=6.3e-08  Score=88.00  Aligned_cols=105  Identities=14%  Similarity=0.180  Sum_probs=67.8

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcc-----cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC-C
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL-A   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl-----~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~-s   73 (223)
                      +||++|++++||++++.... ..|.     ..++|+++.|.||++.|+  .-+|+++++++++.+.+.  ....|... .
T Consensus       256 la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p--~g~G~l~~~~~~~~~~l~--~~~~g~~~~~  331 (456)
T 2z67_A          256 ICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP--IGGGLVYSTDAEFIKEIS--LSYPGRASAT  331 (456)
T ss_dssp             HHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC--SSCEEEEESCHHHHHHHH--TTSCSCBCSH
T ss_pred             HHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCC--CCeEEEEEcCHHHHhhcC--cCCCCCCCCC
Confidence            47899999999999875432 2222     228999999999998765  235777776666655542  22334321 2


Q ss_pred             h-HhHHHHHhcH--HHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           74 P-FDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        74 p-~da~ll~~~l--~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      | ...+..+..+  +.+..+.++..+++..+.+.|++.|
T Consensus       332 ~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~  370 (456)
T 2z67_A          332 PVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLS  370 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2 2233333322  3355667888899999999998875

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=98.58  E-value=1.8e-07  Score=81.44  Aligned_cols=104  Identities=13%  Similarity=0.192  Sum_probs=66.4

Q ss_pred             CccccCCEEEEecCCCCCCCcC----cc-cCC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PL-ELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl-~~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|++++. +...    ++ .+|  +|++  |++|.+++ +..+|+ +++++ ++.+.+...........+
T Consensus       201 ~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~d~~--s~SK~~~~-g~~~G~-~~~~~-~~~~~~~~~~~~~~~~~~  274 (375)
T 2eh6_A          201 ICKEKDVLLIIDEVQTG-IGRTGEFYAYQHFNLKPDVI--ALAKGLGG-GVPIGA-ILARE-EVAQSFTPGSHGSTFGGN  274 (375)
T ss_dssp             HHHHHTCEEEEECTTTT-TTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSCCEE-EEEEH-HHHTTCCTTSCCCSSTTC
T ss_pred             HHHHhCCEEEEeccccC-CCCCCcchhhhhcCCCCCEE--EEcccccC-CCCeEE-EEEcH-HHHhhhcCCCCCCCCCCC
Confidence            47899999999999873 3211    12 346  8988  56699986 555555 54554 454443321111122346


Q ss_pred             hHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCC
Q 027424           74 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        74 p~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~  110 (223)
                      +.....+...|+.+....++..+++..+.+.|++.+.
T Consensus       275 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~  311 (375)
T 2eh6_A          275 PLACRAGTVVVDEVEKLLPHVREVGNYFKEKLKELGK  311 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777777777777765567777888888888887653

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=98.56  E-value=1e-07  Score=83.92  Aligned_cols=174  Identities=15%  Similarity=0.221  Sum_probs=97.7

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|++||+|++++..      +.........|++  |++|.+++ +..+ |+++.+ +++.+.+.........+.+|
T Consensus       212 l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~r~-G~~~~~-~~~~~~~~~~~~~~~~~~~~  286 (406)
T 4adb_A          212 LCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALGG-GFPV-GALLAT-EECARVMTVGTHGTTYGGNP  286 (406)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSCC-EEEEEC-HHHHHTCCTTSSCCSSTTCH
T ss_pred             HHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--EechhhcC-CCCe-EEEEEc-HHHHhhhccCCcCCCCCCCH
Confidence            478999999999998521      1112233456877  67999994 5444 556554 45555443222222334677


Q ss_pred             HhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH--HHHH
Q 027424           75 FDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSK  150 (223)
Q Consensus        75 ~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~--~~~~  150 (223)
                      ..+..+...++.+  ....++..++...+.+.|++...    .|+...          ...+.|.++.|++.+.  ....
T Consensus       287 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~  352 (406)
T 4adb_A          287 LASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINH----RYGLFS----------EVRGLGLLIGCVLNADYAGQAK  352 (406)
T ss_dssp             HHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH----HHCCEE----------EEEEETTEEEEEECTTTTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----hCCCce----------EEEEEEEEEEEEEeCCcHHHHH
Confidence            7777777777765  44456667777777777765421    011000          0134678899988431  1223


Q ss_pred             HHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          151 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       151 ~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      +|.+.+.--.+.+.-|                           .++.+|++.+.    |+.+.+++.|+++++.
T Consensus       353 ~~~~~l~~~gi~v~~~---------------------------~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~  399 (406)
T 4adb_A          353 QISQEAAKAGVMVLIA---------------------------GGNVVRFAPALNVSEEEVTTGLDRFAAACEH  399 (406)
T ss_dssp             HHHHHHHHTTEECEES---------------------------STTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcEEeec---------------------------CCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            3333332111111111                           15679996553    4567777778777753

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=98.55  E-value=5.5e-07  Score=77.64  Aligned_cols=102  Identities=7%  Similarity=0.048  Sum_probs=66.3

Q ss_pred             ccccCCEEEEecCCCCCCCcCcc----cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhH
Q 027424            2 AHAHGALLLVDNSIMSPVLSRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC   77 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~pl----~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da   77 (223)
                      ++.+| ++|+|++++......++    ..+.++++.|++|.++..+..+ |++++ ++++.+.+......  .+.++...
T Consensus       164 ~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~-~~~~~~~l~~~~~~--~~~~~~~~  238 (335)
T 1uu1_A          164 LKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRV-GYVVA-SEKFIDAYNRVRLP--FNVSYVSQ  238 (335)
T ss_dssp             HHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCC-EEEEE-CHHHHHHHHHHSCT--TCSCHHHH
T ss_pred             HHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCe-EEEEe-CHHHHHHHHHhcCC--CCcCHHHH
Confidence            34558 89999998521111112    2357899999999997556555 45555 45666666544322  24667666


Q ss_pred             HHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcC
Q 027424           78 WICLRGVKT---MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        78 ~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~  108 (223)
                      +.+.+.++.   +..+.++..++...+.+.|+++
T Consensus       239 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  272 (335)
T 1uu1_A          239 MFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            666666654   4455677788888899999876

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=98.55  E-value=2.5e-07  Score=82.07  Aligned_cols=101  Identities=19%  Similarity=0.220  Sum_probs=59.9

Q ss_pred             CccccCCEEEEecCCCCCCCc-------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|++||+|++++ .+..       ......+|++  |++|.+++ +..+| ++++++ ++.+.+...........+
T Consensus       228 l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-GlriG-~~~~~~-~~~~~l~~~~~~~~~~~~  301 (426)
T 1sff_A          228 LCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPLA-GVTGRA-EVMDAVAPGGLGGTYAGN  301 (426)
T ss_dssp             HHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCCE-EEEEEH-HHHTTSCTTSBCCSSSSC
T ss_pred             HHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccccC-CCceE-EEEEcH-HHHhhhccCCcCcCCCCC
Confidence            4789999999999986 3321       1122236765  88999997 65564 455554 454443211111122346


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~  107 (223)
                      |.....+...|+.+..  ..++..++...+.+.|+.
T Consensus       302 ~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~  337 (426)
T 1sff_A          302 PIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLA  337 (426)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            7666667767766532  345556666666666654

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=98.54  E-value=4.5e-07  Score=81.99  Aligned_cols=179  Identities=11%  Similarity=0.054  Sum_probs=100.1

Q ss_pred             CccccCCEEEEecCCCCCCCcC------cc----cCCCc-EEEecccccccCCcccceeEE-Ee--------cCh----h
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR------PL----ELGAD-IVMHSATKFIAGHSDVMAGVL-AV--------KGE----R   56 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~------pl----~~GAD-ivv~S~tK~l~G~~d~~~G~v-~~--------~~~----~   56 (223)
                      +|+++|+++++|+++.....-.      ++    ..+.+ |++.|+||.++..|..+|++. ++        .++    .
T Consensus       230 l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~  309 (448)
T 3meb_A          230 IMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAA  309 (448)
T ss_dssp             HHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHH
T ss_pred             HHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHH
Confidence            4788999999999985432111      11    22444 779999999998888887762 33        233    3


Q ss_pred             HHHHHHHHHHhcCCCCChHhHHHHHhcHHH----------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchH
Q 027424           57 LAKELYFLQNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  126 (223)
Q Consensus        57 ~~~~l~~~~~~~g~~~sp~da~ll~~~l~t----------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~  126 (223)
                      +.+.+....+......+....+.+...|+.          +....++..++...+.+.|++..      .|+........
T Consensus       310 l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~------~~~~~~~~~~~  383 (448)
T 3meb_A          310 MVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK------TPGPGSKGTWD  383 (448)
T ss_dssp             HHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CCCSTTTCCCT
T ss_pred             HHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CCCcCcccccc
Confidence            444444433333333444544444444332          33344666777778888888762      12200000001


Q ss_pred             HHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC--
Q 027424          127 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--  204 (223)
Q Consensus       127 ~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl--  204 (223)
                      ...    ..+|+++|.--+.+.+.++++.-++.-   +          |.+                    .|||++-  
T Consensus       384 ~~~----~~~g~~~~~~~~~~~~~~ll~~~gV~v---~----------~G~--------------------gRis~a~~~  426 (448)
T 3meb_A          384 HIL----TAIGMFTFTGLTPEHVDYLKEKWSIYL---V----------KAG--------------------GRMSMCGLT  426 (448)
T ss_dssp             HHH----HCCSSEEECCCCHHHHHHHHHHHCEEE---C----------SGG--------------------GEEEGGGCC
T ss_pred             eeC----CCceEEEecCCCHHHHHHHHHhCCEEE---e----------CCC--------------------cEEEEecCC
Confidence            111    146777764324455566555544431   1          110                    2999875  


Q ss_pred             -CCHHHHHHHHHHHHhcCC
Q 027424          205 -EDVNDLISDLDKALRTGP  222 (223)
Q Consensus       205 -Ed~~dL~~dl~~Al~~~~  222 (223)
                       |+.+.+++-|.+++++.+
T Consensus       427 ~~~i~~~~~~l~~~l~~~~  445 (448)
T 3meb_A          427 ESNCDYVAEAIHDAVTKLP  445 (448)
T ss_dssp             TTTHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence             568888888888887544

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=98.54  E-value=5.5e-07  Score=79.72  Aligned_cols=109  Identities=11%  Similarity=0.054  Sum_probs=65.8

Q ss_pred             CccccCCEEEEecCCCCCCCc------Ccc-c---CCC----cEEEecccccccCCcccceeEEE-e----cChh----H
Q 027424            1 MAHAHGALLLVDNSIMSPVLS------RPL-E---LGA----DIVMHSATKFIAGHSDVMAGVLA-V----KGER----L   57 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~------~pl-~---~GA----Divv~S~tK~l~G~~d~~~G~v~-~----~~~~----~   57 (223)
                      +|+++|+++|+|++++....-      .|+ .   .+.    +|++.|++|.++.+|..+|.+++ +    ++++    +
T Consensus       204 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l  283 (412)
T 1yaa_A          204 AIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAV  283 (412)
T ss_dssp             HHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHH
T ss_pred             HHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHH
Confidence            378999999999998533221      123 1   244    58899999999877877766541 4    1344    5


Q ss_pred             HHHHHHHHHhcCCCCChHhHHHHHhcHHH----------HHHHHHHHHhHHHHHHHHHhcCC
Q 027424           58 AKELYFLQNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        58 ~~~l~~~~~~~g~~~sp~da~ll~~~l~t----------l~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .+.+.........+.++...+.+.+.|+.          +....++..++...+.+.|++++
T Consensus       284 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1yaa_A          284 TSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG  345 (412)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            55554433332223455555555555543          22334566667778888887754

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=98.51  E-value=2.2e-07  Score=81.87  Aligned_cols=170  Identities=16%  Similarity=0.219  Sum_probs=93.5

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhH-HHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~-~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++...      +.+.......|++  |++|.+++ +-.+ |+++++ +++ .+.+...........+
T Consensus       208 l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~~-G~~~~~-~~~~~~~~~~~~~~~~~~~~  282 (395)
T 3nx3_A          208 LCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGC-GLSV-GAFVIN-QKVASNSLEAGDHGSTYGGN  282 (395)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTT-TSCC-EEEEEC-HHHHHHHSCTTCCSSCBSCC
T ss_pred             HHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccC-CCce-EEEEEc-hhhhhhhcCCcccCCCCCCC
Confidence            478999999999997421      1122233345665  57799986 5544 455554 445 4444322111222457


Q ss_pred             hHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHH
Q 027424           74 PFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  147 (223)
Q Consensus        74 p~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~  147 (223)
                      |..+......++.+.  ...++..++...+.+.|+    .+|.+..+                  ++.|.++.|++.+.+
T Consensus       283 ~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~  344 (395)
T 3nx3_A          283 PLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKR------------------KGLGFMQGLSLDKSV  344 (395)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEECTTS
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EeEEEEEEEEeCCcc
Confidence            777777777777552  223445555555555554    45644332                  235788889884422


Q ss_pred             HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       148 ~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      .+.+|.+.+.-  .+.-+        .|.                 .++.+|||.++    |+.+.+++-|+++++.
T Consensus       345 ~~~~~~~~l~~--~Gi~v--------~~~-----------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          345 KVAKVIQKCQE--NALLL--------ISC-----------------GENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             CHHHHHHHHHH--TTEEC--------EEE-----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHH--CCCEE--------ecC-----------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            34445444321  11110        111                 15789998654    4566677777777653

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=98.51  E-value=1.3e-06  Score=78.20  Aligned_cols=175  Identities=14%  Similarity=0.069  Sum_probs=97.1

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCccc----CCCcEEEecccccccCCcccceeEEEecChhHH-------HHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-------KELYFL   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~-------~~l~~~   64 (223)
                      +|+++|+++|+|++++....     .....    .+.++++.|++|.++..+..+| +++++++.+.       ..+...
T Consensus       237 l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G-~~~~~~~~~~~~~~~~~~~~~~~  315 (449)
T 3qgu_A          237 FARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLG-WTVVPKALKYANGEPVHADWNRV  315 (449)
T ss_dssp             HHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCE-EEECCTTCBCTTSCBHHHHHHHH
T ss_pred             HHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeE-EEecCHHHHhhhhhhHHHHHHHH
Confidence            37899999999999854211     11111    2457999999999985665554 4555543221       123233


Q ss_pred             HHhcCCCCChHhHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeE
Q 027424           65 QNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  139 (223)
Q Consensus        65 ~~~~g~~~sp~da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~  139 (223)
                      ......+.++.........++     .+..+.++..++...+.+.|++.. + ++..|                ..|..+
T Consensus       316 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~----------------~~~~~~  377 (449)
T 3qgu_A          316 MTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG-F-SVYGG----------------DDAPYI  377 (449)
T ss_dssp             HHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-C-CEEES----------------SSSSEE
T ss_pred             hhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-C-eeeCC----------------CCeeEE
Confidence            333222455654444444333     344556777888899999998873 3 23323                124455


Q ss_pred             EEEeC---CHHHHHHHHhhcCcc-eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHH
Q 027424          140 SFLTG---SLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISD  213 (223)
Q Consensus       140 sf~~~---~~~~~~~f~~~l~l~-~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl--Ed~~dL~~d  213 (223)
                      .+.+.   ..+.++++++.-++. ..+..+|.                         ..++.||||+..  |+.+..++.
T Consensus       378 ~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~-------------------------~~~~~iRis~~~~~e~i~~~l~~  432 (449)
T 3qgu_A          378 WVGFPGKPSWDVFAEILERCNIVTTPGSGYGP-------------------------AGEGFVRASAFGSRENILEAVRR  432 (449)
T ss_dssp             EEECTTSCHHHHHHHHHHHHCEECEEGGGGCG-------------------------GGTTEEEEECCSCHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHCCEEEecchHhCC-------------------------CCCCeEEEEecCCHHHHHHHHHH
Confidence            56664   223344555544443 11111110                         025789999765  345556666


Q ss_pred             HHHHHh
Q 027424          214 LDKALR  219 (223)
Q Consensus       214 l~~Al~  219 (223)
                      |+++++
T Consensus       433 l~~~~~  438 (449)
T 3qgu_A          433 FKEAYG  438 (449)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            666665

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=97.90  E-value=1.3e-08  Score=89.79  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc----c--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC-
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL----E--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl----~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g-   69 (223)
                      +|+++|+++|+|++++....    ..++    .  .+.++++.|++|.++..+..+|. ++++++++.+.+.......+ 
T Consensus       192 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~-~~~~~~~~~~~~~~~~~~~~~  270 (392)
T 3b1d_A          192 LCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSY-AIIENPTLCAQFKHQQLVNNH  270 (392)
Confidence            47899999999999854221    1122    1  34569999999999756655554 54555456666554443332 


Q ss_pred             CCCChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhc-CCCe
Q 027424           70 SGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRV  111 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~-~p~v  111 (223)
                      .+.++...+.+...++.    +..+.++..++...+.+.|++ .|.+
T Consensus       271 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  317 (392)
T 3b1d_A          271 HEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRL  317 (392)
Confidence            12345444444455543    233335556777777788877 4554

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=98.50  E-value=2.2e-05  Score=67.27  Aligned_cols=111  Identities=21%  Similarity=0.150  Sum_probs=66.7

Q ss_pred             CccccCCEEEEecCCCCC----CCcCccc----CCCcEEEecccccccCCcccce-eEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSP----VLSRPLE----LGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~----~~~~pl~----~GADivv~S~tK~l~G~~d~~~-G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++++|++++..    ....+..    .++|+++.|++|+ ++   .+| |+++. ++++.+++.......|..
T Consensus       168 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~---~~G~g~~~~-~~~~~~~~~~~~~~~~~~  242 (356)
T 1v72_A          168 VCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GV---LAAEAIVLF-NTSLATEMSYRRKRAGHL  242 (356)
T ss_dssp             HHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TC---SSCEEEEES-SGGGHHHHHHHHHHTTCC
T ss_pred             HHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CC---cCccEEEEE-CHHHHhhHHHHhhccCch
Confidence            478999999999997421    1112222    4799999999999 43   356 56655 556766666554444432


Q ss_pred             CC-h-HhHHHHHhcHH--HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           72 LA-P-FDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        72 ~s-p-~da~ll~~~l~--tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      .+ + ......++.++  .+..+.++..+++..+.+.|++.|++ ++..|
T Consensus       243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~  291 (356)
T 1v72_A          243 SSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGV-EVLGG  291 (356)
T ss_dssp             CSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTE-EEESC
T ss_pred             hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCc-EEccC
Confidence            22 2 11111122221  12334567788889999999988876 34445

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=98.50  E-value=4.6e-07  Score=81.87  Aligned_cols=169  Identities=13%  Similarity=0.205  Sum_probs=96.1

Q ss_pred             CccccCCEEEEecCCCCCCCc-------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++ +++..       .......|++  |++|.++| +..-+|+++++ +++.+.+...........+
T Consensus       252 l~~~~gillI~DEv~-~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~-G~~~~G~v~~~-~~~~~~l~~~~~~~t~~~~  326 (439)
T 2oat_A          252 LCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIV--LLGKALSG-GLYPVSAVLCD-DDIMLTIKPGEHGSTYGGN  326 (439)
T ss_dssp             HHHHTTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEEC-HHHHTTSCTTSSCCSSTTC
T ss_pred             HHHHcCCEEEEeccc-cCCccCCcchhHHHhCCCCcEE--EecccccC-CCCCeEEEEEC-HHHHhccCCCCcccCCCcC
Confidence            478999999999998 43321       2222346876  88999996 42235666665 4554443221111112347


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH--HHH
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALS  149 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~--~~~  149 (223)
                      |..+......++.+..  ..++..++...+.+.|++..      +|..          ...++.|.++.|++.+.  ...
T Consensus       327 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~------~~~~----------~~~~~~g~~~~v~l~~~~~~~~  390 (439)
T 2oat_A          327 PLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP------SDVV----------TAVRGKGLLNAIVIKETKDWDA  390 (439)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSC------TTTE----------EEEEEETTEEEEEECCCSSCCH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc------CCCc----------EEEEeeeeEEEEEEecCccHHH
Confidence            7777777777776642  34666677777777776531      1210          00124678888988421  112


Q ss_pred             HHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          150 KHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       150 ~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      .+|.+.+   +++-             .|.                 .++.+||++++    |+.+.+++.|+++++.
T Consensus       391 ~~l~~~l~~~Gv~v-------------~~~-----------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          391 WKVCLRLRDNGLLA-------------KPT-----------------HGDIIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             HHHHHHHHHTTEEC-------------CBS-----------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCeEE-------------ecC-----------------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence            3343333   2221             110                 24679998874    4567777777777654

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=98.50  E-value=1.7e-06  Score=76.18  Aligned_cols=108  Identities=10%  Similarity=-0.002  Sum_probs=63.9

Q ss_pred             CccccCCEEEEecCCCCCCCcCc------c----cC-CCcEEEecccccccCCcccceeEEEe-cChh----HHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP------L----EL-GADIVMHSATKFIAGHSDVMAGVLAV-KGER----LAKELYFL   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p------l----~~-GADivv~S~tK~l~G~~d~~~G~v~~-~~~~----~~~~l~~~   64 (223)
                      +|+++|+++|+|+++.......+      +    .. .-.|++.|+||.++.+|..+|.+++. .+++    +...+...
T Consensus       203 ~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~  282 (401)
T 7aat_A          203 VVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKIL  282 (401)
T ss_dssp             HHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHH
Confidence            37899999999999864432211      1    11 34589999999999888888776643 2333    33334333


Q ss_pred             HHhcCCCCChHhHHHHHhcH----------HHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           65 QNAEGSGLAPFDCWICLRGV----------KTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        65 ~~~~g~~~sp~da~ll~~~l----------~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      ........+......+.+.+          +.+....++..++...+.+.|+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  336 (401)
T 7aat_A          283 IRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE  336 (401)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33322233344333333333          223333456667778888888875

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=98.49  E-value=7.2e-08  Score=88.01  Aligned_cols=107  Identities=21%  Similarity=0.284  Sum_probs=64.4

Q ss_pred             CccccCCEEEEecCCCCCC--CcCcccCCCcEEEecccccccCC-c--ccceeEEEecChhHHHHHHH-H----------
Q 027424            1 MAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSATKFIAGH-S--DVMAGVLAVKGERLAKELYF-L----------   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~--~~~pl~~GADivv~S~tK~l~G~-~--d~~~G~v~~~~~~~~~~l~~-~----------   64 (223)
                      +||++|+++++|++++.+.  ..+|.++|+|+++.|+||+++++ +  -.-.|++++++ ++.+.+.. .          
T Consensus       228 l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~-~l~~~l~~~~~~~~g~~~~~  306 (474)
T 1wyu_B          228 LCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA-HLAPYLPVPLVERGEEGFYL  306 (474)
T ss_dssp             HHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECG-GGGGGCCSCEEEECSSCEEE
T ss_pred             HHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcH-HHHHhCCCCeeeccCCeeEe
Confidence            4789999999999985443  24566679999999999999854 1  11246666665 34333320 0          


Q ss_pred             --------HHhcCCCCChHh---HHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           65 --------QNAEGSGLAPFD---CWICLR--GVKTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        65 --------~~~~g~~~sp~d---a~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                              .+....+.++..   ++..++  +.+.+..+.++..+++..+.+.|++.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~  363 (474)
T 1wyu_B          307 DFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK  363 (474)
T ss_dssp             ECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                    000001123321   122221  22345555677888999999999886

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=98.49  E-value=8.7e-07  Score=78.60  Aligned_cols=105  Identities=13%  Similarity=0.103  Sum_probs=60.6

Q ss_pred             ccCCEEEEecCCCCCCCc----Cc-cc----CCCc---EEEecccccccCCcccceeEEEe-cChhHHHHHHHHHHhc--
Q 027424            4 AHGALLLVDNSIMSPVLS----RP-LE----LGAD---IVMHSATKFIAGHSDVMAGVLAV-KGERLAKELYFLQNAE--   68 (223)
Q Consensus         4 ~~g~~lvVDnT~~s~~~~----~p-l~----~GAD---ivv~S~tK~l~G~~d~~~G~v~~-~~~~~~~~l~~~~~~~--   68 (223)
                      ++|+++|+|+++......    .+ +.    ...|   |++.|++|.++.++..+|+++.. .++++.+.+.......  
T Consensus       217 ~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~  296 (418)
T 3rq1_A          217 RNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSR  296 (418)
T ss_dssp             SCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            899999999997422110    01 11    1234   88899999998788787765531 3566766665543221  


Q ss_pred             --CCCCChHhHHHHHhcHHH------HH----HHHHHHHhHHHHHHHHHhcC
Q 027424           69 --GSGLAPFDCWICLRGVKT------MA----LRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        69 --g~~~sp~da~ll~~~l~t------l~----~R~~~~~~na~~la~~L~~~  108 (223)
                        ....++.....+...++.      +.    ...++..++...+.+.|++.
T Consensus       297 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (418)
T 3rq1_A          297 ATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV  348 (418)
T ss_dssp             HHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              123455444444444422      11    22245566677777788765

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=98.47  E-value=3.7e-06  Score=75.02  Aligned_cols=179  Identities=11%  Similarity=0.072  Sum_probs=97.2

Q ss_pred             Ccc-ccCCEEEEecCCCC-CCC-----cCcc--------cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH
Q 027424            1 MAH-AHGALLLVDNSIMS-PVL-----SRPL--------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ   65 (223)
Q Consensus         1 ia~-~~g~~lvVDnT~~s-~~~-----~~pl--------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~   65 (223)
                      +|+ ++|+++|+|++++- .+.     ..++        ..+-++++.|++|+ .+.+..+|. ++++ +++.+.+....
T Consensus       207 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~-~~~~-~~l~~~l~~~~  283 (422)
T 3d6k_A          207 MSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSF-FASS-KENIEWYASHA  283 (422)
T ss_dssp             CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEE-EECC-HHHHHHHHHHH
T ss_pred             HHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEE-EEeC-HHHHHHHHHHH
Confidence            477 89999999999862 221     1133        23567999999998 666666654 5444 66777776665


Q ss_pred             HhcCCCCChHhHHHHHhcHHH---HHHH----HHHHHhHHHHHHHHHhc----CCCeeEEEcCCCCCCcchHHHHhhhCC
Q 027424           66 NAEGSGLAPFDCWICLRGVKT---MALR----VEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKG  134 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l~t---l~~R----~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g  134 (223)
                      .....+.++...+.+...++.   +...    .+...++...+.+.|++    .+.+ ++..|                .
T Consensus       284 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~-~~~~p----------------~  346 (422)
T 3d6k_A          284 NVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVA-KWTSP----------------T  346 (422)
T ss_dssp             HHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCE-EECCC----------------S
T ss_pred             HhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCce-EEeCC----------------C
Confidence            554445666655555444432   1122    23334455566666654    3323 33344                1


Q ss_pred             CCeeEEEEeC--CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC---CCHHH
Q 027424          135 AGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVND  209 (223)
Q Consensus       135 ~ggl~sf~~~--~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl---Ed~~d  209 (223)
                      .|..+.+++.  +.+...+.+..-++.   +.-|+..    .+.. .+            -.++.+|||++.   |+.+.
T Consensus       347 ~g~~~~~~~~~~~~~~~~~~l~~~gV~---v~~~g~~----f~~~-~~------------~~~~~iRis~~~~~~e~i~~  406 (422)
T 3d6k_A          347 GGYFISVDVVPGTASRVVELAKEAGIA---LTGAGSS----FPLH-ND------------PNNENIRLAPSLPPVAELEV  406 (422)
T ss_dssp             BSSCEEEEESTTCHHHHHHHHHHTTEE---CCCTTTT----SGGG-CC------------TTSCEEEECCSSSCHHHHHH
T ss_pred             cceEEEEECCCCCHHHHHHHHHHCCeE---EEcCccc----cCCC-CC------------CCCCeEEEecCCCCHHHHHH
Confidence            2445666774  233333444443332   2221110    0000 00            035789999994   45666


Q ss_pred             HHHHHHHHHh
Q 027424          210 LISDLDKALR  219 (223)
Q Consensus       210 L~~dl~~Al~  219 (223)
                      +++-|+++++
T Consensus       407 ~~~~l~~~l~  416 (422)
T 3d6k_A          407 AMDGFATCVL  416 (422)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777765

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=98.46  E-value=6.1e-07  Score=82.15  Aligned_cols=177  Identities=15%  Similarity=0.220  Sum_probs=102.9

Q ss_pred             CccccCCEEEEecCCCCCCCcC----cccC---CCcEEEecccccccCCcccceeEEEecChhH-HHHHHHHHHhc----
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PLEL---GADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNAE----   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl~~---GADivv~S~tK~l~G~~d~~~G~v~~~~~~~-~~~l~~~~~~~----   68 (223)
                      +||++|++++||.+++......    .+..   ++|.++-|.||+++++-  -+|++.++++.. .+.+.....++    
T Consensus       259 la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~--g~g~l~~~~~~~l~~~~~~~~~yl~~~~  336 (475)
T 3k40_A          259 VGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF--DCSAMWLKDPSWVVNAFNVDPLYLKHDM  336 (475)
T ss_dssp             HHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESSGGGC---------------
T ss_pred             HHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC--ceEEEEEeCHHHHHHHhcCCccccCCCc
Confidence            4789999999999997753322    2222   47999999999998763  345566666543 22211110000    


Q ss_pred             -C---------CCCC----hHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           69 -G---------SGLA----PFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        69 -g---------~~~s----p~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                       +         ...+    ....|..++  +.+.+..++++..+++..+++.|++.|.++ +..|     |         
T Consensus       337 ~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~-l~~~-----~---------  401 (475)
T 3k40_A          337 QGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFE-LAAE-----I---------  401 (475)
T ss_dssp             ------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEE-ESSC-----C---------
T ss_pred             CCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEE-EecC-----C---------
Confidence             0         0011    122333333  344567788999999999999999999873 4333     1         


Q ss_pred             CCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-----CC
Q 027424          133 KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-----ED  206 (223)
Q Consensus       133 ~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-----Ed  206 (223)
                        ..++++|.+ +......++.+++.-  .    |.   ++..|.  .+          .  ....+|++++-     ||
T Consensus       402 --~~~iv~f~~~~~~~~~~~l~~~L~~--~----g~---~~~~~~--~~----------~--g~~~lR~~~~~~~tt~~d  456 (475)
T 3k40_A          402 --NMGLVCFRLKGSNERNEALLKRING--R----GH---IHLVPA--KI----------K--DVYFLRMAICSRFTQSED  456 (475)
T ss_dssp             --BTTEEEEEESSCHHHHHHHHHHHHH--H----TS---CBCEEE--EE----------T--TEEEEEEECCCTTCCHHH
T ss_pred             --ceEEEEEEeCCchHHHHHHHHHHHh--C----Cc---EEEEee--EE----------C--CEEEEEEEeCCCCCCHHH
Confidence              357899988 444445566555421  1    10   001111  11          0  24689999862     46


Q ss_pred             HHHHHHHHHHHHh
Q 027424          207 VNDLISDLDKALR  219 (223)
Q Consensus       207 ~~dL~~dl~~Al~  219 (223)
                      ++.+++.|++.++
T Consensus       457 i~~~~~~i~~~~~  469 (475)
T 3k40_A          457 MEYSWKEVSAAAD  469 (475)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7778888877765

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=98.46  E-value=2.1e-06  Score=76.50  Aligned_cols=108  Identities=10%  Similarity=-0.022  Sum_probs=64.4

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Ccc-----cCCCcEEEecccccccCCcccceeEEE-ecChhHHHHH----HHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPL-----ELGADIVMHSATKFIAGHSDVMAGVLA-VKGERLAKEL----YFLQ   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl-----~~GADivv~S~tK~l~G~~d~~~G~v~-~~~~~~~~~l----~~~~   65 (223)
                      +|+++|+++|+|++++....-     .++     ..+-+|++.|++|.++..|..+|.+++ ..++++.+++    +...
T Consensus       223 ~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~  302 (420)
T 4f4e_A          223 VVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVI  302 (420)
T ss_dssp             HHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             HHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHH
Confidence            378899999999998433221     111     134569999999999877888877653 3344444332    2222


Q ss_pred             HhcCCCCChHhHHHHHhcHHH----------HHHHHHHHHhHHHHHHHHHhcC
Q 027424           66 NAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l~t----------l~~R~~~~~~na~~la~~L~~~  108 (223)
                      +......++...+.+...++.          +..+.++..++...+.+.|++.
T Consensus       303 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          303 RTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             HTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222223344444444433332          3344466677788888888876

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=98.46  E-value=1.9e-07  Score=82.34  Aligned_cols=168  Identities=15%  Similarity=0.217  Sum_probs=96.4

Q ss_pred             CccccCCEEEEecCCCCCCCc--Ccc---cCC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS--RPL---ELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~--~pl---~~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|++++ ++..  ++.   .+|  +|++  |++|++++ +..+|+ ++++++ +. .+...........+
T Consensus       212 l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~r~G~-~~~~~~-~~-~l~~~~~~~~~~~~  284 (397)
T 2ord_A          212 LCDEYDALLVFDEVQC-GMGRTGKLFAYQKYGVVPDVL--TTAKGLGG-GVPIGA-VIVNER-AN-VLEPGDHGTTFGGN  284 (397)
T ss_dssp             HHHHHTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSCCEE-EEECST-TC-CCCTTSSCCSSTTC
T ss_pred             HHHHcCCEEEEEeccc-CCccCccchhhhhhCCCCCee--eeccccCC-CcCeEE-EEEchH-hc-ccCCCCcCCCCCCC
Confidence            4789999999999995 4422  121   224  7876  77899995 455655 545654 43 33211111222457


Q ss_pred             hHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhcC----CCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHH
Q 027424           74 PFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  147 (223)
Q Consensus        74 p~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~~----p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~  147 (223)
                      |..++.+...|+.+.  ...++..++...+.+.|++.    |.+..                  ..+.|.++.|++.+..
T Consensus       285 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~  346 (397)
T 2ord_A          285 PLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVAD------------------VRGMGLMIGIQFREEV  346 (397)
T ss_dssp             HHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE------------------EEEETTEEEEEECTTS
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCceEE------------------EEEEeEEEEEEECChH
Confidence            777777777777663  23466667777777777653    32211                  1225788889884321


Q ss_pred             HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhc
Q 027424          148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  220 (223)
Q Consensus       148 ~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al~~  220 (223)
                      ...+|.+.|.--.+.+          .|.                 .++.+|||++    .|+.+.+++.|+++++.
T Consensus       347 ~~~~l~~~l~~~gi~v----------~~~-----------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          347 SNREVATKCFENKLLV----------VPA-----------------GNNTIRFLPPLTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             CHHHHHHHHHHTTEEC----------EEE-----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEE----------ccC-----------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence            2333444332111111          111                 1467999944    45678888888888764

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=98.45  E-value=5.5e-07  Score=87.10  Aligned_cols=106  Identities=16%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccC---CCc----EEEecccccccCCcccceeEEEecChhH--------H
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLEL---GAD----IVMHSATKFIAGHSDVMAGVLAVKGERL--------A   58 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~---GAD----ivv~S~tK~l~G~~d~~~G~v~~~~~~~--------~   58 (223)
                      +||++|++|+||++|+.++.       ..++..   |+|    ++++|+||+++|+  .+||+++++++.+        .
T Consensus       305 la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~--~~gg~I~v~~~~l~g~~~~i~~  382 (730)
T 1c4k_A          305 RIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF--SQTSQIHKKDSHIKGQLRYCDH  382 (730)
T ss_dssp             HHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC--TTCEEEEEECGGGTTSTTCCCH
T ss_pred             HHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCC--CCEEEEEecchhhcCcccccCH
Confidence            47999999999999976432       235654   999    9999999999966  4778886665543        1


