Citrus Sinensis ID: 027434

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccEEHHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEvdylsrtpllrlpsfWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVgslnkiplsVAGILLfkvptslensASIFFGLLAGVFFARAKMWERSQSG
Flexible Loop (DISEMBL)
MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG
Low Complexity Region (SEG)
MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG
Disordered region (IsUnstruct)
****LKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW******
Disordered Region (DISOPRED)
MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA**W******
Disordered Region (DISEMBL)
MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG
Disordered Region (DISPRO)
*SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER****
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q941R4	333	GDP-mannose transporter G	yes	no	0.973	0.651	0.880	1e-102
Q84L09	375	GDP-mannose transporter G	no	no	0.955	0.568	0.713	2e-84
Q2AAF6	329	GDP-mannose transporter O	yes	no	0.946	0.641	0.313	9e-26
Q4WTQ6	382	GDP-mannose transporter O	yes	no	0.941	0.549	0.316	3e-25
B0Y384	382	GDP-mannose transporter O	N/A	no	0.941	0.549	0.316	3e-25
A1CZJ3	382	GDP-mannose transporter 1	N/A	no	0.941	0.549	0.312	7e-25
A1C9R4	381	GDP-mannose transporter O	N/A	no	0.941	0.551	0.312	1e-24
Q6C0U0	326	GDP-mannose transporter O	yes	no	0.937	0.641	0.291	5e-24
Q753T9	329	GDP-mannose transporter O	yes	no	0.941	0.638	0.303	6e-24
Q9UTK8	345	GDP-mannose transporter O	yes	no	0.946	0.611	0.310	9e-24

>sp|Q941R4|GONS1_ARATH GDP-mannose transporter GONST1 OS=Arabidopsis thaliana GN=GONST1 PE=1 SV=2

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/217 (88%), Positives = 206/217 (94%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVTVLKNVTNVITAVGEMYLFNK+HDNRVWAALFLMIISA+SGGITDLSF+A
Sbjct: 117 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNA 176

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
           VGYAWQI NCFLTASYSLTLR+ MDTAKQVT+SGNLNEFSMVLLNN+LSLPLG+LL   F
Sbjct: 177 VGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFF 236

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
           NE+DYL +TPLLRLPSFW+VMTLSG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 237 NEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 296

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 220
           AGI+LF VPTSL+NSASI FGL+AGV FARAKM E+S
Sbjct: 297 AGIVLFNVPTSLQNSASILFGLVAGVVFARAKMREKS 333

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen. Required for the luminal synthesis of a variety of plant cell surface components.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84L09|GONS2_ARATH GDP-mannose transporter GONST2 OS=Arabidopsis thaliana GN=GONST2 PE=2 SV=1

 Score =  311 bits (798), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/213 (71%), Positives = 179/213 (84%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVT+LKN TN++T +GE+Y+F KR +N+VWAA+F+MIISAISGGITDL+F A
Sbjct: 162 SLKYINVAMVTILKNATNILTGIGEVYMFRKRQNNKVWAAMFMMIISAISGGITDLTFDA 221

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
           VGY WQ+ NCFLTASYSLTLRRVMD AKQ TKSG+LNE SMVLLNN LS+P G++L+I+ 
Sbjct: 222 VGYTWQLANCFLTASYSLTLRRVMDKAKQSTKSGSLNEVSMVLLNNLLSIPFGIILIILL 281

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
            E  Y+  T + +   FW+V T SGFLGLAISFTSMWFLHQTG TTYSLVGSLNK+P+S+
Sbjct: 282 GEWRYVISTDVTKDSMFWVVATASGFLGLAISFTSMWFLHQTGPTTYSLVGSLNKVPISL 341

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216
           AG++LF VP SL N  SI FGL AGV FARAKM
Sbjct: 342 AGLVLFNVPLSLPNLFSILFGLFAGVVFARAKM 374

GDP-mannose transporter that may be involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2AAF6|GMT_PICPA GDP-mannose transporter OS=Komagataella pastoris GN=VIG4 PE=3 SV=1

 Score =  116 bits (291), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 22/233 (9%)

Query: 2   SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD--- 58
           S +L+Y+++ + T+ KN+T ++ A GE+  F  R  N    +  LM++S+      D   
Sbjct: 98  SKALQYLSIPIYTIFKNLTIILIAYGEVIWFGGRVTNLALGSFVLMVLSSAVASYGDSNV 157

Query: 59  ----LSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLP 114
               L+F+ +GY W   NCF +A++ L +R+ +       K  N  +F  +  NN LS+P
Sbjct: 158 DTGKLNFN-IGYFWMFTNCFSSAAFVLFMRKRI-------KLTNFKDFDTMYYNNLLSIP 209

Query: 115 LGVLLVIVFNEVDYLSRTPLLRLPS---FWLV--MTLSGFLGLAISFTSMWFLHQTGATT 169
             +LL       D+ ++      P    + ++  M +SG   + IS+TS W +  T +TT
Sbjct: 210 --ILLFASLTTEDWSAKNIAQNFPEDTKYAVIASMIISGMSAVGISYTSAWCVRVTSSTT 267

Query: 170 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 222
           YS+VG+LNK+P++++G+L FK P +  + +SIF G  AG+ +A AK  ++ + 
Sbjct: 268 YSMVGALNKLPIALSGLLFFKAPINFYSISSIFIGFAAGLVYAIAKQKQKKED 320

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Pichia pastoris (taxid: 4922)

>sp|Q4WTQ6|GMT_ASPFU GDP-mannose transporter OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=gmt1 PE=3 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 30/240 (12%)

Query: 2   SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 61
           S +L+Y+++ + T+ KN+T ++ A GE+  F          +  LM++S+I     D+  
Sbjct: 127 SKALQYLSIPVYTIFKNLTIILIAYGEVLWFGGSVTGLTLFSFGLMVLSSIIAAWADIK- 185

Query: 62  HAV---------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVL 106
           HAV               GY W +INC  T+SY L +R+ +       K  N  +F  + 
Sbjct: 186 HAVESSGDATAKVSTLNAGYIWMLINCLCTSSYVLGMRKRI-------KLTNFKDFDTMF 238

Query: 107 LNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWF 161
            NN LS+P  VLLV+ F   D+ S       PS         M LSG   + IS+TS W 
Sbjct: 239 YNNLLSIP--VLLVLTFLMEDWSSANIARNFPSTDRNGILFAMILSGLSSVFISYTSAWC 296

Query: 162 LHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
           +  T +TTYS+VG+LNK+P++++G++ F  P +  + ++I  G ++G+ +A AK+ + ++
Sbjct: 297 VRVTSSTTYSMVGALNKLPIALSGLIFFDAPVTFPSVSAIVVGFISGIVYAVAKIKQSAK 356

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|B0Y384|GMT_ASPFC GDP-mannose transporter OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=gmt1 PE=3 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 30/240 (12%)

Query: 2   SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 61
           S +L+Y+++ + T+ KN+T ++ A GE+  F          +  LM++S+I     D+  
Sbjct: 127 SKALQYLSIPVYTIFKNLTIILIAYGEVLWFGGSVTGLTLFSFGLMVLSSIIAAWADIK- 185

Query: 62  HAV---------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVL 106
           HAV               GY W +INC  T+SY L +R+ +       K  N  +F  + 
Sbjct: 186 HAVESSGDATAKVSTLNAGYIWMLINCLCTSSYVLGMRKRI-------KLTNFKDFDTMF 238

Query: 107 LNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWF 161
            NN LS+P  VLLV+ F   D+ S       PS         M LSG   + IS+TS W 
Sbjct: 239 YNNLLSIP--VLLVLTFLMEDWSSANIARNFPSTDRNGILFAMILSGLSSVFISYTSAWC 296

Query: 162 LHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
           +  T +TTYS+VG+LNK+P++++G++ F  P +  + ++I  G ++G+ +A AK+ + ++
Sbjct: 297 VRVTSSTTYSMVGALNKLPIALSGLIFFDAPVTFPSVSAIVVGFISGIVYAVAKIKQSAK 356

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) (taxid: 451804)

>sp|A1CZJ3|GMT1_NEOFI GDP-mannose transporter 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=gmt1 PE=3 SV=1

 Score =  114 bits (284), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 30/240 (12%)

Query: 2   SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 61
           S +L+Y+++ + T+ KN+T ++ A GE+  F          +  LM++S+I     D+  
Sbjct: 127 SKALQYLSIPVYTIFKNLTIILIAYGEVLWFGGSVTGMTLFSFGLMVLSSIIAAWADIK- 185

Query: 62  HAV---------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVL 106
           HAV               GY W +INC  T+SY L +R+ +       K  N  +F  + 
Sbjct: 186 HAVESSGDATAKVSTLNAGYIWMLINCLCTSSYVLGMRKRI-------KLTNFKDFDTMF 238

Query: 107 LNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWF 161
            NN LS+P  VLLV+ F   D+ S       P          M LSG   + IS+TS W 
Sbjct: 239 YNNLLSIP--VLLVLTFLMEDWSSANIARNFPPADRNGILFAMILSGLSSVFISYTSAWC 296

Query: 162 LHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
           +  T +TTYS+VG+LNK+P++++G++ F  P +  + ++I  G ++G+ +A AK+ + ++
Sbjct: 297 VRVTSSTTYSMVGALNKLPIALSGLIFFDAPVTFPSVSAIVVGFISGIVYAVAKIKQSAK 356

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|A1C9R4|GMT_ASPCL GDP-mannose transporter OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=gmt1 PE=3 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 30/240 (12%)

Query: 2   SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 61
           S +L+++++ + T+ KN+T ++ A GE+  F          +  LM++S+I     D+  
Sbjct: 127 SKALQFLSIPVYTIFKNLTIILIAYGEVLWFGGSVTGLTLFSFGLMVLSSIIAAWADIK- 185

Query: 62  HAV---------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVL 106
           HAV               GY W +INC  T+SY L +R+ +       K  N  +F  + 
Sbjct: 186 HAVESSGDATAKVSTLNAGYIWMLINCLCTSSYVLGMRKRI-------KLTNFKDFDTMF 238

Query: 107 LNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWF 161
            NN LS+P  VLLV+ F   D+ S       P          M LSG   + IS+TS W 
Sbjct: 239 YNNLLSIP--VLLVLTFLMEDWSSANITRNFPPADRNGIMFAMILSGLSSVFISYTSAWC 296

Query: 162 LHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
           +  T +TTYS+VG+LNK+P++V+G++ F  P +  + ++I  G ++G+ +A AK+ + ++
Sbjct: 297 VRVTSSTTYSMVGALNKLPIAVSGLIFFDAPVTFPSVSAIVVGFVSGIVYAVAKIKQNAK 356

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

>sp|Q6C0U0|GMT_YARLI GDP-mannose transporter OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=VRG4 PE=3 SV=1

 Score =  110 bits (276), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 130/237 (54%), Gaps = 28/237 (11%)

Query: 2   SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISA-------ISG 54
           S +L+++++ + T+ KN+T ++ A GE+  F     +   A+  LM++S+       ISG
Sbjct: 91  SKALQFLSIPVYTIFKNLTIILIAYGEVLWFGGSVTSMALASFVLMVLSSVIAAWSDISG 150

Query: 55  GI-------TDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLL 107
            I       T ++   +GY W + NCF +A++ L +R+ +       K  N  +F     
Sbjct: 151 AIAVSGSATTTVTALNIGYFWMMSNCFASAAFVLYMRKRI-------KLTNFGDFDTTFY 203

Query: 108 NNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWFL 162
           NN LS+P+ ++  ++F   D+      +  P       +  M +SG + + IS+ S W +
Sbjct: 204 NNLLSIPVLLIASLLFE--DWSPANLAVNFPPESRNLIFFSMVVSGLMSIGISYCSAWCV 261

Query: 163 HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 219
             T +TTYS+VG+LNK+PL+++GI+ F  P +  + ++IF G +AG+ +A A++ ++
Sbjct: 262 RVTSSTTYSMVGALNKLPLALSGIVFFGTPATFSSVSAIFVGFVAGIVYAVAQIQKK 318

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q753T9|GMT_ASHGO GDP-mannose transporter OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=VRG4 PE=3 SV=2

 Score =  110 bits (276), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 27/237 (11%)

Query: 2   SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 61
           S +LKY+ V + T+ KN+T ++ A GE+  F  R      ++  L+++S++   + D   
Sbjct: 100 SRALKYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTAMELSSFLLIVLSSVVATLGDQQA 159

Query: 62  HA---------------VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVL 106
            A               VGY W   NC  +A + L +R+ +   K         +F  + 
Sbjct: 160 LAKKPLAAAVESILGLNVGYFWMFTNCICSALFVLIMRKRIALTK-------FKDFDTMF 212

Query: 107 LNNSLSLPLGVLLVIVFNE--VDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQ 164
            NN LSLPL +L   +F +     ++R        + ++M +SG   + IS+ S W +  
Sbjct: 213 YNNILSLPLLMLASFMFEDWGAANIARN---LTKDYIIIMIISGLASVGISYCSGWCVRV 269

Query: 165 TGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
           T +TTYS+VG+LNK+P++++G+L F  P +  +  SIF G L+G+ +A AK  ++SQ
Sbjct: 270 TSSTTYSMVGALNKLPIALSGLLFFDAPKNFLSIFSIFLGFLSGIVYAVAKQKKQSQ 326

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q9UTK8|GMT_SCHPO GDP-mannose transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vrg4 PE=3 SV=1

 Score =  110 bits (275), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 21/232 (9%)

Query: 2   SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-- 59
           S +L++++V + T+ KN+T +I A GE+  F          +  LM++S+I     D+  
Sbjct: 95  SKALQFLSVPVYTIFKNLTIIIIAYGEVLWFGGHVTALTLFSFGLMVLSSIVAAWADIQS 154

Query: 60  -SFHAV----GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLP 114
            SF +     GY W ++NC   A++ L +R+ +       K  N  +F  +  NN LS+P
Sbjct: 155 SSFASQTLNSGYLWMVLNCLTNAAFVLAMRKRI-------KLTNFRDFDTMFYNNLLSIP 207

Query: 115 LGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWFLHQTGATT 169
           + V+  + F E D+ +       P        + M +SG   + IS+TS W +  T +TT
Sbjct: 208 VLVICTL-FTE-DWSAENIAQNFPPDAKFGVLMAMAISGVSSVGISYTSAWCVRVTSSTT 265

Query: 170 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
           YS+VG+LNK+PL++AG++ F  P +  +  +I  G ++GV +A AK  ++ Q
Sbjct: 266 YSMVGALNKLPLAIAGLVFFDAPITFGSVTAILLGFISGVVYAVAKSQQQRQ 317

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
296088545	648	unnamed protein product [Vitis vinifera]	0.982	0.337	0.922	1e-113
224080961	336	predicted protein [Populus trichocarpa]	0.973	0.645	0.917	1e-110
449513327	336	PREDICTED: GDP-mannose transporter GONST	0.973	0.645	0.907	1e-110
224093398	300	predicted protein [Populus trichocarpa]	0.955	0.71	0.915	1e-108
449459266	543	PREDICTED: GDP-mannose transporter GONST	0.982	0.403	0.894	1e-108
356507466	340	PREDICTED: GDP-mannose transporter GONST	0.982	0.644	0.885	1e-107
357464677	342	GDP-mannose transporter [Medicago trunca	0.982	0.640	0.890	1e-101
297836010	332	GONST1 [Arabidopsis lyrata subsp. lyrata	0.973	0.653	0.880	1e-101
18397301	333	GDP-mannose transporter [Arabidopsis tha	0.973	0.651	0.880	1e-100
15487237	333	GDP-Mannose transporter [Arabidopsis tha	0.973	0.651	0.880	1e-100

>gi|296088545|emb|CBI37536.3| unnamed protein product [Vitis vinifera]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/219 (92%), Positives = 212/219 (96%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVTVLKNVTNVITAVGEMYLFNK HDNRVWAALFLMIISAISGGITDLSF+ 
Sbjct: 430 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKHHDNRVWAALFLMIISAISGGITDLSFNG 489

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
           +GY WQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNN+LSLPLGV+L+ VF
Sbjct: 490 IGYTWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNTLSLPLGVILMFVF 549

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
           NEVDYLS TPLLRLP+FWLVMTLSGFLGLAISF+SMWFLHQTGATTYSLVGSLNKIPLSV
Sbjct: 550 NEVDYLSTTPLLRLPTFWLVMTLSGFLGLAISFSSMWFLHQTGATTYSLVGSLNKIPLSV 609

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 222
           AGI+LF VPTSLENSASIFFGL+AGVFFA+AKM ERSQS
Sbjct: 610 AGIVLFHVPTSLENSASIFFGLVAGVFFAKAKMRERSQS 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080961|ref|XP_002306245.1| predicted protein [Populus trichocarpa] gi|222855694|gb|EEE93241.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/217 (91%), Positives = 210/217 (96%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVTVLKNVTNVITA+GEMYLF K HD+RVWAALFLMIISAISGGITDLSFHA
Sbjct: 120 SLKYINVAMVTVLKNVTNVITALGEMYLFQKDHDSRVWAALFLMIISAISGGITDLSFHA 179

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
           VGYAWQI+NCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMV+LNN+LSLPLG++L+ VF
Sbjct: 180 VGYAWQILNCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVMLNNTLSLPLGLILIFVF 239

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
           NEVDYLSRTPLLRLP+FWLV+TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV
Sbjct: 240 NEVDYLSRTPLLRLPTFWLVVTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 299

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 220
           AGILLF VPTSL+NSASI FGLLAGV FARAKM ERS
Sbjct: 300 AGILLFHVPTSLQNSASILFGLLAGVIFARAKMRERS 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449513327|ref|XP_004164296.1| PREDICTED: GDP-mannose transporter GONST1-like [Cucumis sativus]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/217 (90%), Positives = 207/217 (95%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVTVLKNVTNVITAVGEMYLF K HDNRVWAALFLMIISAI+GG+TDLSFHA
Sbjct: 120 SLKYINVAMVTVLKNVTNVITAVGEMYLFGKHHDNRVWAALFLMIISAITGGLTDLSFHA 179

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
           VGYAWQIINCFLTASYSLTLRRVMDTAKQ+TKSGNLNEFSMVLLNN+LSLPLG+ LV VF
Sbjct: 180 VGYAWQIINCFLTASYSLTLRRVMDTAKQLTKSGNLNEFSMVLLNNTLSLPLGIFLVFVF 239

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
           NE+DYLSRTPLLRLP FWLV+T SG LGL ISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 240 NEIDYLSRTPLLRLPMFWLVITFSGVLGLGISFTSMWFLHQTGATTYSLVGSLNKIPLSI 299

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 220
           AGI LFKVPTS+ENSASIFFGLLAGVFFARAK+ ERS
Sbjct: 300 AGIFLFKVPTSVENSASIFFGLLAGVFFARAKIRERS 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093398|ref|XP_002309911.1| predicted protein [Populus trichocarpa] gi|222852814|gb|EEE90361.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/213 (91%), Positives = 205/213 (96%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVT+LKNVTNVITAVGEMYLF K HD+RVWAALFLMIISAISGGITDLSFHA
Sbjct: 88  SLKYINVAMVTILKNVTNVITAVGEMYLFQKDHDSRVWAALFLMIISAISGGITDLSFHA 147

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
           VGYAWQIINCFLTASYSLTLRRVMDTAK VTKSGNLNEFSMV+LNN+LSLPLG++L+ VF
Sbjct: 148 VGYAWQIINCFLTASYSLTLRRVMDTAKHVTKSGNLNEFSMVMLNNTLSLPLGLILIFVF 207

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
           NEVDYLSRTPLLRLP+FW V+TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV
Sbjct: 208 NEVDYLSRTPLLRLPTFWFVVTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 267

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216
           AGI LF VPTSL+NSASI FGLLAGVFFARAKM
Sbjct: 268 AGIFLFHVPTSLQNSASILFGLLAGVFFARAKM 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459266|ref|XP_004147367.1| PREDICTED: GDP-mannose transporter GONST1-like [Cucumis sativus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/219 (89%), Positives = 206/219 (94%)

Query: 3   LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFH 62
            SLKYINVAMVTVLKNVTNVITAVGEMYLF K HDNRVWAALFLMIISAI+GG+TDLSFH
Sbjct: 119 FSLKYINVAMVTVLKNVTNVITAVGEMYLFGKHHDNRVWAALFLMIISAITGGLTDLSFH 178

Query: 63  AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIV 122
           AVGYAWQIINCFLTASYSLTLRRVMDTAKQ+TKSGNLNEFSMVLLNN+LSLPLG+ LV V
Sbjct: 179 AVGYAWQIINCFLTASYSLTLRRVMDTAKQLTKSGNLNEFSMVLLNNTLSLPLGIFLVFV 238

Query: 123 FNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS 182
           FNE+DYLSRTPLLRLP FWLV+T SG LGL ISFTSMWFLHQTGATTYSLVGSLNKIPLS
Sbjct: 239 FNEIDYLSRTPLLRLPMFWLVITFSGVLGLGISFTSMWFLHQTGATTYSLVGSLNKIPLS 298

Query: 183 VAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
           +AGI LFKVPTS+ENSASIFFGLLAGVFFARAK+ ER  
Sbjct: 299 IAGIFLFKVPTSVENSASIFFGLLAGVFFARAKIRERKN 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507466|ref|XP_003522487.1| PREDICTED: GDP-mannose transporter GONST1-like [Glycine max]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/219 (88%), Positives = 208/219 (94%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVTVLKNVTNVITA+GEMYLF K HD +VWA+LFLMIISAI+GGITDLSF+A
Sbjct: 122 SLKYINVAMVTVLKNVTNVITALGEMYLFKKHHDGKVWASLFLMIISAITGGITDLSFNA 181

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
           VGYAWQ +NCFLTASYSL L+RVMDTAKQVTKSGNLNEFSMVLLNN+LS+PLG+ L+IVF
Sbjct: 182 VGYAWQTLNCFLTASYSLMLQRVMDTAKQVTKSGNLNEFSMVLLNNTLSVPLGIFLIIVF 241

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
           NE+DYL  TPLLRLPSFWLVMT SGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 242 NEMDYLLSTPLLRLPSFWLVMTFSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 301

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 222
           AGILLFKVPTSLENSASI FGLLAGVFFARAK+ ERSQS
Sbjct: 302 AGILLFKVPTSLENSASILFGLLAGVFFARAKIRERSQS 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464677|ref|XP_003602620.1| GDP-mannose transporter [Medicago truncatula] gi|355491668|gb|AES72871.1| GDP-mannose transporter [Medicago truncatula]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/219 (89%), Positives = 206/219 (94%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVTVLKNVTNVITAVGEMYLF+K H+ RVWAALFLMIISAI+GGITDLSF+A
Sbjct: 124 SLKYINVAMVTVLKNVTNVITAVGEMYLFSKHHEGRVWAALFLMIISAITGGITDLSFNA 183

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
            GY WQ +NCFLTASYSLTLRRVMDTAKQ TKSGNLNEF+MVLLNN+LSLPLG+ L++VF
Sbjct: 184 TGYVWQTLNCFLTASYSLTLRRVMDTAKQYTKSGNLNEFTMVLLNNTLSLPLGIFLMLVF 243

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
           NEVDYL RTPLLRLPSFWLVMT SG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV
Sbjct: 244 NEVDYLLRTPLLRLPSFWLVMTFSGVLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 303

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 222
           AGILLFKVPTSLENSASI FGLLAGV FARAK+ ERSQS
Sbjct: 304 AGILLFKVPTSLENSASILFGLLAGVLFARAKIRERSQS 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836010|ref|XP_002885887.1| GONST1 [Arabidopsis lyrata subsp. lyrata] gi|297331727|gb|EFH62146.1| GONST1 [Arabidopsis lyrata subsp. lyrata]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/217 (88%), Positives = 206/217 (94%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVTVLKNVTNVITAVGEMYLFNK+HDNRVWAALFLMIISA+SGGITDLSF+A
Sbjct: 116 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNA 175

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
           VGYAWQI NCFLTASYSLTLR+ MDTAKQVT+SGNLNEFSMVLLNN+LSLPLG+LL   F
Sbjct: 176 VGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSFSF 235

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
           NE+DYL +TPLLRLPSFW+VMTLSG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 236 NEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 295

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 220
           AGI+LF VPTSL+NSASI FGL+AGV FARAKM E+S
Sbjct: 296 AGIVLFNVPTSLQNSASILFGLVAGVVFARAKMREKS 332

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397301|ref|NP_565357.1| GDP-mannose transporter [Arabidopsis thaliana] gi|334184214|ref|NP_001189524.1| GDP-mannose transporter [Arabidopsis thaliana] gi|26006780|sp|Q941R4.2|GONS1_ARATH RecName: Full=GDP-mannose transporter GONST1; AltName: Full=Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1 gi|20198047|gb|AAD22687.2| putative vanadate resistance protein [Arabidopsis thaliana] gi|330251156|gb|AEC06250.1| GDP-mannose transporter [Arabidopsis thaliana] gi|330251158|gb|AEC06252.1| GDP-mannose transporter [Arabidopsis thaliana]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/217 (88%), Positives = 206/217 (94%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVTVLKNVTNVITAVGEMYLFNK+HDNRVWAALFLMIISA+SGGITDLSF+A
Sbjct: 117 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNA 176

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
           VGYAWQI NCFLTASYSLTLR+ MDTAKQVT+SGNLNEFSMVLLNN+LSLPLG+LL   F
Sbjct: 177 VGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFF 236

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
           NE+DYL +TPLLRLPSFW+VMTLSG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 237 NEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 296

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 220
           AGI+LF VPTSL+NSASI FGL+AGV FARAKM E+S
Sbjct: 297 AGIVLFNVPTSLQNSASILFGLVAGVVFARAKMREKS 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15487237|emb|CAC69066.1| GDP-Mannose transporter [Arabidopsis thaliana]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/217 (88%), Positives = 206/217 (94%)

Query: 4   SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
           SLKYINVAMVTVLKNVTNVITAVGEMYLFNK+HDNRVWAALFLMIISA+SGGITDLSF+A
Sbjct: 117 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNA 176

Query: 64  VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
           VGYAWQI NCFLTASYSLTLR+ MDTAKQVT+SGNLNEFSMVLLNN+LSLPLG+LL   F
Sbjct: 177 VGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFF 236

Query: 124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
           NE+DYL +TPLLRLPSFW+VMTLSG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct: 237 NEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 296

Query: 184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 220
           AGI+LF VPTSL+NSASI FGL+AGV FARAKM E+S
Sbjct: 297 AGIVLFNVPTSLQNSASILFGLVAGVVFARAKMREKS 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2054090	333	GONST1 "AT2G13650" [Arabidopsi	0.973	0.651	0.880	4.5e-98
TAIR|locus:2025047	375	GONST2 "AT1G07290" [Arabidopsi	0.955	0.568	0.713	3.3e-79
POMBASE|SPAC144.18	345	vrg4 "Golgi GDP-mannose transp	0.946	0.611	0.318	3.2e-26
CGD|CAL0002875	371	VRG4 [Candida albicans (taxid:	0.946	0.568	0.307	3.6e-25
UNIPROTKB|Q5A477	371	VRG4 "GDP-mannose transporter"	0.946	0.568	0.307	3.6e-25
ASPGD|ASPL0000072017	379	gmtA [Emericella nidulans (tax	0.941	0.554	0.304	1.6e-24
SGD|S000000841	249	HVG1 "Protein of unknown funct	0.919	0.823	0.303	2.3e-23
SGD|S000003193	337	VRG4 "Golgi GDP-mannose transp	0.919	0.608	0.300	4.3e-22
DICTYBASE|DDB_G0278631	382	DDB_G0278631 "DUF250 family pr	0.914	0.534	0.271	4e-21
DICTYBASE|DDB_G0277007	368	DDB_G0277007 "GDP-fucose trans	0.905	0.548	0.219	3e-14

TAIR|locus:2054090 GONST1 "AT2G13650" [Arabidopsis thaliana (taxid:3702)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 191/217 (88%), Positives = 206/217 (94%)

Query:     4 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
             SLKYINVAMVTVLKNVTNVITAVGEMYLFNK+HDNRVWAALFLMIISA+SGGITDLSF+A
Sbjct:   117 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNA 176

Query:    64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
             VGYAWQI NCFLTASYSLTLR+ MDTAKQVT+SGNLNEFSMVLLNN+LSLPLG+LL   F
Sbjct:   177 VGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFF 236

Query:   124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
             NE+DYL +TPLLRLPSFW+VMTLSG LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS+
Sbjct:   237 NEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSI 296

Query:   184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 220
             AGI+LF VPTSL+NSASI FGL+AGV FARAKM E+S
Sbjct:   297 AGIVLFNVPTSLQNSASILFGLVAGVVFARAKMREKS 333

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0055085 "transmembrane transport" evidence=ISS

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IDA

GO:0015784 "GDP-mannose transport" evidence=IGI;IDA;IMP

TAIR|locus:2025047 GONST2 "AT1G07290" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 152/213 (71%), Positives = 179/213 (84%)

Query:     4 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
             SLKYINVAMVT+LKN TN++T +GE+Y+F KR +N+VWAA+F+MIISAISGGITDL+F A
Sbjct:   162 SLKYINVAMVTILKNATNILTGIGEVYMFRKRQNNKVWAAMFMMIISAISGGITDLTFDA 221

Query:    64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
             VGY WQ+ NCFLTASYSLTLRRVMD AKQ TKSG+LNE SMVLLNN LS+P G++L+I+ 
Sbjct:   222 VGYTWQLANCFLTASYSLTLRRVMDKAKQSTKSGSLNEVSMVLLNNLLSIPFGIILIILL 281

Query:   124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
              E  Y+  T + +   FW+V T SGFLGLAISFTSMWFLHQTG TTYSLVGSLNK+P+S+
Sbjct:   282 GEWRYVISTDVTKDSMFWVVATASGFLGLAISFTSMWFLHQTGPTTYSLVGSLNKVPISL 341

Query:   184 AGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216
             AG++LF VP SL N  SI FGL AGV FARAKM
Sbjct:   342 AGLVLFNVPLSLPNLFSILFGLFAGVVFARAKM 374

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0055085 "transmembrane transport" evidence=ISS

GO:0015780 "nucleotide-sugar transport" evidence=IGI

GO:0015784 "GDP-mannose transport" evidence=IGI

POMBASE|SPAC144.18 vrg4 "Golgi GDP-mannose transporter Vrg4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 74/232 (31%), Positives = 127/232 (54%)

Query:     2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-- 59
             S +L++++V + T+ KN+T +I A GE+  F          +  LM++S+I     D+  
Sbjct:    95 SKALQFLSVPVYTIFKNLTIIIIAYGEVLWFGGHVTALTLFSFGLMVLSSIVAAWADIQS 154

Query:    60 -SFHAV----GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLP 114
              SF +     GY W ++NC   A++ L +R      K++ K  N  +F  +  NN LS+P
Sbjct:   155 SSFASQTLNSGYLWMVLNCLTNAAFVLAMR------KRI-KLTNFRDFDTMFYNNLLSIP 207

Query:   115 LGVLLVIVFNEVDYLSRTPLLRLP---SFWLVMTL--SGFLGLAISFTSMWFLHQTGATT 169
             + V+  + F E D+ +       P    F ++M +  SG   + IS+TS W +  T +TT
Sbjct:   208 VLVICTL-FTE-DWSAENIAQNFPPDAKFGVLMAMAISGVSSVGISYTSAWCVRVTSSTT 265

Query:   170 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
             YS+VG+LNK+PL++AG++ F  P +  +  +I  G ++GV +A AK  ++ Q
Sbjct:   266 YSMVGALNKLPLAIAGLVFFDAPITFGSVTAILLGFISGVVYAVAKSQQQRQ 317

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

CGD|CAL0002875 VRG4 [Candida albicans (taxid:5476)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 72/234 (30%), Positives = 128/234 (54%)

Query:     2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD--- 58
             S +L+Y+++ + T+ KN+T ++ A GE+  F  +      ++  LM++S++     D   
Sbjct:   138 SKALQYLSIPVYTIFKNLTIILIAYGEVIWFGGKVTTMALSSFLLMVLSSVIAYYGDNAA 197

Query:    59 LSFHA------VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLS 112
             +  H       +GY W + NCF +A++ L +R      K++ K  N  +F  +  NN LS
Sbjct:   198 VKSHDDAFALYLGYFWMLTNCFASAAFVLIMR------KRI-KLTNFKDFDTMYYNNLLS 250

Query:   113 LPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT-----LSGFLGLAISFTSMWFLHQTGA 167
             +P  +LL+  F   D+ S    L  P+   V T     LSG   + IS+ S W +  T +
Sbjct:   251 IP--ILLICSFIFEDWSSANVSLNFPADNRVTTITAMILSGASSVGISYCSAWCVRVTSS 308

Query:   168 TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
             TTYS+VG+LNK+P++++G++ F+   +  + +SIF G  AG+ +A AK  ++ +
Sbjct:   309 TTYSMVGALNKLPIALSGLIFFEAAVNFWSVSSIFVGFGAGLVYAVAKQKQQKE 362

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0015784 "GDP-mannose transport" evidence=IGI

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IGI

GO:0030448 "hyphal growth" evidence=IMP

GO:0006486 "protein glycosylation" evidence=IMP

GO:0005739 "mitochondrion" evidence=IEA

GO:0006487 "protein N-linked glycosylation" evidence=IEA

UNIPROTKB|Q5A477 VRG4 "GDP-mannose transporter" [Candida albicans SC5314 (taxid:237561)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 72/234 (30%), Positives = 128/234 (54%)

Query:     2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD--- 58
             S +L+Y+++ + T+ KN+T ++ A GE+  F  +      ++  LM++S++     D   
Sbjct:   138 SKALQYLSIPVYTIFKNLTIILIAYGEVIWFGGKVTTMALSSFLLMVLSSVIAYYGDNAA 197

Query:    59 LSFHA------VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLS 112
             +  H       +GY W + NCF +A++ L +R      K++ K  N  +F  +  NN LS
Sbjct:   198 VKSHDDAFALYLGYFWMLTNCFASAAFVLIMR------KRI-KLTNFKDFDTMYYNNLLS 250

Query:   113 LPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT-----LSGFLGLAISFTSMWFLHQTGA 167
             +P  +LL+  F   D+ S    L  P+   V T     LSG   + IS+ S W +  T +
Sbjct:   251 IP--ILLICSFIFEDWSSANVSLNFPADNRVTTITAMILSGASSVGISYCSAWCVRVTSS 308

Query:   168 TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
             TTYS+VG+LNK+P++++G++ F+   +  + +SIF G  AG+ +A AK  ++ +
Sbjct:   309 TTYSMVGALNKLPIALSGLIFFEAAVNFWSVSSIFVGFGAGLVYAVAKQKQQKE 362

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IGI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006486 "protein glycosylation" evidence=IMP

GO:0015784 "GDP-mannose transport" evidence=IGI

GO:0030448 "hyphal growth" evidence=IMP

ASPGD|ASPL0000072017 gmtA [Emericella nidulans (taxid:162425)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 73/240 (30%), Positives = 125/240 (52%)

Query:     2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 61
             S +L+++++ + T+ KN+T ++ A GE+  F     N    +  LM+ S+I     D+  
Sbjct:   125 SKALQFLSIPVYTIFKNLTIILIAYGEVLWFGGSVTNLTLFSFGLMVFSSIIAAWADIK- 183

Query:    62 HAV---------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVL 106
             HA+               GY W +INC  T+SY L +R      K++ K  N  +F  + 
Sbjct:   184 HAIESSGDATSKVSTLNAGYIWMLINCLCTSSYVLGMR------KRI-KLTNFKDFDTMF 236

Query:   107 LNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-----FWLVMTLSGFLGLAISFTSMWF 161
              NN LS+P  VL+V      D+         PS         M LSG   + IS+TS W 
Sbjct:   237 YNNLLSIP--VLIVCSGILEDWSPANVARNFPSADRNGIMFAMILSGLSTVFISYTSAWC 294

Query:   162 LHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
             +  T +TTYS+VG+LNK+P++++G++ F  P +  + ++I  G ++G+ +A AK+ + ++
Sbjct:   295 VRVTSSTTYSMVGALNKLPIALSGLIFFDAPVTFPSVSAIMVGFVSGIVYAVAKIKQNAK 354

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015784 "GDP-mannose transport" evidence=IEA

GO:0051278 "fungal-type cell wall polysaccharide biosynthetic process" evidence=IEA

SGD|S000000841 HVG1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 72/237 (30%), Positives = 125/237 (52%)