Q ss_pred             HHHHHHHHhcCCCCChHhHHHHHhcHHH---------HHHHHHHHHhHHHHHHHHHhc-CCCe
Q 027424           59 KELYFLQNAEGSGLAPFDCWICLRGVKT---------MALRVEKQQDNAQKIAEFLAS-HPRV  111 (223)
Q Consensus        59 ~~l~~~~~~~g~~~sp~da~ll~~~l~t---------l~~R~~~~~~na~~la~~L~~-~p~v  111 (223)
                      .++.......+. .+|  .+.++.+++.         -..++++..+++..+.+.|++ .+++
T Consensus       383 ~~~~~~~~~~~s-tsp--~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~  442 (730)
T 1c4k_A          383 KHFNNSFNLFMS-TSP--FYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMF  442 (730)
T ss_dssp             HHHHHHHHHHSC-SSC--CHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHhCC-CCC--cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCe
Confidence            233333333332 234  2333333332         245678899999999999988 5765

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=98.42  E-value=4.7e-07  Score=81.56  Aligned_cols=167  Identities=11%  Similarity=0.166  Sum_probs=94.5

Q ss_pred             CccccCCEEEEecCCCCCCCc-------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|++||+|+++. ++..       .......|++  |++|.++| +..-.|+++++ +++.+.+...........+
T Consensus       241 l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~~G~v~~~-~~~~~~l~~~~~~~t~~~~  315 (433)
T 1z7d_A          241 ICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSG-GHYPISAVLAN-DDIMLVIKPGEHGSTYGGN  315 (433)
T ss_dssp             HHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEEC-HHHHTTCCTTCCCCTTTTC
T ss_pred             HHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccC-CCCCeEEEEEC-HHHHhhhccccccccCCCC
Confidence            4789999999999984 3321       2223357876  88899995 42224556555 4554433211011112346


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc----CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH-
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-  146 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~-  146 (223)
                      |..+......|+.+..  ..++..++...+.+.|++    +|.+..+                  ++.|.++.|++... 
T Consensus       316 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~------------------~~~g~~~~i~~~~~~  377 (433)
T 1z7d_A          316 PLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDV------------------RGKGLLCAIEFKNEL  377 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE------------------EEETTEEEEEECTTT
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EeeeeEEEEEEccCh
Confidence            7777777777776642  245555666666666653    3432221                  23678899988432 


Q ss_pred             HHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 027424          147 ALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  219 (223)
Q Consensus       147 ~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~  219 (223)
                      ....+|.+.+   +++-             .|.                 .++.+|+++++    |+.+.+++-|+++++
T Consensus       378 ~~~~~~~~~l~~~Gv~v-------------~~~-----------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  427 (433)
T 1z7d_A          378 VNVLDICLKLKENGLIT-------------RDV-----------------HDKTIRLTPPLCITKEQLDECTEIIVKTVK  427 (433)
T ss_dssp             CCHHHHHHHHHHTTEEC-------------CEE-----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCeEE-------------ecC-----------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence            1123343333   2220             111                 24679998775    456777777777765


Q ss_pred             c
Q 027424          220 T  220 (223)
Q Consensus       220 ~  220 (223)
                      .
T Consensus       428 ~  428 (433)
T 1z7d_A          428 F  428 (433)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=98.41  E-value=7.7e-07  Score=81.45  Aligned_cols=177  Identities=18%  Similarity=0.256  Sum_probs=104.8

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccCC---CcEEEecccccccCCcccceeEEEecChhHHHH-HHHHHHhc----
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLELG---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAE----   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~G---ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~-l~~~~~~~----   68 (223)
                      +|+++|+++.||.+++....    .+.+..|   ||.++-+.||+++++-  -+|++.++++....+ +.....+.    
T Consensus       266 la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~--g~g~l~~~~~~~l~~~~~~~~~yl~~~~  343 (481)
T 4e1o_A          266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF--DCTGFWVKDKYKLQQTFSVNPIYLRHAN  343 (481)
T ss_dssp             HHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESBHHHHHTTTCCCCGGGCCTT
T ss_pred             HHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC--ceEEEEEeCHHHHHHHhcCCchhccCcc
Confidence            47899999999999976532    2222234   5999999999999763  345566676543221 10000010    


Q ss_pred             -C-----------CC--CChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           69 -G-----------SG--LAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        69 -g-----------~~--~sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                       +           .+  ......|..++  +.+.+..++++..+++..+++.|++.|.++ +..|     |         
T Consensus       344 ~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~-~~~~-----~---------  408 (481)
T 4e1o_A          344 SGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFE-IPAK-----R---------  408 (481)
T ss_dssp             TTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEE-CCSC-----C---------
T ss_pred             cCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE-EecC-----C---------
Confidence             0           00  11223344444  445577888999999999999999998864 3322     1         


Q ss_pred             CCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC-----CC
Q 027424          133 KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-----ED  206 (223)
Q Consensus       133 ~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-----Ed  206 (223)
                        ..++++|.+ +......++.+++.-  .    |.   .+..|..  +          .  ....+|++++-     ||
T Consensus       409 --~~~~v~f~~~~~~~~~~~l~~~L~~--~----g~---~~~~~~~--~----------~--g~~~lR~~~~~~~tt~~d  463 (481)
T 4e1o_A          409 --HLGLVVFRLKGPNSLTENVLKEIAK--A----GR---LFLIPAT--I----------Q--DKLIIRFTVTSQFTTRDD  463 (481)
T ss_dssp             --CSSEEEEEESSCHHHHHHHHHHHHH--H----CS---SBCEEEE--E----------T--TEEEEEEECCCTTCCHHH
T ss_pred             --ceeEEEEEeCCchHHHHHHHHHHHh--C----Ce---EEEEeeE--E----------C--CEEEEEEEeCCCCCCHHH
Confidence              357889988 444445556555421  0    00   0001111  0          0  23579999873     46


Q ss_pred             HHHHHHHHHHHHh
Q 027424          207 VNDLISDLDKALR  219 (223)
Q Consensus       207 ~~dL~~dl~~Al~  219 (223)
                      ++.+++.|++.++
T Consensus       464 i~~~~~~i~~~~~  476 (481)
T 4e1o_A          464 ILRDWNLIRDAAT  476 (481)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777665

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=98.35  E-value=7.5e-07  Score=80.15  Aligned_cols=107  Identities=17%  Similarity=0.154  Sum_probs=63.9

Q ss_pred             CccccCCEEEEecCCCC-----------CC-CcCccc------CCCcEEEecccccccCCcccceeEEEecCh-hHHHHH
Q 027424            1 MAHAHGALLLVDNSIMS-----------PV-LSRPLE------LGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-----------~~-~~~pl~------~GADivv~S~tK~l~G~~d~~~G~v~~~~~-~~~~~l   61 (223)
                      +|++||++||+|++.+.           .+ ...+.+      .++|+++.|++|.++..   +||+++.+++ ++.+++
T Consensus       212 la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~  288 (467)
T 1ax4_A          212 IAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLA  288 (467)
T ss_dssp             HHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHH
T ss_pred             HHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHH
Confidence            47899999999997432           11 112222      24899999999998643   6787876645 666665


Q ss_pred             HHHHHhcCC-----CCChHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhcCCCe
Q 027424           62 YFLQNAEGS-----GLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        62 ~~~~~~~g~-----~~sp~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      .......+.     ..+......+..+++...  .++++..+++..+.+.|++ +.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~  344 (467)
T 1ax4_A          289 RQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE-AGI  344 (467)
T ss_dssp             HHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred             HhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh-CCC
Confidence            544332111     112211121222454432  2566667888899999987 443

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=98.33  E-value=2.8e-06  Score=74.42  Aligned_cols=109  Identities=13%  Similarity=0.019  Sum_probs=63.4

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Cccc----CC-CcEEEecccccccCCcccceeEEE-ecCh----hHHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPLE----LG-ADIVMHSATKFIAGHSDVMAGVLA-VKGE----RLAKELYFLQ   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl~----~G-ADivv~S~tK~l~G~~d~~~G~v~-~~~~----~~~~~l~~~~   65 (223)
                      +|+++|+++|+|++++....-     .++.    .+ -++++.|++|.++..|..+|.++. ..++    ++.+.+....
T Consensus       200 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~  279 (396)
T 2q7w_A          200 LSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAI  279 (396)
T ss_dssp             HHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHH
Confidence            368899999999998643221     1222    12 358899999999866766666543 2233    3333343322


Q ss_pred             HhcCCCCChHhHHHHHhcHHH----------HHHHHHHHHhHHHHHHHHHhcCC
Q 027424           66 NAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l~t----------l~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .....+.++...+.+...|+.          +....++..++...+.+.|++.+
T Consensus       280 ~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  333 (396)
T 2q7w_A          280 RANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             HTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             hhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            222223466656555555532          22223555677777888888764

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=98.29  E-value=3.3e-06  Score=74.58  Aligned_cols=107  Identities=13%  Similarity=0.059  Sum_probs=63.3

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCcccCC--C--cEEEecccccccCCcccceeEEEecChhH------HHHHHH-H
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLELG--A--DIVMHSATKFIAGHSDVMAGVLAVKGERL------AKELYF-L   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~~G--A--Divv~S~tK~l~G~~d~~~G~v~~~~~~~------~~~l~~-~   64 (223)
                      +|+++|+++|+|++++...     ......+.  .  ++++.|++|.++..|..+|. ++++++..      .+.+.. .
T Consensus       191 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~-~~~~~~~~~~~~~~~~~~~~~~  269 (400)
T 3asa_A          191 YAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGW-TVIPQELTYADGHFVIQDWERF  269 (400)
T ss_dssp             HHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEE-EECCTTCBCTTSCBHHHHHHHH
T ss_pred             HHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeE-EeeChhhccchhhhHHHHHHHH
Confidence            3688999999999986321     11222222  3  48899999999766666655 55555331      343332 1


Q ss_pred             HHhcCCCCChHhHHHHHhcHHH--HHHHHHHHHhHHHHHHHHHhcC
Q 027424           65 QNAEGSGLAPFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        65 ~~~~g~~~sp~da~ll~~~l~t--l~~R~~~~~~na~~la~~L~~~  108 (223)
                      ......+.++.....+...++.  +....++..++...+.+.|++.
T Consensus       270 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  315 (400)
T 3asa_A          270 LSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT  315 (400)
T ss_dssp             HHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            2222223566555555555554  2333466667788888889876

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=98.28  E-value=2.4e-06  Score=82.87  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=70.8

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCC--CcE------EEecccccccCCcccceeEEEecCh--hH-HHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELG--ADI------VMHSATKFIAGHSDVMAGVLAVKGE--RL-AKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~G--ADi------vv~S~tK~l~G~~d~~~G~v~~~~~--~~-~~~l~   62 (223)
                      +||++|++|+||++|+..+.       ..|+ .|  +|+      +++|+||+++|+  .++|+++++++  .+ ..++.
T Consensus       336 ia~~~~~~livDeA~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~--~~g~~i~~~~~~~~i~~~~~~  412 (755)
T 2vyc_A          336 LLEKTSDRLHFDEAWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNAL--SQASYIHVREGRGAINFSRFN  412 (755)
T ss_dssp             HHTTTCSEEEEECTTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCC--TTCEEEEEECCBTCCCHHHHH
T ss_pred             HHHHcCCEEEEECcCchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccccCc--CCeeeeeecCcccccCHHHHH
Confidence            48999999999999976432       2455 78  897      999999999976  47888877664  22 23333


Q ss_pred             HHHHhcCCCCChHhHHHHHhcHHH---------HHHHHHHHHhHHHHHHHHHhcCCC
Q 027424           63 FLQNAEGSGLAPFDCWICLRGVKT---------MALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        63 ~~~~~~g~~~sp~da~ll~~~l~t---------l~~R~~~~~~na~~la~~L~~~p~  110 (223)
                      ......+ +.+|  .++++.+++.         ...++++..+++..+.+.|++.+.
T Consensus       413 ~~~~~~~-s~sp--~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          413 QAYMMHA-TTSP--LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             HHHHHTS-CSSC--CHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC-CCCH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3333333 2344  3444454443         234678889999999999987654

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=98.27  E-value=6.6e-06  Score=72.02  Aligned_cols=109  Identities=12%  Similarity=0.076  Sum_probs=63.0

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Ccc-----cCCCcEEEecccccccCCcccceeEEEe-cChhHHHHHHH-HH---
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPL-----ELGADIVMHSATKFIAGHSDVMAGVLAV-KGERLAKELYF-LQ---   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl-----~~GADivv~S~tK~l~G~~d~~~G~v~~-~~~~~~~~l~~-~~---   65 (223)
                      +|+++|+++|+|++++....-     .++     ..+-.|++.|++|.++-.|..+|.+++. .+.++.+++.. ..   
T Consensus       201 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~  280 (397)
T 3fsl_A          201 ILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATV  280 (397)
T ss_dssp             HHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHH
Confidence            378899999999998543221     111     1234599999999998667777776542 33444433321 11   


Q ss_pred             HhcCCCCChHhHHHHHhcH----------HHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           66 NAEGSGLAPFDCWICLRGV----------KTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l----------~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .......++.....+...+          +.+..+.++..++...+.+.|++++
T Consensus       281 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  334 (397)
T 3fsl_A          281 RRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEM  334 (397)
T ss_dssp             HTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            1122222333333332222          2244555777888888889998764

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=98.25  E-value=2.5e-06  Score=76.32  Aligned_cols=172  Identities=13%  Similarity=0.160  Sum_probs=94.9

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|++||+|++++..      +.........|++  |++|.+++ +..+ |+++.+ +++.+.+......... .+|
T Consensus       230 l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~ri-G~~~~~-~~~~~~~~~~~~~~t~-~~~  303 (439)
T 3dxv_A          230 ICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GLPL-SAVIAP-AEILDCASAFAMQTLH-GNP  303 (439)
T ss_dssp             HHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSCC-EEEEEE-HHHHTSCSSSSCCTTT-TCH
T ss_pred             HHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-Ccce-EEEEEC-HHHHhhhcCCCcCCCc-ccH
Confidence            478999999999998621      1112222346776  89999996 6555 556554 4554433221111122 466


Q ss_pred             HhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhc----CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-----
Q 027424           75 FDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-----  143 (223)
Q Consensus        75 ~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-----  143 (223)
                      ..+...+..++.+.  ...++..++...+.+.|++    +|.+..+                  .+.|.++.|++     
T Consensus       304 ~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~  365 (439)
T 3dxv_A          304 ISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI------------------RGRGLACGMELVCDRQ  365 (439)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEEecCcc
Confidence            66666666666542  2245555666666555553    5654332                  23577888877     


Q ss_pred             ---CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHH
Q 027424          144 ---GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDK  216 (223)
Q Consensus       144 ---~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~  216 (223)
                         .....+.+|.+.+.-  .++-+        .|.               |..++.+||+..+    |+.+.+++.|++
T Consensus       366 ~~~~~~~~~~~~~~~l~~--~Gv~v--------~~~---------------~~~~~~iRi~~~~~~t~e~i~~~l~~l~~  420 (439)
T 3dxv_A          366 SREPARAETAKLIYRAYQ--LGLVV--------YYV---------------GMNGNVLEFTPPLTITETDIHKALDLLDR  420 (439)
T ss_dssp             TTEECHHHHHHHHHHHHH--HTEEC--------EEE---------------STTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHH--CCcEE--------eec---------------CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence               233445555544321  11111        111               1124779998654    456777788888


Q ss_pred             HHhcC
Q 027424          217 ALRTG  221 (223)
Q Consensus       217 Al~~~  221 (223)
                      +++..
T Consensus       421 ~l~~~  425 (439)
T 3dxv_A          421 AFSEL  425 (439)
T ss_dssp             HHHTG
T ss_pred             HHHHH
Confidence            77643

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=98.23  E-value=4e-06  Score=75.39  Aligned_cols=107  Identities=18%  Similarity=0.033  Sum_probs=60.7

Q ss_pred             CccccCCEEEEecCCCC------------CCCcCccc------CCCcEEEecccccccCCcccceeEEEecCh---hHHH
Q 027424            1 MAHAHGALLLVDNSIMS------------PVLSRPLE------LGADIVMHSATKFIAGHSDVMAGVLAVKGE---RLAK   59 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------------~~~~~pl~------~GADivv~S~tK~l~G~~d~~~G~v~~~~~---~~~~   59 (223)
                      +|++||++|++|.+.+.            .....+..      .++|+++.|++|.++..   +||+++.+++   +...
T Consensus       212 la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~~~~~~~~~~  288 (467)
T 2oqx_A          212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYT  288 (467)
T ss_dssp             HHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHH
T ss_pred             HHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceEEEecChhHHHHHH
Confidence            47999999999954322            11122222      35899999999999753   5787776655   2333


Q ss_pred             HHHHHHHhcC-C----CCChHhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           60 ELYFLQNAEG-S----GLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        60 ~l~~~~~~~g-~----~~sp~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      +++......+ .    ..+......+..+++..  ..++++..+++..+.+.|++. ++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~  346 (467)
T 2oqx_A          289 ECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GV  346 (467)
T ss_dssp             HHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            3333221111 1    11221111122233332  235667778899999999887 44

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=98.21  E-value=5.6e-06  Score=72.55  Aligned_cols=108  Identities=15%  Similarity=0.002  Sum_probs=60.7

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Cccc----CCC-cEEEecccccccCCcccceeEEEe-cChhHHHH----HHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPLE----LGA-DIVMHSATKFIAGHSDVMAGVLAV-KGERLAKE----LYFLQ   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl~----~GA-Divv~S~tK~l~G~~d~~~G~v~~-~~~~~~~~----l~~~~   65 (223)
                      +|+++|+++|+|++++....-     .++.    .+. .+++.|++|.++-.|..+|.++.. .++++.+.    +....
T Consensus       197 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~  276 (394)
T 2ay1_A          197 ILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLN  276 (394)
T ss_dssp             HHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHH
Confidence            378899999999998643221     1222    243 377999999997566666554431 23443332    22222


Q ss_pred             HhcCCCCChHhHHHHHhcHHH----------HHHHHHHHHhHHHHHHHHHhcC
Q 027424           66 NAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l~t----------l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .....+.++...+.+.+.|+.          +....++..++...+.+.|++.
T Consensus       277 ~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (394)
T 2ay1_A          277 RQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL  329 (394)
T ss_dssp             HTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222222356555555555542          2233355566667777777765

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=98.20  E-value=3.8e-06  Score=75.97  Aligned_cols=172  Identities=17%  Similarity=0.266  Sum_probs=94.6

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|++||++||+|+.+...      +.+.......|++  |++|.+++ +-.+|+ ++++ +++.+.+...........+|
T Consensus       256 l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G~~iG~-v~~~-~~~~~~~~~~~~~~t~~~~~  330 (451)
T 3oks_A          256 WCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-GLPLSA-VTGR-AEIMDSPHVSGLGGTYGGNP  330 (451)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCEE-EEEE-HHHHTCSCTTSBCCSSSSCH
T ss_pred             HHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-CcceEE-EEEC-HHHHhhhcCCCcCCCCCCCH
Confidence            478999999999997421      1112222335766  78899987 666665 5454 45544433211112223577


Q ss_pred             HhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC----
Q 027424           75 FDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----  144 (223)
Q Consensus        75 ~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~----  144 (223)
                      ..+...+..|+.+..  ..++..++...+.+.|+    .+|.+..|                  ++.|.++.|++.    
T Consensus       331 ~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~G~~~~~~~~~~~~  392 (451)
T 3oks_A          331 IACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDV------------------RGRGAMIAMELVKAGT  392 (451)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEBSTTS
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE------------------EEeeEEEEEEEecCcc
Confidence            777777777775432  23444555555555444    56655433                  236788889872    


Q ss_pred             ---CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHH
Q 027424          145 ---SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  217 (223)
Q Consensus       145 ---~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~A  217 (223)
                         +...+.+|.+.+.  ..++-+        .|.               |...+.+||+..+    |+.+.+++-|+++
T Consensus       393 ~~~~~~~~~~~~~~l~--~~Gv~v--------~~~---------------~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~  447 (451)
T 3oks_A          393 TEPDADLTKALCAGAH--AAGVIV--------LSC---------------GTYGNVVRFLPPLSIGDDLLNEGLDVLEEV  447 (451)
T ss_dssp             CCBCHHHHHHHHHHHH--HTTEEC--------EEE---------------CTTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH--hCCcEE--------ecC---------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence               2334455554431  111110        111               0113579997654    4566677777777


Q ss_pred             Hhc
Q 027424          218 LRT  220 (223)
Q Consensus       218 l~~  220 (223)
                      |+.
T Consensus       448 l~~  450 (451)
T 3oks_A          448 LRG  450 (451)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            754

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=98.13  E-value=4.6e-06  Score=80.45  Aligned_cols=101  Identities=14%  Similarity=0.099  Sum_probs=67.8

Q ss_pred             ccccCCEEEEecCCCCCCC-------cCcccCC--CcEE---EecccccccCCcccceeEEEecChhHHHHHHHHHHhcC
Q 027424            2 AHAHGALLLVDNSIMSPVL-------SRPLELG--ADIV---MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG   69 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~-------~~pl~~G--ADiv---v~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g   69 (223)
                      |++++  ++||++|++++.       ..++..|  +|++   ++|+||+++|  .+++|+++++++...+++.......+
T Consensus       322 a~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g--ltqgs~i~v~~~i~~~~~~~~~~~~~  397 (715)
T 3n75_A          322 LDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA--FSQASMIHVKGDVNEETFNEAYMMHT  397 (715)
T ss_dssp             CCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC--CTTCEEEEEESCCCHHHHHHHHHHTS
T ss_pred             hCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccC--CCCeeEEEeCchhhHHHHHHHHHhhc
Confidence            44443  799999987642       2355555  7877   9999999994  46899998876533344555555555


Q ss_pred             CCCChHhHHHHHhcHHHH---------HHHHHHHHhHHHHHHHHHhcCC
Q 027424           70 SGLAPFDCWICLRGVKTM---------ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---------~~R~~~~~~na~~la~~L~~~p  109 (223)
                       +.||  .|+++.+++..         ..++++..+++..+.+.|++.+
T Consensus       398 -STSp--sy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~  443 (715)
T 3n75_A          398 -TTSP--HYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLR  443 (715)
T ss_dssp             -CSSC--CHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCc--hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence             3455  55666666532         2345777888888888887654

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=98.12  E-value=9.3e-06  Score=71.72  Aligned_cols=105  Identities=15%  Similarity=0.133  Sum_probs=71.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCcc---c-CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcC-------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPL---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-------   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl---~-~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g-------   69 (223)
                      +|+++|+++|+|++++.+..+...   . .++|+..-|.+|.++|..   +|+++++++++.+++........       
T Consensus       144 l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~---~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~  220 (394)
T 1o69_A          144 ICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYE  220 (394)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCC
T ss_pred             HHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCC---ceEEEECCHHHHHHHHHHHHhccccCcccc
Confidence            478999999999999744322211   1 135666666699998653   77787766677666655422110       


Q ss_pred             CC-------CChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           70 SG-------LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        70 ~~-------~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      ..       +++..+.+.+..++.+..++++..+++..+.+.|++.
T Consensus       221 ~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~  266 (394)
T 1o69_A          221 HLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY  266 (394)
T ss_dssp             CSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            00       4556666666567778888899999999999999886

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=98.12  E-value=3.6e-05  Score=68.52  Aligned_cols=177  Identities=15%  Similarity=0.175  Sum_probs=91.2

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcc-cCCCcEEEecccccccCCc-ccceeEEEecChhHHHHHHHH----HHhc
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPL-ELGADIVMHSATKFIAGHS-DVMAGVLAVKGERLAKELYFL----QNAE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl-~~GADivv~S~tK~l~G~~-d~~~G~v~~~~~~~~~~l~~~----~~~~   68 (223)
                      +|+++|++||+|+++..-      +..... ....|++  +++|.+++ + -.+|+ ++. ++++.+.+...    ....
T Consensus       220 l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~sK~l~~-G~~r~G~-~~~-~~~i~~~~~~~~~~~~~~~  294 (430)
T 3i4j_A          220 ICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLGKGLAA-GYAPLAG-LLA-APQVYETVMGGSGAFMHGF  294 (430)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EECGGGTT-TSSCCEE-EEE-CHHHHHHHHHTTCBCCCCC
T ss_pred             HHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEE--EEcccccC-CccccEE-EEE-CHHHHHHHhccCCcccccC
Confidence            478999999999997421      111111 2235666  57799986 5 55654 545 45666655432    1111


Q ss_pred             CCCCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           69 GSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      ....+|..+...+..|+.+..  ..++..++...+.+.|+    ++|.+..+.                  +.|.++.|+
T Consensus       295 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~g~~~~~~  356 (430)
T 3i4j_A          295 TYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVR------------------GTGLLLGVV  356 (430)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE------------------EETTEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE------------------EEEEEEEEE
Confidence            123467666666667765422  23455555555555544    566654332                  257788888


Q ss_pred             eCCH---------HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHH
Q 027424          143 TGSL---------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVND  209 (223)
Q Consensus       143 ~~~~---------~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~d  209 (223)
                      +.+.         +.+.+|.+.+.  ..++-        ..|....          ..|..++.+||+++    -|+.+.
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~l~--~~Gv~--------v~~~~~~----------~~~~~~~~iRi~~~~~~t~e~i~~  416 (430)
T 3i4j_A          357 LGDLATGQAFETPGIASRIGAAAL--KRGLI--------TYPGSGA----------EPNGRGDHLLLGPPLSITAAEVDG  416 (430)
T ss_dssp             EC------------CHHHHHHHHH--HTTEE--------CC---------------------CEEEECCCTTCCHHHHHH
T ss_pred             eccccccCCCccHHHHHHHHHHHH--hCCCE--------EEecccc----------cCCCCCCEEEEECCCCCCHHHHHH
Confidence            7421         11233433331  11111        1111000          00123578999966    356777


Q ss_pred             HHHHHHHHHhc
Q 027424          210 LISDLDKALRT  220 (223)
Q Consensus       210 L~~dl~~Al~~  220 (223)
                      +++-|+++|+.
T Consensus       417 ~l~~l~~~l~~  427 (430)
T 3i4j_A          417 LLALLAGALED  427 (430)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            78888887764

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=98.08  E-value=4.4e-06  Score=74.98  Aligned_cols=102  Identities=15%  Similarity=0.204  Sum_probs=61.7

Q ss_pred             CccccCCEEEEecCCCCCCCc-C--c---ccCCCcEEEecccccccCCc-ccceeEEEecChhHHHHHHHHHH-------
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-R--P---LELGADIVMHSATKFIAGHS-DVMAGVLAVKGERLAKELYFLQN-------   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~--p---l~~GADivv~S~tK~l~G~~-d~~~G~v~~~~~~~~~~l~~~~~-------   66 (223)
                      +|+++|++||+|+++...... .  +   +....|++  |++|.++| + ..+|+ ++++ +++.+.+.....       
T Consensus       248 l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~G~-~~~~-~~~~~~l~~~~~~~~~~~~  322 (449)
T 3a8u_X          248 ICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPMGA-VIAS-TEIYQTFMNQPTPEYAVEF  322 (449)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCEE-EEEE-HHHHHHHHTCSSCTTSCSS
T ss_pred             HHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCceEE-EEEC-HHHHHHhhccCcccccccc
Confidence            478999999999998421111 1  1   12246876  88899986 4 45665 4454 456555542100       


Q ss_pred             hcC--CCCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc
Q 027424           67 AEG--SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        67 ~~g--~~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~  107 (223)
                      ..+  ...+|..+......++.+..  ..++..++...+.+.|++
T Consensus       323 ~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~  367 (449)
T 3a8u_X          323 PHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHG  367 (449)
T ss_dssp             CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            112  12466666666777776542  456667777778777776

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=98.05  E-value=1.8e-05  Score=71.14  Aligned_cols=120  Identities=22%  Similarity=0.290  Sum_probs=67.2

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCc-ccceeEEEecChhHHHHHHH---HHH-hcC
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHS-DVMAGVLAVKGERLAKELYF---LQN-AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~-d~~~G~v~~~~~~~~~~l~~---~~~-~~g   69 (223)
                      +|+++|++||+|+.+...      +.+.......|++  +++|.+++ + -.+|+ ++++ +++.+.+..   ... ..+
T Consensus       244 l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~ig~-~~~~-~~i~~~~~~~~~~~~~~~~  318 (452)
T 3n5m_A          244 TCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDII--TMAKGITS-AYLPLSA-TAVK-REIYEAFKGKGEYEFFRHI  318 (452)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSSCCEE-EEEE-HHHHGGGCSSSTTCSCCCC
T ss_pred             HHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEE--eecccccC-CCcceEE-EEEC-HHHHHHHhhccCCCCcccc
Confidence            478999999999996421      1111122235665  57899987 6 56655 5454 455554421   010 112


Q ss_pred             --CCCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHH----hcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           70 --SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL----ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        70 --~~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L----~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                        ...+|..+...+..|+.+..  ..++..++...+.+.|    +++|.+..+.                  +.|.++.|
T Consensus       319 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~------------------~~g~~~~i  380 (452)
T 3n5m_A          319 NTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIR------------------GKGLLVGI  380 (452)
T ss_dssp             CSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE------------------ESSSCEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE------------------EEEEEEEE
Confidence              23467767767777775432  2345555555555554    4566554432                  35777778


Q ss_pred             Ee
Q 027424          142 LT  143 (223)
Q Consensus       142 ~~  143 (223)
                      ++
T Consensus       381 ~~  382 (452)
T 3n5m_A          381 EL  382 (452)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=98.05  E-value=5.5e-05  Score=67.82  Aligned_cols=112  Identities=24%  Similarity=0.327  Sum_probs=61.0

Q ss_pred             CccccCCEEEEecC-CCCCCCcCcccCCCcEEEecccc-----cccCCcccceeEEEecChhHHHHHH------------
Q 027424            1 MAHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGERLAKELY------------   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT-~~s~~~~~pl~~GADivv~S~tK-----~l~G~~d~~~G~v~~~~~~~~~~l~------------   62 (223)
                      +||++|++++||.. .+-+....|-++|+|+++.|.+|     .++|+   -+|++.+++ ++.+.+.            
T Consensus       220 la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp---~~G~l~~~~-~~~~~l~~~~~g~~~~~~~  295 (438)
T 1wyu_A          220 AAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGP---HFGFLATKK-AFVRQLPGRLVSETVDVEG  295 (438)
T ss_dssp             HHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCS---CCEEEEECG-GGGGGCCSCCEEEEEBTTS
T ss_pred             HHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCccCCCC---CeeEEEEcH-HHHHhCCCceeccccccCC
Confidence            47899999997743 21222234556799999999444     34454   256776665 3433221            


Q ss_pred             -------------HHHHhcCCC-C---ChHhH---HHHHhcH--HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           63 -------------FLQNAEGSG-L---APFDC---WICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        63 -------------~~~~~~g~~-~---sp~da---~ll~~~l--~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                                   ..+...+.. .   ....+   +..+..+  +.+....++..+++..+.+.|++.|++ ++..|
T Consensus       296 ~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~  371 (438)
T 1wyu_A          296 RRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGV-RPFTP  371 (438)
T ss_dssp             CEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC-EECSC
T ss_pred             CcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCe-EECCC
Confidence                         011111211 1   11111   1001112  224455677788999999999998876 44433

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=98.02  E-value=0.00037  Score=62.53  Aligned_cols=105  Identities=16%  Similarity=0.185  Sum_probs=69.4

Q ss_pred             CCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHHHhcH
Q 027424            6 GALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV   84 (223)
Q Consensus         6 g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll~~~l   84 (223)
                      ++..++|+++-.+. ....+..+.+|++.|+||+++.++..+|. ++++++++.+++...........++...+.+...|
T Consensus       219 ~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G~RiG~-~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L  297 (427)
T 2hox_A          219 GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGW-ALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVL  297 (427)
T ss_dssp             TCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEE-EEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred             CCCEEEeecccCCCCCccccCCCceEEEEeChhcCCCCCceEEE-EEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence            45678898764321 11122347899999999999877877765 54655678777777665554456776555555555


Q ss_pred             HHH---------------HHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           85 KTM---------------ALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        85 ~tl---------------~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      +.-               ....++..++...+.+.|++.|.+
T Consensus       298 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  339 (427)
T 2hox_A          298 KEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRF  339 (427)
T ss_dssp             HHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSE
T ss_pred             hcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence            542               122356667788899999988765

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=98.01  E-value=3e-05  Score=69.02  Aligned_cols=165  Identities=15%  Similarity=0.190  Sum_probs=94.3

Q ss_pred             CccccCCEEEEecCCCCCC------CcCcccCCCcEEEecccccccCCc-ccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV------LSRPLELGADIVMHSATKFIAGHS-DVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~------~~~pl~~GADivv~S~tK~l~G~~-d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|+++|+++|+|+++..-.      .........|++  |++|.++| + -.+|+++ +++ ++. .+ ..........+
T Consensus       241 l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~riG~~~-~~~-~~~-~~-~~~~~~t~~~n  313 (419)
T 2eo5_A          241 LAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPIGATI-FRK-DLD-FK-PGMHSNTFGGN  313 (419)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCCEEEE-EEG-GGC-CC-------CCCCC
T ss_pred             HHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-CccceEEEE-Ech-Hhh-cC-CcccCCCCCCC
Confidence            4788999999999975211      011122345765  78999996 6 6666644 554 444 44 21111122346


Q ss_pred             hHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC-CHHHHHHH
Q 027424           74 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHV  152 (223)
Q Consensus        74 p~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~-~~~~~~~f  152 (223)
                      |..+......++.+....++..++...+.+.|++.  +..+                  .+.|.++.|++. +..... |
T Consensus       314 ~~~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~--~~~~------------------~~~g~~~~i~~~~~~~~~~-~  372 (419)
T 2eo5_A          314 ALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL--ADDV------------------RGIGLAWGLEYNEKKVRDR-I  372 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSEE------------------EEETTEEEEECSCHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhe------------------EeeeEEEEEEEecCccHHH-H
Confidence            76666777777766555566777778888888764  2221                  135778888883 222344 5


Q ss_pred             HhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          153 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       153 ~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      .+.+.  ..++-       + .|.                 .++.+|||+++    |+.+.+++-|+++++.
T Consensus       373 ~~~l~--~~Gv~-------v-~~~-----------------~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~  417 (419)
T 2eo5_A          373 IGESF--KRGLL-------L-LPA-----------------GRSAIRVIPPLVISEEEAKQGLDILKKVIKV  417 (419)
T ss_dssp             HHHHH--HTTEE-------C-EEE-----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HCCCE-------E-ecC-----------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            55542  11111       0 111                 14679998764    4566667777777654

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=97.95  E-value=5.9e-05  Score=69.90  Aligned_cols=53  Identities=9%  Similarity=0.056  Sum_probs=36.2

Q ss_pred             cc-ccCCEEEEecCCCCCCC-cCcc---cCCCcEEEecccccccCCcccceeEEEecCh
Q 027424            2 AH-AHGALLLVDNSIMSPVL-SRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGE   55 (223)
Q Consensus         2 a~-~~g~~lvVDnT~~s~~~-~~pl---~~GADivv~S~tK~l~G~~d~~~G~v~~~~~   55 (223)
                      |+ ++|+++|+|++++.... ..++   ..+.+|++.|+||+++.++..+|. ++++++
T Consensus       273 a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~-l~~~~~  330 (533)
T 3f6t_A          273 VEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGV-IALNEK  330 (533)
T ss_dssp             HHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEE-EEEESS
T ss_pred             HHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEE-EEECcH
Confidence            56 68999999999864321 1111   123459999999999877777765 545554

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=97.94  E-value=5.5e-05  Score=67.28  Aligned_cols=102  Identities=17%  Similarity=0.218  Sum_probs=58.8

Q ss_pred             CccccCCEEEEecCCCC----CC--CcCcccCCCcEEEecccccccCCc-ccceeEEEecChhHHHHHHHHH--H-hcCC
Q 027424            1 MAHAHGALLLVDNSIMS----PV--LSRPLELGADIVMHSATKFIAGHS-DVMAGVLAVKGERLAKELYFLQ--N-AEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~~--~~~pl~~GADivv~S~tK~l~G~~-d~~~G~v~~~~~~~~~~l~~~~--~-~~g~   70 (223)
                      +|+++|+++|+|++++.    +.  .+.......|++  |++|.++| + -.+|. ++++ +++.+.+....  . ..+.
T Consensus       234 l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-G~~~iG~-~~~~-~~~~~~l~~~~~~~~~~~~  308 (429)
T 1s0a_A          234 ICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTG-GTMTLSA-TLTT-REVAETISNGEAGCFMHGP  308 (429)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-SSSCCEE-EEEC-HHHHHHHHTSTTSSCSCCC
T ss_pred             HHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccC-CCccceE-EEeC-HHHHHHhhcCCCcccccCC
Confidence            47899999999999842    11  112223456876  67899986 4 45554 5454 45655543210  0 0121