Query:     2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAI--------- 52
             S SL+Y+ V + T+ KN+T ++ A GE+  F  +  +    +  +M++S++         
Sbjct:     6 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGKVTSMELTSFIMMVLSSVVATWGDQQA 65

Query:    53 ----SGGITDLSFHAV---------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNL 99
                 +  + DL    V         GY W   NC  +A + L +R+ +    ++T   N 
Sbjct:    66 IAIKASSLEDLDQELVESTIFVLNPGYLWMFTNCISSALFVLIMRKRI----RLT---NF 118

Query:   100 NEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV-MTLSGFLGLAISFTS 158
              ++  +  NN L+LPL  LLV  F   D+ ++   + L +  L  M +SG + + IS+ S
Sbjct:   119 KDYDTMFYNNVLALPL--LLVFSFIMEDWSTKNLSVNLSADSLAAMVISGLMSVGISYCS 176

Query:   159 MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 215
              W +  T +TTYS+VG+LNK+P+++AG++ F  P +  +  SIF G L+G+ +A AK
Sbjct:   177 GWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPKNFLSFFSIFLGFLSGLLYAVAK 233

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015780 "nucleotide-sugar transport" evidence=IEA

SGD|S000003193 VRG4 "Golgi GDP-mannose transporter" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 70/233 (30%), Positives = 121/233 (51%)

Query:     2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAI--------- 52
             S +L+Y+ V + T+ KN+T ++ A GE+  F     +   ++  LM++S++         
Sbjct:   103 SKALQYLAVPIYTIFKNLTIILIAYGEVLFFGGSVTSMELSSFLLMVLSSVVATWGDQQA 162

Query:    53 ----SGGITDLSFHAV-----GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFS 103
                 +  + + +  AV     GY W   NC  +A + L +R      K++ K  N  +F 
Sbjct:   163 VAAKAASLAEGAAGAVASFNPGYFWMFTNCITSALFVLIMR------KRI-KLTNFKDFD 215

Query:   104 MVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV-MTLSGFLGLAISFTSMWFL 162
              +  NN L+LP  +LL+  F   D+ S        +  L  M +SG   + IS+ S W +
Sbjct:   216 TMFYNNVLALP--ILLLFSFCVEDWSSVNLTNNFSNDSLTAMIISGVASVGISYCSGWCV 273

Query:   163 HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 215
               T +TTYS+VG+LNK+P++++G++ F  P +  +  SIF G L+G+ +A AK
Sbjct:   274 RVTSSTTYSMVGALNKLPIALSGLIFFDAPRNFLSILSIFIGFLSGIIYAVAK 326

GO:0005739 "mitochondrion" evidence=IDA

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IMP;IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0015784 "GDP-mannose transport" evidence=IMP

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

DICTYBASE|DDB_G0278631 DDB_G0278631 "DUF250 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 249 (92.7 bits), Expect = 4.0e-21, P = 4.0e-21
 Identities = 58/214 (27%), Positives = 112/214 (52%)

Query:     4 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA 63
             SLK +N+ M + LK +  V+  V E ++  K    ++ A++ +M+I A+  GITDLSF++
Sbjct:   175 SLKQLNIPMYSALKRLVAVVILVMEYFILKKVSPPKIIASVVVMVIGAVVAGITDLSFNS 234

Query:    64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF 123
             +GY+  +++C   ASY + +++V         + N++ + M+  N+ LSLP+ + L+IV 
Sbjct:   235 LGYSLVLLSCIFQASYLIYVKKV---------ASNMSTYDMLYYNSVLSLPITIFLMIVN 285

Query:   124 NEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSV 183
              E++Y      L   SF     LS FLG  ++F   +        T S+ G +  I  ++
Sbjct:   286 QEIEYFQTFEHLYDSSFQAYFILSIFLGFFLNFCIFFCTSVNSPLTTSVTGQVKNIASTI 345

Query:   184 AGILLFK-VPTSLENSASIFFGLLAGVFFARAKM 216
              G ++F  +     N   +   ++  ++++  K+
Sbjct:   346 IGAMVFNDIIIHPINILGLIINIIGSIWYSFLKL 379

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

DICTYBASE|DDB_G0277007 DDB_G0277007 "GDP-fucose transporter" [Dictyostelium discoideum (taxid:44689)]

 Score = 188 (71.2 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 46/210 (21%), Positives = 103/210 (49%)

Query:     2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 61
             +L L+Y+ V+   V +++T   + +    +   +   R   A  ++ +  + G   +++F
Sbjct:   156 NLCLEYVEVSFYQVARSLTICFSLILTYIVLKSKTSYRATMACLVVFLGFVLGSAGEVNF 215

Query:    62 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVI 121
               +G  + +++ F  A YS+ ++RV+         GN  E+ + + N ++S+ L   L++
Sbjct:   216 SWLGIIFGLLSSFFVALYSIAVKRVLPAV-----DGN--EWRLSIYNTAISIGLIFPLIL 268

Query:   122 VFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPL 181
             V  E + +   PLL   +FW  MT++G +G  IS +    +  T   T ++ G++     
Sbjct:   269 VSGEANTILDEPLLYSGTFWFYMTVAGLMGYLISISVFMQIKHTSPLTNTISGTVKACVQ 328

Query:   182 SVAGILLFKVPTSLENSASIFFGLLAGVFF 211
             ++  ++ +  P S +N+  I   ++ G F+
Sbjct:   329 TILAVVFWGNPISTQNAVGILL-VIGGSFW 357

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q941R4	GONS1_ARATH	No assigned EC number	0.8801	0.9730	0.6516	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.2448.1 hypothetical protein (336 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
COG5070	309	COG5070, VRG4, Nucleotide-sugar transporter [Carbo	1e-28
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	0.003

>gnl|CDD|227402 COG5070, VRG4, Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  109 bits (273), Expect = 1e-28
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 15/227 (6%)

Query: 2   SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 61
           S SL+Y+ V + T+ KN+T ++ A GE+  F  R  +    +  LM++S++     D   
Sbjct: 86  SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQA 145

Query: 62  HA-------VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLP 114
            A        GY W   NC  +A++ L +R+ +          N  +F  +  NN LSLP
Sbjct: 146 SAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT-------NFKDFDTMFYNNLLSLP 198

Query: 115 LGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVG 174
           + +    +F +    +    L      + M +SG   + IS+ S W +  T +TTYS+VG
Sbjct: 199 ILLSFSFLFEDWSPGNLANNLS-VDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVG 257

Query: 175 SLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221
           +LNK+P+++AG++ F  P +  +  SI  G L+G  +A AK  ++  
Sbjct: 258 ALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQN 304

Length = 309

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 37/227 (16%), Positives = 73/227 (32%), Gaps = 35/227 (15%)

Query: 8   INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAV--- 64
           ++V +  + K    V+ A+G +    K+       +  LM + ++   + D  + ++   
Sbjct: 2   LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLL 61

Query: 65  -------------------GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMV 105
                              G     ++  L+A  S     V            L +   +
Sbjct: 62  KLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSGFAGVY-------FEKILKDGDTM 114

Query: 106 LLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL----VMTLSGFLGLAISFTSMWF 161
             + +L LPL    +     V   S   L+    F++     + + G L +         
Sbjct: 115 FWSRNLQLPL--FGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGV 172

Query: 162 LHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG 208
           +     TT S V +L+ I  ++A + LF    S           LA 
Sbjct: 173 VRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLAT 219

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.97
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.97
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.96
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.95
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.95
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.94
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.94
PLN00411	358	nodulin MtN21 family protein; Provisional	99.93
PRK11272	292	putative DMT superfamily transporter inner membran	99.93
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.92
PRK11689	295	aromatic amino acid exporter; Provisional	99.92
PRK15430	296	putative chloramphenical resistance permease RarD;	99.91
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.9
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.9
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.88
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.85
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.84
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.83
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.8
KOG1581	327	consensus UDP-galactose transporter related protei	99.76
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.75
KOG1580	337	consensus UDP-galactose transporter related protei	99.75
KOG2765	416	consensus Predicted membrane protein [Function unk	99.75
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.73
KOG1582	367	consensus UDP-galactose transporter related protei	99.71
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.7
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.69
COG2962	293	RarD Predicted permeases [General function predict	99.68
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.66
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.66
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.62
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.61
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.49
COG2510	140	Predicted membrane protein [Function unknown]	99.29
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.29
KOG2766	336	consensus Predicted membrane protein [Function unk	99.21
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.05
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.05
PRK15430	296	putative chloramphenical resistance permease RarD;	99.01
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.01
PLN00411	358	nodulin MtN21 family protein; Provisional	98.8
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.65
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.65
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.62
COG2962	293	RarD Predicted permeases [General function predict	98.56
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.56
PRK11272	292	putative DMT superfamily transporter inner membran	98.42
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.39
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.33
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.32
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.31
PRK11689	295	aromatic amino acid exporter; Provisional	98.3
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.23
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.21
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.17
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.13
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.05
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.92
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.89
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.72
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.62
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.6
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.58
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.52
COG2510	140	Predicted membrane protein [Function unknown]	97.45
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.4
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.33
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.28
COG2076	106	EmrE Membrane transporters of cations and cationic	97.2
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.16
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.15
PRK11431	105	multidrug efflux system protein; Provisional	97.15
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.02
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.97
PRK11431	105	multidrug efflux system protein; Provisional	96.88
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.86
PRK13499	345	rhamnose-proton symporter; Provisional	96.75
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.68
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.61
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.57
COG2076	106	EmrE Membrane transporters of cations and cationic	96.55
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	96.49
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.27
PRK13499	345	rhamnose-proton symporter; Provisional	96.19
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.11
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.01
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	95.82
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.72
KOG2765	416	consensus Predicted membrane protein [Function unk	93.64
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	93.36
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	92.01
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	91.35
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	91.08
KOG1580	337	consensus UDP-galactose transporter related protei	90.68
KOG1581	327	consensus UDP-galactose transporter related protei	90.2
KOG2922	335	consensus Uncharacterized conserved protein [Funct	88.09
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	87.77
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	85.85
PRK02237	109	hypothetical protein; Provisional	83.96
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	82.99

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.97  E-value=1.9e-30  Score=217.91  Aligned_cols=213  Identities=15%  Similarity=0.201  Sum_probs=172.6

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL   81 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v   81 (223)
                      |.|++|++++.+++++++.|+++++++++++|||++++++.+++++++|+.+....|.+++..|++++++|++++|+|.+
T Consensus        83 ~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v  162 (302)
T TIGR00817        83 NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNI  162 (302)
T ss_pred             HHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999988777777888899999999999999999


Q ss_pred             HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccc-cCCC----CccchHHHHHHHHHHHH-HHHH
Q 027434           82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLS-RTPL----LRLPSFWLVMTLSGFLG-LAIS  155 (223)
Q Consensus        82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~-~~~~  155 (223)
                      ..||..++       .+.++.+...|++..+...+.+.....|+.+... +...    ......+...+..+... ...+
T Consensus       163 ~~k~~~~~-------~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (302)
T TIGR00817       163 FSKKAMTI-------KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQ  235 (302)
T ss_pred             HHHHhhcc-------CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence            99998652       2578889999999888888888877665432111 1000    11112232233333322 2233


Q ss_pred             HHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhc
Q 027434          156 FTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ  221 (223)
Q Consensus       156 ~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~  221 (223)
                      ...+.++|++||+++++.+++||++++++|++++||++|..+++|+++++.|+++|++.|.||++.
T Consensus       236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            444578999999999999999999999999999999999999999999999999999887666554

specificities overlap.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.9e-30  Score=210.50  Aligned_cols=214  Identities=38%  Similarity=0.649  Sum_probs=196.0

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL   81 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v   81 (223)
                      ..+++|+|+|.++++|+.+|+++++.+..++|.|+++..+.++..+.+|......+|.+++..|+.|++.+.++.+.+.+
T Consensus        95 ~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v  174 (314)
T KOG1444|consen   95 SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVV  174 (314)
T ss_pred             cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccc-ccCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 027434           82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-SRTPLLRLPSFWLVMTLSGFLGLAISFTSMW  160 (223)
Q Consensus        82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
                      ..|+..+.       .+.+.+++++|+++.++|.+.+..+++||++.. .+.+.+.++.+|..+.++|++++.++|+.++
T Consensus       175 ~~kk~vd~-------~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~  247 (314)
T KOG1444|consen  175 YVKKSVDS-------ANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFL  247 (314)
T ss_pred             HHHHhhcc-------ccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999874       467999999999999999999999999998833 3455677777889999999999999999999


Q ss_pred             HHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhcC
Q 027434          161 FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS  222 (223)
Q Consensus       161 ~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~  222 (223)
                      |.+..|+++.++++..++..+.+.++.++|++.++...+|..+.++|..+|++.+.|||+++
T Consensus       248 ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~  309 (314)
T KOG1444|consen  248 CTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP  309 (314)
T ss_pred             HHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence            99999999999999666666666666677899999999999999999999999998877765

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.96  E-value=4e-28  Score=207.52  Aligned_cols=212  Identities=14%  Similarity=0.218  Sum_probs=174.1

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL   81 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v   81 (223)
                      +.|+++++++++++++++.|+++++++++++|||++++++.+++++++|+.+...+|.++++.|++++++|++++|.|++
T Consensus       132 ~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i  211 (350)
T PTZ00343        132 VISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSI  211 (350)
T ss_pred             HHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999888888998999999999999999999


Q ss_pred             HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccc--ccc-c----CCCCccchHHHHHHHHHHHHHHH
Q 027434           82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVD--YLS-R----TPLLRLPSFWLVMTLSGFLGLAI  154 (223)
Q Consensus        82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~~~~~~~~~~~~~~~~~  154 (223)
                      +.||.+++.+.  ...+.++.+...+..+.+..++++.....|...  ..+ +    ...+....++..++.+++..+..
T Consensus       212 ~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~  289 (350)
T PTZ00343        212 FAKKTMKNKSE--IGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLY  289 (350)
T ss_pred             HHHHHhccccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH
Confidence            99998764210  011355666666667778888777766554321  111 0    11111122334566677777888


Q ss_pred             HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434          155 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  215 (223)
Q Consensus       155 ~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  215 (223)
                      +.+.|+++++++|.++++.+++||++++++|++++||++|..+++|.++++.|+++|++.|
T Consensus       290 n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        290 NEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            8888889999999999999999999999999999999999999999999999999998863

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.95  E-value=1.8e-26  Score=193.94  Aligned_cols=210  Identities=20%  Similarity=0.269  Sum_probs=180.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccc----cc------hhhHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLS----FH------AVGYAWQII   71 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~----~~------~~G~~~~l~   71 (223)
                      |.|++|+|.|+++++|++.|+++++++.+++|+|++++++.+++++++|+.+....|.+    .+      ..|+++.++
T Consensus        82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~  161 (303)
T PF08449_consen   82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLL  161 (303)
T ss_pred             HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999998765421    11      239999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHH--hccccccccCCCCccchHHHHHHHHHH
Q 027434           72 NCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIV--FNEVDYLSRTPLLRLPSFWLVMTLSGF  149 (223)
Q Consensus        72 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (223)
                      +.++.|.+.+++||..+++       +.+++++++|++..+.|...+....  .+|..+..++... .+..+..++..+.
T Consensus       162 sl~~~a~~~~~qe~~~~~~-------~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~-~p~~~~~l~~~s~  233 (303)
T PF08449_consen  162 SLLLDAFTGVYQEKLFKKY-------GKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISA-HPSVLLYLLLFSL  233 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH-hHHHHHHHHHHHH
Confidence            9999999999999998853       5688999999999999999988887  6666554433221 2334566677777


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhh
Q 027434          150 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER  219 (223)
Q Consensus       150 ~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~  219 (223)
                      ++..-....+.++++.||++.+++..++++.++++++++||+++++.+|+|.++++.|..+|.+.|+|||
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            7766666667789999999999999999999999999999999999999999999999999999988875

; GO: 0055085 transmembrane transport

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.95  E-value=3e-28  Score=202.43  Aligned_cols=215  Identities=19%  Similarity=0.361  Sum_probs=185.6

Q ss_pred             CcccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHH
Q 027434            1 MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYS   80 (223)
Q Consensus         1 ~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~   80 (223)
                      +|.|++|+|++++|++|++.|+++.+++.++.+|+.++..+++++.+..|+.+.+.+|.++|+.|+..++++.+..++++
T Consensus       100 ~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~  179 (316)
T KOG1441|consen  100 GNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRN  179 (316)
T ss_pred             cchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHH-HHHHHhcccccc-ccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 027434           81 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGV-LLVIVFNEVDYL-SRTPLLRLPSFWLVMTLSGFLGLAISFTS  158 (223)
Q Consensus        81 v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (223)
                      ++.|+.+++.     ..++++.+++.|++.++...++ |.....+..... .....+ +..++..+ +..++.++.+.+.
T Consensus       180 I~~~~ll~~~-----~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~sv~~f~~Nls~  252 (316)
T KOG1441|consen  180 ILSKKLLTSK-----GESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPW-FVTFLILL-LNSVLAFLLNLSA  252 (316)
T ss_pred             HHHHHhhhcc-----ccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecccc-chhhHHHH-HHHHHHHHHHHHH
Confidence            9999998642     2579999999999998888888 544332221110 011112 12234333 3449999999999


Q ss_pred             HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhcC
Q 027434          159 MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS  222 (223)
Q Consensus       159 ~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~  222 (223)
                      |+++.++||+++++.+.+|.++.++.|+++|+|+.|+.+..|+++.+.|+++|++.|.|+++++
T Consensus       253 f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~  316 (316)
T KOG1441|consen  253 FLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKGK  316 (316)
T ss_pred             HHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            9999999999999999999999999999999999999999999999999999999999988764

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.94  E-value=5.7e-25  Score=184.51  Aligned_cols=207  Identities=9%  Similarity=0.080  Sum_probs=159.6

Q ss_pred             ccccc-cchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc---cccchhhHHHHHHHHHHHHH
Q 027434            3 LSLKY-INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTAS   78 (223)
Q Consensus         3 ~al~~-~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d---~~~~~~G~~~~l~a~~~~a~   78 (223)
                      .+++| .|++.+.++.++.|+++.+++++++|||++++++++++++++|+.+...++   .+.+..|+.+++.++++||.
T Consensus        78 ~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~  157 (299)
T PRK11453         78 CAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWAC  157 (299)
T ss_pred             HHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHH
Confidence            46677 689999999999999999999999999999999999999999999876432   23345799999999999999


Q ss_pred             HHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccc-ccCCCCccchHHHHHHHHHHHHHHHHHH
Q 027434           79 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-SRTPLLRLPSFWLVMTLSGFLGLAISFT  157 (223)
Q Consensus        79 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (223)
                      |.+..||..++.      .+........++...+...........++.... .....+ +...|..+++.++++..++|.
T Consensus       158 ~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~i~~t~~~~~  230 (299)
T PRK11453        158 GNIFNKKIMSHS------TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTI-DMTTILSLMYLAFVATIVGYG  230 (299)
T ss_pred             HHHHHHHHhccc------CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccC-CHHHHHHHHHHHHHHHHHHHH
Confidence            999999975421      122223334454444443333333333332211 011111 334578899999999999999


Q ss_pred             HH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434          158 SM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM  216 (223)
Q Consensus       158 ~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  216 (223)
                      .+ +.+|+.+|.+++.+.+++|+++.++|++++||+++..+++|+++++.|+++..+.++
T Consensus       231 l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        231 IWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            87 678999999999999999999999999999999999999999999999987654333

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.94  E-value=3.2e-26  Score=177.56  Aligned_cols=211  Identities=31%  Similarity=0.578  Sum_probs=188.0

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccc--------cchhhHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLS--------FHAVGYAWQIINC   73 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~--------~~~~G~~~~l~a~   73 (223)
                      ++++||+++|.+++.++++.+.++..+..++|.|.+.....+..++++..+...|+|.+        .| .|++|+..++
T Consensus        86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Nc  164 (309)
T COG5070          86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNC  164 (309)
T ss_pred             ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhh
Confidence            57999999999999999999999999999999999999999999999999999999873        34 8999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHH
Q 027434           74 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA  153 (223)
Q Consensus        74 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (223)
                      +..|+|-+.+|+..+-       .+...++.++|+|+.+.|+++..++.+|||++..-..+. ......++.++|++++.
T Consensus       165 lssaafVL~mrkri~l-------tNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl-~~d~l~am~ISgl~svg  236 (309)
T COG5070         165 LSSAAFVLIMRKRIKL-------TNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNL-SVDSLMAMFISGLCSVG  236 (309)
T ss_pred             HhHHHHHHHHHHhhcc-------cccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCC-ChHHHHHHHHHHHHHhh
Confidence            9999999999998763       245678999999999999999999999999865322222 22224578899999999


Q ss_pred             HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhc
Q 027434          154 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ  221 (223)
Q Consensus       154 ~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~  221 (223)
                      ++|+.-||+|.+|++++|+++.+++....+.|.++|||+.+...+..+.+...+..+|.+++.||+++
T Consensus       237 iSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~  304 (309)
T COG5070         237 ISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQN  304 (309)
T ss_pred             hhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999988765543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.93  E-value=2.9e-24  Score=183.56  Aligned_cols=209  Identities=12%  Similarity=0.141  Sum_probs=156.9

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHH------hCcccChhHHHHHHHHHHhhhhhccc-cc---------------
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYL------FNKRHDNRVWAALFLMIISAISGGIT-DL---------------   59 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~------~~e~~s~~~~~~l~l~~~Gv~~~~~~-d~---------------   59 (223)
                      +.+++|+|++.+.++.++.|+++.++++++      +|||++++++.|++++++|+.+.... +.               
T Consensus        96 ~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~  175 (358)
T PLN00411         96 YIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQ  175 (358)
T ss_pred             HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccc
Confidence            468999999999999999999999999999      69999999999999999999876531 11               


Q ss_pred             --------ccc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccc-cc
Q 027434           60 --------SFH-AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVD-YL  129 (223)
Q Consensus        60 --------~~~-~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  129 (223)
                              ..+ ..|.++++.|+++||.|++..|+..++..        +.....+++..++.....+.....++.+ ..
T Consensus       176 ~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~  247 (358)
T PLN00411        176 LSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP--------AAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV  247 (358)
T ss_pred             cccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------cHhHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence                    112 35999999999999999999999866421        2223344444443333433344433211 11


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHH
Q 027434          130 SRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG  208 (223)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~  208 (223)
                      +. ..+ +...+ .+++.++++ .++|..+ +++|+.+|.++++..+++|++++++|++++||++++.+++|+++++.|+
T Consensus       248 ~~-~~~-~~~~~-~i~y~~i~t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv  323 (358)
T PLN00411        248 WI-IHF-DITLI-TIVTMAIIT-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGF  323 (358)
T ss_pred             ce-ecc-chHHH-HHHHHHHHH-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence            11 111 22222 456666654 4577765 7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhcC
Q 027434          209 VFFARAKMWERSQS  222 (223)
Q Consensus       209 ~~~~~~~~~~~~~~  222 (223)
                      ++.++.++||.|++
T Consensus       324 ~l~~~~~~~~~~~~  337 (358)
T PLN00411        324 YAVMWGKANEEKDQ  337 (358)
T ss_pred             HHHHhhhhhhhhhc
Confidence            99887776655543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.93  E-value=7.4e-24  Score=177.19  Aligned_cols=199  Identities=13%  Similarity=0.029  Sum_probs=160.8

Q ss_pred             ccc-cccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-ccccchhhHHHHHHHHHHHHHHH
Q 027434            3 LSL-KYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-DLSFHAVGYAWQIINCFLTASYS   80 (223)
Q Consensus         3 ~al-~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~-d~~~~~~G~~~~l~a~~~~a~~~   80 (223)
                      .+. +++|++.++++.++.|+++.+++.+ +|||++++++.+++++++|+.+...+ +.+.+..|++++++++++||.|.
T Consensus        88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~  166 (292)
T PRK11272         88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGS  166 (292)
T ss_pred             HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHH
Confidence            345 8899999999999999999999985 69999999999999999999987643 34455689999999999999999


Q ss_pred             HHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-
Q 027434           81 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-  159 (223)
Q Consensus        81 v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (223)
                      +..||..++          ++.....++...+.+.+.+.....++...  .   ..+...|..+++.++++..++|..| 
T Consensus       167 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~i~~l~i~~s~~~~~l~~  231 (292)
T PRK11272        167 VWSSRLPLP----------VGMMAGAAEMLAAGVVLLIASLLSGERLT--A---LPTLSGFLALGYLAVFGSIIAISAYM  231 (292)
T ss_pred             HHHHhcCCC----------cchHHHHHHHHHHHHHHHHHHHHcCCccc--c---cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999986431          22334455556666666655544333211  1   1123447788888999988888876 


Q ss_pred             HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          160 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       160 ~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      +++|+.++.+.+...+++|+.+.+++++++||+++..+++|+++++.|+++.+..++|
T Consensus       232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        232 YLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999999999999999999999999999999999988776665

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.92  E-value=3e-23  Score=170.29  Aligned_cols=193  Identities=14%  Similarity=0.085  Sum_probs=157.6

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-ccccchhhHHHHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-DLSFHAVGYAWQIINCFLTASYS   80 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~-d~~~~~~G~~~~l~a~~~~a~~~   80 (223)
                      +.|++|+|++.++++.++.|+++++++.+++|||++++++.+++++++|+.+...+ +.+.+..|+.++++++++++.+.
T Consensus        65 ~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~  144 (260)
T TIGR00950        65 FVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGT  144 (260)
T ss_pred             HHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999887544 34455689999999999999999


Q ss_pred             HHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-
Q 027434           81 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-  159 (223)
Q Consensus        81 v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (223)
                      +..|+..++.       +.++.....+.+..+.+.+.+.....++...      . +...|..+++.++++..++|..+ 
T Consensus       145 ~~~k~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~  210 (260)
T TIGR00950       145 VLYKRLVKKE-------GPELLQFTGWVLLLGALLLLPFAWFLGPNPQ------A-LSLQWGALLYLGLIGTALAYFLWN  210 (260)
T ss_pred             HHHhHHhhcC-------CchHHHHHHHHHHHHHHHHHHHHHhcCCCCC------c-chHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999986531       2223333334566666666666554433211      1 22346667888888888888876 


Q ss_pred             HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHH
Q 027434          160 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG  208 (223)
Q Consensus       160 ~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~  208 (223)
                      +++|+.++.+++...+++|+.+.+++++++||+++..+++|.++++.|+
T Consensus       211 ~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       211 KGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999999999999999885

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.92  E-value=3.9e-23  Score=173.07  Aligned_cols=192  Identities=10%  Similarity=0.071  Sum_probs=146.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc-----------ccchhhHHHHHHHHH
Q 027434            6 KYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-----------SFHAVGYAWQIINCF   74 (223)
Q Consensus         6 ~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~-----------~~~~~G~~~~l~a~~   74 (223)
                      ++.+...+.++.++.|+++.+++++++|||++++++.+++++++|+.+...+|.           +.+..|+.+++.+++
T Consensus        87 ~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~  166 (295)
T PRK11689         87 TRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAF  166 (295)
T ss_pred             ccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHH
Confidence            456778889999999999999999999999999999999999999988765432           123469999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHH
Q 027434           75 LTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI  154 (223)
Q Consensus        75 ~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (223)
                      +||.|.++.||..++         .++.....   ..+...+.+.....+++.  .   .+ +...|..+++.++ +..+
T Consensus       167 ~~A~~~v~~k~~~~~---------~~~~~~~~---~~~~~~l~~~~~~~~~~~--~---~~-~~~~~~~l~~~~~-~t~~  227 (295)
T PRK11689        167 IWAAYCNVTRKYARG---------KNGITLFF---ILTALALWIKYFLSPQPA--M---VF-SLPAIIKLLLAAA-AMGF  227 (295)
T ss_pred             HHHHHHHHHhhccCC---------CCchhHHH---HHHHHHHHHHHHHhcCcc--c---cC-CHHHHHHHHHHHH-HHHH
Confidence            999999999997542         34433322   122222222222222211  1   11 2233666677775 5667


Q ss_pred             HHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434          155 SFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM  216 (223)
Q Consensus       155 ~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  216 (223)
                      +|..+ +++|+.+|.+++...+++|++++++|++++||+++..+++|+++++.|+......++
T Consensus       228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            77776 789999999999999999999999999999999999999999999999887755444

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.91  E-value=3.2e-22  Score=167.65  Aligned_cols=197  Identities=11%  Similarity=0.099  Sum_probs=141.4

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL   81 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v   81 (223)
                      ++|++++|++.++++.++.|+++.+++++++|||++++++.+++++++|+.+...++.+.    ..++++++++||.|.+
T Consensus        91 ~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~aa~~~a~~~i  166 (296)
T PRK15430         91 IWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALGLAFSFAFYGL  166 (296)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999876433222    2468889999999999


Q ss_pred             HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-H
Q 027434           82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-W  160 (223)
Q Consensus        82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  160 (223)
                      ..||..++       ...+......+....+.+.    .....+... .... ..+...+..+.+.|+. ..+.|.++ +
T Consensus       167 ~~r~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~-t~i~~~~~~~  232 (296)
T PRK15430        167 VRKKIAVE-------AQTGMLIETMWLLPVAAIY----LFAIADSST-SHMG-QNPMSLNLLLIAAGIV-TTVPLLCFTA  232 (296)
T ss_pred             HHHhcCCC-------CchhHHHHHHHHHHHHHHH----HHHHccCCc-cccc-CCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            98886331       1111122222322222222    111111111 0111 1111123344445554 44666665 7


Q ss_pred             HHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434          161 FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM  216 (223)
Q Consensus       161 ~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  216 (223)
                      ++|+.+|..+|...+++|+++.++|++++||+++..+++|+++++.|+.+...+..
T Consensus       233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~  288 (296)
T PRK15430        233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI  288 (296)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999888777655444

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.90  E-value=4e-22  Score=166.84  Aligned_cols=199  Identities=13%  Similarity=0.043  Sum_probs=153.0

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc--c-cccchhhHHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT--D-LSFHAVGYAWQIINCFLTAS   78 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~--d-~~~~~~G~~~~l~a~~~~a~   78 (223)
                      +++++|+|++.++++.++.|+++.+++    +||+++  ...+.++++|+.+....  | .+.+..|++++++++++||.
T Consensus        89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~  162 (293)
T PRK10532         89 YLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAI  162 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHH
Confidence            468999999999999999999998887    366554  44567789999876432  2 23456799999999999999


Q ss_pred             HHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 027434           79 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS  158 (223)
Q Consensus        79 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (223)
                      |.+..||..++         .++... .+....+...+.+.....++ ..     . .++..|..+++.|+++..++|..
T Consensus       163 ~~v~~r~~~~~---------~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~-----~-~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        163 YILSGQRAGAE---------HGPATV-AIGSLIAALIFVPIGALQAG-EA-----L-WHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             HHHHHHHHhcc---------CCchHH-HHHHHHHHHHHHHHHHHccC-cc-----c-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998542         344443 34445555444444433221 11     1 12233556678899999999988


Q ss_pred             H-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhcCC
Q 027434          159 M-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG  223 (223)
Q Consensus       159 ~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~~  223 (223)
                      + +.+|+.+|.+++...++||++++++|++++||+++..+++|+++++.|++.+...++|+.|.+|
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~  291 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE  291 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            5 7899999999999999999999999999999999999999999999999999887777766654

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=6.9e-25  Score=174.75  Aligned_cols=210  Identities=21%  Similarity=0.301  Sum_probs=193.4

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc---cccchhhHHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTAS   78 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d---~~~~~~G~~~~l~a~~~~a~   78 (223)
                      |++|+|++++++.+-|++..+|+.++.+.++|+|-+.....++.++++|-.+-...|   ....+.|.++++.|.++.|+
T Consensus       120 nlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAl  199 (347)
T KOG1442|consen  120 NLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVAL  199 (347)
T ss_pred             ceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999887766   45679999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 027434           79 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS  158 (223)
Q Consensus        79 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (223)
                      ..++.||.....       .-.-|.+..|+|+.+..+.++...+.||.+.+..++...+..+|..+.++|++++.++|..
T Consensus       200 naiytkk~l~~v-------~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT  272 (347)
T KOG1442|consen  200 NAIYTKKVLPPV-------GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT  272 (347)
T ss_pred             HHHhhheecccc-------cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee
Confidence            999999886632       3357899999999999999999999999998888887767788999999999999999999


Q ss_pred             HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhh
Q 027434          159 MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE  218 (223)
Q Consensus       159 ~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  218 (223)
                      .+-+|.+||+++++.+.-|....++++..+++|..+..-|-|-.+++.|...|++.|+++
T Consensus       273 g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~e  332 (347)
T KOG1442|consen  273 GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHE  332 (347)
T ss_pred             eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999999999877643

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.88  E-value=1e-21  Score=165.23  Aligned_cols=203  Identities=12%  Similarity=0.109  Sum_probs=159.1

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc---------ccchhhHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------SFHAVGYAWQIIN   72 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~---------~~~~~G~~~~l~a   72 (223)
                      +.|++|++++.++++.+++.+++++++++++|||+++.++.|++++++|+.+....|.         +....|+++++.+
T Consensus        97 v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~  176 (334)
T PF06027_consen   97 VLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLG  176 (334)
T ss_pred             HHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999998765542         2347999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHH
Q 027434           73 CFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGL  152 (223)
Q Consensus        73 ~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (223)
                      +++||.+++..|+..|+         .+..+.+..-.+++.++..+...+. |..+..+.+ |.. ..+. ......++.
T Consensus       177 a~lya~~nV~~E~~v~~---------~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~-w~~-~~~~-~~v~~~~~l  243 (334)
T PF06027_consen  177 AILYAVSNVLEEKLVKK---------APRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIH-WTS-QVIG-LLVGYALCL  243 (334)
T ss_pred             HHHHHHHHHHHHHhccc---------CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccC-CCh-hhHH-HHHHHHHHH
Confidence            99999999999999873         3566666666666777766665554 333333322 322 2222 222222233


Q ss_pred             HHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          153 AISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       153 ~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      ...|+.. ..++..||+..++......+.++++++++||+++++..++|.++++.|.++|+..+++
T Consensus       244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~  309 (334)
T PF06027_consen  244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP  309 (334)
T ss_pred             HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence            3445443 4679999999999888899999999999999999999999999999999999765543

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.85  E-value=1.4e-20  Score=156.67  Aligned_cols=197  Identities=13%  Similarity=0.156  Sum_probs=144.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc-cccchhhHHHHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD-LSFHAVGYAWQIINCFLTASYS   80 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d-~~~~~~G~~~~l~a~~~~a~~~   80 (223)
                      ++++++.|++....+.++.|+++.+++.+++|||++++++.|+.+++.|+.+....| .+.+..|..++++++++++.|.
T Consensus        81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~  160 (281)
T TIGR03340        81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS  160 (281)
T ss_pred             HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence            568899999999999999999999999999999999999999999999999876443 2344578889999999999999


Q ss_pred             HHHHHHhhhhhhhhccCCCCchhHHHHHhhhH-HHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH
Q 027434           81 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLS-LPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM  159 (223)
Q Consensus        81 v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (223)
                      +..|+..++.+     ...+......+..... .|.... ....++. .. .   ..+.. +...++.+.+...++|..+
T Consensus       161 i~~k~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-~---~~~~~-~~~~~~~~~~~s~l~~~l~  228 (281)
T TIGR03340       161 LSDKAAALGVP-----AFYSALGYLGIGFLAMGWPFLLL-YLKRHGR-SM-F---PYARQ-ILPSATLGGLMIGGAYALV  228 (281)
T ss_pred             hhccccccchh-----cccccHHHHHHHHHHHHHHHHHH-HHHHhcc-ch-h---hhHHH-HHHHHHHHHHHHHHHHHHH
Confidence            98877533210     0111111222222222 222221 1111221 10 0   11112 3345566666667777775


Q ss_pred             -HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHH
Q 027434          160 -WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVF  210 (223)
Q Consensus       160 -~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~  210 (223)
                       +++|+.++..++...+++|+++.++|++++||+++..+++|+++++.|+.+
T Consensus       229 ~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       229 LWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence             689999999999999999999999999999999999999999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.84  E-value=2.4e-20  Score=151.07  Aligned_cols=208  Identities=15%  Similarity=0.190  Sum_probs=175.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL   81 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v   81 (223)
                      |+|++|++++.||+.|+.+++|+.+++.++--||+++.-...+.++.+|+++.++.+.|+|..|++++..|+++.++.-.
T Consensus       102 N~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~  181 (349)
T KOG1443|consen  102 NWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWA  181 (349)
T ss_pred             cceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccc-c----cCCCCcc-chHHHHHHHHHHHHHHHH
Q 027434           82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-S----RTPLLRL-PSFWLVMTLSGFLGLAIS  155 (223)
Q Consensus        82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~-~~~~~~~~~~~~~~~~~~  155 (223)
                      +.+++++|.+    ..+-+|.+++++-.......+++..+.+|.+... .    ++.+..+ ......+.+.|..++...
T Consensus       182 ~tQ~ll~~~~----~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~  257 (349)
T KOG1443|consen  182 FTQMLLRNQP----SAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLE  257 (349)
T ss_pred             HHHHHHhcCc----cccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence            9999988642    2345677777766665556666677777665433 1    1111111 112346667888888889