Q ss_pred             C--CChHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhc
Q 027424           71 G--LAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        71 ~--~sp~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~  107 (223)
                      +  .+|..+......++.+.  ...++..++...+.+.|++
T Consensus       309 t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~  349 (429)
T 1s0a_A          309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAP  349 (429)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            2  35655555556666542  2345666677777777775

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=97.91  E-value=6.5e-05  Score=67.82  Aligned_cols=122  Identities=18%  Similarity=0.200  Sum_probs=70.8

Q ss_pred             CccccCCEEEEecCCCCC-----CC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH---HHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSP-----VL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---LQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-----~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~---~~~~~g~~   71 (223)
                      +|+++|++||+|+.+...     ++ ........|+++  ++|.++|..-.+|+ +++ ++++.+.+..   ........
T Consensus       248 l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t--~sK~l~gg~~~lg~-v~~-~~~i~~~~~~~~~~~~~~t~~  323 (459)
T 4a6r_A          248 ICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT--AAKGLSSGYLPIGA-VFV-GKRVAEGLIAGGDFNHGFTYS  323 (459)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSSCCEE-EEE-CHHHHHHHHHHCTTHHHHHHC
T ss_pred             HHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--hhhhhcCCCCCccc-eee-CHHHHHHhhcCCCcccCCCCC
Confidence            478999999999997421     11 111122357764  66999875456655 545 4566666541   11111113


Q ss_pred             CChHhHHHHHhcHHHHHH--HHHHHH-hHHHHHHHHH----hcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           72 LAPFDCWICLRGVKTMAL--RVEKQQ-DNAQKIAEFL----ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~--R~~~~~-~na~~la~~L----~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      .+|..+...+..|+.+..  .+++.. ++...+.+.|    +.+|.|..|.                  +.|.++.|++.
T Consensus       324 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------------------~~g~~~~~~~~  385 (459)
T 4a6r_A          324 GHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVR------------------GVGMVQAFTLV  385 (459)
T ss_dssp             SCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEE------------------EETTEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE------------------EEEEEEEEEEe
Confidence            477777777777775532  234445 5555555555    5667654433                  35778888873

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=97.89  E-value=7.6e-05  Score=66.36  Aligned_cols=102  Identities=15%  Similarity=0.136  Sum_probs=57.4

Q ss_pred             CccccCCEEEEecCCCCCCCc------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhc-C-CCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G-SGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~-g-~~~   72 (223)
                      +|+++|+++|+|+++..-...      .......|++  |++|.+++ +..+|. ++++ +++.+.+....... + ...
T Consensus       232 l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~~ig~-~~~~-~~~~~~~~~~~~~~~~t~~~  306 (433)
T 1zod_A          232 KCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGA-GLPLAA-IVTS-AAIEERAHELGYLFYTTHVS  306 (433)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHT-TSSCEE-EEEC-HHHHHHHHHTTCCCCCTTTT
T ss_pred             HHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccC-CCCeeE-EEEh-HHHHHhhccCCCCCCCCCCc
Confidence            478999999999998521111      1112234654  88899997 655554 5454 46666554311111 1 123


Q ss_pred             ChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc
Q 027424           73 APFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~  107 (223)
                      +|..+......++.+..  ..++..++...+.+.|++
T Consensus       307 ~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~  343 (433)
T 1zod_A          307 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLD  343 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            66666656666665422  235555566666666654

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=97.88  E-value=5.5e-06  Score=73.92  Aligned_cols=102  Identities=15%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             CccccCCEEEEecCCCC---C--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-hcC--CCC
Q 027424            1 MAHAHGALLLVDNSIMS---P--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEG--SGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s---~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-~~g--~~~   72 (223)
                      +|+++|++||+|++++.   +  +.+.......|++  |++|.++| +..+ |+++++ +++.+.+..... ..+  ...
T Consensus       229 l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~~~~-G~~~-G~~~~~-~~~~~~l~~~~~~~~~~t~~~  303 (429)
T 4e77_A          229 LCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKIIGG-GMPV-GAFGGR-REVMNALAPTGPVYQAGTLSG  303 (429)
T ss_dssp             HHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGGGGT-TSCC-EEEEEC-HHHHTTBTTTSSBCC--CCCC
T ss_pred             HHHHcCCEEEEeccccCcccCcchHHHhcCCCCCee--eecccccC-CCCe-EEEEEC-HHHHHHhccCCCccccCCCCC
Confidence            47899999999999861   1  1112222345765  78899995 5444 556554 455544332100 112  135


Q ss_pred             ChHhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHhc
Q 027424           73 APFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        73 sp~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~~  107 (223)
                      +|..+......|+.+  ...+++..++...+.+.|++
T Consensus       304 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  340 (429)
T 4e77_A          304 NPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRH  340 (429)
T ss_dssp             CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            777777777777765  23345566666666666654

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=97.88  E-value=3.1e-05  Score=70.31  Aligned_cols=168  Identities=14%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH-HH--hcCC-
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QN--AEGS-   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~-~~--~~g~-   70 (223)
                      +|+++|++||+|+.+..-      +.+.-.....|++  +++|.++|.--.+|+ ++++ +++.+.+... ..  ..+. 
T Consensus       263 l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~~~lG~-v~~~-~~i~~~~~~~~~~~~~~~~t  338 (457)
T 3tfu_A          263 ICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGYLSLAA-TLCT-ADVAHTISAGAAGALMHGPT  338 (457)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCCEE-EEEE-HHHHHHHHHSSSCSCCCCCT
T ss_pred             HHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCCcceEE-EEEc-HHHHHHhhccCCCceeEecC
Confidence            478999999999996421      1111122346777  888999873234554 5454 4565555311 00  1222 


Q ss_pred             -CCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc---CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           71 -GLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        71 -~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~---~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                       ..+|..+...+..|+.+..  ..++..++...+.+.|++   +|.|..|                  ++.|.++.|++.
T Consensus       339 ~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v------------------r~~G~~~~i~l~  400 (457)
T 3tfu_A          339 FMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDV------------------RVCGAIGVIECD  400 (457)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEE------------------EECSSCEEEEES
T ss_pred             CCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeee------------------ecCCeEEEEEEC
Confidence             3467777777777776532  245556666677777764   3444332                  235788888884


Q ss_pred             CHHHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHH
Q 027424          145 SLALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKA  217 (223)
Q Consensus       145 ~~~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~A  217 (223)
                      +...+.+|.+.+   +++-             .|                  ..+.+||+..    -|+.+.+++-|+++
T Consensus       401 ~~~~~~~~~~~l~~~Gv~v-------------~~------------------~~~~lRi~p~~~~t~eei~~~l~~L~~~  449 (457)
T 3tfu_A          401 RPVDLAVATPAALDRGVWL-------------RP------------------FRNLVYAMPPYICTPAEITQITSAMVEV  449 (457)
T ss_dssp             SCCCHHHHHHHHHHTTEEC-------------CC------------------BTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHCCeEE-------------Ee------------------cCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            221122333322   2220             11                  1256899743    35678888888888


Q ss_pred             HhcC
Q 027424          218 LRTG  221 (223)
Q Consensus       218 l~~~  221 (223)
                      ++..
T Consensus       450 l~~~  453 (457)
T 3tfu_A          450 ARLV  453 (457)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            8754

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=97.86  E-value=5.3e-05  Score=68.41  Aligned_cols=122  Identities=15%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             CccccCCEEEEecCCCCC-----CC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH----HH-hcC
Q 027424            1 MAHAHGALLLVDNSIMSP-----VL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----QN-AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-----~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~----~~-~~g   69 (223)
                      +|+++|++||+|+.+...     ++ ..-...-.|++  +++|.++|..-.+|+ ++++ +++.+.+...    .. ..+
T Consensus       250 l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~l~gG~~~lg~-v~~~-~~i~~~~~~~~~~~~~~~~~  325 (460)
T 3gju_A          250 VLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI--TIAKGLTSAYAPLSG-VIVA-DRVWQVLVQGSDKLGSLGHG  325 (460)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--EECGGGTTTSSCCEE-EEEE-HHHHHHHHHHHHHHCSCSCC
T ss_pred             HHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee--eeehhhcCCCCCeEE-EEEC-HHHHHHHhcccccccccccC
Confidence            478999999999997421     11 11112234666  567999873245555 5454 4566655421    11 112


Q ss_pred             --CCCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHH----HHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           70 --SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAE----FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        70 --~~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~----~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                        ...+|..+...+..|+.+..  .+++..++...+.+    .++++|.+..|.                  +.|.++.|
T Consensus       326 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------------------~~g~~~~~  387 (460)
T 3gju_A          326 WTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVR------------------GDGMLAAV  387 (460)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEE------------------EETTEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe------------------eeeEEEEE
Confidence              23467767777777775421  23444445444444    445677664443                  35778888


Q ss_pred             EeC
Q 027424          142 LTG  144 (223)
Q Consensus       142 ~~~  144 (223)
                      ++.
T Consensus       388 ~~~  390 (460)
T 3gju_A          388 EFV  390 (460)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            873

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=97.79  E-value=3.2e-05  Score=69.59  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=67.5

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCc-ccceeEEEecChhHHHHHHH-------HHH
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHS-DVMAGVLAVKGERLAKELYF-------LQN   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~-d~~~G~v~~~~~~~~~~l~~-------~~~   66 (223)
                      +|++||++||+|+.+..-      +.+.-...-.|++  +++|.++| + ..+|+ ++.+ +++.+.+..       ...
T Consensus       240 l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~--t~sK~l~~-G~~~ig~-v~~~-~~~~~~~~~~~~~~~~~~~  314 (448)
T 3dod_A          240 LCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM--AAGKGITG-GYLPIAV-TFAT-EDIYKAFYDDYENLKTFFH  314 (448)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEE-EEEE-HHHHHTTCSCGGGCCCCCC
T ss_pred             HHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEE--EecccccC-CcCceEE-EEEC-HHHHHHhhhccccCCcccc
Confidence            478999999999996421      1111122235665  56799986 5 35554 5454 455554422       101


Q ss_pred             hcCCCCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHh---cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           67 AEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA---SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        67 ~~g~~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~---~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      ......+|..+...+..|+.+..  ..++..++...+.+.|+   .+|.+..+                  ++.|.++.|
T Consensus       315 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------------------~~~g~~~~~  376 (448)
T 3dod_A          315 GHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDI------------------RQLGFMCGA  376 (448)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEEEE
T ss_pred             cCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EeeeEEEEE
Confidence            11123467777777777775532  24555555555555554   45544332                  235778888


Q ss_pred             EeC
Q 027424          142 LTG  144 (223)
Q Consensus       142 ~~~  144 (223)
                      ++.
T Consensus       377 ~~~  379 (448)
T 3dod_A          377 ELV  379 (448)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            873

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=97.78  E-value=1.1e-05  Score=72.14  Aligned_cols=101  Identities=18%  Similarity=0.218  Sum_probs=61.0

Q ss_pred             CccccCCEEEEecCCCCCCCcCc------ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-hcCC--C
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGS--G   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p------l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-~~g~--~   71 (223)
                      +|+++|++||+|++++ ++...+      +....|++  |++|.+++ +.. .|+++++ +++.+.+..... ..+.  .
T Consensus       232 l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~-~G~v~~~-~~~~~~l~~~~~~~~~~t~~  305 (434)
T 2epj_A          232 LSRESGALLILDEVVT-GFRLGLEGAQGYFNIEGDII--VLGKIIGG-GFP-VGAVAGS-REVMSLLTPQGKVFNAGTFN  305 (434)
T ss_dssp             HHHHHTCEEEEEETTT-TTTSSTTHHHHHHTCCCSEE--EEEGGGGT-TSS-CEEEEEC-HHHHTTBTTTSSBCCCCTTT
T ss_pred             HHHHcCCEEEEEcchh-ceeCCcchhhHHhCCCCCee--eecchhcC-Ccc-eeeeeec-HHHHHhhccCCCcccCCCCC
Confidence            4789999999999986 332111      12246765  88899997 545 4556555 455444322100 1222  3


Q ss_pred             CChHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhc
Q 027424           72 LAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~  107 (223)
                      .+|..+......|+.+.  ...++..++...+.+.|++
T Consensus       306 ~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~  343 (434)
T 2epj_A          306 AHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASE  343 (434)
T ss_dssp             TCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            56777777777777654  2346666667777777765

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=97.75  E-value=6.9e-05  Score=67.76  Aligned_cols=171  Identities=19%  Similarity=0.275  Sum_probs=91.4

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +|++||++||+|+.+.. +.       +.....-.|++  +++|.+++ +-.+|+ ++++ +++.+.+...........+
T Consensus       254 l~~~~~~llI~DEv~~g-~g~~g~~~a~~~~~~~pdi~--t~sK~~~~-G~~~G~-~~~~-~~i~~~~~~~~~~~t~~~~  327 (453)
T 4ffc_A          254 WASENGVVFIADEVQTG-FARTGAWFASEHEGIVPDIV--TMAKGIAG-GMPLSA-VTGR-AELMDAVYAGGLGGTYGGN  327 (453)
T ss_dssp             HHHHHTCEEEEECTTTT-TTTTSSSSTHHHHTCCCSEE--EECGGGGT-TSSCEE-EEEE-HHHHTTSCTTSSCCSSSSC
T ss_pred             HHHHcCCEEEEecCccC-CCcccccchhhhcCCCcchH--hhhhhhcC-CcCeEE-EEEC-HHHHhhhcccCcCCCCCcC
Confidence            47899999999999742 21       11111224554  67899987 666655 5454 4554443321111122346


Q ss_pred             hHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHH----hcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC---
Q 027424           74 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL----ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---  144 (223)
Q Consensus        74 p~da~ll~~~l~tl~~--R~~~~~~na~~la~~L----~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~---  144 (223)
                      |..+...+..|+.+..  ..++..++...+.+.|    +.+|.+..|.                  +.|.++.|++.   
T Consensus       328 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~------------------~~g~~~~~~~~~~~  389 (453)
T 4ffc_A          328 PVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVR------------------GRGAMLAIEIVKPG  389 (453)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEE------------------EETTEEEEEEBCTT
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE------------------eeceEEEEEEecCc
Confidence            7666666666665421  2344444444444444    4567554332                  35788888872   


Q ss_pred             ----CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHH
Q 027424          145 ----SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDK  216 (223)
Q Consensus       145 ----~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~  216 (223)
                          +...+.+|.+.+.  ..++-+        .|.               |..++.+||+..+    |+.+.+++-|++
T Consensus       390 ~~~~~~~~~~~~~~~l~--~~Gv~v--------~~~---------------~~~~~~iRi~~~~~~t~e~i~~~l~~l~~  444 (453)
T 4ffc_A          390 TLEPDAALTKSIAAEAL--SQGVLI--------LTC---------------GTFGNVIRLLPPLVIGDDLLDEGITALSD  444 (453)
T ss_dssp             SCCBCHHHHHHHHHHHH--HTTEEC--------CEE---------------CTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHH--hCCCEE--------ecC---------------CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                2334555554431  111111        111               1123679997654    456677777777


Q ss_pred             HHhc
Q 027424          217 ALRT  220 (223)
Q Consensus       217 Al~~  220 (223)
                      +++.
T Consensus       445 ~l~~  448 (453)
T 4ffc_A          445 IIRA  448 (453)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7763

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=97.72  E-value=0.00027  Score=64.39  Aligned_cols=121  Identities=21%  Similarity=0.262  Sum_probs=71.3

Q ss_pred             CccccCCEEEEecCCCCC-----C-CcC-cccCCCcEEEecccccccCCc-ccceeEEEecChhHHHHHHHHH---H--h
Q 027424            1 MAHAHGALLLVDNSIMSP-----V-LSR-PLELGADIVMHSATKFIAGHS-DVMAGVLAVKGERLAKELYFLQ---N--A   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-----~-~~~-pl~~GADivv~S~tK~l~G~~-d~~~G~v~~~~~~~~~~l~~~~---~--~   67 (223)
                      +|+++|++||+|+.+..-     + .+. -...-.||++  ++|.++| + --+|+ +++ ++++.+.+....   .  .
T Consensus       250 lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~-G~~plg~-v~~-~~~i~~~~~~~~~~~~~~~  324 (476)
T 3i5t_A          250 ICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--FAKGVTS-GYVPLGG-LAI-SEAVLARISGENAKGSWFT  324 (476)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--ECGGGGT-TSSCCEE-EEE-CHHHHHTTSGGGCTTCEEC
T ss_pred             HHHHcCCEEEEEecccCCccccCceeeecccCCCcchhh--hhhhhcC-CCcCeEE-EEE-CHHHHHHHhcCCccccccc
Confidence            478999999999997421     1 011 1222357775  6699987 4 45554 545 456655443210   0  1


Q ss_pred             cC--CCCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc---CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEE
Q 027424           68 EG--SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  140 (223)
Q Consensus        68 ~g--~~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~---~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~s  140 (223)
                      .+  ...+|..+...+..|+.+..  ..++..++...+.+.|+.   +|.|..|                  ++.|.++.
T Consensus       325 ~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v------------------~~~G~~~~  386 (476)
T 3i5t_A          325 NGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAET------------------RSVGLVGC  386 (476)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEE------------------EEETTEEE
T ss_pred             ccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EecCceeE
Confidence            12  23467777777777776532  246666777777777764   4444332                  34688888


Q ss_pred             EEeC
Q 027424          141 FLTG  144 (223)
Q Consensus       141 f~~~  144 (223)
                      |++.
T Consensus       387 i~~~  390 (476)
T 3i5t_A          387 VQCL  390 (476)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8883

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=97.72  E-value=0.002  Score=57.35  Aligned_cols=138  Identities=17%  Similarity=0.181  Sum_probs=78.3

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHH------HH-H--HHHHH--hc
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA------KE-L--YFLQN--AE   68 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~------~~-l--~~~~~--~~   68 (223)
                      +|+++|++++||.+-+-+. ..+.-++|  +++-|.+|+++..+   .|++..+++.+.      .. +  .....  ..
T Consensus       172 i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G---~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~  246 (377)
T 3e77_A          172 IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAG---VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSL  246 (377)
T ss_dssp             CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTT---CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTC
T ss_pred             hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCc---cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCC
Confidence            4788999999999865432 22333344  68899999995333   345556653210      00 1  11111  11


Q ss_pred             CCCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           69 GSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        69 g~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      ..+.+-...+.+..+++.+      ..+.++..+.+..+.+.|++.|.+. + .|.   .+.+        ..+.+++|.
T Consensus       247 ~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~-~-~~~---~~~~--------rs~~ivsf~  313 (377)
T 3e77_A          247 YNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFY-V-CPV---EPQN--------RSKMNIPFR  313 (377)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSE-E-CCS---CGGG--------BCSSEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCce-e-cCC---CHHH--------cCCcEEEEE
Confidence            1233445566666677754      3455677778888888998888753 2 231   1111        135679999


Q ss_pred             eCC----HHHHHHHHhhc
Q 027424          143 TGS----LALSKHVVETT  156 (223)
Q Consensus       143 ~~~----~~~~~~f~~~l  156 (223)
                      +.+    .+....|++.+
T Consensus       314 ~~~~~~~~~~~~~~l~~l  331 (377)
T 3e77_A          314 IGNAKGDDALEKRFLDKA  331 (377)
T ss_dssp             ESSTTCCHHHHHHHHHHH
T ss_pred             cCCCCCchhHHHHHHHHH
Confidence            853    32224566654

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=97.70  E-value=0.00021  Score=65.17  Aligned_cols=122  Identities=16%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             CccccCCEEEEecCCCCC-----CC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC--CC
Q 027424            1 MAHAHGALLLVDNSIMSP-----VL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--GL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-----~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~--~~   72 (223)
                      +|+++|++||+|+.+...     ++ +.....-.|+++  ++|.++|..--+|+ ++++ +++.+.+....-..+.  ..
T Consensus       252 l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~~plG~-v~~~-~~i~~~~~~~~~~~~~t~~~  327 (472)
T 3hmu_A          252 ICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGYAPIGG-SIVC-DEVAHVIGKDEFNHGYTYSG  327 (472)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTSSCCEE-EEEE-HHHHHHHTTSCBCCCCTTTT
T ss_pred             HHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCCcceEE-EEEC-HHHHHhcccCCccccCCCCC
Confidence            478999999999997421     11 111222367775  56999875455655 4454 4565555210001222  24


Q ss_pred             ChHhHHHHHhcHHHHH--HHHHHHH-hHHHHHHHHHhc---CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           73 APFDCWICLRGVKTMA--LRVEKQQ-DNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        73 sp~da~ll~~~l~tl~--~R~~~~~-~na~~la~~L~~---~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      +|..+...+..|+.+.  ...++.. ++...+.+.|+.   +|.|..|                  ++.|.++.|++.
T Consensus       328 np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v------------------r~~G~~~~i~~~  387 (472)
T 3hmu_A          328 HPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEA------------------KIVGMMASIALT  387 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEE------------------EEETTEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EecCceEEEEEe
Confidence            6777777777777653  2245556 667777777754   4544333                  246888889884

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=97.63  E-value=8.9e-05  Score=65.91  Aligned_cols=99  Identities=17%  Similarity=0.164  Sum_probs=59.9

Q ss_pred             cccCCEEEEecCCCCCCCcCc------ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-hcCC--CCC
Q 027424            3 HAHGALLLVDNSIMSPVLSRP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGS--GLA   73 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~~~~~p------l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-~~g~--~~s   73 (223)
                      +++|++||+|++++ ++...+      +....|++  |++|.++| +..+ |+++++ +++.+.+..... ..+.  ..+
T Consensus       229 ~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~~~~~-~~~~~~~~~~~~~~~~~t~~~~  302 (424)
T 2e7u_A          229 KAYGVLLIADEVMT-GFRLAFGGATELLGLKPDLV--TLGKILGG-GLPA-AAYAGR-REIMEKVAPLGPVYQAGTLSGN  302 (424)
T ss_dssp             GGGTCEEEEECTTT-TTTSSTTHHHHHHTCCCSEE--EECGGGGT-TSSC-EEEEEC-HHHHTTBTTTSSBCCCCTTCSC
T ss_pred             HHcCCEEEEecCcc-ccccchhHHHHHhCCCcchh--hhhhhhhC-Ccce-EEEEEc-HHHHhhhcccCCcccCCCCCCC
Confidence            78999999999986 332111      11236765  88999997 5554 556554 455544432110 1221  346


Q ss_pred             hHhHHHHHhcHHHHHH---HHHHHHhHHHHHHHHHhc
Q 027424           74 PFDCWICLRGVKTMAL---RVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        74 p~da~ll~~~l~tl~~---R~~~~~~na~~la~~L~~  107 (223)
                      |..+......++.+..   ..++..++...+.+.|++
T Consensus       303 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~  339 (424)
T 2e7u_A          303 PLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKE  339 (424)
T ss_dssp             HHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            7666667777766533   456667777777777765

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=97.62  E-value=0.00017  Score=65.89  Aligned_cols=171  Identities=18%  Similarity=0.193  Sum_probs=89.5

Q ss_pred             CccccCCEEEEecCCCC------CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--C
Q 027424            1 MAHAHGALLLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--L   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--~   72 (223)
                      +|++||+++|+|+....      .+.+.-...-.||++-+  |.++|. --+++ ++.++ ++.+.+..  ...|.+  -
T Consensus       255 lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg-~P~~a-v~~~~-~i~~~~~~--~~~~~Tf~g  327 (456)
T 4atq_A          255 WAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAGG-LPLSA-ITGRA-DLLDAVHP--GGLGGTYGG  327 (456)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTT-SSCEE-EEEEH-HHHTTSCT--TSSCCSSSS
T ss_pred             HHhhcCCceEecccccccCCccccccccccCCCCchhhhh--hcccCc-CCcee-eEecH-HHHhcccc--cCCCCCCCC
Confidence            48999999999998632      12222222336998765  888763 44544 54553 44333221  112222  2


Q ss_pred             ChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHh----c-----CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           73 APFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLA----S-----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~----~-----~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                      +|..|...+..|+.+...  +++..+....+.+.|+    +     ||.|..|+                  |.|-|+.|
T Consensus       328 npla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VR------------------G~Gl~~gi  389 (456)
T 4atq_A          328 NPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIR------------------GRGAMLAI  389 (456)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEE------------------EETTEEEE
T ss_pred             ChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEee------------------ecceEEEE
Confidence            677777777777766321  1222222222222222    2     35555554                  57889999


Q ss_pred             EeC-------CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHH
Q 027424          142 LTG-------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDL  210 (223)
Q Consensus       142 ~~~-------~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL  210 (223)
                      ++.       +.+.++++.+.+.  ..|.-+        .+               .|...+.|||+    +.-|+.++.
T Consensus       390 el~~~~~~~~~~~~~~~v~~~~~--~~Gvl~--------~~---------------~g~~~~~irl~PpL~it~~~id~~  444 (456)
T 4atq_A          390 ELVQPGSKEPNAELTKAVAAACL--KEGVII--------LT---------------CGTYGNVIRLLPPLVISDELLIDG  444 (456)
T ss_dssp             EEBCTTSCCBCHHHHHHHHHHHH--HTTEEC--------EE---------------ECTTSCEEEECCCTTCCHHHHHHH
T ss_pred             EEecCCCCCcCHHHHHHHHHHHH--HCCCEE--------Ee---------------cCCCCCEEEEECCCCCCHHHHHHH
Confidence            982       2233445544331  111100        00               01122445554    445778899


Q ss_pred             HHHHHHHHhcC
Q 027424          211 ISDLDKALRTG  221 (223)
Q Consensus       211 ~~dl~~Al~~~  221 (223)
                      ++-|++||++.
T Consensus       445 l~~l~~al~a~  455 (456)
T 4atq_A          445 LEVLAAAIKAH  455 (456)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999999853

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=97.60  E-value=0.00021  Score=64.09  Aligned_cols=105  Identities=10%  Similarity=-0.013  Sum_probs=59.0

Q ss_pred             ccccCCEEEEecCCCCCCCc--C----cc----cCCC-cEEEecccccccCCcccceeEEE-ecChhHHHHHHH----HH
Q 027424            2 AHAHGALLLVDNSIMSPVLS--R----PL----ELGA-DIVMHSATKFIAGHSDVMAGVLA-VKGERLAKELYF----LQ   65 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~--~----pl----~~GA-Divv~S~tK~l~G~~d~~~G~v~-~~~~~~~~~l~~----~~   65 (223)
                      |+++++++|+|+.+..-..-  .    ++    +.+- =|++.|+||+++-.|..+|.+++ ..++++.+++..    ..
T Consensus       203 ~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~  282 (405)
T 3k7y_A          203 VLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIV  282 (405)
T ss_dssp             HHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             HHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            67899999999998532211  0    11    1221 28889999999877888887654 345555444432    22


Q ss_pred             HhcCCCCChHhHHHHHhcHHH------H---HHHH-HHHHhHHHHHHHHHh
Q 027424           66 NAEGSGLAPFDCWICLRGVKT------M---ALRV-EKQQDNAQKIAEFLA  106 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~~~l~t------l---~~R~-~~~~~na~~la~~L~  106 (223)
                      +..-...+.+....+...++.      +   ..++ ++..++...+.+.|+
T Consensus       283 ~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~  333 (405)
T 3k7y_A          283 RKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLE  333 (405)
T ss_dssp             HTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222233433333333322      1   1222 445667777888888

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=97.59  E-value=6.3e-05  Score=67.05  Aligned_cols=101  Identities=14%  Similarity=0.133  Sum_probs=57.5

Q ss_pred             CccccCCEEEEecCCCCCCCc------CcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-hcC--CC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEG--SG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~------~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-~~g--~~   71 (223)
                      +|+++|++||+|+++. .+..      .......|++  +++|.++| +-.+ |+++++ +++.+.+..... ..+  ..
T Consensus       229 l~~~~~~~li~DEv~~-g~~~g~~~~~~~~~~~~di~--t~sK~~~~-G~~i-G~~~~~-~~~~~~~~~~~~~~~~~t~~  302 (429)
T 3k28_A          229 VTEQNGALLIFDEVMT-GFRVAYNCGQGYYGVTPDLT--CLGKVIGG-GLPV-GAYGGK-AEIMRQVAPSGPIYQAGTLS  302 (429)
T ss_dssp             HHHHHTCEEEEECTTT-TTTSSTTHHHHHHTCCCSEE--EECGGGGT-TSCC-EEEEEC-HHHHTTBTTTSSBCCCCTTT
T ss_pred             HHHHcCCEEEEecccc-ccccCcchHHHHhCCCCcee--hhhhhhcC-CCCe-EEEEEc-HHHHhhhccCCCccccCCCC
Confidence            4789999999999984 3211      1112234654  67899986 5555 556554 455544322111 122  23


Q ss_pred             CChHhHHHHHhcHHHH-HHHHHHHHhHHHHHHHHHhc
Q 027424           72 LAPFDCWICLRGVKTM-ALRVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl-~~R~~~~~~na~~la~~L~~  107 (223)
                      .+|..+...+..++.+ ....++..++...+.+.|++
T Consensus       303 ~~~~a~aaa~aal~~~~~~~~~~~~~~~~~l~~~L~~  339 (429)
T 3k28_A          303 GNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRK  339 (429)
T ss_dssp             TCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666666666666643 33345666666666666654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=97.59  E-value=0.00021  Score=61.10  Aligned_cols=106  Identities=14%  Similarity=0.023  Sum_probs=58.4

Q ss_pred             CccccCCEEEEecCC---C--C-CCCcCccc--CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSI---M--S-PVLSRPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~---~--s-~~~~~pl~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|+++   +  . +...+.+.  .++|+++.|.+|. +|.  .-.|++++++ ++.+.+.......+...
T Consensus       172 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~--~~~g~l~~~~-~~~~~~~~~~~~~~~~~  247 (359)
T 1svv_A          172 SCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGM--FGEALIILND-ALKPNARHLIKQRGALM  247 (359)
T ss_dssp             HHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCS--SCEEEEECSG-GGCTTHHHHHHHTTCCC
T ss_pred             HHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCC--CceEEEEEcc-cHHHHHHHHHhcCCccc
Confidence            478999999999997   2  1 22222211  4689999999997 332  2236776654 55444443322223211


Q ss_pred             --ChHhHHHHHhcH--HHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           73 --APFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        73 --sp~da~ll~~~l--~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                        ++.....+...+  +.+....++..++...+.+.| +.+++
T Consensus       248 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~  289 (359)
T 1svv_A          248 AKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EACGI  289 (359)
T ss_dssp             TTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCe
Confidence              221111111112  123445577778888888888 45554

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=97.58  E-value=0.00014  Score=65.27  Aligned_cols=101  Identities=21%  Similarity=0.190  Sum_probs=60.6

Q ss_pred             CccccCCEEEEecCCCCCCCcC------cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH---HHHhcC--
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---LQNAEG--   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~---~~~~~g--   69 (223)
                      +|+++|++||+|++++ ++...      .+....|++  |++|.++| +.. .|+++++ +++.+.+..   .....+  
T Consensus       230 l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~-~G~v~~~-~~~~~~l~~~~~~~~~~~~t  303 (453)
T 2cy8_A          230 LARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT--CLAKASAG-GLP-GGILGGR-EDVMGVLSRGSDRKVLHQGT  303 (453)
T ss_dssp             HHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE--EEEGGGGT-TSS-CEEEEEC-HHHHTTSSSCC---------
T ss_pred             HHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE--EEChhhhC-Ccc-eEEEech-HHHHHHhccccCCCceeCCC
Confidence            4789999999999986 43211      122346866  88899997 544 4556555 455544332   100111  


Q ss_pred             CCCChHhHHHHHhcHHH-H-HHHHHHHHhHHHHHHHHHhc
Q 027424           70 SGLAPFDCWICLRGVKT-M-ALRVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~t-l-~~R~~~~~~na~~la~~L~~  107 (223)
                      ...+|..+......|+. + ....++..++...+.+.|++
T Consensus       304 ~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~  343 (453)
T 2cy8_A          304 FTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNH  343 (453)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            23577777777777776 4 23345666666666666654

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=97.58  E-value=8.6e-05  Score=66.10  Aligned_cols=120  Identities=15%  Similarity=0.136  Sum_probs=67.5

Q ss_pred             CccccCCEEEEecCCCCC---CC--cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-HhcC--CCC
Q 027424            1 MAHAHGALLLVDNSIMSP---VL--SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEG--SGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~---~~--~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~~~g--~~~   72 (223)
                      +|+++|++||+|+++...   ..  +.......|++  +++|.++| +..+|+ ++++ +++.+.+.... ...+  ...
T Consensus       231 l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~~-G~~iG~-~~~~-~~i~~~~~~~~~~~~~~t~~~  305 (434)
T 3l44_A          231 LVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLT--ALGKVIGG-GLPIGA-YGGK-KEIMEQVAPLGPAYQAGTMAG  305 (434)
T ss_dssp             HHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEE--EEEGGGGT-TSSCEE-EEEC-HHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHcCCEEEEeccccceeccccHHHHHcCCCCCee--ehhhhhcC-CcCeee-EEEc-HHHHHhhccCCCcccCCCCCc
Confidence            478999999999998522   10  11122235654  67899985 566665 4454 45554432210 0122  234


Q ss_pred             ChHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhc----CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           73 APFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        73 sp~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      +|..+......++.+.  ...++..++...+.+.|++    ++.+..+                  ++.|.++.+++
T Consensus       306 ~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~~~~  364 (434)
T 3l44_A          306 NPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITL------------------NRLKGALTVYF  364 (434)
T ss_dssp             CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE------------------EEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE------------------EeeccEEEEEE
Confidence            6666666666666542  3345666666666666654    4433222                  23678888887

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=97.56  E-value=0.0002  Score=64.57  Aligned_cols=165  Identities=20%  Similarity=0.239  Sum_probs=91.3

Q ss_pred             CccccCCEEEEecCCCCCCC-------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHH--HH-HHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY--FL-QNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~--~~-~~~~g~   70 (223)
                      +|+++|+++|+|+++.. +.       +.......|++  |++|.+     .+|+ +++++ ++.+.+.  .. ....+.
T Consensus       260 l~~~~g~lli~DEv~~g-~g~~g~~~~~~~~~~~~di~--t~sK~l-----~iG~-~~~~~-~~~~~l~~~~~~~~~~~~  329 (449)
T 2cjg_A          260 LCDEFDALLIFDEVQTG-CGLTGTAWAYQQLDVAPDIV--AFGKKT-----QVCG-VMAGR-RVDEVADNVFAVPSRLNS  329 (449)
T ss_dssp             HHHHTTCEEEEECTTTT-TTTTSSSSTHHHHTCCCSEE--EECGGG-----SSEE-EEECG-GGGGSTTCTTTSTTSSCC
T ss_pred             HHHHCCcEEEEeccccC-CCccCcceeecccCCCceEE--EecCcc-----cEEE-EEECH-HHhhhhhhcccCCccccc
Confidence            47899999999999752 21       11222356766  677998     3555 54554 5544311  00 011222


Q ss_pred             --CCChHhHHHHHhcHHHHH--HHHHHHHhHHHHHHHHHhc----CCC-eeEEEcCCCCCCcchHHHHhhhCCCCeeEEE
Q 027424           71 --GLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  141 (223)
Q Consensus        71 --~~sp~da~ll~~~l~tl~--~R~~~~~~na~~la~~L~~----~p~-v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf  141 (223)
                        ..+|..+......++.+.  ...++..++...+.+.|++    +|. +..+                  ++.|.++.|
T Consensus       330 t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~------------------~~~g~~~~~  391 (449)
T 2cjg_A          330 TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDP------------------RGRGLMCAF  391 (449)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE------------------EEETTEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE------------------eeccEEEEE
Confidence              235666666666776543  2235566667777777764    453 3222                  235788999