Q ss_pred             HHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          156 FTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       156 ~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      ++.|..+.+++..+.|+.+..|.+.+.++|..+.+|+++..+|.|..++..|+..+.+
T Consensus       258 ~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  258 FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence            9999889999999999999999999999999999999999999999999999998844

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.83  E-value=2.1e-18  Score=142.85  Aligned_cols=195  Identities=18%  Similarity=0.264  Sum_probs=152.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHH-HHhCcccChhHHHHHHHHHHhhhhhcccccccc---hhhHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEM-YLFNKRHDNRVWAALFLMIISAISGGITDLSFH---AVGYAWQIINCFLTA   77 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~-~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~---~~G~~~~l~a~~~~a   77 (223)
                      +.++++++++.++.+.++.|+++.+++. +++|||++++++.++.+.+.|+.+....+...+   ..|..+++.+++++|
T Consensus        88 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a  167 (292)
T COG0697          88 FLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWA  167 (292)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999997 777999999999999999999999987654332   589999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhccCCCCchhHHH-HHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHH
Q 027434           78 SYSLTLRRVMDTAKQVTKSGNLNEFSMVL-LNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISF  156 (223)
Q Consensus        78 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (223)
                      .+.+..|+.. +         .++..... +...  ............+..    .  ..+...|..+.+.|+++..+++
T Consensus       168 ~~~~~~~~~~-~---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~g~~~~~i~~  229 (292)
T COG0697         168 LYTALVKRLS-R---------LGPVTLALLLQLL--LALLLLLLFFLSGFG----A--PILSRAWLLLLYLGVFSTGLAY  229 (292)
T ss_pred             HHHHHHHHhc-C---------CChHHHHHHHHHH--HHHHHHHHHHhcccc----c--cCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999875 2         23434433 2222  111121111111111    1  1122336677888888887777


Q ss_pred             HHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhh
Q 027434          157 TSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  214 (223)
Q Consensus       157 ~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  214 (223)
                      ..+ +.+++.++...+.....+|+.+.+++++++||+++..+++|+++++.|+.+...+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            775 6899999999999999999999999999999999999999999999999888776

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.80  E-value=1.1e-18  Score=132.14  Aligned_cols=147  Identities=18%  Similarity=0.396  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCC-----CCc-cc
Q 027434           65 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTP-----LLR-LP  138 (223)
Q Consensus        65 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~  138 (223)
                      |+++++.|.++.|++.++.|+.+++.+  .++.+.++.++++|++..+.+.+.+.....|+++......     ... ++
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~--~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~   78 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVS--SNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDP   78 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchH
Confidence            788999999999999999999988631  1235789999999999999999999998888766322111     111 34


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          139 SFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      ..+..++..|++++..+++.+++++++||+++++.+++|.+..++.|+++|||++|..+++|+++++.|+.+|+|
T Consensus        79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            567788999999999999999999999999999999999999999999999999999999999999999999975

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.76  E-value=2.5e-17  Score=133.64  Aligned_cols=207  Identities=12%  Similarity=0.077  Sum_probs=174.3

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc---------ccchhhHHHHHHHH
Q 027434            3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------SFHAVGYAWQIINC   73 (223)
Q Consensus         3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~---------~~~~~G~~~~l~a~   73 (223)
                      +||+|++-|+.++.|++.-+.+++.+.+++|+|.+..+.+...++..|+-+....+.         .+...|+.+...+.
T Consensus       102 eaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L  181 (327)
T KOG1581|consen  102 EALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYL  181 (327)
T ss_pred             HHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999988654311         24479999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHH
Q 027434           74 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA  153 (223)
Q Consensus        74 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (223)
                      ...+.-+..++++.++       .++++++++++.|+.++.......+..|++.+..++-.. +++++.-+++-+.++.+
T Consensus       182 ~fDgfTn~tQd~lf~~-------~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~-hp~~~~Di~l~s~~gav  253 (327)
T KOG1581|consen  182 LFDGFTNATQDSLFKK-------YKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKE-HPDVAFDILLYSTCGAV  253 (327)
T ss_pred             HHHhhHHhHHHHHhcc-------CCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHc-ChhHHHHHHHHHHhhhh
Confidence            9999999999999885       478999999999999999998887666776654433222 24445556666777766


Q ss_pred             HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          154 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       154 ~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      -+...|+.+++-+|.+.+++...++++++.++.++||.+++..||.|..+++.|.++-...+.|
T Consensus       254 GQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  254 GQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             hhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            6777778899999999999999999999999999999999999999999988887765554443

>TIGR00688 rarD rarD protein

Probab=99.75  E-value=7.5e-17  Score=132.38  Aligned_cols=167  Identities=11%  Similarity=0.175  Sum_probs=120.2

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL   81 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v   81 (223)
                      +.|+|++|++.++++.++.|+++++++++++|||++++++.+++++++|+.+...++.+.+    .+++.++++||.|.+
T Consensus        88 ~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i  163 (256)
T TIGR00688        88 IWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGL  163 (256)
T ss_pred             HHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999988754322211    367889999999999


Q ss_pred             HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-H
Q 027434           82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-W  160 (223)
Q Consensus        82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  160 (223)
                      ..||..++          +..+.. ..+....|........ +++......   .+...|..+++.|++ ..++|..+ +
T Consensus       164 ~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~l~~~g~~-t~i~~~l~~~  227 (256)
T TIGR00688       164 IRKALKNT----------DLAGFC-LETLSLMPVAIYYLLQ-TDFATVQQT---NPFPIWLLLVLAGLI-TGTPLLAFVI  227 (256)
T ss_pred             HHhhcCCC----------CcchHH-HHHHHHHHHHHHHHHH-hccCccccc---CchhHHHHHHHHHHH-HHHHHHHHHH
Confidence            98886331          122222 2122333333332222 222111111   111136667777777 55677776 7


Q ss_pred             HHhhcchhHHHHHhhhhhHHHHHHHHHh
Q 027434          161 FLHQTGATTYSLVGSLNKIPLSVAGILL  188 (223)
Q Consensus       161 ~~~~~s~~~~si~~~l~~v~~~~~~~~~  188 (223)
                      ++|+.++..++...+++|+++.++|.+.
T Consensus       228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       228 AANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.75  E-value=2.7e-18  Score=134.65  Aligned_cols=203  Identities=14%  Similarity=0.068  Sum_probs=170.3

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc--------cccchhhHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD--------LSFHAVGYAWQIINC   73 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d--------~~~~~~G~~~~l~a~   73 (223)
                      |.|+||+|.|+..+-+++.|+-+++++..+.|++.+|++...+++++.|+.+..+.+        -.+ -.|-++.++|.
T Consensus       103 N~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~-g~GElLL~lSL  181 (337)
T KOG1580|consen  103 NQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTF-GFGELLLILSL  181 (337)
T ss_pred             cchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCccccc-chHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999876542        223 38999999998


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHH
Q 027434           74 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA  153 (223)
Q Consensus        74 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (223)
                      -..++-...++++...       ..-+...+++|.|+.+...+....+++||..+...+..- .|..|.-+.+.++.+.+
T Consensus       182 ~mDGlTg~~Qdrira~-------yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~R-hP~~~~~l~l~ai~s~L  253 (337)
T KOG1580|consen  182 AMDGLTGSIQDRIRAS-------YQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQR-HPYVFWDLTLLAIASCL  253 (337)
T ss_pred             HhcccchhHHHHHHHh-------hccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHh-ccHHHHHHHHHHHHHHh
Confidence            8888888888887553       244678899999999999999888888886654433221 23335567777888887


Q ss_pred             HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          154 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       154 ~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      -+.+.|..+...+|++-|++...++.++++.++++|+++++..||+|.++++.+...=..
T Consensus       254 GQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  254 GQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV  313 (337)
T ss_pred             hhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence            788888889999999999999999999999999999999999999999999988765433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.75  E-value=1.4e-17  Score=138.48  Aligned_cols=205  Identities=17%  Similarity=0.122  Sum_probs=156.1

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--------ccchhhHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQIINC   73 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~--------~~~~~G~~~~l~a~   73 (223)
                      |.||.+++++..+++.+++-+|++.++.++..||+++.|.+++.+.+.|+++++.+|.        +.+..|.++++.+|
T Consensus       177 naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~sA  256 (416)
T KOG2765|consen  177 NAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALLSA  256 (416)
T ss_pred             HHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999987643        23378999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhh----HHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHH
Q 027434           74 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSL----SLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGF  149 (223)
Q Consensus        74 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (223)
                      +.||.|.+..||...+++     .+++......|.-++    ..|.+.++-...+|     +++.+....+ ..+++.+.
T Consensus       257 ~~YavY~vllk~~~~~eg-----~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e-----~F~lP~~~q~-~~vv~~~l  325 (416)
T KOG2765|consen  257 LLYAVYTVLLKRKIGDEG-----ERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEE-----RFELPSSTQF-SLVVFNNL  325 (416)
T ss_pred             HHHHHHHHHHHhhccccc-----ccccHHHHHHHHHHHHHHHHhHHHHHHHHhccC-----cccCCCCcee-EeeeHhhH
Confidence            999999999999877532     255554444443333    34444444333222     2222222232 23444555


Q ss_pred             HHHHH-HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          150 LGLAI-SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       150 ~~~~~-~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      .+..+ .|.=-++.-.++|+.+....++....+++..+++=|.++|+.+++|...+++|.+..++..+-
T Consensus       326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~  394 (416)
T KOG2765|consen  326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN  394 (416)
T ss_pred             HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence            55544 443224566799999999999999999999999999999999999999999999988775553

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.73  E-value=4e-16  Score=130.38  Aligned_cols=190  Identities=15%  Similarity=0.175  Sum_probs=145.5

Q ss_pred             cccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhH----HHHHHHHHHhhhhhcccccc-------cc-hhhHHH
Q 027434            2 SLSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRV----WAALFLMIISAISGGITDLS-------FH-AVGYAW   68 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~-~~pi~~~i~~~~~~~e~~s~~~----~~~l~l~~~Gv~~~~~~d~~-------~~-~~G~~~   68 (223)
                      +.|.++++++.+..+.+ +.|+++.+.+.+++|||.++++    ..+++++++|+++....+.+       .+ ..|.++
T Consensus        77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~  156 (290)
T TIGR00776        77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILL  156 (290)
T ss_pred             HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHH
Confidence            45788999999999988 8888999999999999999999    99999999999987643211       33 689999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhh----hHHHHHHHHHHHhccccccccCCCCccchHHHHH
Q 027434           69 QIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNS----LSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM  144 (223)
Q Consensus        69 ~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (223)
                      +++|+++|+.|.+..|+.           +.++++..+.+..    .+.....+.   . +..+      +.+...|..+
T Consensus       157 ~l~sg~~y~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~~------~~~~~~~~~~  215 (290)
T TIGR00776       157 LLMSTIGYLVYVVVAKAF-----------GVDGLSVLLPQAIGMVIGGIIFNLGH---I-LAKP------LKKYAILLNI  215 (290)
T ss_pred             HHHHHHHHHHHHHHHHHc-----------CCCcceehhHHHHHHHHHHHHHHHHH---h-cccc------hHHHHHHHHH
Confidence            999999999999999975           2356655333322    222222221   0 0011      1122224333


Q ss_pred             HHHHHHHHHHHHHHH-HHHh-hcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchh----hHHHHHHHHHHHHHhh
Q 027434          145 TLSGFLGLAISFTSM-WFLH-QTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGVFFARA  214 (223)
Q Consensus       145 ~~~~~~~~~~~~~~~-~~~~-~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~----~G~~li~~g~~~~~~~  214 (223)
                      + .|++ ..+++..| ...+ +.++.++++..+.||+.+++++++++||+.+..|+    +|.++++.|+.+....
T Consensus       216 ~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       216 L-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             H-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            4 7888 57787776 5678 89999999999999999999999999999999999    9999999998876543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.71  E-value=1.5e-16  Score=127.27  Aligned_cols=204  Identities=18%  Similarity=0.192  Sum_probs=170.4

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc----ccchhhHHHHHHHHHHHH
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL----SFHAVGYAWQIINCFLTA   77 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~----~~~~~G~~~~l~a~~~~a   77 (223)
                      |-|+.|+|.|+..+.|+|..+-+++.+.++.+.|..+.+..+..++.+|.+..+..|.    .||..|..+.-.|.++.|
T Consensus       124 n~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA  203 (367)
T KOG1582|consen  124 NGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADA  203 (367)
T ss_pred             cCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999999999987775    577899999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCC--C-CccchHHHHHHHHHHHHHHH
Q 027434           78 SYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTP--L-LRLPSFWLVMTLSGFLGLAI  154 (223)
Q Consensus        78 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~  154 (223)
                      .--.++++.++.+       +.+..|+++|....+.|.+++....+||..+.+.+-  + +..........+.|.+|...
T Consensus       204 ~iGNvQEk~m~~~-------~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~  276 (367)
T KOG1582|consen  204 VIGNVQEKAMKMN-------PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVF  276 (367)
T ss_pred             HhhHHHHHHHhhC-------CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHH
Confidence            9988888887743       456789999999999999999999999987765431  1 21222223334445555322


Q ss_pred             HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434          155 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  215 (223)
Q Consensus       155 ~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  215 (223)
                      -   ...+|..++..++.+...++.+++++++++|.+++|.+...|..+++.|+++--+.+
T Consensus       277 V---LalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  277 V---LALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             H---HHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            2   235789999999999999999999999999999999999999999999999876655

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.70  E-value=1.2e-15  Score=124.11  Aligned_cols=189  Identities=18%  Similarity=0.301  Sum_probs=147.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc-----------------ccchh
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-----------------SFHAV   64 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~-----------------~~~~~   64 (223)
                      +.++++++.+++++++++..+++++++.+++|+|.+++||.++.+.++|+.+....+.                 +....
T Consensus        35 ~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (244)
T PF04142_consen   35 FVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLL  114 (244)
T ss_pred             HHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccccccchhHh
Confidence            5688999999999999999999999999999999999999999999999998643211                 11258


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccccc---CCCCccchHH
Q 027434           65 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSR---TPLLRLPSFW  141 (223)
Q Consensus        65 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  141 (223)
                      |.++.+.++++.+...++.+|.+|+.       +.+.+.....-+..+.+..++.... .+.+.+.+   +..+ ++..|
T Consensus       115 G~~~vl~~~~~S~~agVy~E~~lK~~-------~~s~~~~N~qL~~~gi~~~~~~~~~-~~~~~~~~~g~f~G~-~~~~~  185 (244)
T PF04142_consen  115 GLLAVLAAAFLSGFAGVYFEKLLKRS-------NVSLWIQNMQLYLFGILFNLLALLL-SDGSAISESGFFHGY-SWWVW  185 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc-------chhHHHHHHHHHHHHHHHHHHHHhc-ccccccccCCchhhc-chHHH
Confidence            99999999999999999999999963       2344444444445566666655433 33332222   2233 34457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHH
Q 027434          142 LVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFF  203 (223)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~l  203 (223)
                      ..+...++.|..+++    .+|+.+...-+....+..+.+.++++.+||.++|....+|..+
T Consensus       186 ~~i~~~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  186 IVIFLQAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             HHHHHHHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            777777777766654    5799999999999999999999999999999999999999765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.69  E-value=3.8e-15  Score=123.85  Aligned_cols=203  Identities=15%  Similarity=0.240  Sum_probs=162.4

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-----------ccccchhhHHHHHH
Q 027434            3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-----------DLSFHAVGYAWQII   71 (223)
Q Consensus         3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~-----------d~~~~~~G~~~~l~   71 (223)
                      .++.+.+.+++++..++..+.|+++..+++|||.+++||.++++.++|+.+....           +.+..+.|...++.
T Consensus       111 val~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~  190 (345)
T KOG2234|consen  111 VALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLV  190 (345)
T ss_pred             HHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHH
Confidence            4678899999999999999999999999999999999999999999999998621           12344799999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccccc---CCCCccchHHHHHHHHH
Q 027434           72 NCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSR---TPLLRLPSFWLVMTLSG  148 (223)
Q Consensus        72 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  148 (223)
                      ++++.+...++.+|.+|+.       +.+.|-...--+.++.++.++.++.. |.+.+..   +..+ +...|..++..+
T Consensus       191 ~c~~SgfAgvYfEkiLK~s-------~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~-s~~vw~vVl~~a  261 (345)
T KOG2234|consen  191 ACFLSGFAGVYFEKILKGS-------NVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGY-SSIVWLVVLLNA  261 (345)
T ss_pred             HHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccc-cHHHHHHHHHHh
Confidence            9999999999999999852       34444443333355666666665554 4333321   1223 445688888888


Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhh
Q 027434          149 FLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE  218 (223)
Q Consensus       149 ~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  218 (223)
                      +.|..++.    .+|+.+...-.....+..+.+.+.++.+||-++|....+|+.+++.++++|...|+++
T Consensus       262 ~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  262 VGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             ccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            88877764    4688888888888888899999999999999999999999999999999999777764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.68  E-value=2e-14  Score=116.61  Aligned_cols=200  Identities=14%  Similarity=0.225  Sum_probs=158.2

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 027434            4 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTL   83 (223)
Q Consensus         4 al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v~~   83 (223)
                      |.+.-.+-.+++-.+.-|++..+++.+++|||+|+.|++++.++.+||..-.+...+++|....+    +++|+.|...-
T Consensus        92 Avn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~sf~~Ygl~R  167 (293)
T COG2962          92 AVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----ALSFGLYGLLR  167 (293)
T ss_pred             ecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HHHHHHHHHHH
Confidence            44445556778888999999999999999999999999999999999999988887888766544    46889988865


Q ss_pred             HHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-HHH
Q 027434           84 RRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFL  162 (223)
Q Consensus        84 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  162 (223)
                      |+.           +++..+-...-.+.-.|..+.+.+..++..+....+   +...|..+..+|..+. +....| .+-
T Consensus       168 K~~-----------~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~---~~~~~~LLv~aG~vTa-vpL~lf~~aa  232 (293)
T COG2962         168 KKL-----------KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQN---ANSLWLLLVLAGLVTA-VPLLLFAAAA  232 (293)
T ss_pred             Hhc-----------CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcC---CchHHHHHHHhhHHHH-HHHHHHHHHH
Confidence            554           467777777777778888888877766644311111   1233666777777753 445555 567


Q ss_pred             hhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhcC
Q 027434          163 HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS  222 (223)
Q Consensus       163 ~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~  222 (223)
                      |+.+=.+.++..+.+|...-+++++++||+++..+...-+++..|..+|+.+.-++++++
T Consensus       233 ~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~  292 (293)
T COG2962         233 KRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKK  292 (293)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            899999999999999999999999999999999999999999999999988777655443

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.66  E-value=2e-16  Score=126.67  Aligned_cols=202  Identities=18%  Similarity=0.296  Sum_probs=155.0

Q ss_pred             cccccc-cchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc---ccc--------------cc-
Q 027434            2 SLSLKY-INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT---DLS--------------FH-   62 (223)
Q Consensus         2 ~~al~~-~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~---d~~--------------~~-   62 (223)
                      |+++++ +|+|...+.|+.+++.+++.++++.|+|.|.+|+.+++++.+|+++.+..   |..              +. 
T Consensus        82 N~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~  161 (330)
T KOG1583|consen   82 NYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFW  161 (330)
T ss_pred             cceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchH
Confidence            567776 89999999999999999999999999999999999999999999997532   211              11 


Q ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHH-HhccccccccC-----CC-
Q 027434           63 -AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVI-VFNEVDYLSRT-----PL-  134 (223)
Q Consensus        63 -~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~-  134 (223)
                       ..|..+..+|.+..|.-.+++++..++++       =++.|.++|++..++|.++...= +..++......     |. 
T Consensus       162 w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG-------Kh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~  234 (330)
T KOG1583|consen  162 WLIGIALLVFALLLSAYMGIYQETTYQKYG-------KHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLL  234 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceecccc
Confidence             26888888899999999999999988753       37889999999999999876421 11111111111     11 


Q ss_pred             -CccchHHHHHHHHHHHHHHHHHHHH---H-HHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHH
Q 027434          135 -LRLPSFWLVMTLSGFLGLAISFTSM---W-FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGV  209 (223)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~  209 (223)
                       ..-|..|.+++..++.    +|.|-   + .-..+++++++++.++++.++.+++++.|++++|++.|+|..+++.|.+
T Consensus       235 g~~vP~~~~yLl~n~L~----Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~  310 (330)
T KOG1583|consen  235 GFKVPSMWVYLLFNVLT----QYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTL  310 (330)
T ss_pred             CccccHHHHHHHHHHHH----HHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHH
Confidence             1123446555544433    44432   1 2246999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 027434          210 FFARA  214 (223)
Q Consensus       210 ~~~~~  214 (223)
                      +|+..
T Consensus       311 ~fa~~  315 (330)
T KOG1583|consen  311 LFANV  315 (330)
T ss_pred             HHHHH
Confidence            98753

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.66  E-value=4.9e-17  Score=129.72  Aligned_cols=201  Identities=13%  Similarity=0.084  Sum_probs=155.6

Q ss_pred             CcccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-----c------c---ccchhhH
Q 027434            1 MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-----D------L---SFHAVGY   66 (223)
Q Consensus         1 ~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~-----d------~---~~~~~G~   66 (223)
                      |++|++|+|.+-++++.+.+|.|+.++++.++|||.|+.+.++.++.+.|++++...     |      .   +-+..|-
T Consensus       114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt  193 (346)
T KOG4510|consen  114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGT  193 (346)
T ss_pred             HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCch
Confidence            678999999999999999999999999999999999999999999999999987432     1      1   1235787


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHH
Q 027434           67 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL  146 (223)
Q Consensus        67 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (223)
                      +.++.+++.-|--.++.|++-|         +.+....+-|..+.+++...+.+...++++-...   +.+   |..++.
T Consensus       194 ~aai~s~lf~asvyIilR~iGk---------~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~c---gkd---r~l~~~  258 (346)
T KOG4510|consen  194 VAAISSVLFGASVYIILRYIGK---------NAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHC---GKD---RWLFVN  258 (346)
T ss_pred             HHHHHhHhhhhhHHHHHHHhhc---------cccEEEEehHHHHHHHHHHHHHHhhccceecCcc---ccc---eEEEEE
Confidence            7788888887877888888855         3455555556666677777776666665543221   112   334566


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434          147 SGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM  216 (223)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  216 (223)
                      .|++|+.-+...-..+++-.+...++..+..-+.+.++-+++||+.+|++.|.|+++++.+..+....|-
T Consensus       259 lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw  328 (346)
T KOG4510|consen  259 LGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW  328 (346)
T ss_pred             ehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence            6888877776666666666666678889999999999999999999999999999998888877655443

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.62  E-value=3.2e-14  Score=112.92  Aligned_cols=196  Identities=16%  Similarity=0.072  Sum_probs=149.6

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc---cccchhhHHHHHHHHHHHHHH
Q 027434            3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTASY   79 (223)
Q Consensus         3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d---~~~~~~G~~~~l~a~~~~a~~   79 (223)
                      .|++.+|.+.+..+.++-|+.+..++.    +|  .++..-+.+++.|..+.....   .+.|..|..+++.+..||+.|
T Consensus        90 ~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~Y  163 (292)
T COG5006          90 LSIERIPLGIAVAIEFTGPLAVALLSS----RR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALY  163 (292)
T ss_pred             HHHHhccchhhhhhhhccHHHHHHHhc----cc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHH
Confidence            478899999999999999999877653    33  345566677888888765432   467889999999999999999


Q ss_pred             HHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHH-
Q 027434           80 SLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS-  158 (223)
Q Consensus        80 ~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  158 (223)
                      .+..||.-+         ..+..+.+.+....+....+++.....+       +...++.....-+..+++++.+=|+. 
T Consensus       164 Iv~G~r~g~---------~~~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~p~ll~laLgvavlSSalPYsLE  227 (292)
T COG5006         164 IVLGQRAGR---------AEHGTAGVAVGMLVAALIVLPIGAAQAG-------PALFSPSLLPLALGVAVLSSALPYSLE  227 (292)
T ss_pred             HHHcchhcc---------cCCCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcChHHHHHHHHHHHHhcccchHHH
Confidence            999998743         2344444555555566666655432211       11234445566778899999998988 


Q ss_pred             HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhh
Q 027434          159 MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS  220 (223)
Q Consensus       159 ~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~  220 (223)
                      ..++|+.++-+.++..++||..+.+.|++++||.+|..||.|++.++.++.-.+...+|+.+
T Consensus       228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~~  289 (292)
T COG5006         228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPAV  289 (292)
T ss_pred             HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCCC
Confidence            46799999999999999999999999999999999999999999999887755554444443

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.61  E-value=1.8e-14  Score=115.90  Aligned_cols=206  Identities=17%  Similarity=0.170  Sum_probs=158.5

Q ss_pred             CcccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc----------cccchhhHHHHH
Q 027434            1 MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD----------LSFHAVGYAWQI   70 (223)
Q Consensus         1 ~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d----------~~~~~~G~~~~l   70 (223)
                      |+.++++++++.+|++|....+|+.+++..+++++++.++|+++.....|++++...|          .+....|+++.+
T Consensus       103 m~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIi  182 (372)
T KOG3912|consen  103 MYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLII  182 (372)
T ss_pred             HHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHH
Confidence            7889999999999999999999999999999999999999999999999999875443          233468999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHh-----ccccccccCCCCccchH-----
Q 027434           71 INCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF-----NEVDYLSRTPLLRLPSF-----  140 (223)
Q Consensus        71 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----  140 (223)
                      ++-+.-|+++++.+|.+++       .+++|.+.+.|.-+++...+..+....     ++..+......+.|+..     
T Consensus       183 iaqiivaiQ~v~Eek~l~~-------~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~  255 (372)
T KOG3912|consen  183 IAQIIVAIQMVCEEKQLKK-------SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAAL  255 (372)
T ss_pred             HHHHHHHHHHHHHHhhhhh-------ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHh
Confidence            9999999999999999885       367888888887777765554443321     21111111110111100     


Q ss_pred             ----HHHHHHHHHHH--HHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          141 ----WLVMTLSGFLG--LAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       141 ----~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                          -.++.+.|+..  ...++......|..|+++-.+...++..+-.++++....|.+...|+.|-++-+.|.++|+.
T Consensus       256 ~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~  334 (372)
T KOG3912|consen  256 QESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ  334 (372)
T ss_pred             cCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                12333334333  22355555566889999999999999999999999999999999999999999999999975

>TIGR00803 nst UDP-galactose transporter

Probab=99.49  E-value=4.3e-13  Score=107.87  Aligned_cols=188  Identities=18%  Similarity=0.193  Sum_probs=128.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc---------------------------c
Q 027434            8 INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------------------------S   60 (223)
Q Consensus         8 ~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~---------------------------~   60 (223)
                      +++|..+..++..++++++.+..+.+||.+..|+++..+...|+......|.                           +
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g   81 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG   81 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence            6889999999999999999999999999999999999999999986433221                           1


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhc----cccccccCC--C
Q 027434           61 FHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFN----EVDYLSRTP--L  134 (223)
Q Consensus        61 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~  134 (223)
                      ..+.|....+.++.+.+.-.++.++..|+       .     +..+|.+....+...+.....+    +.+...+.+  .
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~-------~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKD-------G-----DTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFI  149 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccC-------C-----CCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCccc
Confidence            22455555666666666667777776442       1     1124444444444433321111    111111111  1


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHH
Q 027434          135 LRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF  211 (223)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~  211 (223)
                      ..+...|..++..++.    +.+..+++|+.++++.++...++++.+.++++++|||+++..++.|+.+++.|+++|
T Consensus       150 ~~~~~~~~~~~~~a~~----~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       150 GYPTAVWIVGLLNVGG----GLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             CCchHHHHHHHHHHhc----CceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            1122234333333333    333446899999999999999999999999999999999999999999999988765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.29  E-value=3.2e-11  Score=86.33  Aligned_cols=134  Identities=12%  Similarity=0.166  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHH
Q 027434           66 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT  145 (223)
Q Consensus        66 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (223)
                      .+|++++++.+++-.++.|--++         +.|+.......+......+.......|.++...+.    ++..|..+.
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~---------~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~----~~k~~lfli   71 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLE---------GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEI----GPKSWLFLI   71 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc---------ccCccHHHHHHHHHHHHHHHHHHHhcCceeccccc----Ccceehhhh
Confidence            57899999999999999887765         45676666677777777777777777877654332    233477889


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434          146 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  212 (223)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~  212 (223)
                      ++|+.+..-.++.|+++|.-.+.....+....++.++++++.++||++|..+|+|++++.+|..+.+
T Consensus        72 lSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          72 LSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            9998877777777789998877778888888999999999999999999999999999999987654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.29  E-value=3.1e-11  Score=87.57  Aligned_cols=124  Identities=19%  Similarity=0.330  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHH
Q 027434           74 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA  153 (223)
Q Consensus        74 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (223)
                      ++||.+.+..|+..+         +.++.....+....+.+ ..+.....+..+ .   ... +...+....+.+.++..
T Consensus         1 ~~~a~~~~~~k~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~   65 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLK---------KISPLSITFWRFLIAGI-LLILLLILGRKP-F---KNL-SPRQWLWLLFLGLLGTA   65 (126)
T ss_pred             ceeeeHHHHHHHHhc---------cCCHHHHHHHHHHHHHH-HHHHHHhhcccc-c---cCC-ChhhhhhhhHhhcccee
Confidence            367889999999876         47889999998888887 555555544332 1   111 11224456666777655


Q ss_pred             HHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434          154 ISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  212 (223)
Q Consensus       154 ~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~  212 (223)
                      .++..+ +++|+.++...+...+++|+.+.++++++++|+++..+++|+++++.|+.+..
T Consensus        66 ~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   66 LAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            555554 78999999999999999999999999999999999999999999999988754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.21  E-value=2.8e-12  Score=102.11  Aligned_cols=196  Identities=10%  Similarity=0.068  Sum_probs=146.3

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--------ccchhhHHHHHHHHH
Q 027434            3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQIINCF   74 (223)
Q Consensus         3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~--------~~~~~G~~~~l~a~~   74 (223)
                      +|.||++....+.+-+-..+.+.+++++++|.|.++.++.|+++++.|+++....|.        +++..|++++++.|-
T Consensus        97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GAT  176 (336)
T KOG2766|consen   97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGAT  176 (336)
T ss_pred             eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecce
Confidence            588999999999999999999999999999999999999999999999998765542        344689999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHH-HHHHH
Q 027434           75 LTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSG-FLGLA  153 (223)
Q Consensus        75 ~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  153 (223)
                      +||..++..+.+.|         +.+..+.+..-.+++..+..+- ++++..+ ... -+|.    |-...+.+ ..+..
T Consensus       177 lYaVSNv~EEflvk---------n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~-~~t-l~w~----~~i~~yl~f~L~MF  240 (336)
T KOG2766|consen  177 LYAVSNVSEEFLVK---------NADRVELMGFLGLFGAIISAIQ-FIFERHH-VST-LHWD----SAIFLYLRFALTMF  240 (336)
T ss_pred             eeeeccccHHHHHh---------cCcHHHHHHHHHHHHHHHHHHH-Hhhhccc-eee-Eeeh----HHHHHHHHHHHHHH
Confidence            99999999999877         4678888877777777777666 3332221 110 1121    21222222 11122


Q ss_pred             HHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434          154 ISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM  216 (223)
Q Consensus       154 ~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  216 (223)
                      .-|+.. ..+|..|++..++.......-+++.  ..||-+.+|...+.-+.+..|.++|+-+++
T Consensus       241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~  302 (336)
T KOG2766|consen  241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK  302 (336)
T ss_pred             HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence            223332 3458899998887777777777776  678889999999999999999999954433

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.05  E-value=1.2e-09  Score=84.22  Aligned_cols=201  Identities=15%  Similarity=0.113  Sum_probs=144.4

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--ccchhhHHHHHHHHHHHHHHH
Q 027434            3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--SFHAVGYAWQIINCFLTASYS   80 (223)
Q Consensus         3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~--~~~~~G~~~~l~a~~~~a~~~   80 (223)
                      .+++.++.+.++.+.++--.|+.+++++.+|+|+...++++.++++.|+++..+.|.  ...+.|...+++|+...|+|.
T Consensus        72 ~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~~aAlYK  151 (290)
T KOG4314|consen   72 LALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAFMAALYK  151 (290)
T ss_pred             HHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999886654  345899999999999999999


Q ss_pred             HHHHHHhhhhhhhhccCCCCch----h-HHHHHh-hhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHH
Q 027434           81 LTLRRVMDTAKQVTKSGNLNEF----S-MVLLNN-SLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI  154 (223)
Q Consensus        81 v~~k~~~~~~~~~~~~~~~~~~----~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (223)
                      +..|+...+.       ++...    . +-+++- ..+.|.++....-.|++++. ....      |.-+--.+......
T Consensus       152 V~FK~~iGnA-------n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsF-A~~P------WG~l~G~A~L~lAF  217 (290)
T KOG4314|consen  152 VLFKMFIGNA-------NFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSF-AAAP------WGCLCGAAGLSLAF  217 (290)
T ss_pred             HHHHHHhccC-------cchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHH-hhCC------chhhhhHHHHHHHH
Confidence            9999998752       12211    1 112221 22444443332222334322 1111      33222223333444


Q ss_pred             HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          155 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       155 ~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      ++.....+..+.|...|+-..+..........++-+-.++.....|..++..|.++.-..+.|
T Consensus       218 N~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~  280 (290)
T KOG4314|consen  218 NFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK  280 (290)
T ss_pred             hhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence            444434567788999999888888888888988888888999999999999998876554443

>TIGR00688 rarD rarD protein

Probab=99.05  E-value=9.3e-09  Score=84.36  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=104.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccc-ccCCCCccchHHH
Q 027434           64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-SRTPLLRLPSFWL  142 (223)
Q Consensus        64 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  142 (223)
                      .|.++.++++++|+...+..|.. .         ++++.++.++....+.+.+.+.....++.... .+.........+.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~---------~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-K---------PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLIL   71 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-c---------cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHH
Confidence            48899999999999999999973 3         47899999999998887776655444432211 0111111112233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434          143 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  212 (223)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~  212 (223)
                      ...+.|++......+.+++++++++.++++..+..|+.+.+++.++++|+++..+++|.++.+.|+.+..
T Consensus        72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            4556666644444444578999999999999999999999999999999999999999999999988654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.01  E-value=1.8e-08  Score=84.49  Aligned_cols=139  Identities=10%  Similarity=0.099  Sum_probs=103.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchH
Q 027434           61 FHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSF  140 (223)
Q Consensus        61 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (223)
                      ....|.++.++++++|+...+..|.. .         ++++.++.++....+.+.+.+.....++.....+.  ..++..
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~---------~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~   72 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y---------YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTPQK   72 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c---------CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCHHH
Confidence            44589999999999999999999764 3         47899999999998887776655444332221110  001121


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434          141 WLVMTLSGFLGLAISFTS-MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  212 (223)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~  212 (223)
                      +.... .+.++...++.. +++++++++..+++..+..|+.+.++++++++|+++..+++|+++.++|+.+..
T Consensus        73 ~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         73 IFMLA-VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            22222 344444444444 578999999999999999999999999999999999999999999999988754

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.01  E-value=1.2e-08  Score=84.91  Aligned_cols=133  Identities=10%  Similarity=0.062  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHH
Q 027434           66 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT  145 (223)
Q Consensus        66 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (223)
                      +++.+++++++|...+..||..++         .++  ...+.+....+.+.+........ ..++.+   +...|....
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~---------~~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~---~~~~~~~~~   67 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK---------EPD--FLWWALLAHSVLLTPYGLWYLAQ-VGWSRL---PATFWLLLA   67 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc---------hhH--HHHHHHHHHHHHHHHHHHHhccc-CCCCCc---chhhHHHHH
Confidence            567899999999999999987652         122  23454455555555544332111 111111   122244455