Q ss_pred             EeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHH
Q 027424          142 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  217 (223)
Q Consensus       142 ~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~A  217 (223)
                      ++.+.....+|.+.+.  ..++        +..|.                 .++.||||..+    |+.+.+++-|+++
T Consensus       392 ~~~~~~~~~~~~~~l~--~~Gv--------~v~~~-----------------g~~~iRi~~~~~~t~e~i~~~l~~l~~~  444 (449)
T 2cjg_A          392 SLPTTADRDELIRQLW--QRAV--------IVLPA-----------------GADTVRFRPPLTVSTAEIDAAIAAVRSA  444 (449)
T ss_dssp             ECSSHHHHHHHHHHHH--HTTE--------ECEEE-----------------TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             EECChHHHHHHHHHHH--HCCe--------EEecC-----------------CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            8865433445555442  1111        00111                 14679997654    4566677777777


Q ss_pred             Hhc
Q 027424          218 LRT  220 (223)
Q Consensus       218 l~~  220 (223)
                      ++.
T Consensus       445 l~~  447 (449)
T 2cjg_A          445 LPV  447 (449)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=97.53  E-value=0.00033  Score=62.59  Aligned_cols=105  Identities=19%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             CccccCCEEEEecCCCCC-----------CCcCcc-------cCCCcEEEecccccccCCcccceeEEEecChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSP-----------VLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-----------~~~~pl-------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~   62 (223)
                      +|+++|+++|+|++++.+           +.-.++       ...+|+++.|.+|+.+ .+  .+|+++.+++++.+.+.
T Consensus       203 la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~--~gG~~~~~~~~~~~~~~  279 (456)
T 2ez2_A          203 LTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN--IGGFLCMNDDEMFSSAK  279 (456)
T ss_dssp             HHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS--SCEEEEESCHHHHHHHH
T ss_pred             HHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CC--ceeEEEECCHHHHHHHH
Confidence            478999999999997541           222221       2347999989889865 33  47888776677777665


Q ss_pred             HHHHh-cC----CCCChHhHHH-HHhcHHHH-HHHHHHHHhHHHHHHHHHhcC
Q 027424           63 FLQNA-EG----SGLAPFDCWI-CLRGVKTM-ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        63 ~~~~~-~g----~~~sp~da~l-l~~~l~tl-~~R~~~~~~na~~la~~L~~~  108 (223)
                      ..... .|    ...++..... ...-++.+ ...+++..+++..+.+.|++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (456)
T 2ez2_A          280 ELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAA  332 (456)
T ss_dssp             HHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhccCcccccCcchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            54332 12    1123222111 22222333 345566677778888888763

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=97.52  E-value=0.00026  Score=64.47  Aligned_cols=162  Identities=15%  Similarity=0.211  Sum_probs=86.5

Q ss_pred             CccccCCEEEEecCCCCCCCcC----cc-cCC----CcEEEeccccc-ccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PL-ELG----ADIVMHSATKF-IAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl-~~G----ADivv~S~tK~-l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|+++|+++|+|++.. .+...    .+ .+|    .|++  |++|. ++      ||+++  ++++. .+... ...+.
T Consensus       287 l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~--~~~~~-~~~~~-~~~~T  353 (472)
T 1ohv_A          287 ISRKHGCAFLVDEVQT-GGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH--KEEFR-PNAPY-RIFNT  353 (472)
T ss_dssp             HHHHTTCEEEEECTTT-TTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE--CGGGS-CSSSS-SSCCS
T ss_pred             HHHHhCCEEEEeCccc-CCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC--chhhc-ccccc-cccCc
Confidence            4789999999999974 22211    11 235    6765  67798 55      36664  44442 11100 11121


Q ss_pred             -CCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhc----CCC-eeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           71 -GLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        71 -~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~----~p~-v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                       ..+|..+...+..|+.+..  ..++..+....+.+.|++    +|. |..|                  ++.|.++.|+
T Consensus       354 ~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~------------------~~~g~~~~~~  415 (472)
T 1ohv_A          354 WLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRV------------------RGRGTFCSFD  415 (472)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE------------------EEETTEEEEE
T ss_pred             cCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEee------------------cCCceEEEEE
Confidence             2467666666666765432  234444555555555543    332 2221                  2357889998


Q ss_pred             eCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHH
Q 027424          143 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  218 (223)
Q Consensus       143 ~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al  218 (223)
                      +.+.....+|.+.+.  ..++.        ..|.                 ..+.||||.++    |+.+.+++.|++++
T Consensus       416 ~~~~~~~~~~~~~l~--~~Gv~--------~~~~-----------------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l  468 (472)
T 1ohv_A          416 TPDESIRNKLISIAR--NKGVM--------LGGC-----------------GDKSIRFRPTLVFRDHHAHLFLNIFSDIL  468 (472)
T ss_dssp             CSSHHHHHHHHHHHH--HTTEE--------CEEE-----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             eCChhHHHHHHHHHH--HCCeE--------EecC-----------------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            865444556665551  11110        0110                 14679998774    45666677777776


Q ss_pred             hc
Q 027424          219 RT  220 (223)
Q Consensus       219 ~~  220 (223)
                      +.
T Consensus       469 ~~  470 (472)
T 1ohv_A          469 AD  470 (472)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=97.52  E-value=0.00079  Score=61.83  Aligned_cols=121  Identities=17%  Similarity=0.231  Sum_probs=71.0

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-----hcC
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-----AEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-----~~g   69 (223)
                      +|+++|+++|+|+.....      +.+.-...-.||++  +.|.++|..--+++ ++.+ +++.+.+.....     ..|
T Consensus       265 lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~~Pl~a-v~~~-~~i~~~~~~~~~~~~~~~hg  340 (473)
T 4e3q_A          265 ILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGFFPMGA-VILG-PELSKRLETAIEAIEEFPHG  340 (473)
T ss_dssp             HHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTSSCCEE-EEEC-HHHHHHHHHHHHHHSCCCCC
T ss_pred             HhcccceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCCCCccc-cccc-HHHHHHhccccccccccccC
Confidence            489999999999996321      11222222369887  46999864445555 4454 466665543211     123


Q ss_pred             CCC--ChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHH---HhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEE
Q 027424           70 SGL--APFDCWICLRGVKTMALR--VEKQQDNAQKIAEF---LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  142 (223)
Q Consensus        70 ~~~--sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~---L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~  142 (223)
                      .+.  +|..|...+..|+.+...  +++..+....+.+.   |.++|.|..|+                  |.|-|+.|+
T Consensus       341 ~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vR------------------G~Gl~~gie  402 (473)
T 4e3q_A          341 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYR------------------GIGFMWALE  402 (473)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEE------------------EETTEEEEE
T ss_pred             CCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEe------------------ecceEEEEE
Confidence            332  577777777777776421  23333333344333   34577776665                  568899998


Q ss_pred             e
Q 027424          143 T  143 (223)
Q Consensus       143 ~  143 (223)
                      +
T Consensus       403 l  403 (473)
T 4e3q_A          403 A  403 (473)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=97.33  E-value=0.0064  Score=53.72  Aligned_cols=125  Identities=13%  Similarity=0.047  Sum_probs=71.7

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHHH-----------H-HH-
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----------L-QN-   66 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~-----------~-~~-   66 (223)
                      |++. |++++||.+-+.+.  .|++. ..|+++-|.+|.++ +. - .|++..+++ +.+++..           . .. 
T Consensus       160 i~~~-~~~~~vD~~q~~g~--~~id~~~~d~~~~s~~K~~g-p~-G-~g~l~~~~~-~~~~~~~~~~p~~~~~~~~~~~~  232 (361)
T 3m5u_A          160 YPKT-KTPLIVDASSDFFS--RKVDFSNIALFYGGVQKNAG-IS-G-LSCIFIRKD-MLERSKNKQIPSMLNYLTHAENQ  232 (361)
T ss_dssp             CCCC-SSCEEEECGGGTTS--SCCCCTTEEEEEEETTTTSS-CT-T-CEEEEEEHH-HHHHHHTCCCCGGGCHHHHHHTT
T ss_pred             cccc-CCEEEEEcccccCC--CCCCcccCCEEEEechhccC-CC-c-cEEEEEcHH-HHhhhcCCCCCceeehHHHhhcC
Confidence            3454 99999999854332  33332 47999999999995 42 2 355656653 3333321           1 00 


Q ss_pred             hcCCCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEE
Q 027424           67 AEGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  140 (223)
Q Consensus        67 ~~g~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~s  140 (223)
                      ..-.+.+-...+-+..+++.+      ..+.++..+.+..+.+.|++.+.+..+..+     +.+        ...++++
T Consensus       233 ~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~-----~~~--------rs~~ivs  299 (361)
T 3m5u_A          233 SLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD-----KKD--------RSLMNVS  299 (361)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC-----GGG--------BCSSEEE
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC-----HHH--------cCCeEEE
Confidence            011233334455566666654      334466667777788888888865333221     111        1357999


Q ss_pred             EEeCC
Q 027424          141 FLTGS  145 (223)
Q Consensus       141 f~~~~  145 (223)
                      |.+.+
T Consensus       300 f~~~~  304 (361)
T 3m5u_A          300 FNIAK  304 (361)
T ss_dssp             EEESS
T ss_pred             EECCC
Confidence            99854

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=96.24  E-value=6e-05  Score=69.14  Aligned_cols=123  Identities=17%  Similarity=0.147  Sum_probs=65.6

Q ss_pred             CccccCCEEEEecCCCCCCCcCc---cc-CC--CcEEEecccccccCCcccceeEEEecChhHHHHHHH-----HHHhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRP---LE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----LQNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~p---l~-~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~-----~~~~~g   69 (223)
                      +|+++|+++|+|+++.  +-..+   .+ +|  .|++  +++|.++| +..+| +++++ +++.+.+..     ......
T Consensus       262 l~~~~g~llI~DEv~~--~r~g~~~a~~~~gv~pDi~--t~sK~lg~-G~piG-~v~~~-~~i~~~l~~~~~g~~~~~~T  334 (465)
T 2yky_A          262 EASRCGALLIFDEVMT--SRLSGGGAQEMLGISADLT--TLGKYIGG-GMSFG-AFGGR-RDLMERFDPARDGAFAHAGT  334 (465)
Confidence            5899999999999986  21111   11 13  4654  78999998 65554 45454 455555443     011111


Q ss_pred             CCCChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           70 SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      ...+|..+...+..|+.+..  ..++..++...+.+.|++..  .+  || +         ....++.|.++.|++.
T Consensus       335 ~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~--~~--~~-~---------~~~v~g~G~~~~i~~~  397 (465)
T 2yky_A          335 FNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIA--VE--NQ-A---------PLQFTGLGSLGTIHFS  397 (465)
Confidence            12456555555566665432  23444444444544444321  11  11 0         0113467889999884

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=97.05  E-value=0.01  Score=53.40  Aligned_cols=53  Identities=11%  Similarity=0.045  Sum_probs=35.9

Q ss_pred             CccccCCEEEEecCCCCCCCcC----c--c----cCCC-cEEEecccccccCCcccceeEEEec
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----P--L----ELGA-DIVMHSATKFIAGHSDVMAGVLAVK   53 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----p--l----~~GA-Divv~S~tK~l~G~~d~~~G~v~~~   53 (223)
                      +|+++++++++|+.+..-..-.    +  +    +.+- =++++|++|.++-.+..+|.+++..
T Consensus       218 ~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~  281 (420)
T 4h51_A          218 LMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLL  281 (420)
T ss_dssp             HHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred             HHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecc
Confidence            3678999999999984321110    1  1    1111 2889999999998888988766543

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=96.89  E-value=0.01  Score=55.12  Aligned_cols=58  Identities=10%  Similarity=0.089  Sum_probs=39.3

Q ss_pred             cccCCEEEEecCCCCCCC--cCccc--CCCcEEEecccccccCCcccceeEEEecChhHHHHH
Q 027424            3 HAHGALLLVDNSIMSPVL--SRPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL   61 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~~~--~~pl~--~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l   61 (223)
                      +++|++||+|++++....  ...+.  .+.+|++.|+||+++..|..+|. ++++++++.+++
T Consensus       277 ~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~-~~~~~~~l~~~l  338 (546)
T 2zy4_A          277 HRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGV-VAAHQQNVFDLA  338 (546)
T ss_dssp             TCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEE-EEEESSCHHHHH
T ss_pred             ccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEE-EEECCHHHHHHH
Confidence            789999999999864321  12222  25679999999999877777655 555554354444

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=96.50  E-value=0.0012  Score=64.66  Aligned_cols=171  Identities=13%  Similarity=0.161  Sum_probs=93.4

Q ss_pred             CccccCCEEEEecCCCC----C--CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH----hcCC
Q 027424            1 MAHAHGALLLVDNSIMS----P--VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN----AEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~--~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~----~~g~   70 (223)
                      +|+++|+++|+|+.+..    +  +.+.-...-.||++  +.|-++|.---+| +++++ +++.+.+.....    ..|.
T Consensus       624 lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiit--lsK~L~gG~~Plg-av~~~-~~i~~~~~~~~~~~~~~hg~  699 (831)
T 4a0g_A          624 ECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIAC--FAKLLTGGMVPLA-VTLAT-DAVFDSFSGDSKLKALLHGH  699 (831)
T ss_dssp             HHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEE--ECGGGGTTSSCCE-EEEEC-HHHHHTTCSSCGGGSCCCCC
T ss_pred             HHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEE--EecccccCccCcE-EEEEC-HHHHHHHhcccccccceeec
Confidence            47899999999997532    1  11111112358875  8899987213444 45454 455544321100    1222


Q ss_pred             --CCChHhHHHHHhcHHHHHHH--HHHHHhHH--------HHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCee
Q 027424           71 --GLAPFDCWICLRGVKTMALR--VEKQQDNA--------QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  138 (223)
Q Consensus        71 --~~sp~da~ll~~~l~tl~~R--~~~~~~na--------~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl  138 (223)
                        ..+|..|...+..|+.+...  .++..++.        ..+.+.++++|.|..|.                  |.|.|
T Consensus       700 T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr------------------g~Gl~  761 (831)
T 4a0g_A          700 SYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVV------------------VIGTL  761 (831)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE------------------EETTE
T ss_pred             CCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe------------------ecccE
Confidence              24677777777777766311  11111111        23455677788877665                  36888


Q ss_pred             EEEEeCCH--------HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCC
Q 027424          139 LSFLTGSL--------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIED  206 (223)
Q Consensus       139 ~sf~~~~~--------~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd  206 (223)
                      +.|++.+.        +.+.++.+.+.  ..|+        +..|                  ..+.|||+    +--|+
T Consensus       762 ~~iel~~~~~~~~~~~~~a~~~~~~l~--e~Gv--------~v~p------------------~g~~lrl~pp~~~t~e~  813 (831)
T 4a0g_A          762 FALELKADASNSGYASLYAKSLLIMLR--EDGI--------FTRP------------------LGNVIYLMCGPCTSPEI  813 (831)
T ss_dssp             EEEEEC---------CHHHHHHHHHHH--HTTE--------ECCC------------------BTTEEEEECCTTCCHHH
T ss_pred             EEEEEecCccccccchHHHHHHHHHHH--HCCc--------EEEe------------------cCCEEEEECCCCCCHHH
Confidence            99998422        12333333321  1111        1111                  12578887    55667


Q ss_pred             HHHHHHHHHHHHhcC
Q 027424          207 VNDLISDLDKALRTG  221 (223)
Q Consensus       207 ~~dL~~dl~~Al~~~  221 (223)
                      .+.+++-|+++|+..
T Consensus       814 id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          814 CRRLLTKLYKRLGEF  828 (831)
T ss_dssp             HHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888899999988765

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=96.46  E-value=0.0014  Score=58.14  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=58.1

Q ss_pred             CccccCCEEEEecCCCCCCC------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHH-hcCCC--
Q 027424            1 MAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGSG--   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~-~~g~~--   71 (223)
                      +|+++|++||+|++++ .+.      +.......|++  |++|.+++ +..+ |+++. ++++.+.+..... ..+.+  
T Consensus       228 l~~~~~~~li~DEv~~-g~~~g~~~~~~~~~~~~di~--t~sK~~~~-G~~~-G~~~~-~~~~~~~~~~~~~~~~~~t~~  301 (427)
T 3fq8_A          228 ITLEHDALLVFDEVIT-GFRIAYGGVQEKFGVTPDLT--TLGKIIGG-GLPV-GAYGG-KREIMQLVAPAGPMYQAGTLS  301 (427)
T ss_dssp             HHHHTTCEEEEECTTT-BTTTBTTHHHHHTTCCCSEE--EECGGGGT-TSSC-EEEEE-CHHHHTTBTTTSSBCCCCTTT
T ss_pred             HHHHcCCEEEEecccc-ccccCcchhhHhcCCCCChh--hhhhhhhC-Ccce-EEEEE-cHHHHHhhccCCCccccCCCC
Confidence            4789999999999986 321      11122234654  67799995 5444 55555 4555554432110 12222  


Q ss_pred             CChHhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHhc
Q 027424           72 LAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~~  107 (223)
                      .+|..+......++.+  ....++..++...+.+.|++
T Consensus       302 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~  339 (427)
T 3fq8_A          302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLA  339 (427)
T ss_dssp             TCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            3677666666777654  23345566666666666654

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=96.29  E-value=0.13  Score=45.74  Aligned_cols=99  Identities=12%  Similarity=0.012  Sum_probs=51.0

Q ss_pred             cCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhH------------HHHHHHHHHhcCCC
Q 027424            5 HGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL------------AKELYFLQNAEGSG   71 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~------------~~~l~~~~~~~g~~   71 (223)
                      +|++++||.+-+-+. ..+.-++  |+++-|.+|+++ +. - .|++.++++.+            +..........| +
T Consensus       191 ~g~~~~vDa~qs~g~~pidv~~~--~~~~~s~hK~lG-P~-G-~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~g-T  264 (386)
T 3qm2_A          191 PEVVVTADFSSTILSAPLDVSRY--GVIYAGAQKNIG-PA-G-LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFN-T  264 (386)
T ss_dssp             TTCCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTC-CT-T-EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------
T ss_pred             CCCEEEEEcccccCCCCCCcccc--CEEEEecccccC-CC-c-cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCC-C
Confidence            589999999864432 2232234  467899999995 43 2 35565665421            010000011122 2


Q ss_pred             CChHhHHHHHhcHHHHH------HHHHHHHhHHHHHHHHHhcCC
Q 027424           72 LAPFDCWICLRGVKTMA------LRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~------~R~~~~~~na~~la~~L~~~p  109 (223)
                      .+....+.+..+++.+.      .+.++..+.+..+.+.|++.+
T Consensus       265 p~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~  308 (386)
T 3qm2_A          265 PPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD  308 (386)
T ss_dssp             -CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            22233555666666543      333555566666667777653

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=95.33  E-value=0.011  Score=53.91  Aligned_cols=120  Identities=17%  Similarity=0.197  Sum_probs=67.8

Q ss_pred             CccccCCEEEEecCCCC----CCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--HhcCCCC--
Q 027424            1 MAHAHGALLLVDNSIMS----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGL--   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s----~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--~~~g~~~--   72 (223)
                      +|+++|++||+|+....    .+.+.-...-.||++  +.|.++|. .-+ |++.++ +++.+.+....  ...+.+.  
T Consensus       249 lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t--~gK~lggG-~Pi-ga~~~~-~ei~~~~~~~~~~~~h~~T~~g  323 (454)
T 4ao9_A          249 SATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT--LGKYIGGG-MSF-GAFGGR-ADVMALFDPRTGPLAHSGTFNN  323 (454)
T ss_dssp             HHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE--EEGGGGTT-SSC-EEEEEC-HHHHGGGCTTTCSCCCCCTTTT
T ss_pred             HHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE--eccccCCC-Ccc-eeeeeH-HHHHHHHhhccCCccccCCCCC
Confidence            48999999999998632    111211112258875  67999863 344 555454 45544332100  0123232  


Q ss_pred             ChHhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHh----cCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           73 APFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        73 sp~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      +|..+...+..|+.+  ....++..++...+.+.|+    ++|.+..|+                  |.|.|+.+++
T Consensus       324 nPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vr------------------g~G~m~gi~f  382 (454)
T 4ao9_A          324 NVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFT------------------GIGSLMNAHF  382 (454)
T ss_dssp             CHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEE------------------EETTEEEEES
T ss_pred             CHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEe------------------eeceEEEEEE
Confidence            577666666666665  2334555556666655554    355544444                  5788999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1y4ia1	397	c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci	4e-75
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	8e-68
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	5e-66
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	9e-66
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	9e-61
d1e5ea_	394	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	5e-60
d2ctza1	421	c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry	2e-59
d1cs1a_	384	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E	1e-57
d1pffa_	331	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	1e-54
d1cl1a_	391	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche	2e-41
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	2e-20
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	7e-06
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	1e-04

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

 Score =  230 bits (587), Expect = 4e-75
 Identities = 93/221 (42%), Positives = 142/221 (64%), Gaps = 2/221 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +AH  GALL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + + 
Sbjct: 173 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQA 232

Query: 61  -LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
               L++  G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL
Sbjct: 233 RFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGL 292

Query: 120 PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
             HP +EL   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M
Sbjct: 293 SSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 352

Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           +H+ +  E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 353 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 393

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score =  211 bits (537), Expect = 8e-68
 Identities = 87/220 (39%), Positives = 139/220 (63%), Gaps = 2/220 (0%)

Query: 2   AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 61
           A  HGA ++VDN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++      + +  
Sbjct: 170 ARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIR 229

Query: 62  Y-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
              L++  G+ L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL 
Sbjct: 230 LQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLA 289

Query: 121 EHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
             P + L   Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+
Sbjct: 290 SFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMT 349

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           H+S   E R   G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 350 HSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 389

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  206 bits (524), Expect = 5e-66
 Identities = 193/223 (86%), Positives = 212/223 (95%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           MAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE
Sbjct: 158 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE 217

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           +YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP
Sbjct: 218 VYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLP 277

Query: 121 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 180
           +HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSH
Sbjct: 278 DHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 337

Query: 181 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 223
           ASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD A +T PL
Sbjct: 338 ASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 380

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  206 bits (524), Expect = 9e-66
 Identities = 83/217 (38%), Positives = 127/217 (58%), Gaps = 2/217 (0%)

Query: 3   HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY 62
           H  GAL+ +D +  +P+  + L LGAD+V+HSATKF+ GH+DV+AG       +L  E+ 
Sbjct: 180 HEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGC-ISGPLKLVSEIR 238

Query: 63  FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 122
            L +  G  L P   ++ +RG+KT+ LRV++Q   A ++AE L +HP+V+ V Y GL  H
Sbjct: 239 NLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSH 298

Query: 123 PGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 181
           P H +   Q  G G  +SF + G L  +   V+  K   I  SFG  +S++  P  MS+ 
Sbjct: 299 PEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYW 358

Query: 182 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
            +    R   G+ ++LVR S G+ED +DL +D+ +AL
Sbjct: 359 DLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQAL 395

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  193 bits (490), Expect = 9e-61
 Identities = 92/221 (41%), Positives = 133/221 (60%), Gaps = 4/221 (1%)

Query: 3   HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY 62
                +L+VDN+ +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L 
Sbjct: 169 AGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ 228

Query: 63  FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 122
           FLQNA G+  +PFD W+  RG+KT+ LRV +   +A KIAEFLA+             + 
Sbjct: 229 FLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKT 288

Query: 123 ---PGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
                  L   +    G ++SF + G    +     +T+ F++  S G ++SL+ +P  M
Sbjct: 289 HPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVM 348

Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           +H  IP E R+A G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 349 THGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALK 389

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

 Score =  191 bits (485), Expect = 5e-60
 Identities = 83/220 (37%), Positives = 143/220 (65%), Gaps = 2/220 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
                G L++ DN+  SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L + 
Sbjct: 170 AHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQI 229

Query: 61  LY-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
               +++  GS ++P D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G 
Sbjct: 230 RMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGF 289

Query: 120 PEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 178
            +H GH++   Q +  GS+++F+       +K +++  K  ++ VS G  +SLI  P  M
Sbjct: 290 EDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASM 349

Query: 179 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           +HA +P E R+A G+T+ ++R+SVGIED ++LI+D  + L
Sbjct: 350 THAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGL 389

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

 Score =  190 bits (483), Expect = 2e-59
 Identities = 82/252 (32%), Positives = 123/252 (48%), Gaps = 34/252 (13%)

Query: 1   MAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 59
            A   G  L+VDN+  M   L RPL  GA +V HS TK++ GH  V+AG +   G    +
Sbjct: 169 AAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWE 228

Query: 60  ------------------------ELYFLQNAE-------GSGLAPFDCWICLRGVKTMA 88
                                   EL F+  A        G  L PF+ W+ L G++T++
Sbjct: 229 GGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS 288

Query: 89  LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSF-LTGSL 146
           LR E+  +N   +A +L   P+V  VNY GLP HP H+      KG  G+VL+F L G  
Sbjct: 289 LRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGY 348

Query: 147 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED 206
             +K  +   K  S   + G  ++L   P   +H+ +  E +   G++ ++VR+SVG+E 
Sbjct: 349 EAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEH 408

Query: 207 VNDLISDLDKAL 218
           V DL ++L +AL
Sbjct: 409 VEDLKAELKEAL 420

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

 Score =  185 bits (469), Expect = 1e-57
 Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 1/220 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
           +A   GA+ +VDN+ +SP L  PL LGAD+V+HS TK++ GHSDV+AGV+  K   +  E
Sbjct: 160 LAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTE 219

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
           L +  N  G     FD ++ LRG++T+  R+E  Q NAQ I ++L + P VKK+ +  LP
Sbjct: 220 LAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLP 279

Query: 121 EHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
           E+ GHE+   Q KG G++LSF   G     +  +     F++  S G V+SLIS    M+
Sbjct: 280 ENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMT 339

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 219
           HA +  E R A G++E L+RIS GIED  DLI+DL+   R
Sbjct: 340 HAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFR 379

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

 Score =  175 bits (444), Expect = 1e-54
 Identities = 98/219 (44%), Positives = 146/219 (66%), Gaps = 1/219 (0%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
                  L++VDN+  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK 
Sbjct: 109 ARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKV 168

Query: 61  -LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 119
               +++  G+ ++P D W+  RG  T+ +RV++  +NAQK+AEFL  H  VKKV Y GL
Sbjct: 169 KSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGL 228

Query: 120 PEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 179
           P+HPGHE+   Q K  GS+++F    L  +K V++     S+ VS G  +SLI  P  M+
Sbjct: 229 PDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMT 288

Query: 180 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
           HA +P E R+A GLT++L+R+SVG E+V D+I DL +AL
Sbjct: 289 HAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQAL 327

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

 Score =  142 bits (359), Expect = 2e-41
 Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 1   MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 60
            +    A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G          + 
Sbjct: 170 RSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQL 229

Query: 61  LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 120
                   G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP
Sbjct: 230 REN-AYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALP 288

Query: 121 EHPGHELHYSQAKGAGSVLSFL---TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 177
              GHE       G+  + SF+     +     + ++    FS+  S+G  +SLI     
Sbjct: 289 GSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQP 348

Query: 178 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 218
              A+I    +     +  L+R+ +G+EDV+DLI+DLD   
Sbjct: 349 EHIAAI--RPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGF 387

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 85.7 bits (211), Expect = 2e-20
 Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 20/210 (9%)

Query: 1   MAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 55
            A    A++ VD++  + V         L+LGAD+V+ S  K + G    +        +
Sbjct: 159 TAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLL----AGKK 214

Query: 56  RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKIAEFLASHPRVKKV 114
            L  ++Y      G    P       R +K   L R+ K  + A+            +  
Sbjct: 215 ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELK 274

Query: 115 NYAGLPEHPGHEL-HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLI 172
                              K      +  +   + +  ++++     +IT        + 
Sbjct: 275 AIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITIT--------VA 326

Query: 173 SMPCFMSHASIPVEVRQARGLTEDLVRISV 202
            MP       I +  R A  + ++ +  ++
Sbjct: 327 GMPGASKSLRIDLTSRDAERIDDNYIIKAI 356

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 43.8 bits (102), Expect = 7e-06
 Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 34/224 (15%)

Query: 1   MAHAHGALLLVDNSIMSPV------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG 54
           +   +    +++ +           L +  +   D V+ S+ K +     +  G++    
Sbjct: 236 ICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP--IGGGLVYSTD 293

Query: 55  ERLAKELYFLQNAEGSGLAPFDCWI--CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK 112
               KE+        S     +  +     G K     V+ Q+++ + + E L      K
Sbjct: 294 AEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLS--K 351

Query: 113 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLI 172
           K     L          S       + + L          ++ T +F             
Sbjct: 352 KTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFG-----------N 400

Query: 173 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 216
                 +H  I +    A G+           ED+ + +S L+K
Sbjct: 401 CYLGTYTHDYIVMNA--AIGVRT---------EDIVNSVSKLEK 433

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 31/232 (13%), Positives = 63/232 (27%), Gaps = 26/232 (11%)

Query: 1   MAHAHGALLLVDN--SIMSPVLSRPLEL-----GADIVMHSATKFIAGHSDVMAGVLAVK 53
           +   +    +V+N   + S      ++        D  + S  K           ++A  
Sbjct: 219 ICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGA--IIAGF 276

Query: 54  GERLAKELYFLQNAEGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRV 111
            E   +++  +     S     D  I L   G       ++++++    ++  L      
Sbjct: 277 NEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEA 336

Query: 112 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL 171
                   P +P       +        +       L    V   +   +          
Sbjct: 337 HNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSG-- 394

Query: 172 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR 219
            +   FMSHA                +  +  I    +DV+  I  LDK L 
Sbjct: 395 HTFRGFMSHADNY---------PCAYLNAAAAIGMKMQDVDLFIKRLDKCLN 437

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.63
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.01
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.0
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	98.97
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.96
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	98.92
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	98.79
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	98.71
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	98.69
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	98.66
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	98.63
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	98.62
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	98.51
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	98.51
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	98.47
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	98.46
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	98.46
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	98.41
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	98.39
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	98.38
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	98.37
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	98.36
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	98.36
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	98.31
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	98.28
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	98.25
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	98.25
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	98.25
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	98.23
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	98.22
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	98.19
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	98.18
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	98.18
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	98.17
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	98.15
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	98.13
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	98.1
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	98.08
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	98.06
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	98.06
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	98.05
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	97.97
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	97.9
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	97.89
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	97.87
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	97.86
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	97.72
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	97.72
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	97.7
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	97.65
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	97.64
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	97.61
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	97.6
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	97.56
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	97.55
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	97.53
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	97.51
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	97.49
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	97.47
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	97.44
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	97.43
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	97.42
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	97.36
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	97.35
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	97.33
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	97.1
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	96.88
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	96.85
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	96.76
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	96.53
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	95.78
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	95.66
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	95.41
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	94.71
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	93.6

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-74  Score=520.56  Aligned_cols=222  Identities=43%  Similarity=0.681  Sum_probs=215.9

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++||||||+||++++|+++||||||||+|||++||||+++|+++.+++.+.++++..+..+|.+++|+|||++
T Consensus       160 ia~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll  239 (384)
T d1cs1a_         160 LAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLL  239 (384)
T ss_dssp             HHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHH
T ss_pred             hhhhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHH
Confidence            48999999999999999999999999999999999999999999999999998888888888888999999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +|||+||.+||++|++||++||+||++||.|++|+||||++||+|+++++|++|+|||+||++ ++.+++.+|+|+|++|
T Consensus       240 ~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~  319 (384)
T d1cs1a_         240 LRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLF  319 (384)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSS
T ss_pred             hhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999 7888999999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  222 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~  222 (223)
                      .+++||||++||+++|++++|+.+++|+|+..||++++|||||||||+||||+||+|||+++.
T Consensus       320 ~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~aa~  382 (384)
T d1cs1a_         320 TLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN  382 (384)
T ss_dssp             EEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred             eeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999764

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=4.3e-74  Score=518.70  Aligned_cols=221  Identities=42%  Similarity=0.764  Sum_probs=209.8

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHH-HHHHHHHhcCCCCChHhHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWI   79 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~-~l~~~~~~~g~~~sp~da~l   79 (223)
                      +||++|++++|||||+||++|+|+++||||||||+|||++||+|++||+++++++.+.+ ++..+++.+|.+++|+|||+
T Consensus       173 iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l  252 (397)
T d1y4ia1         173 IAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWL  252 (397)
T ss_dssp             HHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHH
T ss_pred             HhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHH
Confidence            48999999999999999999999999999999999999999999999999887655433 34456777899999999999


Q ss_pred             HHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCc
Q 027424           80 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKY  158 (223)
Q Consensus        80 l~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l  158 (223)
                      ++|||+||.+||++|++||++||+||++||.|++|+||||++||+|+++++|++|+||||||++ ++.+.+++|+++|++
T Consensus       253 ~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l  332 (397)
T d1y4ia1         253 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVEL  332 (397)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSS
T ss_pred             HHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999 567788999999999


Q ss_pred             ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          159 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       159 ~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      |.+++||||++|||++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||+++
T Consensus       333 ~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~a  395 (397)
T d1y4ia1         333 CLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  395 (397)
T ss_dssp             SEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             cceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999975

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4e-74  Score=516.93  Aligned_cols=223  Identities=87%  Similarity=1.310  Sum_probs=218.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++||||||++|++++|+++||||||||+|||++||+|+++|+++.+++.+.++++..+...|..++|+|||++
T Consensus       158 iA~~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll  237 (380)
T d1ibja_         158 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLC  237 (380)
T ss_dssp             HHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred             HHHHcCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999888888899999999999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +|||+||.+||++|++||+++|+||++||.|++|+||||++||+|+++++|++++|||+||++++.+.+++|+|+|++|.
T Consensus       238 ~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~  317 (380)
T d1ibja_         238 LRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFS  317 (380)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSE
T ss_pred             HhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhCCcCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  223 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~~~  223 (223)
                      +++|||+++||+++|++++|+.+++|+|++.||++++|||||||||+||||+||+|||++.|+
T Consensus       318 ~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l~~  380 (380)
T d1ibja_         318 IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL  380 (380)
T ss_dssp             ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred             EeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999999999999985

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=7.9e-74  Score=517.32  Aligned_cols=220  Identities=38%  Similarity=0.647  Sum_probs=212.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +||++|+++||||||+||++++||++||||||||+|||++||+|+++|+++. ++++..+++..+..+|.+++|+|||++
T Consensus       178 ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~-~~~~~~~~~~~~~~~G~~l~p~~a~ll  256 (398)
T d1qgna_         178 LCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLI  256 (398)
T ss_dssp             HHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred             HHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcc-hhhhhhhhhhhcccCCCcCCHHHHHHH
Confidence            4899999999999999999999999999999999999999999999998865 556777788888999999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +|||+||.+||++|++||.+||+||++||+|++|+||||++||+|+++++|++|+|||+||++ ++.+++++|+++|++|
T Consensus       257 ~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~  336 (398)
T d1qgna_         257 IRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIP  336 (398)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSS
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999998 6889999999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      .+++||||++||+++|++++|+.+++|+|++.||++++|||||||||+||||+||+|||++.
T Consensus       337 ~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         337 YIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI  398 (398)
T ss_dssp             EECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred             eeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999863

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=4.9e-73  Score=512.09  Aligned_cols=220  Identities=38%  Similarity=0.734  Sum_probs=205.5

Q ss_pred             ccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHH-HHHHHHHhcCCCCChHhHHHH
Q 027424            2 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~-~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +|++|+++||||||+||++|+|+++||||||||+|||++||+|+++|+++++++.+.. ++..+++.+|.+++|+|||++
T Consensus       171 ~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll  250 (394)
T d1e5ea_         171 HSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLI  250 (394)
T ss_dssp             HTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHH
T ss_pred             ccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHH
Confidence            3568999999999999999999999999999999999999999999999876544322 222335678999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      +|||+||.+||++|++||.+||+||++||+|++|+|||+++||+|+++++|++|+|||+||++ ++.+++.+|+++|++|
T Consensus       251 ~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~  330 (394)
T d1e5ea_         251 TRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLI  330 (394)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSS
T ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999998 5668899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      .+++||||++||+++|++++|+.+++|+|++.||++++|||||||||+||||+||+|||+++
T Consensus       331 ~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l  392 (394)
T d1e5ea_         331 TLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDAL  392 (394)
T ss_dssp             EESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999863

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=2.1e-73  Score=513.70  Aligned_cols=221  Identities=39%  Similarity=0.688  Sum_probs=194.1