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          146 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      ..+.......++.+.+.++.++...+.+.+..|+.+.+++++++||+++..+++|.++++.|+.+...
T Consensus        68 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        68 ISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            55555555555656789999999999999999999999999999999999999999999999987654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.80  E-value=2.3e-07  Score=79.77  Aligned_cols=138  Identities=17%  Similarity=0.152  Sum_probs=106.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHH
Q 027434           64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV  143 (223)
Q Consensus        64 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (223)
                      .-+..++..-++|+.+.++.|..++.        .+++....+|....+.+.+.++....+.....   +.. +...|..
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~~--------G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~---~~~-~~~~~~~   80 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATSK--------GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSL---PPL-SVSILSK   80 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHC--------CCCccHHHHHHHHHHHHHHHHHHHHHHHhccc---Ccc-hHHHHHH
Confidence            34556777889999999999999873        68888999999888888888776654321111   110 1122556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHh------cCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          144 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILL------FKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~------~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      +.+.|++++......+..+++++|..++++.+..|+.+.++++++      ++|+++..+++|.++.++|+.+...
T Consensus        81 l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         81 IGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            677788874333344578999999999999999999999999999      6999999999999999999887543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.65  E-value=4e-06  Score=68.71  Aligned_cols=173  Identities=15%  Similarity=0.146  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHhCcccChhHHH----HHHHHHHhhhhhcccccc--------cchhhHHHHHHHHHHHHHHHHHHHH
Q 027434           18 NVTNVITAVGEMYLFNKRHDNRVWA----ALFLMIISAISGGITDLS--------FHAVGYAWQIINCFLTASYSLTLRR   85 (223)
Q Consensus        18 ~~~pi~~~i~~~~~~~e~~s~~~~~----~l~l~~~Gv~~~~~~d~~--------~~~~G~~~~l~a~~~~a~~~v~~k~   85 (223)
                      ..+-+.+.+.++++++|+.+.+++.    +++++++|+.+.+..|.+        ....|....+.+.+.|..|....|.
T Consensus        80 g~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen   80 GLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            3455668889999999988877765    889999999998765432        1246999999999999999998776


Q ss_pred             HhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027434           86 VMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQT  165 (223)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      .           +.++++..+=++.--.....++....  .+...+      ...|.. ++.|++=..-+.+.+...++.
T Consensus       160 ~-----------~~~~~~~~lPqaiGm~i~a~i~~~~~--~~~~~~------k~~~~n-il~G~~w~ignl~~~is~~~~  219 (269)
T PF06800_consen  160 F-----------HVSGWSAFLPQAIGMLIGAFIFNLFS--KKPFFE------KKSWKN-ILTGLIWGIGNLFYLISAQKN  219 (269)
T ss_pred             c-----------CCChhHhHHHHHHHHHHHHHHHhhcc--cccccc------cchHHh-hHHHHHHHHHHHHHHHhHHhc
Confidence            4           46787777654433322233333222  111111      122333 333443333345545677899


Q ss_pred             chhHHHHHhhhhhHHHHHHHHHhcCCcCCcch----hhHHHHHHHHHHH
Q 027434          166 GATTYSLVGSLNKIPLSVAGILLFKVPTSLEN----SASIFFGLLAGVF  210 (223)
Q Consensus       166 s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~----~~G~~li~~g~~~  210 (223)
                      +..+.=.+..+..+++++.|+++++|+=+-.+    ++|.++++.|..+
T Consensus       220 G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  220 GVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             cchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            99998899999999999999999999988654    4677777777653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.65  E-value=1.5e-06  Score=63.91  Aligned_cols=122  Identities=21%  Similarity=0.232  Sum_probs=85.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHH
Q 027434           64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV  143 (223)
Q Consensus        64 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (223)
                      .|+++.+.+.++.+.-++..|+-.++.+      +.+.... .      .  ..... .             .++   ..
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g------~~~~~~~-~------~--~~~~~-~-------------~~p---~~   49 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLP------LLSHAWD-F------I--AALLA-F-------------GLA---LR   49 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCC------CccchhH-H------H--HHHHH-H-------------hcc---HH
Confidence            4889999999999999999998766421      1111000 0      0  00000 0             011   12


Q ss_pred             HHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHH--hcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          144 MTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGIL--LFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       144 ~~~~~~~~~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~--~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      .++.|+.+...++..+ +++|+.+...+....+..++...+.++.  +|||++|+.+++|++++++|+++.++.++|
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            3455777777777776 6789999999988888888777777775  899999999999999999999998765443

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.62  E-value=6.2e-08  Score=69.64  Aligned_cols=59  Identities=27%  Similarity=0.447  Sum_probs=54.2

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccccc
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF   61 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~   61 (223)
                      +.|+++.| +....+.++.|+++.+++.+++|||++++++.++.++++|+.+..++|.+.
T Consensus        53 ~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~  111 (113)
T PF13536_consen   53 FYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLTG  111 (113)
T ss_pred             HHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhccc
Confidence            46789999 688899999999999999999999999999999999999999998887643

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.56  E-value=1.9e-06  Score=70.47  Aligned_cols=141  Identities=16%  Similarity=0.192  Sum_probs=113.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHH
Q 027434           62 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW  141 (223)
Q Consensus        62 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (223)
                      ...|.++++.|-+.|+.-..+.|-..          +.++.|+..+.-+.+.|++++......++.+..+  ...+|..+
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll~----------~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~   72 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLLE----------PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTL   72 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHc----------cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHH
Confidence            35799999999999999999988873          4688899999889999999988887777766544  22334445


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434          142 LVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  215 (223)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  215 (223)
                      ..+.+++.. ...+...| |+..+-..+.+|.--+++|.+.+++|.++++|+++..|++..++..+|+..-....
T Consensus        73 ~~~~l~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          73 LMLALTALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHHHHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            555554444 33466666 78888999999999999999999999999999999999999999999988765543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.56  E-value=1.2e-06  Score=62.95  Aligned_cols=105  Identities=21%  Similarity=0.311  Sum_probs=73.9

Q ss_pred             hhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHH
Q 027434          109 NSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGIL  187 (223)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~  187 (223)
                      ...+.+.+.+.....++..+..+.... .+  |...+..|.++...++..+ ++.++.++ .++...++.|+++.++|.+
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    5 YLFSVLFLLIILLIRGRLRDLFRALRR-KP--WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHh-Cc--HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence            344566666655555554333221111 11  3345555666665556665 67888885 7778899999999999999


Q ss_pred             hcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          188 LFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       188 ~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      +++|+++..++.|.++++.|+.+......+
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999988765543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.42  E-value=1.8e-05  Score=66.26  Aligned_cols=130  Identities=16%  Similarity=0.088  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHH
Q 027434           66 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT  145 (223)
Q Consensus        66 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (223)
                      .+..+...+.|+...+..|...+         +.++.+...+....+...+.+.....+...     +   +...|....
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~---------~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-----~---~~~~~~~~~   72 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVE---------SWPPLMMAGVRFLIAGILLLAFLLLRGHPL-----P---TLRQWLNAA   72 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-----C---cHHHHHHHH
Confidence            34566778899999999997654         578999999998888877776654432211     1   111244555


Q ss_pred             HHHHHHHHHHHHH-HHHH-hhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          146 LSGFLGLAISFTS-MWFL-HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       146 ~~~~~~~~~~~~~-~~~~-~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      ..|++.....+.. +... +++++..+++..++.|+.+.+++.+ ++|+++..+++|.++.++|+.+...
T Consensus        73 ~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         73 LIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            6666654433333 4566 8899999999999999999999985 7999999999999999999887754

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.39  E-value=1.1e-06  Score=73.80  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=49.9

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   55 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~   55 (223)
                      +.|+.+.|++..+-+.....++.++++.+++|||++++++.|..+++.|..+..
T Consensus        68 ~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   68 FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            357888999999999999999999999999999999999999999999998754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.33  E-value=9e-06  Score=66.50  Aligned_cols=104  Identities=15%  Similarity=0.094  Sum_probs=76.6

Q ss_pred             CCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHH-HHHHhhcchhHHHHHhhh
Q 027434           98 NLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS-MWFLHQTGATTYSLVGSL  176 (223)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~si~~~l  176 (223)
                      ..++.+..++....+.+.+.+.....   .      ..  .. |......+.++....+.. +.+++++++...+++..+
T Consensus        15 ~~~~~~~~~~r~~~~~l~l~~~~~~~---~------~~--~~-~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~   82 (260)
T TIGR00950        15 QVPLYFAVFRRLIFALLLLLPLLRRR---P------PL--KR-LLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYL   82 (260)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhc---c------CH--hH-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhh
Confidence            45778877777766666655543221   0      11  11 334445555555454444 478999999999999999


Q ss_pred             hhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          177 NKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       177 ~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      +|+.+.+++.++++|+++..+++|+.+.+.|+.+...
T Consensus        83 ~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        83 APLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             hHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            9999999999999999999999999999999887654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.32  E-value=8.4e-07  Score=64.00  Aligned_cols=53  Identities=25%  Similarity=0.399  Sum_probs=50.9

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG   54 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~   54 (223)
                      ++++++++++..+.+.++.|+++.+++++++|||++++++.++.++++|+++.
T Consensus        72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.31  E-value=5.3e-05  Score=65.14  Aligned_cols=134  Identities=13%  Similarity=0.076  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC-chhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHH
Q 027434           67 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLN-EFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT  145 (223)
Q Consensus        67 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (223)
                      .+.+.--.+...+.+..|..++         ..+ |+.+..++.+.+...+.++. ..+ .....+.+.  ....|-.++
T Consensus        52 ~~~~~wy~~s~~~~~~nK~vl~---------~~~~P~~l~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~--~~~~~~~ll  118 (350)
T PTZ00343         52 LLFLTWYALNVLYVVDNKLALN---------MLPLPWTISSLQLFVGWLFALLYW-ATG-FRKIPRIKS--LKLFLKNFL  118 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------hCChhHHHHHHHHHHHHHHHHHHH-HhC-CCCCCCCCC--HHHHHHHHH
Confidence            3444444444556777888776         356 88888888777766544432 222 111111111  122456777


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          146 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      ..|+++....+..+.+++++++..++++-.++|+++.+++.++++|+++..++.|.++++.|+.+...
T Consensus       119 p~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        119 PQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            77888876655556788999999999999999999999999999999999999999999999987653

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.30  E-value=3.7e-05  Score=64.48  Aligned_cols=130  Identities=15%  Similarity=0.062  Sum_probs=90.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHH
Q 027434           64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV  143 (223)
Q Consensus        64 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (223)
                      .+++.+++++++|+......|...+         +++|.....+....+.+++.+..    ..... +  .. +   +..
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~---------~~~P~~~~~~R~~~a~l~l~~~~----~~~~~-~--~~-~---~~~   63 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSE---------SLGPVGGAAMIYSVSGLLLLLTV----GFPRL-R--QF-P---KRY   63 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHHHHHHHc----ccccc-c--cc-c---HHH
Confidence            4677899999999999999998765         57898888887777766665431    11111 1  00 1   122


Q ss_pred             HHHHHHHHHHHHHHHHHHH----hhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          144 MTLSGFLGLAISFTSMWFL----HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~----~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      .+..++.........+...    +..++..++++.++.|+.+.+++.++++|+++..+++|+++.++|+.+...
T Consensus        64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~  137 (295)
T PRK11689         64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG  137 (295)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence            2332332222222223333    346788889999999999999999999999999999999999999887643

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.23  E-value=8.1e-05  Score=62.51  Aligned_cols=124  Identities=12%  Similarity=0.044  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHH
Q 027434           67 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL  146 (223)
Q Consensus        67 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (223)
                      ++.++++++|+...+..|...+         ++++....++....+...+.+..  ..+     +   . +   +.....
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~---------~~~p~~~~~~R~~~a~~~l~~~~--~~~-----~---~-~---~~~~~~   63 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLH---------NMPPLMLAGLRFMLVAFPAIFFV--ARP-----K---V-P---LNLLLG   63 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHHh--cCC-----C---C-c---hHHHHH
Confidence            4578899999999999998754         57899999888777655443322  111     1   0 0   112222


Q ss_pred             HHHHHHHHHHHH-HHHHhh-cchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          147 SGFLGLAISFTS-MWFLHQ-TGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       147 ~~~~~~~~~~~~-~~~~~~-~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      .|.......+.. +...++ .++...+++.++.|+.+.++++++++|+++..+++|.++.++|+.+...
T Consensus        64 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         64 YGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            344333333322 345666 5778889999999999999999999999999999999999999887653

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.21  E-value=8.6e-05  Score=62.35  Aligned_cols=124  Identities=6%  Similarity=-0.037  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHH
Q 027434           75 LTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI  154 (223)
Q Consensus        75 ~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (223)
                      +...++++.|..+++        -..|..+.......+.....+. .-.+..+.    +.. +...|..++..|++....
T Consensus        13 ~~~~~~~~NK~~l~~--------~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~-~~~~~~~~~~~g~~~~~~   78 (302)
T TIGR00817        13 LNVYFNIYNKKLLNV--------FPYPYFKTLISLAVGSLYCLLS-WSSGLPKR----LKI-SSALLKLLLPVAIVHTIG   78 (302)
T ss_pred             HHHHHHHHHHHHHhh--------CChhHHHHHHHHHHHHHHHHHH-HHhCCCCC----CCC-CHHHHHHHHHHHHHHHHH
Confidence            334455677777652        1246666666655554444332 11111111    111 122355667777776444


Q ss_pred             HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434          155 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  212 (223)
Q Consensus       155 ~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~  212 (223)
                      ....+.+++++++..+++..+..|+++.+++.++++|+++..++.|.+++++|+.+..
T Consensus        79 ~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        79 HVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            4444578999999999999999999999999999999999999999999999987653

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.17  E-value=3.2e-06  Score=60.54  Aligned_cols=54  Identities=17%  Similarity=0.286  Sum_probs=50.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   55 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~   55 (223)
                      ..+++++|++.+..+-++.++++.+.+++++|||+++++++|+.++++|+++..
T Consensus        55 ~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         55 LLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            457899999999999999999999999999999999999999999999998764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.13  E-value=2.6e-05  Score=55.82  Aligned_cols=62  Identities=18%  Similarity=0.169  Sum_probs=52.6

Q ss_pred             HHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          152 LAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       152 ~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      ...++..+ .++|+.+...+....++.++.+.++|+++|||++|..+++|++++++|+.....
T Consensus        47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            33344443 578999999888888899999999999999999999999999999999887653

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.05  E-value=0.00012  Score=61.27  Aligned_cols=134  Identities=11%  Similarity=0.100  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHH
Q 027434           65 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM  144 (223)
Q Consensus        65 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (223)
                      |.+++++++++|+...+..|+..          +.++.+..  ....+............++.       ..++..+..-
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~----------g~~~~~~~--~~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~g   62 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG----------GGPYSQTL--GTTFGALILSIAIAIFVLPE-------FWALSIFLVG   62 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC----------CCHHHHHH--HHHHHHHHHHHHHHHHhCCc-------ccccHHHHHH
Confidence            67889999999999999998762          22333333  12223333333322222211       1112333333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHhh-hhhHHHHHHHHHhcCCcCCcch----hhHHHHHHHHHHHHHhhhhh
Q 027434          145 TLSGFLGLAISFTSMWFLHQTGATTYSLVGS-LNKIPLSVAGILLFKVPTSLEN----SASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~-l~~v~~~~~~~~~~~e~~~~~~----~~G~~li~~g~~~~~~~~~~  217 (223)
                      ++.|..=..-+++.+.++|+++...+-...+ +.++..++++.++|+|+.+..+    ++|.++++.|+++....+++
T Consensus        63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~  140 (290)
T TIGR00776        63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDK  140 (290)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccc
Confidence            3434432222455557899988888866666 7788999999999999999999    99999999999987665433

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.92  E-value=0.00039  Score=58.53  Aligned_cols=129  Identities=16%  Similarity=0.190  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccCCC-CchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHH
Q 027434           75 LTASYSLTLRRVMDTAKQVTKSGNL-NEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA  153 (223)
Q Consensus        75 ~~a~~~v~~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (223)
                      ++..+.+.+++..++..      .. .+.-+.+.+.........+...... .+...+     .+  +......+++-..
T Consensus        11 ~~~~~g~~qE~i~~~~~------~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~~~~~~-----~~--~~~~~~~~~~~~~   76 (303)
T PF08449_consen   11 GCCSYGILQEKIMTTPY------GSPFPLFLTFVQFAFNALFSFILLSLFK-FPKSRK-----IP--LKKYAILSFLFFL   76 (303)
T ss_pred             HHHHHHHHHHHHHcCCC------CCcccHHHHHHHHHHHHHHHHHHHHhcc-ccCCCc-----Ch--HHHHHHHHHHHHH
Confidence            34456788888877421      22 3555566665555554444433322 011001     11  2223333444444


Q ss_pred             HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          154 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       154 ~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      -......++++++..+..+.-+.+++.+++++.++++++.+..++.+.+++.+|+.++...+.+
T Consensus        77 ~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~  140 (303)
T PF08449_consen   77 ASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS  140 (303)
T ss_pred             HHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence            4556667899999999999999999999999999999999999999999999999988775544

; GO: 0055085 transmembrane transport

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.89  E-value=0.00093  Score=54.97  Aligned_cols=140  Identities=22%  Similarity=0.215  Sum_probs=90.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHH
Q 027434           63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL  142 (223)
Q Consensus        63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (223)
                      ..+....+..++.++......|+..++        ..+......+....+.....+..  ..+.....  +.. .+  +.
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~-~~--~~   70 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVES--------LDPFLFAAALRFLIAALLLLPLL--LLEPRGLR--PAL-RP--WL   70 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCChHHHHHHHHHHHHHHHHHHH--Hhhccccc--ccc-cc--hH
Confidence            356677778888888888888877542        23444444444444444422111  11110001  111 11  12


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHhhcchhHHHHHhhhhhHHHHHHHH-HhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          143 VMTLSGFLGLAISFTS-MWFLHQTGATTYSLVGSLNKIPLSVAGI-LLFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       143 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~si~~~l~~v~~~~~~~-~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      ...+.+.+........ +.+++++++..++...+..|+.+.+++. ++++|+++..++.|..+.+.|+.+.......
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            3344455554444444 4679999999999999999999999996 6779999999999999999999987765543