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHH-HHHHHHHhcCCCCChHhHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWI   79 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~-~l~~~~~~~g~~~sp~da~l   79 (223)
                      +||++|++++|||||+||++|+|+++|||||+||+|||++||||+++|+++++++.+.+ ++...++.+|.+++|+|||+
T Consensus       169 ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~l  248 (392)
T d1gc0a_         169 IARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAAL  248 (392)
T ss_dssp             HHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHH
T ss_pred             HHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHH
Confidence            58999999999999999999999999999999999999999999999999877654433 44566778999999999999


Q ss_pred             HHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe-CCHHHHHHHHhhcCc
Q 027424           80 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKY  158 (223)
Q Consensus        80 l~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~-~~~~~~~~f~~~l~l  158 (223)
                      ++|||+||.+||++|++||++||+||++||.|++|+|||+++||+|+++++|+.++|||+||++ ++.+.+++|+++|++
T Consensus       249 l~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l  328 (392)
T d1gc0a_         249 LMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQL  328 (392)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSS
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999 577889999999999


Q ss_pred             ceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          159 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       159 ~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      |.+++||||++||+++|++++|+.+++|+|++.||++++|||||||||++|||+||+|||+++
T Consensus       329 ~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~aa  391 (392)
T d1gc0a_         329 FSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  391 (392)
T ss_dssp             SEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ceEeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeeeCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999864

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=100.00  E-value=6.6e-73  Score=501.17  Aligned_cols=220  Identities=45%  Similarity=0.757  Sum_probs=207.7

Q ss_pred             ccccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHH-HHHHHHHhcCCCCChHhHHHH
Q 027424            2 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWIC   80 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~-~l~~~~~~~g~~~sp~da~ll   80 (223)
                      +|++|+++||||||+||++++|+++||||||||+|||++||+|+++|+++.+++.+.. +.+..+..+|..++|+|||++
T Consensus       110 a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll  189 (331)
T d1pffa_         110 RKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLI  189 (331)
T ss_dssp             TTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHH
T ss_pred             hcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999887655433 222234567999999999999


Q ss_pred             HhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcce
Q 027424           81 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  160 (223)
Q Consensus        81 ~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~  160 (223)
                      +|||+|+..||+||++||.+||+||++||.|++|+|||+++||+|+++++++.|+|||+||++++.+.+.+|+|+|++|.
T Consensus       190 ~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~lf~  269 (331)
T d1pffa_         190 TRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVS  269 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          161 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       161 ~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      +++|||+++||+++|++++|+.+++|+|+..||++++|||||||||+||||+||+|||++.
T Consensus       270 ~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGlE~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         270 LAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             ECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             ecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeeeCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999874

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-71  Score=505.16  Aligned_cols=219  Identities=35%  Similarity=0.587  Sum_probs=202.9

Q ss_pred             CccccCCEEEEecCCC-CCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHH---------------------
Q 027424            1 MAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA---------------------   58 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~-s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~---------------------   58 (223)
                      +||++|+++||||||+ +|++|+||++||||||||+|||++||||++||+|+.+++..+                     
T Consensus       169 iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~  248 (421)
T d2ctza1         169 AAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLT  248 (421)
T ss_dssp             HHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHH
T ss_pred             HHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHH
Confidence            4899999999999998 799999999999999999999999999999999987654211                     


Q ss_pred             ---------HH-HHHHHHhcCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHH
Q 027424           59 ---------KE-LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  128 (223)
Q Consensus        59 ---------~~-l~~~~~~~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  128 (223)
                               .+ .....+.+|.++||+||||++|||+||.+||++|++||.+||+||++||.|++|+||||++||+|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a  328 (421)
T d2ctza1         249 EAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRA  328 (421)
T ss_dssp             HHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHH
Confidence                     11 11233458999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCC-CCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC
Q 027424          129 YSQAKG-AGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED  206 (223)
Q Consensus       129 ~~~~~g-~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd  206 (223)
                      ++|+.| +|+|+||++ ++.+.+++|+++|++|.+++||||++||+++|++++|+.+++|+|++.||++++|||||||||
T Consensus       329 ~~~~~g~~G~~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlSvGlEd  408 (421)
T d2ctza1         329 QKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEH  408 (421)
T ss_dssp             HHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSC
T ss_pred             HHhcCCCCceEEEEEecCCHHHHHHHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEEeccCC
Confidence            999975 799999999 577889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027424          207 VNDLISDLDKALR  219 (223)
Q Consensus       207 ~~dL~~dl~~Al~  219 (223)
                      +||||+||+|||+
T Consensus       409 ~eDLi~DL~qALa  421 (421)
T d2ctza1         409 VEDLKAELKEALA  421 (421)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999985

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-71  Score=501.71  Aligned_cols=218  Identities=46%  Similarity=0.774  Sum_probs=210.6

Q ss_pred             ccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHHHhc
Q 027424            4 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG   83 (223)
Q Consensus         4 ~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll~~~   83 (223)
                      ++|+++||||||+||++|+||++||||||||+|||++||+|+++|+|+.+++.++++++..+..+|.+++|+|||+++||
T Consensus       170 ~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rg  249 (393)
T d1n8pa_         170 GQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRG  249 (393)
T ss_dssp             TTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             cCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhC
Confidence            78999999999999999999999999999999999999999999999888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhcC-CCeeEEEcCCCCCCcchHHHHhhhC--CCCeeEEEEe-CCHHHHHHHHhhcCcc
Q 027424           84 VKTMALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLT-GSLALSKHVVETTKYF  159 (223)
Q Consensus        84 l~tl~~R~~~~~~na~~la~~L~~~-p~v~~V~yP~l~~~~~~~~~~~~~~--g~ggl~sf~~-~~~~~~~~f~~~l~l~  159 (223)
                      |+||.+||++|++||++||+||++| |.|++|+||++++||+|+++++|+.  |+|||+||++ ++.+++++|+++|++|
T Consensus       250 l~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~f~~~l~l~  329 (393)
T d1n8pa_         250 LKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLF  329 (393)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSS
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHHHHHhCCcc
Confidence            9999999999999999999999987 8899999999999999999999875  6799999999 6888899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      .+++||||++||+++|++++|+.+++++|+..||++++|||||||||+||||+||+|||+++
T Consensus       330 ~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~a  391 (393)
T d1n8pa_         330 TLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             EECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             eecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999975

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-68  Score=481.89  Aligned_cols=216  Identities=30%  Similarity=0.487  Sum_probs=202.1

Q ss_pred             cccCCEEEEecCCCCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHHHh
Q 027424            3 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR   82 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll~~   82 (223)
                      +++|+++||||||+||++++||++|||||+||+|||++||+|++||+++.++ ++++++...+..+|.+++|++||+++|
T Consensus       172 ~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~-~~~~~~~~~~~~~G~~~~p~~a~ll~r  250 (391)
T d1cl1a_         172 VVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNA-RCWEQLRENAYLMGQMVDADTAYITSR  250 (391)
T ss_dssp             HCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECT-TTHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             ccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceeccc-cccccchhhhhcccccCCchhhhhhhc
Confidence            3469999999999999999999999999999999999999999999998766 466777778888999999999999999


Q ss_pred             cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC---CHHHHHHHHhhcCcc
Q 027424           83 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---SLALSKHVVETTKYF  159 (223)
Q Consensus        83 ~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~---~~~~~~~f~~~l~l~  159 (223)
                      ||+||.+||++|++||.+||+||++||.|++|+|||+++||+|+++++|++|+||++||++.   +.+++.+|+|+|++|
T Consensus       251 gl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~d~L~l~  330 (391)
T d1cl1a_         251 GLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLF  330 (391)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHHHcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999983   668899999999999


Q ss_pred             eeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhcC
Q 027424          160 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  221 (223)
Q Consensus       160 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~~  221 (223)
                      .+++||||++||+++|++++|..+.++  ++.||++++|||||||||+||||+||+|||++.
T Consensus       331 ~~a~SlG~~~SLi~~~~~~~~~~~~~~--~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         331 SMAYSWGGYESLILANQPEHIAAIRPQ--GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  390 (391)
T ss_dssp             BCCSCCCSSSCEEEEECHHHHHHTSTT--CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred             eEeeCCCCCccceeCCcccccccCCch--HhcCCCcCEEEEEeccCCHHHHHHHHHHHHHhh
Confidence            999999999999999998888766543  568999999999999999999999999999874

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.63  E-value=9.1e-19  Score=153.96  Aligned_cols=104  Identities=26%  Similarity=0.322  Sum_probs=87.2

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      +||++|+++++|++++.+++     ..+++.|+|++++|.||+++|+.   +|+++++ +++.++++.....+|.+++|+
T Consensus       159 ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~---~G~i~~~-~~~i~~~~~~~~~~g~~~~~~  234 (366)
T d2aeua1         159 TAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR---GGLLAGK-KELVDKIYIEGTKFGLEAQPP  234 (366)
T ss_dssp             HHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCS---CEEEEEE-HHHHHHHHHHHHTTTCBCCHH
T ss_pred             HhccCcEEEEEecCccccccccccCCCHhhcCceEEEecccccccccc---eeEEEec-HHHHHHHHHHHhcccccCCHH
Confidence            48999999999999876532     34678899999999999999984   6877654 578888888888889899999


Q ss_pred             hHHHHHhcHHHH-HHHHHHHHhHHHHHHHHHhcC
Q 027424           76 DCWICLRGVKTM-ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        76 da~ll~~~l~tl-~~R~~~~~~na~~la~~L~~~  108 (223)
                      .+|.++++|+++ ..||+++.+|++.+++++.++
T Consensus       235 ~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~  268 (366)
T d2aeua1         235 LLAGIYRALKNFNLERIRKAFERAKNFDLSKIEK  268 (366)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999998 459999999998877766654

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=3.6e-09  Score=92.78  Aligned_cols=182  Identities=20%  Similarity=0.187  Sum_probs=107.3

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH----------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF----------------   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~----------------   63 (223)
                      +||++|++++||.|.+.|.. .+.-++|+|+++.|++|+++.++   .|++.++++ +.+.+..                
T Consensus       188 ~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G---~g~l~v~~~-~~~~~~~~~~~~~~~~~~~~~~~  263 (405)
T d1jf9a_         188 LAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG---IGILYVKEA-LLQEMPPWEGGGSMIATVSLSEG  263 (405)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSS---CEEEEECHH-HHTTCCCSSCSSSSEEECCTTTC
T ss_pred             HHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCC---ceeeeechh-hhcccCcccccccccCccccccc
Confidence            47899999999999988753 56667899999999999987665   456666653 2111100                


Q ss_pred             ------HHHhcCCCCChHhHHHHHhcHHHHH-HHHHHHHhHHHH----HHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           64 ------LQNAEGSGLAPFDCWICLRGVKTMA-LRVEKQQDNAQK----IAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        64 ------~~~~~g~~~sp~da~ll~~~l~tl~-~R~~~~~~na~~----la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                            ..+....+.+....+.+..+++-+. ..+++..+....    +.+.++..+.+ .+.-|.              
T Consensus       264 ~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~-~~~~~~--------------  328 (405)
T d1jf9a_         264 TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDL-TLYGPQ--------------  328 (405)
T ss_dssp             CEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTE-EEESCT--------------
T ss_pred             cccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcc-cccCCc--------------
Confidence                  0011122333333444555555431 223333333333    44455556654 444341              


Q ss_pred             CCCCeeEEEEeC--CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CC
Q 027424          133 KGAGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----ED  206 (223)
Q Consensus       133 ~g~ggl~sf~~~--~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed  206 (223)
                       ..+++++|.+.  ..+....+++..++   .++.|..-              +.......| .++.||+|+|+    ||
T Consensus       329 -~r~~ivsf~~~~~~~~~~~~~L~~~gI---~v~~G~~c--------------~~~~~~~~~-~~g~iRiS~~~ynt~eD  389 (405)
T d1jf9a_         329 -NRLGVIAFNLGKHHAYDVGSFLDNYGI---AVRTGHHC--------------AMPLMAYYN-VPAMCRASLAMYNTHEE  389 (405)
T ss_dssp             -TCCSEEEEEETTCCHHHHHHHHHHTTE---ECEEECTT--------------CHHHHHHTT-CSCEEEEECCTTCCHHH
T ss_pred             -CcCcEEEEEcCCCCHHHHHHHHHHCCc---EEEccchh--------------hhhHHHhcC-CCCEEEEECCCCCCHHH
Confidence             14689999984  34555566665544   34555321              112223345 36899999998    78


Q ss_pred             HHHHHHHHHHHHhc
Q 027424          207 VNDLISDLDKALRT  220 (223)
Q Consensus       207 ~~dL~~dl~~Al~~  220 (223)
                      ++.+++.|++.++.
T Consensus       390 id~l~~~l~~i~r~  403 (405)
T d1jf9a_         390 VDRLVTGLQRIHRL  403 (405)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888877653

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.00  E-value=6.7e-10  Score=99.75  Aligned_cols=184  Identities=18%  Similarity=0.188  Sum_probs=118.5

Q ss_pred             CccccCCEEEEecCCC-----CCCCcCcccCCCcEEEecccccccCCcccceeEEEecCh--------------hHHHHH
Q 027424            1 MAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~-----s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~--------------~~~~~l   61 (223)
                      ||++.|++|++|-++-     +..+++|++ +||||..|+||+|.|+   .||+|.++.+              ++.+++
T Consensus       203 Iad~vga~l~~D~aH~aGLIA~g~~~sPl~-~aDvvt~tTHKtlrGP---rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i  278 (470)
T d1rv3a_         203 IADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVVTTTTHKTLRGC---RAGMIFYRRGVRSVDPKTGKEILYNLESLI  278 (470)
T ss_dssp             HHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEEEEESSGGGCCC---SCEEEEEECSBCC-------CCBCCHHHHH
T ss_pred             HHhccCCeEEecchhhhhhccccccCChhh-eeeeeeeehhhhccCC---cceEEEEccccccccccccchhHHHHHHHH
Confidence            5788999999999974     456899998 5899999999999999   6999988764              355555


Q ss_pred             HHHHHhcCCCCChHhHHHH--HhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCC
Q 027424           62 YFLQNAEGSGLAPFDCWIC--LRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  134 (223)
Q Consensus        62 ~~~~~~~g~~~sp~da~ll--~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g  134 (223)
                      .... ..|..-+|......  .-+++     .+....++..+||+.||+.|.++..  +|..=|   +..|         
T Consensus       279 ~~av-FPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~--~v~~gg---TdnH---------  343 (470)
T d1rv3a_         279 NSAV-FPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGY--KIVTGG---SDNH---------  343 (470)
T ss_dssp             HHHH-TTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTC--EEGGGS---CSSS---------
T ss_pred             hhhc-CccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCc--eeccCC---CCCc---------
Confidence            4432 23322244222211  11222     3567789999999999999999863  554322   2222         


Q ss_pred             CCeeEEEEe---C-CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 027424          135 AGSVLSFLT---G-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  210 (223)
Q Consensus       135 ~ggl~sf~~---~-~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL  210 (223)
                         ++-+++   + +...+++.++..++.....++.+..+    |..++  .      .+.| ++.+.|...+-+|.++|
T Consensus       344 ---lvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~----~~~~s--G------iRiG-T~alTtrG~~e~dm~~i  407 (470)
T d1rv3a_         344 ---LILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKS----ALRPS--G------LRLG-TPALTSRGLLEKDFQKV  407 (470)
T ss_dssp             ---EEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSC----TTSCC--E------EEEE-CHHHHHTTCCHHHHHHH
T ss_pred             ---eEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCC----CCCCC--e------eEec-CHHHHhCCCCHHHHHHH
Confidence               444443   1 45568888999998766666654432    11100  0      1222 33334444566888899


Q ss_pred             HHHHHHHHh
Q 027424          211 ISDLDKALR  219 (223)
Q Consensus       211 ~~dl~~Al~  219 (223)
                      .+-+.+||+
T Consensus       408 A~~I~~~l~  416 (470)
T d1rv3a_         408 AHFIHRGIE  416 (470)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988888885

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.97  E-value=1.4e-09  Score=95.95  Aligned_cols=184  Identities=18%  Similarity=0.215  Sum_probs=117.1

Q ss_pred             CccccCCEEEEecCC-----CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            1 MAHAHGALLLVDNSI-----MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         1 ia~~~g~~lvVDnT~-----~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      ||++.|++|++|-++     ++...++|++ +||||..|+||+|.|+   .||++.++ +++.+++.... ..|..-+|.
T Consensus       186 Iad~vga~l~~D~aH~~GLIa~g~~~~P~~-~aDvvt~tThKtlrGP---rgg~I~~~-~~~~~~i~~av-fPg~qggp~  259 (405)
T d1kl1a_         186 IADEVGAYLMVDMAHIAGLVAAGLHPNPVP-YAHFVTTTTHKTLRGP---RGGMILCQ-EQFAKQIDKAI-FPGIQGGPL  259 (405)
T ss_dssp             HHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSEEEEESSSTTCCC---SCEEEEEC-HHHHHHHHHHH-TTTTCSSCC
T ss_pred             HHhhhCCEEecchhhHhhhhhhhhcCChhh-hhhheeccccccccCC---CCceEEec-chhHHHHHhhh-CcccccCcc
Confidence            578899999999997     4467899998 5999999999999999   69988876 46666665432 233333442


Q ss_pred             hHHHH--HhcH-----HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe---C-
Q 027424           76 DCWIC--LRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT---G-  144 (223)
Q Consensus        76 da~ll--~~~l-----~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~---~-  144 (223)
                      ...+.  ..++     +.+....++..+||+.||+.|.++..  +|.- |.  +..            -++-+++   + 
T Consensus       260 ~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~--~vv~-gg--Td~------------H~vlvdl~~~~~  322 (405)
T d1kl1a_         260 MHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF--TLVS-GG--TDN------------HLLLVDLRPQQL  322 (405)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC--EEGG-GS--CSS------------SEEEEECGGGTC
T ss_pred             hhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCc--eeec-CC--Ccc------------ceeeccccccCC
Confidence            22211  1122     23467789999999999999998763  4432 22  122            2444444   1 


Q ss_pred             CHHHHHHHHhhcCcceeccccCCC-CCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          145 SLALSKHVVETTKYFSITVSFGSV-KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       145 ~~~~~~~f~~~l~l~~~~~s~G~~-~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      +...+++.++..++.....++.+- ++    |..++  .      .+.| ++.+.|...+-+|.+.|.+-+.++|+.
T Consensus       323 ~g~~ae~~Le~agI~~Nkn~iP~d~~~----~~~~S--G------iRiG-T~a~TtrG~~e~dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         323 TGKTAEKVLDEVGITVNKNTIPYDPES----PFVTS--G------IRIG-TAAVTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             CHHHHHHHHHHHTEECEECCCTTCSSC----TTTCS--E------EEEE-CHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHcCeEEcCCcCCCCCCC----CCCCC--c------eeec-CHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            345677789999987666555442 22    11100  0      0122 333333346678888898888888864

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.96  E-value=1.3e-09  Score=97.58  Aligned_cols=184  Identities=16%  Similarity=0.158  Sum_probs=117.8

Q ss_pred             CccccCCEEEEecCC-----CCCCCcCcccCCCcEEEecccccccCCcccceeEEEecCh--------------hHHHHH
Q 027424            1 MAHAHGALLLVDNSI-----MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~-----~s~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~--------------~~~~~l   61 (223)
                      ||++.|++|++|-++     ++...++|+++ ||||..|+||+|.|+   .||++.++.+              ++.+++
T Consensus       199 Iad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~tTHKTlrGP---rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i  274 (463)
T d2a7va1         199 VCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRI  274 (463)
T ss_dssp             HHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHH
T ss_pred             HhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhchhhhhhcCC---CceEEEEcccccccccccCccchhHHHHHh
Confidence            578999999999996     45678999985 899999999999999   6999988763              455666


Q ss_pred             HHHHHhcCCCCChHhHHHH--HhcH-----HHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCC
Q 027424           62 YFLQNAEGSGLAPFDCWIC--LRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  134 (223)
Q Consensus        62 ~~~~~~~g~~~sp~da~ll--~~~l-----~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g  134 (223)
                      .... ..|..-+|......  .-++     ..+....++..+||+.||+.|.++..  +|..-|   +..|         
T Consensus       275 ~~av-FPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~--~vv~gg---TdnH---------  339 (463)
T d2a7va1         275 NFAV-FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY--SLVSGG---TDNH---------  339 (463)
T ss_dssp             HHHH-TTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC--EEGGGS---CSSS---------
T ss_pred             hhhc-CcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC--eeecCC---CCCc---------
Confidence            5431 22322244222221  1122     13567789999999999999999874  454322   2222         


Q ss_pred             CCeeEEEEe----CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 027424          135 AGSVLSFLT----GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  210 (223)
Q Consensus       135 ~ggl~sf~~----~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL  210 (223)
                         ++-+++    .+-..+++.++..++.....++.+.++    |..++  .      .+.| ++.+.|...+-+|.++|
T Consensus       340 ---lvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~----~~~~s--G------iRiG-T~a~TtrG~~e~dm~~i  403 (463)
T d2a7va1         340 ---LVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRS----AITPG--G------LRLG-APALTSRQFREDDFRRV  403 (463)
T ss_dssp             ---EEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCC----SSSCS--E------EEEE-SHHHHHTTCCHHHHHHH
T ss_pred             ---eeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCC----CCCCC--c------eEeC-CHHHHhCCCCHHHHHHH
Confidence               444554    134567888999998876666655432    11100  0      0111 22222333566788888


Q ss_pred             HHHHHHHHh
Q 027424          211 ISDLDKALR  219 (223)
Q Consensus       211 ~~dl~~Al~  219 (223)
                      .+-+.++|.
T Consensus       404 A~~I~~~l~  412 (463)
T d2a7va1         404 VDFIDEGVN  412 (463)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888875

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=3.3e-09  Score=93.89  Aligned_cols=177  Identities=21%  Similarity=0.223  Sum_probs=117.3

Q ss_pred             CccccCCEEEEecCCCC-----CCCcCcccCCCcEEEecccccccCCcccceeEEEecC--hhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMS-----PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--ERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-----~~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~--~~~~~~l~~~~~~~g~~~s   73 (223)
                      ||++.|++|++|.++-+     ...++|+++ ||||..|+||+|.|+   .||++.++.  +++.+++.... ..|..-+
T Consensus       188 iad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDvvt~tThKtlrGP---rggiI~~~~~~~~~~~~i~~av-fPg~qgg  262 (416)
T d1dfoa_         188 IADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHVVTTTTHKTLAGP---RGGLILAKGGSEELYKKLNSAV-FPGGQGG  262 (416)
T ss_dssp             HHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSEEEEESSSTTCCC---SCEEEEESSCCHHHHHHHHHHH-TTTTCSS
T ss_pred             HHHhcCceEEcchhhhhcceeccccCCcccc-cceeeeehhhcccCC---CceEEEeccchHhHHHHHHhhh-CcccccC
Confidence            57899999999999754     467999996 799999999999999   699998874  46666664321 2232223


Q ss_pred             hHhHHH--HHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe---
Q 027424           74 PFDCWI--CLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT---  143 (223)
Q Consensus        74 p~da~l--l~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~---  143 (223)
                      |.....  +.-+++     .+....++..+||+.||+.|.++..  +|..-|-   ..            -++-+++   
T Consensus       263 p~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~--~iv~ggT---dn------------Hlvlvdl~~~  325 (416)
T d1dfoa_         263 PLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGY--KVVSGGT---DN------------HLFLVDLVDK  325 (416)
T ss_dssp             CCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC--EEGGGSC---SS------------SEEEEECGGG
T ss_pred             ccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCc--ccccCCC---CC------------ceeEEEeccc
Confidence            422211  122222     3467789999999999999999864  5554321   11            2444554   


Q ss_pred             C-CHHHHHHHHhhcCcceeccccCCC-CCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE--------ecCCCHHHHHHH
Q 027424          144 G-SLALSKHVVETTKYFSITVSFGSV-KSLISMPCFMSHASIPVEVRQARGLTEDLVRIS--------VGIEDVNDLISD  213 (223)
Q Consensus       144 ~-~~~~~~~f~~~l~l~~~~~s~G~~-~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls--------vGlEd~~dL~~d  213 (223)
                      + +-..+++.++..++.....++.+. ++    |.                 .++-|||.        .+-+|.+.+.+-
T Consensus       326 ~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~----~~-----------------~~SGiRiGT~a~TtrG~~e~d~~~iA~~  384 (416)
T d1dfoa_         326 NLTGKEADAALGRANITVNKNSVPNDPKS----PF-----------------VTSGIRVGTPAITRRGFKEAEAKELAGW  384 (416)
T ss_dssp             TCCHHHHHHHHHHTTEECEECCCTTCSSC----TT-----------------TCSEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCeEEeCCcCCCCCCC----CC-----------------CCCceEeCCHHHHhCCCCHHHHHHHHHH
Confidence            2 446678889999887665555432 22    11                 22335554        566788888888


Q ss_pred             HHHHHhc
Q 027424          214 LDKALRT  220 (223)
Q Consensus       214 l~~Al~~  220 (223)
                      +.++|+.
T Consensus       385 I~~~l~~  391 (416)
T d1dfoa_         385 MCDVLDS  391 (416)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            8888864

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.79  E-value=5e-09  Score=92.15  Aligned_cols=105  Identities=14%  Similarity=0.201  Sum_probs=70.1

Q ss_pred             CccccCCEEEEecCCCCCC------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPV------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +||++|++++||++++.+.      ...|.+.|||+++.|.||+++++.  .+|++..+++.+.+++.......+ ..+|
T Consensus       236 ~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~-~~~~  312 (434)
T d2z67a1         236 ICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPI--GGGLVYSTDAEFIKEISLSYPGRA-SATP  312 (434)
T ss_dssp             HHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCS--SCEEEEESCHHHHHHHHTTSCSCB-CSHH
T ss_pred             HHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEcCccccccCC--CccccccCcHHHHHHHHhhccccc-ccch
Confidence            4899999999999998754      234678899999999999998663  345666677666555433221111 2233


Q ss_pred             -HhHHH--HHhcHHHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           75 -FDCWI--CLRGVKTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        75 -~da~l--l~~~l~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                       ..+|.  ...+.+.+..+.++..+++..+++.|++-
T Consensus       313 ~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l  349 (434)
T d2z67a1         313 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL  349 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence             22222  23334445666788888888888888764

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=98.71  E-value=7.6e-08  Score=82.56  Aligned_cols=136  Identities=19%  Similarity=0.132  Sum_probs=80.9

Q ss_pred             cCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH--------------------
Q 027424            5 HGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--------------------   63 (223)
Q Consensus         5 ~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~--------------------   63 (223)
                      .|++++||.+.+.+.. .+.-++|+|+++-|.+|+++|+.-  .|++..+++.. +++..                    
T Consensus       178 ~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G--~g~l~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~  254 (381)
T d1elua_         178 YPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAG--VGGLYIHGDCL-GEINPTYVGWRSITYGAKGEPTGWA  254 (381)
T ss_dssp             SCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTT--CEEEEECTTTG-GGCCCCSCCTTTEEECTTSCEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccch--hhHHHhhHHHH-HhcCccccccccccccccccccccc
Confidence            5799999999876532 333356899999999999998742  25565555322 21110                    


Q ss_pred             --HHHhcCCCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCC
Q 027424           64 --LQNAEGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  135 (223)
Q Consensus        64 --~~~~~g~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~  135 (223)
                        .......+.+-...+.+..+++-+      ..|.++..+++..+.+.|++.|.+ +++.|.   .|           .
T Consensus       255 ~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~---~~-----------~  319 (381)
T d1elua_         255 EGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHV-HCLATS---AP-----------Q  319 (381)
T ss_dssp             SGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTE-EESCSS---CC-----------S
T ss_pred             ccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCe-EecCCC---Cc-----------c
Confidence              001111123333344455555543      455678888899999999999886 333331   11           4


Q ss_pred             CeeEEEEeCC---HHHHHHHHhhcCc
Q 027424          136 GSVLSFLTGS---LALSKHVVETTKY  158 (223)
Q Consensus       136 ggl~sf~~~~---~~~~~~f~~~l~l  158 (223)
                      +++++|.+.+   .+...+.++.-++
T Consensus       320 ~~~vsf~~~~~~~~~~i~~~L~~~gi  345 (381)
T d1elua_         320 AGLVSFTVDSPLGHRAIVQKLEEQRI  345 (381)
T ss_dssp             SSEEEEEECSSSCHHHHHHHHHHTTE
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHhCCc
Confidence            6899998743   2344444544443

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=98.69  E-value=9.5e-08  Score=84.50  Aligned_cols=109  Identities=13%  Similarity=-0.004  Sum_probs=73.3

Q ss_pred             CccccCCEEEEecCCCCCCCcCcc--------------cCCCcEEEecccccccCCcccceeEEEecChhHH--------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPL--------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA--------   58 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl--------------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~--------   58 (223)
                      +||++|++|+||++++.+..+.+.              +.|+|++++|+||++++.  ++|++++.++..+.        
T Consensus       198 ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~--~~g~ll~~~~~~~~~~~~~~~~  275 (462)
T d1c4ka2         198 RIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF--SQTSQIHKKDSHIKGQLRYCDH  275 (462)
T ss_dssp             HHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC--TTCEEEEEECGGGTTSTTCCCH
T ss_pred             HHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccc--cceEEEEeccccccccchhhhH
Confidence            489999999999999887544332              234599999999999954  57777777664431        


Q ss_pred             HHHHHHHHhcCCCCChHhHHHHHhcHHHH---------HHHHHHHHhHHHHHHHHHhcCCCeeEE
Q 027424           59 KELYFLQNAEGSGLAPFDCWICLRGVKTM---------ALRVEKQQDNAQKIAEFLASHPRVKKV  114 (223)
Q Consensus        59 ~~l~~~~~~~g~~~sp~da~ll~~~l~tl---------~~R~~~~~~na~~la~~L~~~p~v~~V  114 (223)
                      ..++.....+. +.+|  .|.++.+++..         ...+++..+++..+++.+++.+.....
T Consensus       276 ~~~~~~~~~~~-t~sp--~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~  337 (462)
T d1c4ka2         276 KHFNNSFNLFM-STSP--FYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRP  337 (462)
T ss_dssp             HHHHHHHHHHS-CSSC--CHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred             HHHHHhhhhcc-cCCc--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            23333333333 3456  56666666653         233467788899999999887764433

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=3.2e-08  Score=85.50  Aligned_cols=191  Identities=20%  Similarity=0.188  Sum_probs=102.5

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH--------HHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--------LQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~--------~~~~~g~~   71 (223)
                      +||++|++++||.+.+.+.. .+.-..++|+++.|.+|++++++   .|++..+++.+. .+..        .....|..
T Consensus       168 ~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g---~g~~~~~~~~~~-~~~~~~~gg~~~~~~~~~~~  243 (391)
T d1p3wa_         168 MCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG---IGALYVRRKPRV-RIEAQMHGGGHERGMRSGTL  243 (391)
T ss_dssp             HHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSS---CEEEEECBTTBC-CCCCSSCSSCTTTTTSCSCC
T ss_pred             HhccCCcEEEEeeccccCCccccchhccccccccccccccCCCc---eEEEEEecchhc-ccCCcccCCccccCcccCcc
Confidence            37899999999999876542 34445789999999999987765   355555553221 1000        00111211


Q ss_pred             CChHhHHHHHhcHH----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHH
Q 027424           72 LAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  147 (223)
Q Consensus        72 ~sp~da~ll~~~l~----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~  147 (223)
                      ..+.... +...++    ....+.++..+....+.+.|...+.+ .+..+ .            ..+...+++|.+... 
T Consensus       244 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~-~------------~~~~~~~~~~~~~~~-  307 (391)
T d1p3wa_         244 PVHQIVG-MGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEV-YLNGD-L------------EHGAPNILNVSFNYV-  307 (391)
T ss_dssp             CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTE-EECSC-T------------TTSCTTEEEEEETTS-
T ss_pred             hhhhhhh-hhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCe-eeccc-c------------cccCceEEEEEeCCC-
Confidence            1111111 112222    22333455555566666667766653 33222 1            123456777776322 


Q ss_pred             HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCC----CeEEEEecC----CCHHHHHHHHHHHHh
Q 027424          148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE----DLVRISVGI----EDVNDLISDLDKALR  219 (223)
Q Consensus       148 ~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~----~liRlsvGl----Ed~~dL~~dl~~Al~  219 (223)
                      ..+.+...++-  ++++-|..-+-    ..  +.  +.......|+++    +.||+|+|+    ||++.+++.|+++++
T Consensus       308 ~~~~~~~~l~~--i~v~~G~~c~~----~~--~~--~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~  377 (391)
T d1p3wa_         308 EGESLIMALKD--LAVSSGSACTS----AS--LE--PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG  377 (391)
T ss_dssp             CHHHHHHHTTT--EECBCCCC------------C--CCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhCC--CEEEccccccC----Cc--cc--hhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            23345555543  34444432111    10  00  011223456653    689999997    789999999999887


Q ss_pred             cC
Q 027424          220 TG  221 (223)
Q Consensus       220 ~~  221 (223)
                      ++
T Consensus       378 ~l  379 (391)
T d1p3wa_         378 RL  379 (391)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=98.63  E-value=2.3e-07  Score=78.98  Aligned_cols=111  Identities=12%  Similarity=0.071  Sum_probs=68.9

Q ss_pred             ccccCCEEEEecCCCCCCC--cCcc----cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            2 AHAHGALLLVDNSIMSPVL--SRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~--~~pl----~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      |+++++++|+|+++.....  ..+.    ..+-.|++.|++|.++-.+..+|.++ +.++.+.+.++..+  .....+..
T Consensus       173 a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i-~~~~~~~~~~~~~~--~~~~~~~~  249 (355)
T d1lc5a_         173 CKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLV-NSDDAAMARMRRQQ--MPWSVNAL  249 (355)
T ss_dssp             HHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEE-CCCHHHHHHHHHHS--CTTCSCHH
T ss_pred             ccccccccccccceeeeeeecccccccccccccceeeccccccccccccccccee-ccchhhhHHHHhhc--CCcccccc
Confidence            6789999999999743211  1111    12334999999999886677776644 55554544444322  12234554


Q ss_pred             hHHHHHhcHH---HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           76 DCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        76 da~ll~~~l~---tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      ........++   .+..+.++..++...+.+.|.+.+.+. + +|
T Consensus       250 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~p  292 (355)
T d1lc5a_         250 AALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT-V-YP  292 (355)
T ss_dssp             HHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE-E-CC
T ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcE-E-CC
Confidence            4444444444   345556777788888889999887753 3 55

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=98.62  E-value=2.1e-07  Score=81.19  Aligned_cols=186  Identities=17%  Similarity=0.175  Sum_probs=104.8

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH---------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---------------   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~---------------   64 (223)
                      +||++|++++||.|.+.+.. .+.-++|+|+++-|.+|++++++   .|++..+++ ....+...               
T Consensus       188 ~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G---~g~l~v~~~-~~~~~~p~~~g~~~~~~~~~~~~  263 (408)
T d1t3ia_         188 LAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG---IGFLYGKEE-ILEAMPPFFGGGEMIAEVFFDHF  263 (408)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT---CEEEEECHH-HHHHSCCCSCSTTSEEEECSSCE
T ss_pred             hhhccCceeeeccceecccccccccccCCceEEeccccccCCCC---ccccccchh-hhhcCCceecCCccccccccccc
Confidence            37889999999999866543 45455799999999999987664   466666653 22211100               


Q ss_pred             ------HHhcCCCCChHhHHHHHhcHHHHH----HHH-HHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           65 ------QNAEGSGLAPFDCWICLRGVKTMA----LRV-EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        65 ------~~~~g~~~sp~da~ll~~~l~tl~----~R~-~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                            .+....+.+....+-+..+++.+.    .++ ++..+....+.+.++..|.+ +++-|.-.           ..
T Consensus       264 ~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~-----------~~  331 (408)
T d1t3ia_         264 TTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQL-RLYGPNPK-----------HG  331 (408)
T ss_dssp             EECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTE-EEESCCGG-----------GS
T ss_pred             ccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccc-cccCCCcc-----------cc
Confidence                  011112223322333444555432    222 33334455566667788876 44444211           11


Q ss_pred             CCCeeEEEEeC--CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCH
Q 027424          134 GAGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDV  207 (223)
Q Consensus       134 g~ggl~sf~~~--~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~  207 (223)
                      ..+++++|.+.  +.+...++++.-++.   ++-|..-   +.|           .....+ .++.||||+|+    ||+
T Consensus       332 ~~~~iv~f~~~~~~~~~v~~~L~~~gI~---v~~G~~c---~~~-----------~~~~~~-~~g~vRiS~~~ynt~~di  393 (408)
T d1t3ia_         332 DRAALASFNVAGLHASDVATMVDQDGIA---IRSGHHC---TQP-----------LHRLFD-ASGSARASLYFYNTKEEI  393 (408)
T ss_dssp             CBCSEEEEEETTBCHHHHHHHHHTTTEE---CBCSCTT---CHH-----------HHHHTT-CCCCEEEECCTTCCHHHH
T ss_pred             CcceEEEEEeCCCCHHHHHHHHhhCCcE---EecCccc---ccH-----------HHHhhc-CCccEEEECCCCCCHHHH
Confidence            25789999884  445555666655543   3444210   011           111233 35689999995    567


Q ss_pred             HHHHHHHHHHHhc
Q 027424          208 NDLISDLDKALRT  220 (223)
Q Consensus       208 ~dL~~dl~~Al~~  220 (223)
                      |.+++-|++.++.
T Consensus       394 d~li~~L~~~~~~  406 (408)
T d1t3ia_         394 DLFLQSLQATIRF  406 (408)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7778888777653

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.51  E-value=1.2e-06  Score=75.20  Aligned_cols=107  Identities=10%  Similarity=0.067  Sum_probs=62.2

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc-cC----CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL-EL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl-~~----GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|++++++||+|++++--..    ..++ .+    .--|++.|+||.++-.|..+|+++ + ++++.+.+..........
T Consensus       187 ~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii-~-~~~~~~~~~~~~~~~~~~  264 (388)
T d1gdea_         187 FVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVA-A-PSWIIERMVKFQMYNATC  264 (388)
T ss_dssp             HHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEE-C-CHHHHHHHHHHHHTTTCS
T ss_pred             HHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEE-e-eccchhhhhhcccccccc
Confidence            37899999999999853211    1111 11    124899999999987788887644 4 455656665555444444


Q ss_pred             CChHhHHHHHhcHH------HHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           72 LAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        72 ~sp~da~ll~~~l~------tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                      .+......+...++      .+....++..++...+.+.|+.+.
T Consensus       265 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  308 (388)
T d1gdea_         265 PVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMG  308 (388)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhcc
Confidence            44433333333332      122223444556666777777654

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2e-07  Score=79.93  Aligned_cols=52  Identities=19%  Similarity=0.175  Sum_probs=40.6

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecC
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG   54 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~   54 (223)
                      +||++|++++||.+.+.+. ..+.-++|+|+++.|.+|+++|+.  -+|++..++
T Consensus       169 ~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~--g~~~~~~~~  221 (388)
T d1h0ca_         169 LCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPP--GTSLISFSD  221 (388)
T ss_dssp             HHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCT--TCEEEEECH
T ss_pred             HhhcccccceeccccccccccccccccccceecccccccccCCC--ceEEEeecH
Confidence            4789999999999987653 355567899999999999999885  345555544

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=9.7e-06  Score=68.98  Aligned_cols=141  Identities=9%  Similarity=0.023  Sum_probs=82.8

Q ss_pred             cccCCEEEEecCCCCC-CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHH-------------------
Q 027424            3 HAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-------------------   62 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~-~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~-------------------   62 (223)
                      |.++++++||.+-+.+ ...+.-++|+|+++-|.+|+++|+.-  .|++..+++ ..+++.                   
T Consensus       164 ~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G--~g~l~vs~~-~~~~~~~~~~~~~~~~~~~~~~~~~  240 (382)
T d2bkwa1         164 TSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAG--LSISLCSSR-FMDYALNDSKNGHVHGYFSSLRRWT  240 (382)
T ss_dssp             HCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSC--EEEEEECHH-HHHHHTCHHHHCCCSCSTTCHHHHH
T ss_pred             cccceeeeeecccccccccccccccCeeEEeecccccCcCCCc--hhhhhccHH-HHhhhhhcccCCCcccchhhhhhhh
Confidence            4567999999997554 33555668999999999999987742  356666653 222211                   


Q ss_pred             -HHHHh------cCCCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHh
Q 027424           63 -FLQNA------EGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  130 (223)
Q Consensus        63 -~~~~~------~g~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~  130 (223)
                       .....      +-.+.+....+.+..+|+.+     ..+.+++.+.+..+.+.+...+.+  ..+...++.        
T Consensus       241 ~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~--------  310 (382)
T d2bkwa1         241 PIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQL--TSVSRYPSN--------  310 (382)
T ss_dssp             HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCC--EESSCSSST--------
T ss_pred             hhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccc--cccccCchh--------
Confidence             00000      11123333445566666654     445566667777777777776653  222222111        


Q ss_pred             hhCCCCeeEEEEeCCHHHHHHHHhhcCc
Q 027424          131 QAKGAGSVLSFLTGSLALSKHVVETTKY  158 (223)
Q Consensus       131 ~~~g~ggl~sf~~~~~~~~~~f~~~l~l  158 (223)
                        ....++++|...+.++..++++.-++
T Consensus       311 --~~s~~v~~~~~~~~~~~~~~L~~~gi  336 (382)
T d2bkwa1         311 --MSAHGLTAVYVADPPDVIAFLKSHGV  336 (382)
T ss_dssp             --TBCSSCEEEECSCHHHHHHHHHHTTE
T ss_pred             --ccCCcEEEEcCCCHHHHHHHHHHCCe
Confidence              11346788888666667777776544

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=4.4e-08  Score=86.03  Aligned_cols=105  Identities=13%  Similarity=0.103  Sum_probs=64.4

Q ss_pred             CccccCCEEEEecCCCCCCCc--C----cccC-CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS--R----PLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA   73 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~--~----pl~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~s   73 (223)
                      +||++|++++||++++....+  +    ...+ ++|+++.|.||+++++.  -+|+++.++..+.+.+.......+. .+
T Consensus       219 ~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~--g~~~l~~~~~~~~~~~~~~~~~~~~-~~  295 (445)
T d3bc8a1         219 ICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPV--GGAIIAGFNEPFIQDISKMYPGRAS-AS  295 (445)
T ss_dssp             HHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCS--SCEEEEESCHHHHHHHHHHSCSCBC-SH
T ss_pred             HHHHhCCcEEEEccchhhhhhccccchhccCcCCcceEEecCccccccCC--CCceeeeCChHHHHHHHHHHhhccc-Cc
Confidence            589999999999998765421  1    1223 49999999999988653  3667777776665554432222221 22


Q ss_pred             h-HhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcC
Q 027424           74 P-FDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        74 p-~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~  108 (223)
                      | ...|..+.  +.+.+...+++..+++..+.+.|++.
T Consensus       296 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l  333 (445)
T d3bc8a1         296 PSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKL  333 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Confidence            2 23333322  23334555677777777777777653

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=98.46  E-value=1.8e-06  Score=74.61  Aligned_cols=109  Identities=15%  Similarity=0.089  Sum_probs=68.6

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccC------CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLEL------GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~------GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|+++|++||+|++++--..    ..++..      .-.|++.|+||.++-.|..+|. ++. ++++.+.+.........
T Consensus       191 ~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~-~~~-~~~~~~~~~~~~~~~~~  268 (388)
T d1j32a_         191 VAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGF-LAG-PVPLVKAATKIQGHSTS  268 (388)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEE-EEC-CHHHHHHHHHHHHTTTC
T ss_pred             ccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEE-EEE-CHHHHHHHHHhhhhccc
Confidence            36889999999999853222    112211      1248999999999877778766 444 55666666555544444


Q ss_pred             CCChHhHHHHHhcHH----HHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           71 GLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        71 ~~sp~da~ll~~~l~----tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ..++...+.+...++    .+....+...++...+.+.|++++.+
T Consensus       269 ~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  313 (388)
T d1j32a_         269 NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGL  313 (388)
T ss_dssp             SCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             cccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            455543333333332    24444566777888899999988764

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.7e-06  Score=73.58  Aligned_cols=107  Identities=16%  Similarity=0.120  Sum_probs=55.5

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc---CCCcEEEecccccccCCcccceeEEEecChhHHHH-HHHHHHhcCCC-
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSG-   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~-l~~~~~~~g~~-   71 (223)
                      +|+++|+++|+|+++....+    ..++.   ..--+++.|.+|.++-.+..+|.++ +.+...... +.......+.. 
T Consensus       161 ~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~-~~~~~~~~~~~~~~~~~~~~~~  239 (361)
T d1d2fa_         161 LCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGI-IENSSSRDAYLSALKGRDGLSS  239 (361)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEE-ECSHHHHHHHHHHHHTTSCCCS
T ss_pred             hhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeee-cchhHHHHHHhhhccccccccc
Confidence            36889999999999854221    11222   1224888999999876666665544 444333332 33333333322 


Q ss_pred             CChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhcC
Q 027424           72 LAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        72 ~sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~~  108 (223)
                      .+.......+..++.    ...+.+...++...+++.+.++
T Consensus       240 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  280 (361)
T d1d2fa_         240 PSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAA  280 (361)
T ss_dssp             CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhh
Confidence            222222222222222    2233345556666666666554

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=98.39  E-value=6.6e-06  Score=70.42  Aligned_cols=184  Identities=16%  Similarity=0.148  Sum_probs=99.6

Q ss_pred             CccccCCEEEEecCCCCCCCc----Ccc--cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~pl--~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++++++|.|+.+..-...    .++  ...-.+++.|++|.++..|..+|+++ ..++.+.+.+...... ..+.++
T Consensus       187 ~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~-~~~~~i~~~~~~~~~~-~~~~~~  264 (389)
T d2gb3a1         187 IAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLI-TRNEELISHAMKLAQG-RLAPPL  264 (389)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEE-CSCHHHHHHHHHHHHH-SCCCCH
T ss_pred             hcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeee-ccchhHHHHHhhhhhc-cccccc
Confidence            378899999999998532221    111  12335899999999999998887755 5565555444333332 223333


Q ss_pred             HhHHHH---HhcHHHHHHH-HHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC---CHH
Q 027424           75 FDCWIC---LRGVKTMALR-VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---SLA  147 (223)
Q Consensus        75 ~da~ll---~~~l~tl~~R-~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~---~~~  147 (223)
                      ......   +..-+....+ .++..++...+.+.|++++.+ .+..|                ..|-.+.+++.   +.+
T Consensus       265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~p----------------~~g~~~~~~lp~~~~~~  327 (389)
T d2gb3a1         265 LEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLK-RFTKP----------------SGAFYITAELPVEDAEE  327 (389)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CBCCC----------------SBSSEEEEECSSSCHHH
T ss_pred             cccccccccccccchhcccccccccccchhhhhhhhhhccc-cccCC----------------CceEEEEEeCCCCCHHH
Confidence            322222   2222333233 355667778899999998753 22333                13444555552   234


Q ss_pred             HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHH---HHHHHHHHhc
Q 027424          148 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL---ISDLDKALRT  220 (223)
Q Consensus       148 ~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL---~~dl~~Al~~  220 (223)
                      .+++.++...+...++.+        .|.+..+  .+      .|..++.+|||++. +.++|   ++.|.++|++
T Consensus       328 ~~~~ll~e~~l~~~~v~v--------~pg~~f~--~~------~~~~~~~iRis~~~-~~~~l~~a~~~L~~~lk~  386 (389)
T d2gb3a1         328 FARWMLTDFNMDGETTMV--------APLRGFY--LT------PGLGKKEIRIACVL-EKDLLSRAIDVLMEGLKM  386 (389)
T ss_dssp             HHHHHHHSCCBTTEEEEC--------EEGGGGC--SS------TTTTSSEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhCCEEE--------EeCcccc--cC------CCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHHH
Confidence            455555544433222111        1211110  00      12346889999985 44544   4566677664

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=9.3e-06  Score=70.82  Aligned_cols=179  Identities=13%  Similarity=0.139  Sum_probs=110.9

Q ss_pred             CccccCCEEEEecCCCCCCCcC---------cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH--HHhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~---------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~--~~~~g   69 (223)
                      +|+++|+.++||++++....-.         .+.--+|+++.|++|.++|.   .||++. .++++.+.++..  ....+
T Consensus       202 L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~---~Gg~v~-g~~~~~~~l~~~~~~~~~s  277 (401)
T d1fc4a_         202 LADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGA---SGGYTA-ARKEVVEWLRQRSRPYLFS  277 (401)
T ss_dssp             HHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSS---SCEEEE-ECHHHHHHHHHHCHHHHHS
T ss_pred             HHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccC---Cccccc-CCHHHHHHHHcCChhhhhc
Confidence            4789999999999987653211         11113799999999999764   477665 456666655432  22356


Q ss_pred             CCCChHhHHHHHhcHHHH---HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           70 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl---~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      ..++|-.+......++.+   ..+.++..+|...+.+.+......  +    .             ...++++.+.+++.
T Consensus       278 ~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~--~----~-------------~~~~pIv~v~~~~~  338 (401)
T d1fc4a_         278 NSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFT--L----A-------------GADHAIIPVMLGDA  338 (401)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC--B----C-------------CSSSSEEEEEEECH
T ss_pred             CCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccCCc--c----C-------------CCCCCEEEEEECCH
Confidence            667886666666666654   456788888888888888876521  0    0             11356788888777


Q ss_pred             HHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhcCC
Q 027424          147 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTGP  222 (223)
Q Consensus       147 ~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~~~  222 (223)
                      ..+..|.+.|.=  .|.-.    +-+..|+..              -....||+++-.    ||+|.+++.|+++.+...
T Consensus       339 ~~a~~~~~~L~~--~Gi~v----~~i~~PtVp--------------~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg  398 (401)
T d1fc4a_         339 VVAQKFARELQK--EGIYV----TGFFYPVVP--------------KGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             HHHHHHHHHHHH--TTEEC----CEECTTSSC--------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH--CCceE----EeECCCCCC--------------CCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence            766666655421  11111    112233210              023459999975    456667777777766543

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.37  E-value=2.2e-06  Score=72.26  Aligned_cols=108  Identities=17%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhH--------------HHHHHHH-
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL--------------AKELYFL-   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~--------------~~~l~~~-   64 (223)
                      +||++|++++||.|.+.+.. .+.-++|+|+++-|.+|++.|+.-  .|++..+++.+              ....... 
T Consensus       152 ~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (361)
T d1m32a_         152 LAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQWRCME  229 (361)
T ss_dssp             HHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHH
T ss_pred             hhcccceeeEeecccccCcccccccccccceEEeeecccccCCCC--ceEEEechhhhhhhccccccccccchhhhcccc
Confidence            37899999999999876532 455567999999999999998742  45566654311              0011111 


Q ss_pred             --HHhcCCCCChHhHHHHHhcHHHH------HHHHHHHHhHHHHHHHHHhcCCC
Q 027424           65 --QNAEGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        65 --~~~~g~~~sp~da~ll~~~l~tl------~~R~~~~~~na~~la~~L~~~p~  110 (223)
                        ......+.+....+.+...++.+      ..+.++..+.+..+.++++..+.
T Consensus       230 ~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  283 (361)
T d1m32a_         230 DNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGF  283 (361)
T ss_dssp             HTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCC
Confidence              11112223333333344444432      23345666777778888887653

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=98.36  E-value=3.3e-06  Score=72.83  Aligned_cols=107  Identities=8%  Similarity=0.077  Sum_probs=60.5

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccC------CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLEL------GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~------GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~   70 (223)
                      +|++++++||+|+.+..-.+    ..+...      .--+++.|++|.++-.+..+||++ +.++.+.+.+.........
T Consensus       192 ~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~-~~~~~i~~~~~~~~~~~~~  270 (394)
T d1c7na_         192 IVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII-IKNPDIRERFTKSRDATSG  270 (394)
T ss_dssp             HHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE-CCCHHHHHHHHHHHHHTTC
T ss_pred             cccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccccccccccc-ccChhhhhhhhhhhhhccc
Confidence            36889999999999853211    111111      123889999999987777887766 5666676666655554443


Q ss_pred             CCChHhHHHHH-hc---HHHHHHH-HHHHHhHHHHHHHHHhcC
Q 027424           71 GLAPFDCWICL-RG---VKTMALR-VEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        71 ~~sp~da~ll~-~~---l~tl~~R-~~~~~~na~~la~~L~~~  108 (223)
                      ..++.....+. ..   .+....+ .+...++-..+.+.++.+
T Consensus       271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  313 (394)
T d1c7na_         271 MPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVN  313 (394)
T ss_dssp             CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhcc
Confidence            33332222211 11   1222223 344444555566677654

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=5e-06  Score=70.14  Aligned_cols=130  Identities=9%  Similarity=0.071  Sum_probs=78.8

Q ss_pred             cccCCEEEEecCCCCCCCcC----cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHH
Q 027424            3 HAHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW   78 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~~~~~----pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~   78 (223)
                      .++++++|+|+.+.......    +....--|++.|++|+++..|..+|+++ . ++.+.+++...+...  .++.....
T Consensus       164 ~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~-~-~~~~i~~l~~~~~~~--~~s~~~~~  239 (334)
T d2f8ja1         164 LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVV-A-SEKFIDAYNRVRLPF--NVSYVSQM  239 (334)
T ss_dssp             HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEE-E-CHHHHHHHHHHSCTT--CSCHHHHH
T ss_pred             ccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcc-c-chHHHHHHHHhhccc--ccchhhhh
Confidence            45799999999863322111    1111223999999999987788876655 4 566777766554332  24443222


Q ss_pred             H---HHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhh
Q 027424           79 I---CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET  155 (223)
Q Consensus        79 l---l~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~  155 (223)
                      .   .+...+.+..+.++..++...+.+.|+++. + +|. |                ..|+.+.+.+. ...+++|.+.
T Consensus       240 ~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~-~~~-~----------------~~g~f~~~~~~-~~~~~~~~~~  299 (334)
T d2f8ja1         240 FAKVALDHREIFEERTKFIVEERERMKSALREMG-Y-RIT-D----------------SRGNFVFVFME-KEEKERLLEH  299 (334)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT-C-EEC-C----------------CCSSEEEEECC-HHHHHHHHHH
T ss_pred             hcccccccccchhhHHHHHHHHHHHHHHHHHHCC-C-eEC-C----------------CCceEEEEECC-CCCHHHHHHH
Confidence            2   333444456667778888889999999875 3 443 3                13554555553 3355666666


Q ss_pred             c
Q 027424          156 T  156 (223)
Q Consensus       156 l  156 (223)
                      |
T Consensus       300 L  300 (334)
T d2f8ja1         300 L  300 (334)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.31  E-value=7.5e-06  Score=69.56  Aligned_cols=107  Identities=12%  Similarity=-0.027  Sum_probs=67.5

Q ss_pred             CccccCCEEEEecCCCCCCCcCccc------CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLE------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~------~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|+++|+++++|+.++..+...+..      ....+++.|++|.++..+..+|+ ++. ++++.+.+...........++
T Consensus       180 ~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~-~~~-~~~~~~~~~~~~~~~~~~~~~  257 (368)
T d1v2da_         180 LARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGW-IVG-PKEFMPRLAGMRQWTSFSAPT  257 (368)
T ss_dssp             HHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEE-EEC-CTTTHHHHHHHHHHHTSSCCH
T ss_pred             HHHHcCCeeeechhhhhhcccccccccccccccccceeeccccccccccccccc-ccc-cccccchhhhhhhcccccccc
Confidence            3789999999999875433222111      13458889999998888888766 434 446666666666555555666


Q ss_pred             HhHHHHHhcHHH-----HHHH-HHHHHhHHHHHHHHHhcCC
Q 027424           75 FDCWICLRGVKT-----MALR-VEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        75 ~da~ll~~~l~t-----l~~R-~~~~~~na~~la~~L~~~p  109 (223)
                      .....+...+..     ...+ .+...++...+.+.|+++.
T Consensus       258 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g  298 (368)
T d1v2da_         258 PLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG  298 (368)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcC
Confidence            443333444432     1222 2445777788888998874

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.28  E-value=2.2e-05  Score=68.59  Aligned_cols=173  Identities=17%  Similarity=0.150  Sum_probs=107.2

Q ss_pred             CccccCCEEEEecCCCCCCCc-C--------cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH--HhcC
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-R--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-~--------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~--~~~g   69 (223)
                      +++++|+.|+||++++.++.= +        -+..-.||++.|+.|.+++.    ||++++ ++++.+.++...  -.+.
T Consensus       202 L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~----Gg~v~~-~~~~i~~l~~~~~~~ifS  276 (396)
T d2bwna1         202 IAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF----GGYIAA-SARMVDAVRSYAPGFIFS  276 (396)
T ss_dssp             HHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC----CEEEEE-CHHHHHHHHHHCHHHHTS
T ss_pred             HhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccccc----ccccch-hHHHHHHHHhhcchhhhc
Confidence            468899999999999876531 1        12234799999999999954    787765 456666555432  2455


Q ss_pred             CCCChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           70 SGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      +.++|..+..+..+++-+     ..+.++..+|+..+.+.|++..      +|-.             ...+.++.+.++
T Consensus       277 talpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g------~~~~-------------~~~spIvpv~ig  337 (396)
T d2bwna1         277 TSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALG------MPII-------------DHGSHIVPVVIG  337 (396)
T ss_dssp             BCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHT------CCBC-------------CCSSSCEEEECC
T ss_pred             ccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcC------CCcC-------------CCCCCEEEEEeC
Confidence            667887666666666654     2223555667777777776543      1211             113678888888


Q ss_pred             CHHHHHHHHhh-c---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          145 SLALSKHVVET-T---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       145 ~~~~~~~f~~~-l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      +.+.+.++.+. |   +++-         +-+.+|+.      +        -....+|++|=-...++=|+.|-++|++
T Consensus       338 ~~~~~~~~a~~lL~e~Gi~v---------~~i~~PtV------p--------~g~~rlRi~lsa~ht~edId~l~~~L~~  394 (396)
T d2bwna1         338 DPVHTKAVSDMLLSDYGVYV---------QPINFPTV------P--------RGTERLRFTPSPVHDLKQIDGLVHAMDL  394 (396)
T ss_dssp             CHHHHHHHHHHHHHHHCEEC---------CEECTTTS------C--------TTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCEEE---------EEECCCcC------C--------CCCeeEEEEeCccCCHHHHHHHHHHHHH
Confidence            87766655443 2   3332         12223421      0        0235699999877666666666666653

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.25  E-value=1.1e-05  Score=69.70  Aligned_cols=111  Identities=14%  Similarity=0.020  Sum_probs=64.7

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccCCC---cEEEecccccccCCcccceeEEEecChhHHHHHHHH---HHhcCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLELGA---DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---QNAEGS   70 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~GA---Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~---~~~~g~   70 (223)
                      +|+++|++++.|+.+.-.+.    ..|...-.   =|++.|+||.++..|..+|++++.+++.....+...   ......
T Consensus       194 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (395)
T d1xi9a_         194 IAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRL  273 (395)
T ss_dssp             HHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTC
T ss_pred             hhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCC
Confidence            36789999999999854222    11221111   288999999999889899877665554332322221   111221


Q ss_pred             CCChHhHHHHHh----cHHHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           71 GLAPFDCWICLR----GVKTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        71 ~~sp~da~ll~~----~l~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                      ..+......+..    .-+.+....+...++...+.+.|++.+.+
T Consensus       274 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  318 (395)
T d1xi9a_         274 CPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGI  318 (395)
T ss_dssp             CSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             CcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            222211122222    22234444566778888999999988764

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=1.3e-05  Score=69.38  Aligned_cols=173  Identities=13%  Similarity=0.165  Sum_probs=110.1

Q ss_pred             CccccCCEEEEecCCCCCCCcC-------cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH--HHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR-------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~-------pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~--~~~~g~~   71 (223)
                      +|+++|+.++||++++.+..-.       -.....|+++.++.|.+++.    ||.+.++ ....+.++..  ....+..
T Consensus       192 l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~----Gg~v~~~-~~~~~~l~~~~~~~~~s~~  266 (383)
T d1bs0a_         192 VTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS----GAAVLCS-STVADYLLQFARHLIYSTS  266 (383)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC----CEEEEEC-HHHHHHHHHHCHHHHSSBC
T ss_pred             HHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccccccccccccc----ccccccc-hhHHHHHHhhchhhhhccc
Confidence            4789999999999998765311       11234578999999999854    7777654 4555555543  2334556


Q ss_pred             CChHhHHHHHhcHHHH-----HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCH
Q 027424           72 LAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  146 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl-----~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~  146 (223)
                      ++|-.+..+..+++-+     ..|.++..+|...+.+.|++.+.  .+. +                +.+.++.+.+++.
T Consensus       267 ~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~--~~~-~----------------~~s~Ii~v~~g~~  327 (383)
T d1bs0a_         267 MPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPF--TLA-D----------------SCSAIQPLIVGDN  327 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSC--EEC-S----------------CCSSBCCEEEESH
T ss_pred             ccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCC--ccC-C----------------CCCCEEEEEECCH
Confidence            7776555666666544     35667777888888888887663  111 1                2456777777777


Q ss_pred             HHHHHHHhhc---CcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          147 ALSKHVVETT---KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       147 ~~~~~f~~~l---~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                      +.+.+|.+.|   +++-.         -+..|+.      +        -....||+++-....++=|+.+-++|+.
T Consensus       328 ~~a~~~~~~L~~~Gi~v~---------~~~~PtV------p--------~g~~~lRi~~~a~ht~edid~l~~~L~~  381 (383)
T d1bs0a_         328 SRALQLAEKLRQQGCWVT---------AIRPPTV------P--------AGTARLRLTLTAAHEMQDIDRLLEVLHG  381 (383)
T ss_dssp             HHHHHHHHHHHHTTEECC---------EECTTSS------C--------TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCceEE---------EEcCCCC------C--------CCCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence            6666555544   33211         1223321      0        0245799999998877777777777764

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.25  E-value=3.4e-06  Score=72.30  Aligned_cols=174  Identities=13%  Similarity=0.096  Sum_probs=97.3

Q ss_pred             CccccCCEEEEecCCCCCCC-cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH----------------
Q 027424            1 MAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF----------------   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~----------------   63 (223)
                      +||++|+.++||.+.+.+.. .+.-+.|+|+++-|.+|++.|+.- .+|++..++... +.+..                
T Consensus       189 ~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  266 (404)
T d1qz9a_         189 LSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPG-SQAFVWVSPQLC-DLVPQPLSGWFGHSRQFAMEP  266 (404)
T ss_dssp             HHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTT-CCCEEEECTTTT-TTSCCSCCCGGGBCTTSCCCS
T ss_pred             cccccccceeEEeeccccccccccccccceEEEEechhhcccCCc-eEEEEEechhhh-hhCCccccccCCccccccccc
Confidence            37899999999999876643 344446999999999999865422 245565554321 11000                


Q ss_pred             -------HHHhcCCCCChHhHHHHHhcHH--------HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHH
Q 027424           64 -------LQNAEGSGLAPFDCWICLRGVK--------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  128 (223)
Q Consensus        64 -------~~~~~g~~~sp~da~ll~~~l~--------tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  128 (223)
                             .......+........+...++        ....+.....+....+-+.+...+.+ ++.-|.   .+     
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~i~~p~---~~-----  337 (404)
T d1qz9a_         267 RYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL-TLVTPR---EH-----  337 (404)
T ss_dssp             SCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-EECSCS---SG-----
T ss_pred             cccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCE-EEECCC---Cc-----
Confidence                   0011112233322222223333        33444455555555566666667776 444342   11     


Q ss_pred             HhhhCCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec-C---
Q 027424          129 YSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-I---  204 (223)
Q Consensus       129 ~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-l---  204 (223)
                          ...||++||.+.+.+...+.++.-+++.   +         ..                  .++.||||.| +   
T Consensus       338 ----~~r~~~vsf~~~~~~~v~~~L~~~gi~~---~---------~r------------------~~~~lRiS~~h~ynt  383 (404)
T d1qz9a_         338 ----AKRGSHVSFEHPEGYAVIQALIDRGVIG---D---------YR------------------EPRIMRFGFTPLYTT  383 (404)
T ss_dssp             ----GGBCSEEEEECTTHHHHHHHHHTTTEEC---E---------EE------------------TTTEEEEECCTTTCC
T ss_pred             ----cceeeEEEEecCCHHHHHHHHHHCCCEE---e---------ec------------------CCCeEEEECCCCCCC
Confidence                1257899999866555555565555431   0         00                  2478999987 5   


Q ss_pred             -CCHHHHHHHHHHHHh
Q 027424          205 -EDVNDLISDLDKALR  219 (223)
Q Consensus       205 -Ed~~dL~~dl~~Al~  219 (223)
                       ||++.+++.|++.|+
T Consensus       384 ~~did~~~~~L~~vl~  399 (404)
T d1qz9a_         384 FTEVWDAVQILGEILD  399 (404)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence             445555666666665

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.23  E-value=1.9e-07  Score=78.89  Aligned_cols=106  Identities=18%  Similarity=0.159  Sum_probs=70.9

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHH--------HHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--------LQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~--------~~~~~g~~   71 (223)
                      +||++|++++||++++.+. ..+..++|+|+++.|.||++++++  .+|+++.+++ +.+.+..        .....+..
T Consensus       165 ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g--~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  241 (364)
T d2e7ja1         165 VCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASG--PIGVMGMKEE-WAEIVLRRSEKYKNKEVELLGCT  241 (364)
T ss_dssp             HHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCS--SCEEEEECTT-TTTTTTCBCSSCTTSBGGGTTCC
T ss_pred             ccccccchhhccccchhhhhhhcccccccceeeeccccccCCCC--CEEEEEECHH-HHHHHHhhccccCcccccccccc
Confidence            4899999999999997664 355667899999999999999775  3577777654 2222110        01122333


Q ss_pred             CChHhHHHHHhcHHHHHHH---HHHHHhHHHHHHHHHhcCC
Q 027424           72 LAPFDCWICLRGVKTMALR---VEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~R---~~~~~~na~~la~~L~~~p  109 (223)
                      ......+.++.+++.+..+   +.+..+++..+.+.|++-+
T Consensus       242 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g  282 (364)
T d2e7ja1         242 ARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLG  282 (364)
T ss_dssp             CCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3333456777788776543   4555677888888887765

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=98.22  E-value=1.3e-05  Score=70.54  Aligned_cols=184  Identities=16%  Similarity=0.177  Sum_probs=102.9

Q ss_pred             ccCCEEEEecCCCCCCCcCcccC--CCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHhHHHHH
Q 027424            4 AHGALLLVDNSIMSPVLSRPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL   81 (223)
Q Consensus         4 ~~g~~lvVDnT~~s~~~~~pl~~--GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~da~ll~   81 (223)
                      .+|+.+|+|+.+.-|. +.|+..  --+|++.|+||.++-.|-.+|+++ +.++.+.+++.........+.+...-....
T Consensus       217 ~~~~~~I~DEaY~~~~-f~~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i-~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~  294 (425)
T d2hoxa1         217 IKGCKSIYDMVYYWPH-YTPIKYKADEDILLFTMSKFTGHSGSRFGWAL-IKDESVYNNLLNYMTKNTEGTPRETQLRSL  294 (425)
T ss_dssp             STTCEEEEECTTCSTT-TSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEE-ECCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred             hhCCEEEEeccccCcc-ccchhhhcCCeEEEEeCHHhccCcchheeeEE-eCCHHHHHHHHHhhccCcccCCHHHHHHHH
Confidence            4689999999985442 233332  237999999999988888887766 567777777766554443334443333344


Q ss_pred             hcHHHH---------------HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHH-HhhhCCCCeeEEEEeC-
Q 027424           82 RGVKTM---------------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH-YSQAKGAGSVLSFLTG-  144 (223)
Q Consensus        82 ~~l~tl---------------~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~-~~~~~g~ggl~sf~~~-  144 (223)
                      ..|+..               ....++..++-..+.+.|++.+.   +.+|.+++ +++..+ .......+..+.+... 
T Consensus       295 ~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~---~~l~~~p~-~~~~~f~~~~~~~~~~f~wl~~~~  370 (425)
T d2hoxa1         295 KVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDR---FSYQELPQ-SEYCNYFRRMRPPSPSYAWVKCEW  370 (425)
T ss_dssp             HHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSS---EECCCCCS-CEEETTTTEEECCCCSEEEEEECS
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ceeeccCC-ccceeeeeeccCCCcceeeeeCCC
Confidence            444331               11234455566777788887664   33444332 222111 1111223333334442 


Q ss_pred             -CHHHHHHHHhhcCcce-eccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCC--HHHHHHHHHHHHh
Q 027424          145 -SLALSKHVVETTKYFS-ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED--VNDLISDLDKALR  219 (223)
Q Consensus       145 -~~~~~~~f~~~l~l~~-~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd--~~dL~~dl~~Al~  219 (223)
                       +.+.+.+++..-++.- .|..+                          |..++.||||++-.+  .+.+++-|++.++
T Consensus       371 ~~~~~~~~lL~e~gI~v~pGs~F--------------------------G~~~~yvRisl~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         371 EEDKDCYQTFQNGRINTQNGVGF--------------------------EASSRYVRLSLIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             GGGCSHHHHHHHTTEECEEGGGG--------------------------TSCTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHhCCEEEEechhc--------------------------CCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence             3334566666665542 12222                          324578999987543  3666777777665

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=98.19  E-value=4.6e-06  Score=70.52  Aligned_cols=52  Identities=19%  Similarity=0.157  Sum_probs=39.7

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecC
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG   54 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~   54 (223)
                      +||++|++++||.+.+.+. .++.-++++|+++-|.+|.+.|+.  .+|.+..++
T Consensus       168 ~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~--g~~~~~~~~  220 (377)
T d1vjoa_         168 LCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSP--GASPFTMSS  220 (377)
T ss_dssp             HHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCS--SCEEEEECH
T ss_pred             hhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCC--EEEEecchh
Confidence            3789999999999987653 455667899999999999998764  345454443

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=98.18  E-value=2.3e-06  Score=74.09  Aligned_cols=114  Identities=12%  Similarity=0.101  Sum_probs=85.3

Q ss_pred             CccccCCEEEEecCCCCCC--CcCcccCCCcEEEecc--cccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~--~~~pl~~GADivv~S~--tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|++||.|++.+-+.  .-++.--..|+.+.|+  +|.++..   -||+++++++++.++++.+++.         
T Consensus       144 ~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g---~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~  220 (384)
T d1b9ha_         144 ISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAG---EGGAVVFPDGETEKYETAFLRHSCGRPRDDR  220 (384)
T ss_dssp             HHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSS---SCEEEEECTTCHHHHHHHHHHTBTTCCTTCS
T ss_pred             hhhhhhhhhhhhhceecccccCCEecCcccccceeccccccccccc---ccchhhhhhHHHHHHHHHHHhcCCCCccccc
Confidence            3788999999999975433  2222222358888776  8998743   3899999988888877666532         


Q ss_pred             ------cC--CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           68 ------EG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        68 ------~g--~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                            .|  .-+++..|.++...|+.+..++++..+|+..+.+.|++.+.+..+..+
T Consensus       221 ~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~  278 (384)
T d1b9ha_         221 RYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGD  278 (384)
T ss_dssp             SCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCC
T ss_pred             cccccccccccccccchhhhhhhhhhhcccchhhhhhhhhhhhhhhhccccccccccc
Confidence                  12  226778899999999999999999999999999999999887544433

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=3.7e-05  Score=64.99  Aligned_cols=109  Identities=15%  Similarity=0.059  Sum_probs=63.8

Q ss_pred             ccCCEEEEecCCCCCCCcCc-----ccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChHh--
Q 027424            4 AHGALLLVDNSIMSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD--   76 (223)
Q Consensus         4 ~~g~~lvVDnT~~s~~~~~p-----l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~d--   76 (223)
                      +++..+|+|+++........     ....--+|+.|+||.++-.|..+|.++ . ++++.+.+........  ++...  
T Consensus       174 ~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i-~-~~~~i~~l~~~~~~~~--~~~~~~~  249 (354)
T d1fg7a_         174 RGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTL-A-NEEVINLLMKVIAPYP--LSTPVAD  249 (354)
T ss_dssp             TTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEE-E-CHHHHHHHHHHSCSSC--SCHHHHH
T ss_pred             cccccccccccchhhccccccchhhcccccceEEeCCccccCCCcccccccc-c-cchhhhhhhhhcCccc--hhhHHHH
Confidence            46788999999743221111     112234888999999986788887644 4 4566666654433222  33321  


Q ss_pred             HHHHHhcHH---HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           77 CWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        77 a~ll~~~l~---tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      ........+   ....+.++..++-..+.+.|.+.+.+..+ +|
T Consensus       250 ~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~-~p  292 (354)
T d1fg7a_         250 IAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQV-FD  292 (354)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEE-CC
T ss_pred             HHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCccee-CC
Confidence            122222222   23455566677778888899999887554 45

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=6.9e-06  Score=69.94  Aligned_cols=106  Identities=13%  Similarity=0.141  Sum_probs=59.4

Q ss_pred             CccccCCEEEEecCCCCCCC----cCccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|++++++||.|+.+.-...    ..++.    .+-=|++.|+||.++-.+..+|.++ .. +...+.+...........
T Consensus       189 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~-~~-~~~~~~~~~~~~~~~~~~  266 (375)
T d1o4sa_         189 LAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLI-SS-EKVATAVSKIQSHTTSCI  266 (375)
T ss_dssp             HHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEE-CC-HHHHHHHHHHHHHHTCSC
T ss_pred             hHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCcccccccc-cc-ccchhhhhhhhccccccc
Confidence            37899999999998754322    11111    1223899999999987777876644 44 445555544444433333


Q ss_pred             ChHhHHHHHhcHHHH-HHHHHHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRGVKTM-ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~l~tl-~~R~~~~~~na~~la~~L~~~  108 (223)
                      ............+.. ....+...++...+.+.|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~  303 (375)
T d1o4sa_         267 NTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM  303 (375)
T ss_dssp             CHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhc
Confidence            332222222222222 222344555666677778765

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=98.15  E-value=3.8e-05  Score=65.78  Aligned_cols=105  Identities=14%  Similarity=0.134  Sum_probs=59.0

Q ss_pred             CccccCCEEEEecCCCCCC----CcCccc----CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV----LSRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~----~~~pl~----~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|++|+++||+|+++.--.    ...|+.    .+--+++.|++|.++ .|..+|+++ . ++++.+.+...........
T Consensus       199 ~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~RiG~~i-~-~~~~i~~~~~~~~~~~~~~  275 (403)
T d1wsta1         199 LANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA-PGFRIGWVA-A-HPHLIRKMEIAKQSIDLCT  275 (403)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC-GGGCCEEEE-E-CHHHHHHHHHHHHHHHSSC
T ss_pred             HHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec-Ccccccccc-c-chHHHHHHHHHHhhhcccc
Confidence            4789999999999985321    122222    344599999999984 777776544 4 4556565554443333333


Q ss_pred             ChHhHHHHHhc-----HHHHHHHH-HHHHhHHHHHHHHHhcC
Q 027424           73 APFDCWICLRG-----VKTMALRV-EKQQDNAQKIAEFLASH  108 (223)
Q Consensus        73 sp~da~ll~~~-----l~tl~~R~-~~~~~na~~la~~L~~~  108 (223)
                      ++.........     .+....++ +...++...+.+.|.++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  317 (403)
T d1wsta1         276 NTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEY  317 (403)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence            44322222211     11222332 44455666677777765

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=98.13  E-value=1.9e-05  Score=67.60  Aligned_cols=107  Identities=13%  Similarity=0.109  Sum_probs=60.2

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcccCCC--cEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPLELGA--DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl~~GA--Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +|++++++||.|+++.--.+    ..|+....  -|++.|++|.++-.|..+|+++ . ++++.+.+...........+.
T Consensus       192 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~-~-~~~~i~~~~~~~~~~~~~~~~  269 (382)
T d1b5pa_         192 LAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYAC-G-PKEVIKAMASVSRQSTTSPDT  269 (382)
T ss_dssp             HHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEE-C-CHHHHHHHHHHHHTTTCSCCH
T ss_pred             HHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEE-E-CHHHHHHHHHHHHhcccCccc
Confidence            37899999999999853221    22333222  2899999999987788886644 4 556666665555444434444


Q ss_pred             HhHHHHHhcHH---H---HHHHH-HHHHhHHHHHHHHHhcCC
Q 027424           75 FDCWICLRGVK---T---MALRV-EKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        75 ~da~ll~~~l~---t---l~~R~-~~~~~na~~la~~L~~~p  109 (223)
                      .....+...+.   .   ...++ +...++...+.+.++..+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  311 (382)
T d1b5pa_         270 IAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG  311 (382)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcC
Confidence            32222222222   1   11222 333444555666666643

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.10  E-value=1.8e-05  Score=70.59  Aligned_cols=177  Identities=16%  Similarity=0.195  Sum_probs=104.9

Q ss_pred             CccccCCEEEEecCCCCCCCcC----ccc---CCCcEEEecccccccCCcccceeEEEecChhHHHH--------HHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE--------LYFLQ   65 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl~---~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~--------l~~~~   65 (223)
                      +|+++|+++=||.+||......    .+-   .+||-+.-+.||++..+-  .+|++..++......        +....
T Consensus       260 i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~--~~g~~l~r~~~~~~~~~~~~~~~~~~~~  337 (476)
T d1js3a_         260 ICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF--DCSAMWVKRRTDLTGAFKLDPVYLKHSH  337 (476)
T ss_dssp             HHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESCHHHHHGGGC----------
T ss_pred             HHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCC--cceeecccchHHHHHHHhcChhhhcccc
Confidence            4789999999999998754321    111   168999999999998664  466776776533211        11111


Q ss_pred             HhcC---------C----CCChHhHHHHHh--cHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHh
Q 027424           66 NAEG---------S----GLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  130 (223)
Q Consensus        66 ~~~g---------~----~~sp~da~ll~~--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~  130 (223)
                      ...+         .    .....-.|+.++  |.+-+..++++..+.|+.+++.|+++|.++-+..|             
T Consensus       338 ~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p-------------  404 (476)
T d1js3a_         338 QGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-------------  404 (476)
T ss_dssp             --CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-------------
T ss_pred             ccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC-------------
Confidence            1001         0    011223344444  33446788899999999999999999997544333             


Q ss_pred             hhCCCCeeEEEEe-CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec-C----
Q 027424          131 QAKGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-I----  204 (223)
Q Consensus       131 ~~~g~ggl~sf~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-l----  204 (223)
                          --++++|.+ +..+..+++++++.-  -    |.  -.++ +  +...            ....+|++++ .    
T Consensus       405 ----~l~iV~Fr~~~~d~~n~~l~~~l~~--~----G~--~~~s-~--t~~~------------g~~~lR~~i~n~~Tt~  457 (476)
T d1js3a_         405 ----TLGLVCFRLKGSDGLNEALLERINS--A----RK--IHLV-P--CRLR------------GQFVLRFAICSRKVES  457 (476)
T ss_dssp             ----CSSEEEEEESSCHHHHHHHHHHHHH--H----TS--CBCE-E--EEET------------TEEEEEEECCCTTCCH
T ss_pred             ----ceEEEEEEccCChHHHHHHHHHHHh--c----CC--EEEe-e--eeEC------------CEEEEEEEeCCCCCCH
Confidence                236899988 444444566665421  0    10  0010 1  1100            1236899998 2    


Q ss_pred             CCHHHHHHHHHHHHh
Q 027424          205 EDVNDLISDLDKALR  219 (223)
Q Consensus       205 Ed~~dL~~dl~~Al~  219 (223)
                      ||++.+++.+++..+
T Consensus       458 ~did~~~~~i~~~a~  472 (476)
T d1js3a_         458 GHVRLAWEHIRGLAA  472 (476)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            367778887776544

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=0.00011  Score=63.42  Aligned_cols=81  Identities=9%  Similarity=0.106  Sum_probs=48.0

Q ss_pred             CccccCCEEEEecCCCCCCC----cCcc----cCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL----SRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~----~~pl----~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++++++|+|+++.--.+    ..|.    ..+--+++.|.+|++. .|..+|. ++. ++++.+++...........
T Consensus       211 ~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~-~G~RiG~-~~~-~~~~i~~l~~~~~~~~~~~  287 (420)
T d1vp4a_         211 IAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGM-VAG-SKEFIRKIVQAKQSADLCS  287 (420)
T ss_dssp             HHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEE-EEC-CHHHHHHHHHHHHHHHSSC
T ss_pred             hhhcccccccccchhhhccccCcccccccccccccceeEEeccccccc-ccccccc-ccc-cchhhhhhhhhhhhccccC
Confidence            47899999999999753221    1111    1233477788888875 6777765 544 5567777666555444344


Q ss_pred             ChHhHHHHHhcH
Q 027424           73 APFDCWICLRGV   84 (223)
Q Consensus        73 sp~da~ll~~~l   84 (223)
                      +..........+
T Consensus       288 ~~~~q~~~a~~l  299 (420)
T d1vp4a_         288 PAITHRLAARYL  299 (420)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             chhhhhhhhhhc
Confidence            454333343333

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.06  E-value=4.5e-05  Score=65.70  Aligned_cols=115  Identities=10%  Similarity=0.016  Sum_probs=62.9

Q ss_pred             ccccCCEEEEecCCCCCCC-----cCcccCCC-------cEEEecccccccCCcccceeEEEecCh----hHHHHHHHHH
Q 027424            2 AHAHGALLLVDNSIMSPVL-----SRPLELGA-------DIVMHSATKFIAGHSDVMAGVLAVKGE----RLAKELYFLQ   65 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~-----~~pl~~GA-------Divv~S~tK~l~G~~d~~~G~v~~~~~----~~~~~l~~~~   65 (223)
                      |++++++||+|+++..-.+     ........       =+++.|++|.++..|..+|++++.++.    .+........
T Consensus       203 ~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~  282 (412)
T d1bw0a_         203 AEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG  282 (412)
T ss_dssp             HHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH
T ss_pred             cccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhcccc
Confidence            6789999999999853211     01111111       167889999999889999887654321    2222222222


Q ss_pred             HhcCCCCChHhHHHHH---hcHHH-HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           66 NAEGSGLAPFDCWICL---RGVKT-MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        66 ~~~g~~~sp~da~ll~---~~l~t-l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      .......++..+.+..   ...+. +....++..++...+.+.|.+++++. +..|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~-~~~p  337 (412)
T d1bw0a_         283 MLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA-PTMP  337 (412)
T ss_dssp             HHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-ECCC
T ss_pred             ccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCce-ecCC
Confidence            2222222222222211   12222 33344666777888889998888763 3334

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=98.06  E-value=1.3e-05  Score=68.09  Aligned_cols=52  Identities=21%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             CccccCCEEEEecCCCCC-CCcCcccCCCcEEEecccccccCCcccceeEEEecC
Q 027424            1 MAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG   54 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~   54 (223)
                      +||++|++++||.+-+.+ ..++.-++|+|+++-|.+|.++|+.  -.|++..++
T Consensus       167 ~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~--G~g~~~~~~  219 (388)
T d2ch1a1         167 ICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPP--GITPISISP  219 (388)
T ss_dssp             HHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCS--SCEEEEECH
T ss_pred             hhccccceeeeeeeecccccccchhccCceEEEEccccccCCCC--eEEEEeccH
Confidence            368899999999996544 2355556899999999999999774  345555554

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=98.05  E-value=0.00011  Score=63.85  Aligned_cols=104  Identities=11%  Similarity=0.028  Sum_probs=56.2

Q ss_pred             ccccCCEEEEecCCCCCC-----CcCcccCCC-------------cEEEecccccccCCcccceeEEEecChhHHHHHHH
Q 027424            2 AHAHGALLLVDNSIMSPV-----LSRPLELGA-------------DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF   63 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~-----~~~pl~~GA-------------Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~   63 (223)
                      |+++|++||+|++++.-.     +..+++...             =+++.|++|.++-.+..+|. ++.+++.+.+.+. 
T Consensus       218 a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~-~~~~~~~i~~~~~-  295 (431)
T d1m7ya_         218 VEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGA-IYSNDDMVVAAAT-  295 (431)
T ss_dssp             HHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEE-EEESCHHHHHHHH-
T ss_pred             ccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccce-eccchhhhHHHHH-
Confidence            678999999999975321     111222111             28999999999877777765 5566654433332 


Q ss_pred             HHHhcCCCCChHhHHHHHhcH------HHHHHHH-HHHHhHHHHHHHHHhcC
Q 027424           64 LQNAEGSGLAPFDCWICLRGV------KTMALRV-EKQQDNAQKIAEFLASH  108 (223)
Q Consensus        64 ~~~~~g~~~sp~da~ll~~~l------~tl~~R~-~~~~~na~~la~~L~~~  108 (223)
                      .........++.. ..+...+      +.+..++ ++..++...+.+.|+++
T Consensus       296 ~~~~~~~~~~~~~-~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  346 (431)
T d1m7ya_         296 KMSSFGLVSSQTQ-HLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS  346 (431)
T ss_dssp             HHGGGSCCCHHHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcccccccccc-chhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC
Confidence            2233332333322 1222211      1222222 44455666778888763

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=9.4e-06  Score=71.93  Aligned_cols=184  Identities=14%  Similarity=0.074  Sum_probs=103.3

Q ss_pred             ccccCCEEEEecCCCCCCC--cCccc------CCCcEEEecccccccCCcccceeEEEecChhHHHH-HHHHHHhc----
Q 027424            2 AHAHGALLLVDNSIMSPVL--SRPLE------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAE----   68 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~--~~pl~------~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~-l~~~~~~~----   68 (223)
                      |+++|+++-||.+++.+..  ..|..      .+||-+.-|.||++.++-  -+|++..+++..... +.....+.    
T Consensus       231 a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~yl~~~~  308 (450)
T d1pmma_         231 DTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPL--GCGWVIWRDEEALPQELVFNVDYLGGQI  308 (450)
T ss_dssp             HHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS--SCEEEEESSGGGSCGGGCEEEEETTEEE
T ss_pred             HhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCC--CeeEEEecChhhhhhhcccccCcCCCCc
Confidence            5789999999999876531  11111      279999999999998773  246677776543211 10000000    


Q ss_pred             ---CCCC-Ch----HhHHH--HHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCee
Q 027424           69 ---GSGL-AP----FDCWI--CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  138 (223)
Q Consensus        69 ---g~~~-sp----~da~l--l~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl  138 (223)
                         +... -+    .-.|.  ...+.+-+...+++..++|+.+++.|++.|.+ ++..|+-+..            .-++
T Consensus       309 ~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~-el~~~~~p~~------------~l~~  375 (450)
T d1pmma_         309 GTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPY-EFICTGRPDE------------GIPA  375 (450)
T ss_dssp             EECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCE-EEEEECCTTT------------BSSE
T ss_pred             CCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEeCCCCCC------------ceEE
Confidence               1001 11    12233  33344557788899999999999999999986 4555543211            2357


Q ss_pred             EEEEeCCHH----HHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHH
Q 027424          139 LSFLTGSLA----LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDL  210 (223)
Q Consensus       139 ~sf~~~~~~----~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL  210 (223)
                      ++|.+.+.+    ....+.+.|.-  .|  |     .  .|....    ++     .......+|++|+-    |..|.|
T Consensus       376 V~Fr~~~~~~~~~~~~~l~~~L~~--~G--w-----~--v~~~~~----p~-----~~~~~~~lRvvv~~~~t~e~~d~l  435 (450)
T d1pmma_         376 VCFKLKDGEDPGYTLYDLSERLRL--RG--W-----Q--VPAFTL----GG-----EATDIVVMRIMCRRGFEMDFAELL  435 (450)
T ss_dssp             EEEEECTTCCCSSCHHHHHHHHHT--TT--C-----B--CCEEEC----CT-----TCTTCEEEEEECCTTCCHHHHHHH
T ss_pred             EEEecCCcccCCCCHHHHHHHHHH--cC--C-----e--eeccCc----CC-----CcCCcEEEEEEccCCCCHHHHHHH
Confidence            999873210    11122222211  11  0     0  011100    00     01134579999973    346888


Q ss_pred             HHHHHHHHhc
Q 027424          211 ISDLDKALRT  220 (223)
Q Consensus       211 ~~dl~~Al~~  220 (223)
                      ++||+++++.
T Consensus       436 v~dl~~~v~~  445 (450)
T d1pmma_         436 LEDYKASLKY  445 (450)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8999988764

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=0.0004  Score=59.77  Aligned_cols=113  Identities=13%  Similarity=0.017  Sum_probs=69.6

Q ss_pred             CccccCCEEEEecCCCCCC-----CcCcccC---C-CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPV-----LSRPLEL---G-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-----~~~pl~~---G-ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++++++|.|+++.--.     ...+..+   + =-+++.|+||.++..+..+|+++ + ++++...+..........
T Consensus       199 ~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v-~-~~~~~~~l~~~~~~~~~~  276 (418)
T d1w7la_         199 LCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVL-G-PDHIMKHLRTVHQNSVFH  276 (418)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEE-C-CHHHHHHHHHHHHTTTSC
T ss_pred             HHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccc-c-chhhhhhhcccccccccc
Confidence            3788999999999974321     1122222   1 14889999999998888987755 3 556777776666554444


Q ss_pred             CChHhHHHHHhcHHH-----------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           72 LAPFDCWICLRGVKT-----------MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        72 ~sp~da~ll~~~l~t-----------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      .+......+...+..           +....++..++...+.+.|++.+ + ++..|
T Consensus       277 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~-~~~~P  331 (418)
T d1w7la_         277 CPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG-L-KPLIP  331 (418)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTT-C-EEEEC
T ss_pred             ccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcC-C-cccCC
Confidence            454433333333332           12223555666777888888764 4 45555

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.89  E-value=1.1e-05  Score=70.27  Aligned_cols=166  Identities=12%  Similarity=0.166  Sum_probs=93.9

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--   71 (223)
                      +|+++|+++|+|+... ++       .+.-...-+||+  .+.|.++|..-- .|+++.+ +++.+.+...  ..+.+  
T Consensus       215 lc~~~g~llI~DEV~t-GfgRtG~~~~~e~~gv~PDiv--t~gK~l~gG~~p-~~~v~~~-~~i~~~~~~~--~~~~T~~  287 (404)
T d1z7da1         215 ICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYP-ISAVLAN-DDIMLVIKPG--EHGSTYG  287 (404)
T ss_dssp             HHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSC-CEEEEEC-HHHHTTCCTT--CCCCTTT
T ss_pred             HHHHcCCEEEEEcCcc-CCCcccccccccccCCCCCEE--EEcccccCCCCC-cccccch-HHHHccCCCC--CcCcCCC
Confidence            4899999999999973 32       122222346888  567999863333 4555554 4443322211  22323  


Q ss_pred             CChHhHHHHHhcHHHHH-----HHHHHHHhHH-HHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           72 LAPFDCWICLRGVKTMA-----LRVEKQQDNA-QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~-----~R~~~~~~na-~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      -+|..|...+..|+.+.     .++.+..+.. ..+.+.++++|.|..|+                  |.|.|++|++.+
T Consensus       288 gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vr------------------g~Gl~~~i~~~~  349 (404)
T d1z7da1         288 GNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVR------------------GKGLLCAIEFKN  349 (404)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE------------------EETTEEEEEECT
T ss_pred             CCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEE------------------eeCcEEEEEEcC
Confidence            26777776666666542     2333332222 34556677888887765                  468899999842


Q ss_pred             H-HHHHHHHhh---cCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHH
Q 027424          146 L-ALSKHVVET---TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDKA  217 (223)
Q Consensus       146 ~-~~~~~f~~~---l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~A  217 (223)
                      + ....++...   -+++.             .|                 ...+.|||+    +--|+.+.+++-|++|
T Consensus       350 ~~~~~~~~~~~l~~~Gl~~-------------~~-----------------~~~~~ir~~Ppl~it~~~id~~~~~l~~a  399 (404)
T d1z7da1         350 ELVNVLDICLKLKENGLIT-------------RD-----------------VHDKTIRLTPPLCITKEQLDECTEIIVKT  399 (404)
T ss_dssp             TTCCHHHHHHHHHHTTEEC-------------CE-----------------ETTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHhCCeEE-------------ec-----------------CCCCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence            2 212222221   12221             11                 012345555    5567788999999999


Q ss_pred             HhcC
Q 027424          218 LRTG  221 (223)
Q Consensus       218 l~~~  221 (223)
                      |+..
T Consensus       400 lk~~  403 (404)
T d1z7da1         400 VKFF  403 (404)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8753

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=97.87  E-value=0.00019  Score=62.19  Aligned_cols=106  Identities=10%  Similarity=0.034  Sum_probs=57.1

Q ss_pred             CccccCCEEEEecCCCCCCCcC----cc-c-----------CCCcEEEecccccccCCcccceeEEEecChhHHHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PL-E-----------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL   64 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl-~-----------~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~   64 (223)
                      +|+++|++||+|+.++--.+-.    ++ +           ..--+++.|+||.++..+..+|. ++..++.+.+.+...
T Consensus       216 ~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~-~~~~~~~l~~~~~~~  294 (428)
T d1iaya_         216 FTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGI-IYSFNDDVVNCARKM  294 (428)
T ss_dssp             HHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEE-EEESCHHHHHHHHHH
T ss_pred             eeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCccccc-ccccccchhhhhhhh
Confidence            4789999999999975321110    10 0           01128899999999876777765 545666666555444


Q ss_pred             HHhcCCCCChHhHHH-H-Hh---cHHHH-HHHHHHHHhHHHHHHHHHhcC
Q 027424           65 QNAEGSGLAPFDCWI-C-LR---GVKTM-ALRVEKQQDNAQKIAEFLASH  108 (223)
Q Consensus        65 ~~~~g~~~sp~da~l-l-~~---~l~tl-~~R~~~~~~na~~la~~L~~~  108 (223)
                      .. .+...++....+ . +.   .++.+ ....++..++...+.+.|+..
T Consensus       295 ~~-~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~  343 (428)
T d1iaya_         295 SS-FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             HT-TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hc-ccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC
Confidence            33 232222321111 1 11   11222 222344455666777888753

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=97.86  E-value=0.00011  Score=63.37  Aligned_cols=113  Identities=19%  Similarity=0.073  Sum_probs=66.7

Q ss_pred             CccccCCEEEEecCCCCCCC-----cCcccC-C---CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC
Q 027424            1 MAHAHGALLLVDNSIMSPVL-----SRPLEL-G---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~-----~~pl~~-G---ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~   71 (223)
                      +|+++|+++|.|+.+.--..     ..+..+ +   --+++.|++|.++..|..+|.++ . ++.+.+.+..........
T Consensus       199 ~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~-~-~~~~i~~~~~~~~~~~~~  276 (418)
T d2r5ea1         199 LCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAY-G-PEALLKNLQMVHQNCVYT  276 (418)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEE-S-CHHHHHHHHHHHTTTTCS
T ss_pred             hhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCccccccc-c-cchhhhhhhhcccccccc
Confidence            37889999999999843211     111121 1   12889999999988888887644 3 556666666555444434


Q ss_pred             CChHhHHHHHhcHHH----------HHHHH-HHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           72 LAPFDCWICLRGVKT----------MALRV-EKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        72 ~sp~da~ll~~~l~t----------l~~R~-~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                      .+......+...+.+          ...++ +...++...+.+.|++.. + ++..|
T Consensus       277 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~-~~~~P  331 (418)
T d2r5ea1         277 CATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG-M-NPTVP  331 (418)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTT-C-EEEEC
T ss_pred             cccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcC-C-cccCC
Confidence            444323333333322          22233 444556677888898763 3 55556

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=97.72  E-value=0.0036  Score=50.01  Aligned_cols=134  Identities=15%  Similarity=0.075  Sum_probs=68.7

Q ss_pred             CccccCCEEEEecCCCCCC----C--cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCCh
Q 027424            1 MAHAHGALLLVDNSIMSPV----L--SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP   74 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~----~--~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp   74 (223)
                      +||++|+++++|.++....    .  .......++....+..|..+|..  .++....................+....+
T Consensus       163 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (345)
T d1v72a1         163 VCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVL--AAEAIVLFNTSLATEMSYRRKRAGHLSSK  240 (345)
T ss_dssp             HHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCS--SCEEEEESSGGGHHHHHHHHHHTTCCCSS
T ss_pred             HHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccc--cccccccchhhhhhhccccccccccccch
Confidence            4789999999999964210    1  11111223333333344444322  33444445544433222222222322222


Q ss_pred             HhHHHHHhcHH-----HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHH
Q 027424           75 FDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  149 (223)
Q Consensus        75 ~da~ll~~~l~-----tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~  149 (223)
                       ..........     ....+..+..+....+++.+.++|.+ .+..|+                .+.++.|.++ .+.+
T Consensus       241 -~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~p~----------------~~niv~~~~~-~~~~  301 (345)
T d1v72a1         241 -MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGV-EVLGGT----------------EANILFCRLD-SAMI  301 (345)
T ss_dssp             -THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTE-EEESCC----------------CSSEEEEEEC-HHHH
T ss_pred             -hhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCc-EeccCC----------------CccEEEEEcC-HHHH
Confidence             1222222222     23455677778888999999999987 566662                2457777774 3445


Q ss_pred             HHHHhh
Q 027424          150 KHVVET  155 (223)
Q Consensus       150 ~~f~~~  155 (223)
                      +++.++
T Consensus       302 ~~L~~~  307 (345)
T d1v72a1         302 DALLKA  307 (345)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            554443

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=8e-05  Score=65.04  Aligned_cols=172  Identities=17%  Similarity=0.284  Sum_probs=96.3

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--C
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--L   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--~   72 (223)
                      +|+++|+++|+|+....-      +.+.-...-+||++  +.|.++| +--+++ ++.++ ++.+.+..  ...|.+  -
T Consensus       227 lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~g-G~P~~a-v~~~~-~i~~~~~~--~~~~~T~~g  299 (425)
T d1sffa_         227 LCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAG-GFPLAG-VTGRA-EVMDAVAP--GGLGGTYAG  299 (425)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGT-SSCCEE-EEEEH-HHHTTSCT--TSBCCSSSS
T ss_pred             HHHHcCceEEeccccccCCCcchhhHHHhcCCCcccee--cccccCC-CcceEE-EEEcH-HHHHhhCC--CCCCCCCCc
Confidence            489999999999996431      12222334479888  6799987 444554 54554 44332211  122222  3


Q ss_pred             ChHhHHHHHhcHHHHHHH--HHHHHhHHH----HHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC--
Q 027424           73 APFDCWICLRGVKTMALR--VEKQQDNAQ----KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--  144 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R--~~~~~~na~----~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~--  144 (223)
                      +|..+...+..|+.+...  .++..+...    .+.+.++++|.|..|.                  |.|.|++|++.  
T Consensus       300 npl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vr------------------g~Gl~~~i~f~~~  361 (425)
T d1sffa_         300 NPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVR------------------GLGAMIAIELFED  361 (425)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEE------------------EETTEEEEEEBGG
T ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEE------------------ccccEEEEEEecc
Confidence            677777777777776321  122222222    3344566788877766                  46889999872  


Q ss_pred             ------CHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHH
Q 027424          145 ------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDL  214 (223)
Q Consensus       145 ------~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl  214 (223)
                            +.+...+|.+.+  +..+.-+        .+               .|...+.|||+    +--||.++.++-|
T Consensus       362 ~~~~~~~~~~~~~~~~~l--~~~Gvl~--------~~---------------~g~~~n~i~~~PpL~it~~eid~~l~~l  416 (425)
T d1sffa_         362 GDHNKPDAKLTAEIVARA--RDKGLIL--------LS---------------CGPYYNVLRILVPLTIEDAQIRQGLEII  416 (425)
T ss_dssp             GCTTSBCHHHHHHHHHHH--HHTTEEC--------EE---------------ESTTSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred             CccCCccHHHHHHHHHHH--HHCCCEE--------ec---------------cCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence                  123344444432  1111000        00               11123446665    4556788899999


Q ss_pred             HHHHhcCC
Q 027424          215 DKALRTGP  222 (223)
Q Consensus       215 ~~Al~~~~  222 (223)
                      +++|+.+.
T Consensus       417 ~~al~eik  424 (425)
T d1sffa_         417 SQCFDEAK  424 (425)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99988654

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=97.70  E-value=0.00081  Score=55.84  Aligned_cols=178  Identities=11%  Similarity=0.002  Sum_probs=91.9

Q ss_pred             CccccCCEEEEecCCCCC-CCcCcccCCCcEEEecccccccCCcccceeEEEecChhH--------HHHHHHHH--HhcC
Q 027424            1 MAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELYFLQ--NAEG   69 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~--------~~~l~~~~--~~~g   69 (223)
                      +||++|++++||.+-+-+ ...+.-++|+|+...|..|.++|+    +|++...+...        ........  ....
T Consensus       161 ~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (360)
T d1w23a_         161 FPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGV----TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLY  236 (360)
T ss_dssp             CCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTC----EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCS
T ss_pred             ccccceeeEEeeccccccccccccccccceEEeeccccccCCc----ceeeEechhhhcccccCCcchhhhhhhhhhhhc
Confidence            589999999999996544 234455678888888888877664    34343322110        00001111  1111


Q ss_pred             CCCChHhHHHHHhcHHH------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           70 SGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        70 ~~~sp~da~ll~~~l~t------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      ....+...+.....+..      ...+.++...++.....+.............     +.       .+ .-++++|.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------~r-S~~vvsf~i  303 (360)
T d1w23a_         237 NTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE-----KG-------SR-SLMNVTFNL  303 (360)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC-----GG-------GB-CSSEEEEEC
T ss_pred             ccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCC-----hh-------hc-ceeEEEEEc
Confidence            12222112222222221      1333455566666666777776654332211     11       11 246899998


Q ss_pred             CCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHh
Q 027424          144 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALR  219 (223)
Q Consensus       144 ~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lEd~~dL~~dl~~Al~  219 (223)
                      .+....+.|+..+.--.+.. +.|+.++                        +-+|+|+-    .||++.|++-+++=.+
T Consensus       304 ~~~~~~~~~~~~l~~~GI~~-~~G~~~~------------------------ggiRiS~~~~~t~e~V~~Li~~~~~~~~  358 (360)
T d1w23a_         304 RNEELNQQFLAKAKEQGFVG-LNGHRSV------------------------GGCRASIYNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             SSHHHHHHHHHHHHHTTEES-CBCCTTT------------------------CSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHCCCee-eeCCCcc------------------------CcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence            66555666665543222221 1222211                        12899985    3788888887776444


Q ss_pred             c
Q 027424          220 T  220 (223)
Q Consensus       220 ~  220 (223)
                      +
T Consensus       359 ~  359 (360)
T d1w23a_         359 N  359 (360)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=97.65  E-value=0.0002  Score=61.76  Aligned_cols=119  Identities=16%  Similarity=0.294  Sum_probs=70.9

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC--
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~--   72 (223)
                      +|+++|+++|+|+.....      +.+.-...-+||++-  .|.++|. -.+++++ ... ++...+.  ....|.+.  
T Consensus       206 lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~--gK~l~gG-~~~~~~~-~~~-~~~~~~~--~~~~g~T~~g  278 (387)
T d1vefa1         206 ITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTL--AKALGGG-VPLGVAV-MRE-EVARSMP--KGGHGTTFGG  278 (387)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTT-SSCEEEE-EEH-HHHHTSC--TTSSCCSSTT
T ss_pred             HHHHcCceEEecccccccCccCCCcccccCCcCCceeee--cccCCCC-ccccccc-cce-eeeeccc--cCCccccCCC
Confidence            489999999999997321      122222233688875  5888863 3455544 433 3322211  11234333  


Q ss_pred             ChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHhc--CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           73 APFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLAS--HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~~--~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                      +|..|......|+.+...  .++..+....+.+.|++  +|.|..|+                  |.|.|++|++.
T Consensus       279 nPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~v~~vr------------------g~Gl~~~ie~~  336 (387)
T d1vefa1         279 NPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVR------------------GMGLMVGLELK  336 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEEE------------------EETTEEEEEES
T ss_pred             CcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcCCCceEEEe------------------ecceEEEEEEe
Confidence            688787777777776432  35555556666666664  45555543                  57889999984

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=97.64  E-value=0.00011  Score=62.46  Aligned_cols=109  Identities=16%  Similarity=0.176  Sum_probs=83.7

Q ss_pred             CccccCCEEEEecCCCCC--CCcCcccCCCcEEEecc--cccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSP--VLSRPLELGADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~--~~~~pl~~GADivv~S~--tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|++||-|++.+-+  +.-++.--.-|+.+.|+  +|.++..   -||+++++++++.++++..++.         
T Consensus       142 ~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g---~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~  218 (371)
T d2fnua1         142 LCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKKDFFE  218 (371)
T ss_dssp             HHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEESSSSC
T ss_pred             cccccchhhccchhhccCceeccccCCccccccccccccccccccc---cceEEEeechhhhhhcccccccccccccccc
Confidence            368899999999986443  33233323358888888  8998854   3899999999888887765421         


Q ss_pred             -----cC--CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCee
Q 027424           68 -----EG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  112 (223)
Q Consensus        68 -----~g--~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~  112 (223)
                           .|  .-++...|.+.+..|+.+...+++..+++....+.|++.+.+.
T Consensus       219 ~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~  270 (371)
T d2fnua1         219 GEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFT  270 (371)
T ss_dssp             EEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred             cccccccccccccchhhhhhhhhhhhccchhhhhhhhhhhhccccccccccc
Confidence                 12  2367788999999999999999999999999999999998764

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00041  Score=60.60  Aligned_cols=122  Identities=16%  Similarity=0.190  Sum_probs=68.1

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-H--hcCCC
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-N--AEGSG   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~--~~g~~   71 (223)
                      +|+++|+++|+|++....      +.+.-...-.||++.  .|.++|..--+++ ++.+ +++.+.+.... .  ..+.+
T Consensus       234 lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~--gK~l~gG~~p~~a-v~~~-~~i~~~~~~~~~~~~~~~~T  309 (429)
T d1s0aa_         234 ICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCL--GKALTGGTMTLSA-TLTT-REVAETISNGEAGCFMHGPT  309 (429)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTSSSCCEE-EEEC-HHHHHHHHTSTTSSCSCCCT
T ss_pred             HHHHcCcceehhhccccccccccccccccceeccccccc--ccccccccccccc-hhhH-HHHHhccCCCCCcceeecCC
Confidence            478999999999996321      223333344699885  5888764444544 5454 45554432110 0  01112


Q ss_pred             --CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHH---hcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeC
Q 027424           72 --LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL---ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  144 (223)
Q Consensus        72 --~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L---~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~  144 (223)
                        -+|..+...+..|+.+..  -+++..+....+.+.|   +++|.|..|+                  |.|.|+.|++.
T Consensus       310 ~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vr------------------g~Gl~~~~e~~  371 (429)
T d1s0aa_         310 FMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVR------------------VLGAIGVVETT  371 (429)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEE------------------EETTEEEEEES
T ss_pred             CCCCcccchhhhccccccccccccchhhHHHHHHHHHHHHhccCCceEEEe------------------ecccEEEEEec
Confidence              367777777777776532  1223333333344433   4456665554                  56889999984

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=0.0003  Score=60.05  Aligned_cols=52  Identities=19%  Similarity=0.076  Sum_probs=36.0

Q ss_pred             CccccCCEEEEecCCCCCCCc-----Cccc-----CCCcEEEecccccccCCcccceeEEEe
Q 027424            1 MAHAHGALLLVDNSIMSPVLS-----RPLE-----LGADIVMHSATKFIAGHSDVMAGVLAV   52 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~-----~pl~-----~GADivv~S~tK~l~G~~d~~~G~v~~   52 (223)
                      +|+++++++|.|+++..-..-     .++.     ..-.+++.|.+|.++-.|..+|+++..
T Consensus       200 la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~  261 (396)
T d2q7wa1         200 LSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLV  261 (396)
T ss_dssp             HHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred             HHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccc
Confidence            478999999999998532211     0111     122488889999999888888876643

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=97.56  E-value=0.0007  Score=58.02  Aligned_cols=171  Identities=9%  Similarity=0.055  Sum_probs=94.3

Q ss_pred             CccccCCEEEEecCCCCCCCcC----c--c----cC-CCcEEEecccccccCCcccceeEEEecChhHH--HHH----HH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----P--L----EL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLA--KEL----YF   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----p--l----~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~--~~l----~~   63 (223)
                      +|++|+++||.|+.+.--..-.    +  .    .. --.+++.|.+|.++..+..+|+++. .+....  .++    ..
T Consensus       211 la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~-~~~~~~~~~~~~~~~~~  289 (412)
T d1ajsa_         211 VMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTV-VAKEPDSILRVLSQMQK  289 (412)
T ss_dssp             HHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEE-ECSSHHHHHHHHHHHHH
T ss_pred             HHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCcccccc-chhHHHHHHHHHHHHHH
Confidence            4789999999999985432211    0  0    00 1248889999999998988887664 332221  111    11


Q ss_pred             HHHhcCCCCChHhHHHHHhcHH----------HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhC
Q 027424           64 LQNAEGSGLAPFDCWICLRGVK----------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  133 (223)
Q Consensus        64 ~~~~~g~~~sp~da~ll~~~l~----------tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~  133 (223)
                      .....-...+....+.+..-+.          .+....++..++...+.+.|+++..      |+.     .....    
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~------~~~-----~~~i~----  354 (412)
T d1ajsa_         290 IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT------PGT-----WNHIT----  354 (412)
T ss_dssp             HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------SSC-----CHHHH----
T ss_pred             HhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCC-----eeeec----
Confidence            1111111222332332222221          1223335566677778888887642      111     01111    


Q ss_pred             CCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe-cC--CCHHHH
Q 027424          134 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-GI--EDVNDL  210 (223)
Q Consensus       134 g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv-Gl--Ed~~dL  210 (223)
                      -.||+|++.--+.+.++++++.-+++                                 +.++ .|||+ |+  |+.+.+
T Consensus       355 ~~~G~F~~~~ls~~~v~~L~~e~gV~---------------------------------~vpg-~Ri~~ag~~~~~i~~~  400 (412)
T d1ajsa_         355 DQIGMFSFTGLNPKQVEYLINQKHIY---------------------------------LLPS-GRINMCGLTTKNLDYV  400 (412)
T ss_dssp             HCCSSEEECCCCHHHHHHHHHTTCEE---------------------------------CCTT-SEEEGGGCCTTTHHHH
T ss_pred             CCCeEEEecCCCHHHHHHHHHhCCEE---------------------------------EeCC-CeEEeccCCHHHHHHH
Confidence            14778876433566666655544332                                 0111 29997 54  678999


Q ss_pred             HHHHHHHHhcC
Q 027424          211 ISDLDKALRTG  221 (223)
Q Consensus       211 ~~dl~~Al~~~  221 (223)
                      .+.+++|+++.
T Consensus       401 a~aI~~av~~~  411 (412)
T d1ajsa_         401 ATSIHEAVTKI  411 (412)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=6.1e-05  Score=65.56  Aligned_cols=168  Identities=14%  Similarity=0.179  Sum_probs=91.6

Q ss_pred             CccccCCEEEEecCCCCCC-------CcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCC--
Q 027424            1 MAHAHGALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG--   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-------~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~--   71 (223)
                      +|+++|+++|+|+.. +++       .+.-...-.||+  .+.|.++|..--+ |+++.+ +++.+.+...  ..+.+  
T Consensus       217 lc~~~g~llI~DEV~-tGfgR~G~~~a~~~~gv~PDi~--~~gK~l~gG~~p~-~av~~~-~~i~~~~~~~--~~~~T~~  289 (404)
T d2byla1         217 LCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPV-SAVLCD-DDIMLTIKPG--EHFSTYG  289 (404)
T ss_dssp             HHHHHTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCC-EEEEEC-HHHHTTSCTT--SSCCSST
T ss_pred             HHHhcCeEEEeeccc-cccccccccchhhhcCCCCCEE--EECchhhCCCccc-eeeeec-hhhhhccCCC--CCCcCCC
Confidence            478999999999986 332       122222235988  5679999743344 445454 4554332211  12222  


Q ss_pred             CChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHHhc--CCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC--
Q 027424           72 LAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLAS--HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--  145 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L~~--~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~--  145 (223)
                      -+|..|...+..|+.+...  +++..+....+.+.|++  ++.|..|                  +|.|.|++|++.+  
T Consensus       290 gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~i~~v------------------Rg~Gl~~~i~~~~~~  351 (404)
T d2byla1         290 GNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAV------------------RGKGLLNAIVIKETK  351 (404)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSCTTTEEEE------------------EEETTEEEEEECCCS
T ss_pred             cCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHHHHHHhhccccceee------------------eecccEEEEEEecCC
Confidence            3687787777777776432  23333333444454543  2334433                  4678899998732  


Q ss_pred             HHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHhc
Q 027424          146 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       146 ~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~dl~~Al~~  220 (223)
                      ...+.++..++  +..+.        +..|.                 ..+.|||+    +--||.++.++-|++||..
T Consensus       352 ~~~~~~~~~~l--~~~Gv--------l~~~~-----------------~~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         352 DWDAWKVCLRL--RDNGL--------LAKPT-----------------HGDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             SCCHHHHHHHH--HHTTE--------ECEEE-----------------ETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHH--HhCCe--------EEecC-----------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence            22233444332  11111        00110                 12456666    5567788899999998864

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=97.53  E-value=0.00076  Score=58.00  Aligned_cols=171  Identities=13%  Similarity=0.122  Sum_probs=91.4

Q ss_pred             CccccCCEEEEecCCCCCCCcC----cc---------cC-CCcEEEecccccccCCcccceeEEEecCh-----hHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PL---------EL-GADIVMHSATKFIAGHSDVMAGVLAVKGE-----RLAKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl---------~~-GADivv~S~tK~l~G~~d~~~G~v~~~~~-----~~~~~l   61 (223)
                      +|+++++++|.|+.+..-....    +.         .. .--|++.|++|.++-.|..+|+++...+.     ...+.+
T Consensus       204 ~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~  283 (412)
T d1yaaa_         204 AIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAV  283 (412)
T ss_dssp             HHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHH
T ss_pred             hhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHH
Confidence            4789999999999985322211    10         10 11289999999999888898876654321     111111


Q ss_pred             ----HHHHHhcCCCCChHhHHHHHhcHHH----------HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHH
Q 027424           62 ----YFLQNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  127 (223)
Q Consensus        62 ----~~~~~~~g~~~sp~da~ll~~~l~t----------l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~  127 (223)
                          ......+-.+.+......+..-++.          +....++..++...+.+.|+++..-..+.         +  
T Consensus       284 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~---------~--  352 (412)
T d1yaaa_         284 TSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWD---------H--  352 (412)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCT---------H--
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc---------e--
Confidence                1111112222333333433333221          22333455566677778887763210110         0  


Q ss_pred             HHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEe-cC--
Q 027424          128 HYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-GI--  204 (223)
Q Consensus       128 ~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsv-Gl--  204 (223)
                      .    ...|||+++.--+.+.++++++.-.++-                                 +++ .|||+ |+  
T Consensus       353 ~----~~~gG~F~~~~ls~e~~~~L~~e~~V~~---------------------------------~~g-~Ris~~g~~~  394 (412)
T d1yaaa_         353 I----VNQCGMFSFTGLTPQMVKRLEETHAVYL---------------------------------VAS-GRASIAGLNQ  394 (412)
T ss_dssp             H----HHCCSSEEECCCCHHHHHHHHHHHCEEC---------------------------------CTT-SEEEGGGCCT
T ss_pred             e----CCCceEEEecCcCHHHHHHHHHhCCEEE---------------------------------CCC-CEEEeccCCH
Confidence            0    1147888774335666666655533320                                 111 38987 44  


Q ss_pred             CCHHHHHHHHHHHHhc
Q 027424          205 EDVNDLISDLDKALRT  220 (223)
Q Consensus       205 Ed~~dL~~dl~~Al~~  220 (223)
                      ++++-|.+-|.++++.
T Consensus       395 ~~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         395 GNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            5678888888888764

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=97.51  E-value=0.001  Score=56.76  Aligned_cols=139  Identities=8%  Similarity=-0.029  Sum_probs=73.1

Q ss_pred             CccccCCEEEEecCCCCCCCcC----cc------cCCC-cEEEecccccccCCcccceeEEEecChhHHH--H----HHH
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PL------ELGA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAK--E----LYF   63 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl------~~GA-Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~--~----l~~   63 (223)
                      +|+++++++|.|+++.--..-.    +.      ..+. -+++.|++|.++-.|..+|+++. ..+....  +    +..
T Consensus       203 ~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~-~~~~~~~~~~~~~~~~~  281 (401)
T d7aata_         203 VVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTV-ICRDAEEAKRVESQLKI  281 (401)
T ss_dssp             HHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEE-ECSSHHHHHHHHHHHHH
T ss_pred             HHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeec-chHHHHHHHHHHHHHHH
Confidence            4789999999999985332211    11      1111 27888999999888888877664 4332211  1    111


Q ss_pred             HH-HhcCCCCChHhHHHHHhcHH----------HHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhh
Q 027424           64 LQ-NAEGSGLAPFDCWICLRGVK----------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  132 (223)
Q Consensus        64 ~~-~~~g~~~sp~da~ll~~~l~----------tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~  132 (223)
                      .. .... ..+......+..-++          .+....++..++...+.+.|+++..-..+           ...    
T Consensus       282 ~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-----------~~~----  345 (401)
T d7aata_         282 LIRPMYS-NPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNW-----------QHI----  345 (401)
T ss_dssp             HHHHHHS-SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC-----------HHH----
T ss_pred             Hhhcccc-ccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-----------ceE----
Confidence            11 2222 223333333333222          12233355566778888999887521111           001    


Q ss_pred             CCCCeeEEEEeCCHHHHHHHHhhc
Q 027424          133 KGAGSVLSFLTGSLALSKHVVETT  156 (223)
Q Consensus       133 ~g~ggl~sf~~~~~~~~~~f~~~l  156 (223)
                      .-.||+|++.--+.+.++++++.-
T Consensus       346 ~~~~G~F~~~~ls~e~~~~L~~e~  369 (401)
T d7aata_         346 TDQIGMFCFTGLKPEQVERLTKEF  369 (401)
T ss_dssp             HHCCSSEEECCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCCHHHHHHHHHhC
Confidence            114788876423566666655543

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.49  E-value=0.0004  Score=58.48  Aligned_cols=49  Identities=20%  Similarity=0.163  Sum_probs=35.5

Q ss_pred             cccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecC
Q 027424            3 HAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG   54 (223)
Q Consensus         3 ~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~   54 (223)
                      +..|+.++||.+...+. ..+.-++|+|+++-|.+|++++++   +|++..++
T Consensus       168 ~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G---~~~l~~~~  217 (376)
T d1eg5a_         168 KNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKG---VGITYIRK  217 (376)
T ss_dssp             HCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTT---CEEEEECT
T ss_pred             cccCceeEEEeeeccccccccccccCccceecccceeecCCC---ceeEEecc
Confidence            45699999999976654 344446789999999999987654   34444454

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=97.47  E-value=0.00023  Score=62.01  Aligned_cols=120  Identities=16%  Similarity=0.195  Sum_probs=67.8

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCC--CC
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS--GL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~--~~   72 (223)
                      +|+++|+++|+|+.....      +.+.-...-+||++-  .|.++|. -.+++++ ... ++......-....+.  .-
T Consensus       230 lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~--gK~l~gG-~p~~av~-~~~-~~~~~~~~~~~~~~~T~~g  304 (431)
T d1zoda1         230 KCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTL--SKTLGAG-LPLAAIV-TSA-AIEERAHELGYLFYTTHVS  304 (431)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CHHHHTT-SSCEEEE-ECH-HHHHHHHHTTCCCCCTTTT
T ss_pred             HHHhcCceEEeccccccccccccccccccCCCCcchhcc--ccccccc-cccceee-eee-cchhhhhcccccccCCCCC
Confidence            489999999999997421      112212223688875  5988864 4555544 443 343333221111222  24


Q ss_pred             ChHhHHHHHhcHHHH-----HHHHHHHHhHHH-HHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEe
Q 027424           73 APFDCWICLRGVKTM-----ALRVEKQQDNAQ-KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  143 (223)
Q Consensus        73 sp~da~ll~~~l~tl-----~~R~~~~~~na~-~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~  143 (223)
                      +|..|......|+.+     ..+.++..+... .+.+.++++|.|..|.                  |.|.|++|++
T Consensus       305 ~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vr------------------G~Glm~~ie~  363 (431)
T d1zoda1         305 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVR------------------GRGLLLGVEI  363 (431)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE------------------EETTEEEEEE
T ss_pred             CcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEe------------------ecceEEEEEE
Confidence            666666666666553     233333333332 2445566788877765                  5788999987

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.0011  Score=54.63  Aligned_cols=40  Identities=13%  Similarity=-0.018  Sum_probs=30.6

Q ss_pred             ccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCc
Q 027424            2 AHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHS   43 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~   43 (223)
                      +|.+++.++||.+.+.+. ..+.  .++|+++-|.+|.++++.
T Consensus       162 ~~~~~~~v~vDa~~~~~~~~vd~--~~~dv~~~ss~k~~~~~~  202 (360)
T d1bjna_         162 DFGADVVVAADFSSTILSRPIDV--SRYGVIYAGAQKNIGPAG  202 (360)
T ss_dssp             CCCTTCCEEEECTTTTTSSCCCG--GGCSEEEEETTTTTSSTT
T ss_pred             cccccceeeeeeeccccceeeee--ccceeEEEEcccccccCC
Confidence            678899999999865432 2222  478999999999999774

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=97.43  E-value=0.00032  Score=61.80  Aligned_cols=106  Identities=18%  Similarity=0.089  Sum_probs=71.2

Q ss_pred             CccccCCEEEEecCCCC-----------CCCcCcc-------cCCCcEEEecccccccCCcccceeEEEecChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMS-----------PVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-----------~~~~~pl-------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~   62 (223)
                      +|+++|+++++|++...           .+....+       --.||++..|++|.+++.   .||+++.+++.+.++++
T Consensus       203 ~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~---~GG~i~~~~~~l~~~~r  279 (456)
T d1c7ga_         203 MASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVN---IGGFLCMNDEEMFSAAK  279 (456)
T ss_dssp             HHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS---SCEEEEESCHHHHHHHH
T ss_pred             HHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEecccccccc---ceeEEEcCCHHHHHHHH
Confidence            48999999999998521           1111111       124899999999999865   58999889888877766


Q ss_pred             HHHHhcCC-----CCChHhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHhcCC
Q 027424           63 FLQNAEGS-----GLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        63 ~~~~~~g~-----~~sp~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ......+.     .++..++..+..++...  ...+++..++++++++.|++..
T Consensus       280 ~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~g  333 (456)
T d1c7ga_         280 ELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREAG  333 (456)
T ss_dssp             HHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence            54332221     23444555555555543  3446777888999999999863

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.42  E-value=0.00018  Score=60.52  Aligned_cols=108  Identities=16%  Similarity=0.176  Sum_probs=77.2

Q ss_pred             CccccCCEEEEecCCCCCCCcCcccCC-CcEEEec--ccccccCCcccceeEEEecChhHHHHHHHHHHh----------
Q 027424            1 MAHAHGALLLVDNSIMSPVLSRPLELG-ADIVMHS--ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA----------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~pl~~G-ADivv~S--~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~----------   67 (223)
                      +|+++|++||.|++.+-+...+....| -|..+.|  .+|.++..   -||+++++++++.++++.++..          
T Consensus       141 i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g---~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~  217 (376)
T d1mdoa_         141 LGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCA---EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQ  217 (376)
T ss_dssp             HHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSS---SCEEEEESCHHHHHHHHHHTBTTEECC-----
T ss_pred             HHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCCCCCC---CCCEEEEechhHHHHHHhhcccCCcccccccc
Confidence            478999999999997544322222222 2345555  46988742   4899999998887776654311          


Q ss_pred             --------------cCCCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCe
Q 027424           68 --------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV  111 (223)
Q Consensus        68 --------------~g~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v  111 (223)
                                    .-.-++...+.+....|+.+...+++..+++..+.+.|++.+.+
T Consensus       218 ~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~  275 (376)
T d1mdoa_         218 SGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQ  275 (376)
T ss_dssp             ------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCE
T ss_pred             cccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhccccccc
Confidence                          11235667788888889999999999999999999999988764

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.36  E-value=0.00035  Score=59.05  Aligned_cols=106  Identities=18%  Similarity=0.149  Sum_probs=79.8

Q ss_pred             CccccCCEEEEecCCCCCC--CcCcccCCCcEEEeccc--ccccCCcccceeEEEecChhHHHHHHHHHHh---------
Q 027424            1 MAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------   67 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~--~~~pl~~GADivv~S~t--K~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~---------   67 (223)
                      +|+++|++||-|++.+-+.  .-+++---.|+.+.|+.  |.++..   -||+++++++++.++++.++..         
T Consensus       133 ~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~~K~l~tg---eGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~  209 (374)
T d1o69a_         133 ICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTS---GGGMLIGKNKEKIEKARFYSTQARENCLHYE  209 (374)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTCCCSSSSCC
T ss_pred             HhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccCccccccc---cceeehhhhHHHHHhhccccccccccccccc
Confidence            4789999999999964433  22233223699999995  888643   3788989998888777655321         


Q ss_pred             ---cC--CCCChHhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 027424           68 ---EG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        68 ---~g--~~~sp~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p  109 (223)
                         .|  .-++...|.+....|+.+..++++..+++....+.|...+
T Consensus       210 ~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~~~  256 (374)
T d1o69a_         210 HLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEYF  256 (374)
T ss_dssp             CSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             cccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHHHhhccccc
Confidence               12  2378888999999999999999999999999999998754

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.0067  Score=51.08  Aligned_cols=104  Identities=7%  Similarity=-0.049  Sum_probs=59.1

Q ss_pred             ccccCCEEEEecCCCCCCC-----cCcccC--CC--cEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            2 AHAHGALLLVDNSIMSPVL-----SRPLEL--GA--DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~-----~~pl~~--GA--Divv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +.++++.++.|+.+.-...     ..++..  ..  -|++.|++|.++-.|..+|+++ + ++++.+.+.........+.
T Consensus       188 ~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v-~-~~~~~~~~~~~~~~~~~~~  265 (382)
T d1u08a_         188 IAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCV-A-PAPISAEIRKVHQYLTFSV  265 (382)
T ss_dssp             HTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEE-C-CHHHHHHHHHHHHHHTSSC
T ss_pred             hccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhh-c-cchhHHHHHhhhccccccc
Confidence            5678889998888643221     111111  11  2899999999987788887754 4 5566666665555444445


Q ss_pred             ChHhHHHHHhcHHH----HHHHHHHHHhHHHHHHHHHhc
Q 027424           73 APFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS  107 (223)
Q Consensus        73 sp~da~ll~~~l~t----l~~R~~~~~~na~~la~~L~~  107 (223)
                      +...-..+...++.    +....++..++...+.+.++.
T Consensus       266 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (382)
T d1u08a_         266 NTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE  304 (382)
T ss_dssp             CHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS
T ss_pred             ccccccccccccccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence            55433344444432    222234444455566666654

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=97.33  E-value=0.0042  Score=51.63  Aligned_cols=41  Identities=15%  Similarity=-0.023  Sum_probs=29.8

Q ss_pred             CccccCCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCc
Q 027424            1 MAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHS   43 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~   43 (223)
                      +||++|++++||.+-+.+. ..+.-+  .|+.+-|.+|.++.++
T Consensus       161 ~~~~~~al~~vDavss~g~~~id~~~--~di~~~s~~k~~~~~~  202 (361)
T d2c0ra1         161 FPDTGSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNLGPSG  202 (361)
T ss_dssp             CCCCTTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTCCSS
T ss_pred             eeccCCceEEEEeecccccccccccc--ceeEEEeccccccccc
Confidence            5899999999999976543 233333  4666778888888664

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=0.00032  Score=56.80  Aligned_cols=170  Identities=15%  Similarity=0.162  Sum_probs=85.8

Q ss_pred             ccccCCEEEEecCCCCCCC----cC--cccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCCChH
Q 027424            2 AHAHGALLLVDNSIMSPVL----SR--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF   75 (223)
Q Consensus         2 a~~~g~~lvVDnT~~s~~~----~~--pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~sp~   75 (223)
                      |+++|+.+++|++++....    ..  -.....+.++.+.+|..+|.   .+|.+.... +........+...+...++.
T Consensus       158 ~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  233 (343)
T d1m6sa_         158 AKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP---VGSVVVGDR-DFIERARKARKMLGGGMRQA  233 (343)
T ss_dssp             HHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS---SCEEEEECH-HHHHHHHHHHHHHTCCCSST
T ss_pred             HHhcCeEEEeccccccccccccccchhhhcccccccccccccccccc---ccccccccH-HHHhhhHhhCcccccccchh
Confidence            6899999999999753211    01  01123455566666655543   345454444 44444444444343333331


Q ss_pred             hHHHHHhcHHH---HHHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC-HHHHHH
Q 027424           76 DCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKH  151 (223)
Q Consensus        76 da~ll~~~l~t---l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~-~~~~~~  151 (223)
                       ..+.......   ...++++..+++..+.+.+...+.. ...+|                ....++.|.+.+ ...+.+
T Consensus       234 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------~~~~~v~~~~~~~~~~a~~  295 (343)
T d1m6sa_         234 -GVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYS-VNPED----------------VKTNMVILRTDNLKVNAHG  295 (343)
T ss_dssp             -HHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCB-CCGGG----------------CCSSEEEEECTTSSSCHHH
T ss_pred             -HHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccC-ccCCC----------------CCceEEEEEeCCCcccHHH
Confidence             2222222222   2344566666777777766665433 12222                123566777632 222334


Q ss_pred             HHhhcCcceeccccCCCCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhc
Q 027424          152 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  220 (223)
Q Consensus       152 f~~~l~l~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~dl~~Al~~  220 (223)
                      |.+.|.-  .|.        +..|                 +.++.|||+++.    ||+|.+++.|++.+++
T Consensus       296 l~~~L~~--~Gi--------~v~~-----------------~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~  341 (343)
T d1m6sa_         296 FIEALRN--SGV--------LANA-----------------VSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK  341 (343)
T ss_dssp             HHHHHHH--HTE--------ECEE-----------------EETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--CCC--------EEec-----------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            4444321  110        0011                 124569999886    6788888888888764

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0006  Score=59.49  Aligned_cols=107  Identities=17%  Similarity=0.035  Sum_probs=65.9

Q ss_pred             CccccCCEEEEecCCCCC-----------C-CcCcc------cCCCcEEEecccccccCCcccceeEEEecChhHHHHHH
Q 027424            1 MAHAHGALLLVDNSIMSP-----------V-LSRPL------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY   62 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~-----------~-~~~pl------~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~   62 (223)
                      +||+||++|++|++....           + ...+.      --.+|++..|.+|.+++.   .||+++.+++.+....+
T Consensus       212 ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~---~gg~i~~~~~~~~~~~~  288 (467)
T d2v1pa1         212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYT  288 (467)
T ss_dssp             HHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHH
T ss_pred             HHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCC---CceeEEecchhhhhHHH
Confidence            589999999999995211           1 11111      124899999999999875   58888887766544332


Q ss_pred             HHHH----hcC----CCCChHhHHHHHhcHHHH--HHHHHHHHhHHHHHHHHHhcCCC
Q 027424           63 FLQN----AEG----SGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPR  110 (223)
Q Consensus        63 ~~~~----~~g----~~~sp~da~ll~~~l~tl--~~R~~~~~~na~~la~~L~~~p~  110 (223)
                      ..+.    ..|    .......+..+...+...  ...+++..+|+..+++.|++...
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  346 (467)
T d2v1pa1         289 ECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGV  346 (467)
T ss_dssp             HHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            2211    111    122333333333333332  45667888999999999998653

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.85  E-value=0.005  Score=51.93  Aligned_cols=52  Identities=17%  Similarity=0.091  Sum_probs=35.2

Q ss_pred             CccccCCEEEEecCCCCCCCcC----cc------cCCCcEEEecccccccCCcccceeEEEe
Q 027424            1 MAHAHGALLLVDNSIMSPVLSR----PL------ELGADIVMHSATKFIAGHSDVMAGVLAV   52 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~~----pl------~~GADivv~S~tK~l~G~~d~~~G~v~~   52 (223)
                      +|+++++++|.|+.+..-..-.    ++      ...--+++.|.+|.++..+..+|+++..
T Consensus       197 la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~  258 (394)
T d2ay1a_         197 ILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLAL  258 (394)
T ss_dssp             HHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEE
T ss_pred             HhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhc
Confidence            4789999999999985432211    11      1112367889999998888888776653

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=96.76  E-value=0.021  Score=47.81  Aligned_cols=48  Identities=17%  Similarity=0.087  Sum_probs=33.3

Q ss_pred             CCEEEEecCCCCCC-CcCcccCCCcEEEecccccccCCcccceeEEEecCh
Q 027424            6 GALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE   55 (223)
Q Consensus         6 g~~lvVDnT~~s~~-~~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~   55 (223)
                      +..++||.+-+.+. ..+.=++|+|+++-|..|.+.|+.-  .|++..+++
T Consensus       152 ~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG--~~~v~~s~~  200 (348)
T d1iuga_         152 EGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPG--LGFVALSPR  200 (348)
T ss_dssp             TCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSC--EEEEEECHH
T ss_pred             cceeechhhhcccccccccccccCCEEEeccccceecCCc--eeeeeechH
Confidence            57889998754322 2344446899999999999988853  255666653

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.53  E-value=0.0018  Score=56.85  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=67.2

Q ss_pred             CccccCCEEEEecCCCCC------CCcCcccCC--CcEEEecccccccCCcccceeEEEecChhHHHHHHHHHHhcCCCC
Q 027424            1 MAHAHGALLLVDNSIMSP------VLSRPLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL   72 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~------~~~~pl~~G--ADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~~~~g~~~   72 (223)
                      +|+++|+++|+|+.....      +.+.-....  +||++  +.|-++|     |+ +.. ...+...- .........-
T Consensus       277 lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~-----g~-~~~-~~~~~~~~-~~~~~~T~~g  346 (461)
T d1ohwa_         277 ISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT-----GG-FFH-KEEFRPNA-PYRIFNTWLG  346 (461)
T ss_dssp             HHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS-----EE-EEE-CGGGSCSS-TTSSCCSCSS
T ss_pred             HHHhhCcceeccccccccccccccccccccccccCchhhh--hhhcccc-----cc-ccc-cccccccc-cccccccccc
Confidence            489999999999996321      111111112  68885  5588874     22 222 22221100 0000111124


Q ss_pred             ChHhHHHHHhcHHHHHHH--HHHHHhHHHHHHHHH----hcCCC-eeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCC
Q 027424           73 APFDCWICLRGVKTMALR--VEKQQDNAQKIAEFL----ASHPR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  145 (223)
Q Consensus        73 sp~da~ll~~~l~tl~~R--~~~~~~na~~la~~L----~~~p~-v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~  145 (223)
                      +|..+...+..|+.+...  +++..+....+.+.|    +++|. |..|+                  |.|.|++|++.+
T Consensus       347 ~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vr------------------G~Gl~~~ie~~~  408 (461)
T d1ohwa_         347 DPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR------------------GRGTFCSFDTPD  408 (461)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE------------------EETTEEEEECSS
T ss_pred             ccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEee------------------eeeEEEEEEcCC
Confidence            677777777777766421  122223333333333    34553 44444                  578899999977


Q ss_pred             HHHHHHHHhhc
Q 027424          146 LALSKHVVETT  156 (223)
Q Consensus       146 ~~~~~~f~~~l  156 (223)
                      .+.+++|+..+
T Consensus       409 ~~~~~~i~~~~  419 (461)
T d1ohwa_         409 ESIRNKLISIA  419 (461)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777776554

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=95.78  E-value=0.034  Score=48.36  Aligned_cols=114  Identities=22%  Similarity=0.256  Sum_probs=65.5

Q ss_pred             CccccCCEEEEecCCCC-CCCcCcccCCCcEEEecccccccCC---cccceeEEEecChhHHH-----------------
Q 027424            1 MAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSATKFIAGH---SDVMAGVLAVKGERLAK-----------------   59 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s-~~~~~pl~~GADivv~S~tK~l~G~---~d~~~G~v~~~~~~~~~-----------------   59 (223)
                      ++|+.|..+++|.-..+ ....+|=++|||||+-+ +|.|+.|   +---+|.+.++.+ +.+                 
T Consensus       220 ~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~-l~r~lPgrivg~s~d~~G~~  297 (437)
T d1wyua1         220 AAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKA-FVRQLPGRLVSETVDVEGRR  297 (437)
T ss_dssp             HHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGG-GGGGCCSCCEEEEEBTTSCE
T ss_pred             HhhhccceEEeeechhhhhccccccccccceEeec-cceeccccCCCcCccccccccch-hhccccccccccccccCCcc
Confidence            36889998887744322 23467889999999999 7765522   1112566666542 211                 


Q ss_pred             --------HHHHHHHhcC--C-CCCh------HhHHHHHhcHHHHHHHHHHHHhHHHHHHHHHhcCCCeeEEEcC
Q 027424           60 --------ELYFLQNAEG--S-GLAP------FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  117 (223)
Q Consensus        60 --------~l~~~~~~~g--~-~~sp------~da~ll~~~l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  117 (223)
                              +-+..++..+  . +.+.      ...|+.+.|=+-|..--++...||.++++.|.+.+.+. +.++
T Consensus       298 ~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~-~~~~  371 (437)
T d1wyua1         298 GFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVR-PFTP  371 (437)
T ss_dssp             EEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCE-ECSC
T ss_pred             cceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCee-ccCC
Confidence                    0011222211  1 1111      12344554444455555778899999999999988874 4444

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0047  Score=52.32  Aligned_cols=52  Identities=12%  Similarity=0.112  Sum_probs=35.6

Q ss_pred             CccccCCEEEEecCCCCCCCc----C-ccc---CCCc--EEEecccccccCCcccceeEEEe
Q 027424            1 MAHAHGALLLVDNSIMSPVLS----R-PLE---LGAD--IVMHSATKFIAGHSDVMAGVLAV   52 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~~----~-pl~---~GAD--ivv~S~tK~l~G~~d~~~G~v~~   52 (223)
                      +|+++++++|.|+.+.--..-    . ++.   ...+  |++.|++|.++-.|..+|+++..
T Consensus       201 ~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~  262 (397)
T d3tata_         201 ILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVM  262 (397)
T ss_dssp             HHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEE
T ss_pred             HHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccc
Confidence            478999999999998543210    0 111   1112  88999999998778888876643

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=95.41  E-value=0.075  Score=41.14  Aligned_cols=87  Identities=7%  Similarity=0.021  Sum_probs=49.6

Q ss_pred             HHHHHHHHhHHHHHHHHHhcCCCeeEEEcCCCCCCcchHHHHhhhCCCCeeEEEEeCCHHHHHHHHhhcCcceeccccCC
Q 027424           88 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  167 (223)
Q Consensus        88 ~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~ggl~sf~~~~~~~~~~f~~~l~l~~~~~s~G~  167 (223)
                      ..+.++...++..+.+.|+..+ + .+..|.                .+.++.+.++ .+.+.++.+.+......++.  
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~~g-~-~~~~p~----------------~~~~v~~~~~-~~~~~~l~~~~~~~~~~~~~--  311 (340)
T d1svva_         253 FELGAHSNKMAAILKAGLEACG-I-RLAWPS----------------ASNQLFPILE-NTMIAELNNDFDMYTVEPLK--  311 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-C-CBSSCC----------------SSSEECBEEE-HHHHHHHTTTEECEEEEEET--
T ss_pred             HHHHHHHHHHHhhhHHHHhcCC-C-eeecCC----------------CceEEEEeCC-HHHHHHHHHhhhhhcccccC--
Confidence            4455667777788888887654 3 344452                2445555563 45566766665443221111  


Q ss_pred             CCCCCCCCccccCCCCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhc
Q 027424          168 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  220 (223)
Q Consensus       168 ~~sli~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlEd~~dL~~dl~~Al~~  220 (223)
                                               -.++.||+|++.-..++=|+.+-+||++
T Consensus       312 -------------------------~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         312 -------------------------DGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             -------------------------TTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             -------------------------CCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence                                     0247899999976555545555555543

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=94.71  E-value=0.03  Score=48.15  Aligned_cols=99  Identities=13%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             CccccCCEEEEecCCCCCCC------cCcccCCCcEEEecccccccCCcccceeEEEecChhHHHHHHHHH-HhcCC--C
Q 027424            1 MAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGS--G   71 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s~~~------~~pl~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~~~~l~~~~-~~~g~--~   71 (223)
                      +|+++|+++|+|+.. +++-      +.-...-.||++.+  |.++| +-.+++ ++++ +++.+.+.... ...+.  .
T Consensus       228 lc~~~~~llI~DEv~-tG~r~g~~~~~~~~gi~PDi~~~g--K~lgg-G~p~~a-~~~~-~~i~~~~~~~~~~~~~~T~~  301 (427)
T d2gsaa_         228 ITLEHDALLVFDEVM-TGFRIAYGGVQEKFGVTPDLTTLG--KIIGG-GLPVGA-YGGK-REIMQLVAPAGPMYQAGTLS  301 (427)
T ss_dssp             HHHHTTCEEEEECTT-TBTTTBTTCHHHHTTCCCSEEEEC--GGGGT-TSCCEE-EEEC-HHHHTTBTTTSSBCCCCTTT
T ss_pred             HHHHhceeeeecccc-ccceecccchHHhcCCCHHHHhhh--hccCC-Ccceee-eeeh-HHHHHHhcccCCCcCCCCCC
Confidence            488999999999997 3321      11112236998764  77776 345544 5454 45544332110 11122  2


Q ss_pred             CChHhHHHHHhcHHHHHH--HHHHHHhHHHHHHHHH
Q 027424           72 LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL  105 (223)
Q Consensus        72 ~sp~da~ll~~~l~tl~~--R~~~~~~na~~la~~L  105 (223)
                      -+|..+...+..|+-+..  -.++..+....+.+.|
T Consensus       302 gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L  337 (427)
T d2gsaa_         302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGL  337 (427)
T ss_dssp             TCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHH
Confidence            367777766666665531  1233444444444433

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=93.60  E-value=0.069  Score=45.68  Aligned_cols=106  Identities=17%  Similarity=0.106  Sum_probs=57.8

Q ss_pred             CccccCCEEEEecCCCC------------CCCcCc------ccCCCcEEEecccccccCCcccceeEEEecChhH-HHHH
Q 027424            1 MAHAHGALLLVDNSIMS------------PVLSRP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKEL   61 (223)
Q Consensus         1 ia~~~g~~lvVDnT~~s------------~~~~~p------l~~GADivv~S~tK~l~G~~d~~~G~v~~~~~~~-~~~l   61 (223)
                      +||+||+++++|++...            ......      +-..+|++.-|.+|..++..   +|+++.++... ....
T Consensus       211 ~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~~~~~~~  287 (465)
T d1ax4a_         211 IAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNEEIFTLA  287 (465)
T ss_dssp             HHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCHHHHHHH
T ss_pred             HHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeEeecchHHHHHhh
Confidence            48999999999998521            011111      01137999999999988763   67777665432 2222


Q ss_pred             HHH-HHhcCCC----CChHhHHHHHhcHHH-H-HHHHHHHHhHHHHHHHHHhcCC
Q 027424           62 YFL-QNAEGSG----LAPFDCWICLRGVKT-M-ALRVEKQQDNAQKIAEFLASHP  109 (223)
Q Consensus        62 ~~~-~~~~g~~----~sp~da~ll~~~l~t-l-~~R~~~~~~na~~la~~L~~~p  109 (223)
                      ... ....+..    +.......+...++. + ..+.++..+++..+.+.|++..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g  342 (465)
T d1ax4a_         288 RQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG  342 (465)
T ss_dssp             HHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            111 1111211    122111111112221 1 3345677788899999998764