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.72  E-value=0.0027  Score=47.24  Aligned_cols=130  Identities=15%  Similarity=0.213  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHH
Q 027434           66 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT  145 (223)
Q Consensus        66 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (223)
                      .++++.+..+.+++.....++.++.        -+++.-.+.+...+...+.+...+.++. +..+   ..+...|.  .
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~--------gs~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~---~~~~p~w~--~   68 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKAL--------GSPLVASFISFGVGFILLLIILLITGRP-SLAS---LSSVPWWA--Y   68 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHHHHhccc-ccch---hccCChHH--h
Confidence            5678888888999988888876631        1488888888888888888777776654 2221   11111233  3


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHhhh-hhHHHHHHHHH-hc---CCcCCcchhhHHHHHHHHHH
Q 027434          146 LSGFLGLAISFTSMWFLHQTGATTYSLVGSL-NKIPLSVAGIL-LF---KVPTSLENSASIFFGLLAGV  209 (223)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l-~~v~~~~~~~~-~~---~e~~~~~~~~G~~li~~g~~  209 (223)
                      ..|++|...-++....+++.++..+...... +-+.+.++..+ +|   .++++....+|..+.++|+.
T Consensus        69 lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   69 LGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            3788988887777778899998888776666 44555566664 34   37889999999999999975

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.62  E-value=0.0004  Score=50.26  Aligned_cols=65  Identities=15%  Similarity=0.254  Sum_probs=49.0

Q ss_pred             HHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434          152 LAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM  216 (223)
Q Consensus       152 ~~~~~~~~-~~~~~~s~-~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  216 (223)
                      ...++..+ .++|+.+. .-+++..-+..+.+.+.|+++|||++|+.+++|+++++.|+...+..++
T Consensus        40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            33344443 46676443 3455656677888999999999999999999999999999998876443

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.60  E-value=0.00011  Score=53.95  Aligned_cols=57  Identities=11%  Similarity=0.168  Sum_probs=50.9

Q ss_pred             CcccccccchhHHHHHHHHHHHHHHHHHHH--HhCcccChhHHHHHHHHHHhhhhhccc
Q 027434            1 MSLSLKYINVAMVTVLKNVTNVITAVGEMY--LFNKRHDNRVWAALFLMIISAISGGIT   57 (223)
Q Consensus         1 ~~~al~~~~~~~~~~l~~~~pi~~~i~~~~--~~~e~~s~~~~~~l~l~~~Gv~~~~~~   57 (223)
                      |+++++..|++.+.-+.+..+.++.+.++.  ++||++|+++++|+.++++|+++....
T Consensus        65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            467889999999999999998888888885  899999999999999999999997654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.58  E-value=0.00051  Score=48.98  Aligned_cols=65  Identities=11%  Similarity=0.059  Sum_probs=49.7

Q ss_pred             HHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434          152 LAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM  216 (223)
Q Consensus       152 ~~~~~~~~-~~~~~~s~-~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  216 (223)
                      ...++..+ .++|+.+. ..+++..-+..+.+.+.|+++|||++|+.+++|+++++.|+...+..++
T Consensus        40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            33344443 46676543 3456666678889999999999999999999999999999998876543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.52  E-value=0.0019  Score=54.98  Aligned_cols=70  Identities=11%  Similarity=0.115  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          144 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      .++.+++=..-+|....+.++++.+...++.+...+.+.+++++++++++++.+++|+.+++.|+.+...
T Consensus        82 y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~  151 (334)
T PF06027_consen   82 YFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV  151 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence            3444777777788888899999999999999999999999999999999999999999999999886544

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.45  E-value=3.9e-05  Score=55.40  Aligned_cols=53  Identities=21%  Similarity=0.317  Sum_probs=45.6

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434            3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   55 (223)
Q Consensus         3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~   55 (223)
                      .|+|.-++|...=+-.++|+++.+++++++|||+|..+++|++++.+|+++..
T Consensus        86 ~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          86 RALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            45556666666667788999999999999999999999999999999998764

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.40  E-value=0.0082  Score=50.21  Aligned_cols=105  Identities=7%  Similarity=-0.032  Sum_probs=74.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHH
Q 027434           63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL  142 (223)
Q Consensus        63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (223)
                      ..|..+.++++++++......|...+         +.++.+..++.+..+.+.+.+.......     +.+    ...|.
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~---------~~~~~~~~~~R~~~a~l~l~~~~~~~~~-----~~~----~~~~~   72 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFP---------LVGAPGVTALRLALGTLILIAIFKPWRL-----RFA----KEQRL   72 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHH---------HcCHHHHHHHHHHHHHHHHHHHHhHHhc-----cCC----HHHHH
Confidence            57899999999999999999998765         3788999999988887777654321111     111    11122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHH
Q 027434          143 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAG  185 (223)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~  185 (223)
                      ..+..|.+.....+..+++++++++..+++.....|+...+++
T Consensus        73 ~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~  115 (293)
T PRK10532         73 PLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS  115 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence            3334455444445555678899999999999999999988776

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.0006  Score=56.82  Aligned_cols=56  Identities=13%  Similarity=0.177  Sum_probs=50.8

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027434            2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT   57 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~   57 (223)
                      +.|.-+.|.+..+-+-+++.+..++++..++|||.+....+|+.++++|..+...+
T Consensus        82 FaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   82 FAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            35677889999999999999999999999999999999999999999999987543

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.28  E-value=0.001  Score=54.32  Aligned_cols=75  Identities=12%  Similarity=0.096  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          143 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      ...+.+++=..-+...|.++++.+|.+..+....|.+.+.+++.++++.+++..||.+.++.+.|+.+....+..
T Consensus        19 ~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   19 KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            344444554555677778899999999999999999999999999999999999999999999999987654443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.0032  Score=44.27  Aligned_cols=60  Identities=18%  Similarity=0.220  Sum_probs=49.1

Q ss_pred             HHHHH-HHHhhcc-hhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhh
Q 027434          155 SFTSM-WFLHQTG-ATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  214 (223)
Q Consensus       155 ~~~~~-~~~~~~s-~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  214 (223)
                      +|... .++|+.+ .+.+++..-.-.+.+.+.|+++|||++|..+++|..++++|+...+..
T Consensus        43 sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          43 SFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            44443 5677754 345788888889999999999999999999999999999999877654

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.16  E-value=0.02  Score=40.75  Aligned_cols=62  Identities=16%  Similarity=0.225  Sum_probs=48.6

Q ss_pred             HHHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434          151 GLAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  212 (223)
Q Consensus       151 ~~~~~~~~~-~~~~~~s~-~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~  212 (223)
                      +..+++... .++|+.+. +.+++..-+-.+.+.+.|+++|||++|+.+++|+.+++.|+...+
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            333444443 46777543 457788888899999999999999999999999999999988753

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.15  E-value=0.00083  Score=48.59  Aligned_cols=55  Identities=15%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             cccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027434            2 SLSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI   56 (223)
Q Consensus         2 ~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~   56 (223)
                      ..+++++|++.+-.+ ....-+.+.+.+.++++|++|+.+++++.++++|++....
T Consensus        48 s~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         48 SFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            467889999988877 4688899999999999999999999999999999988744

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.15  E-value=0.0036  Score=44.25  Aligned_cols=54  Identities=15%  Similarity=0.242  Sum_probs=45.8

Q ss_pred             HHHhhcc-hhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434          160 WFLHQTG-ATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR  213 (223)
Q Consensus       160 ~~~~~~s-~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  213 (223)
                      .++|+.+ .+.+++..-+-.+.+.+.|+++|||++|+.+++|+.+++.|+...+.
T Consensus        48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            4567644 45578888888999999999999999999999999999999987653

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.02  E-value=0.0057  Score=51.50  Aligned_cols=117  Identities=16%  Similarity=0.163  Sum_probs=80.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHH
Q 027434           62 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW  141 (223)
Q Consensus        62 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (223)
                      ...|..+++.++++.+....++||-.++.+.    .+.+.-+.                     .     .+.+.++.+|
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~----~~~~~~~~---------------------~-----~~~l~~~~W~   54 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR----GSLRAGSG---------------------G-----RSYLRRPLWW   54 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccccccch---------------------h-----hHHHhhHHHH
Confidence            4589999999999999999999997654321    01111000                     0     0011123324


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434          142 LVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  212 (223)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~  212 (223)
                      .- ......+-..+   +.++...+.+..+.++.+.-+.+.+++.++++|+++...+.|+++++.|..+.-
T Consensus        55 ~G-~~~~~~g~~~~---~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   55 IG-LLLMVLGEILN---FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HH-HHHHhcchHHH---HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            33 33333443333   346677888888888889999999999999999999999999999999987654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.97  E-value=0.0016  Score=46.49  Aligned_cols=55  Identities=16%  Similarity=0.231  Sum_probs=48.2

Q ss_pred             cccccccchhHHHHHH-HHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027434            2 SLSLKYINVAMVTVLK-NVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI   56 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~-~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~   56 (223)
                      ..+++++|++.+--+- ...-+.+.+.+.+++||++++.+++++.++++|++..-.
T Consensus        48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3578889999988774 477888999999999999999999999999999998743

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.88  E-value=0.0021  Score=45.45  Aligned_cols=54  Identities=15%  Similarity=0.162  Sum_probs=46.1

Q ss_pred             cccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434            2 SLSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   55 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~-~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~   55 (223)
                      ..+++++|++.+-.+=. ...+.+.+.+.+++||++|+.+++++.++++|++..-
T Consensus        47 s~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         47 AWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            45778888888665544 6778899999999999999999999999999998763

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.86  E-value=0.0023  Score=45.51  Aligned_cols=53  Identities=21%  Similarity=0.308  Sum_probs=45.1

Q ss_pred             cccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027434            2 SLSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG   54 (223)
Q Consensus         2 ~~al~~~~~~~~~~l~~-~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~   54 (223)
                      +.+++++|++.+-.+=. ...+.+.+.+.+++||++++.+++++.+++.|++..
T Consensus        53 s~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         53 SQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            45788899988665544 667788999999999999999999999999999875

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.75  E-value=0.31  Score=41.82  Aligned_cols=207  Identities=12%  Similarity=0.104  Sum_probs=107.0

Q ss_pred             cccccchhHHHHH-HHHHHHHHHHHHHHHhCccc---C----hhHHHHHHHHHHhhhhhcc----ccc--------ccc-
Q 027434            4 SLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRH---D----NRVWAALFLMIISAISGGI----TDL--------SFH-   62 (223)
Q Consensus         4 al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~---s----~~~~~~l~l~~~Gv~~~~~----~d~--------~~~-   62 (223)
                      +.+|+.+|...-+ ..++-+...++..++++|..   +    ..-..+++++++|+.+...    .|.        +++ 
T Consensus        93 s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~~~  172 (345)
T PRK13499         93 TMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKMGIKKAEEFNL  172 (345)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccch
Confidence            4455555544433 34455667777778888754   2    2367788899999999766    332        122 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhh----hHHHHHHHHHHH---hccccc-cccCCC
Q 027434           63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNS----LSLPLGVLLVIV---FNEVDY-LSRTPL  134 (223)
Q Consensus        63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~-~~~~~~  134 (223)
                      ..|..+++++.+.++.|......-..-.+.+ .....++.....-+..    -+.....+++..   .++..+ ..++..
T Consensus       173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~  251 (345)
T PRK13499        173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL  251 (345)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence            5899999999999999995444422110000 0012233222211111    111112222221   111111 111111


Q ss_pred             CccchHHHHHHHHHHHHHHH--HHHHH-HHHhhcchh----HHHHHhhhhhHHHHHHHHHhcCCcCC------cchhhHH
Q 027434          135 LRLPSFWLVMTLSGFLGLAI--SFTSM-WFLHQTGAT----TYSLVGSLNKIPLSVAGILLFKVPTS------LENSASI  201 (223)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~s~~----~~si~~~l~~v~~~~~~~~~~~e~~~------~~~~~G~  201 (223)
                      . .+..+-..+++.+.|...  +...+ ..-++.+..    ...+...+.-+++.+.|+ +++|.=+      -..++|.
T Consensus       252 ~-~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~  329 (345)
T PRK13499        252 A-KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGC  329 (345)
T ss_pred             c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHH
Confidence            0 011122333333333322  22222 233444322    222444666799999999 5999877      6778999


Q ss_pred             HHHHHHHHHHHh
Q 027434          202 FFGLLAGVFFAR  213 (223)
Q Consensus       202 ~li~~g~~~~~~  213 (223)
                      ++++.|..+...
T Consensus       330 vliI~g~~lig~  341 (345)
T PRK13499        330 VVIILAANIVGL  341 (345)
T ss_pred             HHHHHHHHHHhh
Confidence            999999887654

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.68  E-value=0.0033  Score=47.04  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=49.4

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434            3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   55 (223)
Q Consensus         3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~   55 (223)
                      ..++++++-+++++.....+.+.+++.++++|+++..++.|+++++.|+....
T Consensus       100 ~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen  100 LLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            45788999999999999999999999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.61  E-value=0.0088  Score=41.28  Aligned_cols=51  Identities=18%  Similarity=0.219  Sum_probs=27.1

Q ss_pred             HHHHHH-HHHhhcchhHH-HHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHH
Q 027434          154 ISFTSM-WFLHQTGATTY-SLVGSLNKIPLSVAGILLFKVPTSLENSASIFFG  204 (223)
Q Consensus       154 ~~~~~~-~~~~~~s~~~~-si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li  204 (223)
                      .++..+ .++|+.+...+ .+..-+..+...+.|.++|||++|+.++.|+.++
T Consensus        41 ~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   41 LSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            343333 56787655444 6666678899999999999999999999999874

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.57  E-value=0.0007  Score=55.12  Aligned_cols=71  Identities=15%  Similarity=0.181  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434          145 TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  215 (223)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  215 (223)
                      ++=|+.|+.--+..|++.++.+-..+.++....|++++++++.+++|+.|..+..|..+.+.|+.+..+.+
T Consensus       101 iLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  101 ILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             EeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            33455555445555678899999999999999999999999999999999999999999999998876543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.55  E-value=0.0067  Score=42.66  Aligned_cols=54  Identities=22%  Similarity=0.225  Sum_probs=45.3

Q ss_pred             ccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027434            3 LSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI   56 (223)
Q Consensus         3 ~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~   56 (223)
                      .|+|++|++.+-.+ ...-.+-+.+.+.+++||+.++.+++++.++++|++..-.
T Consensus        49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            57888898876544 4555777999999999999999999999999999987643

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.49  E-value=0.17  Score=37.93  Aligned_cols=139  Identities=17%  Similarity=0.161  Sum_probs=86.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHH
Q 027434           63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL  142 (223)
Q Consensus        63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (223)
                      +...+.++.+..+-..+.-...|+.+..       + ++.--...++..+...+..+....+...+. .. ....| .|.
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~-------~-spl~As~isf~vGt~~L~~l~l~~~~~~~~-a~-~~~~p-wW~   72 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYL-------G-SPLLASLISFLVGTVLLLILLLIKQGHPGL-AA-VASAP-WWA   72 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHc-------C-ChHHHHHHHHHHHHHHHHHHHHHhcCCCch-hh-ccCCc-hHH
Confidence            3566778888888888888888876642       1 455556667777777777666664333222 11 11112 132


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhh-hhHHHHHHHHH-hcC---CcCCcchhhHHHHHHHHHHHHHhh
Q 027434          143 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSL-NKIPLSVAGIL-LFK---VPTSLENSASIFFGLLAGVFFARA  214 (223)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l-~~v~~~~~~~~-~~~---e~~~~~~~~G~~li~~g~~~~~~~  214 (223)
                        ...|.+|..+-.+.-....+.+++++...... +-+.++++..+ ++|   .++|..-++|++++++|+++....
T Consensus        73 --~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          73 --WIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             --HHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence              34467776655555455677777666554444 55666666655 333   578999999999999995554443

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.27  E-value=0.16  Score=43.15  Aligned_cols=137  Identities=12%  Similarity=0.123  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccc--cccc---cCCCCccc-hHHHH
Q 027434           70 IINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEV--DYLS---RTPLLRLP-SFWLV  143 (223)
Q Consensus        70 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~-~~~~~  143 (223)
                      +.-.+-.+......|+..+++     ..+..+.+.++..=+.-.+++....+..+..  +...   +...+..+ +.+ -
T Consensus        21 ~~~t~~~~~l~l~l~ys~~~~-----~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l-k   94 (345)
T KOG2234|consen   21 IVLTAQNTALTLLLRYSRTRE-----KPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETL-K   94 (345)
T ss_pred             HHHHHHHhhHHHHHHHHhcCC-----CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHH-H
Confidence            334445556667777665432     2356666666665555555555544433211  1110   10111111 111 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434          144 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA  212 (223)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~  212 (223)
                      +.+-+.+=..-+...|...++.+|+++.+..++|...+.+++..+++++++..||...++-..|+.+..
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            222222223334455567889999999999999999999999999999999999999999899988776

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.19  E-value=0.096  Score=44.87  Aligned_cols=138  Identities=13%  Similarity=0.109  Sum_probs=77.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHH-----hhhHHHHHHHHHHHhccccccccCCCCcc
Q 027434           63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLN-----NSLSLPLGVLLVIVFNEVDYLSRTPLLRL  137 (223)
Q Consensus        63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
                      ..|+++.+++++|++.+.+-.|| .|+          .+||.. +-     .-.-.|... ..+..++..+..+  .. +
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~----------w~wE~~-W~v~gi~~wl~~~~~~-g~~~~~~f~~~~~--~~-~   69 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-VKK----------WSWETM-WSVGGIFSWLILPWLI-AALLLPDFWAYYS--SF-S   69 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-cCC----------CchhHH-HHHHHHHHHHHHHHHH-HHHHhhhHHHHHH--hc-C
Confidence            47999999999999999999888 332          344433 21     111111111 1111122212111  11 2


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHhhhhhHHHHHHHHHhcCCcC---C----cchhhHHHHHHHHHH
Q 027434          138 PSFWLVMTLSGFLGLAISFTSMWFLHQTGATT-YSLVGSLNKIPLSVAGILLFKVPT---S----LENSASIFFGLLAGV  209 (223)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~si~~~l~~v~~~~~~~~~~~e~~---~----~~~~~G~~li~~g~~  209 (223)
                      +..+..-.+.|.+=..-+...+..+|+.+-.. ..+..-+.-+.+++++.+++||=.   +    ....+|.+++++|+.
T Consensus        70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~  149 (345)
T PRK13499         70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA  149 (345)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence            23344444444443333444445667655333 333344577889999999998532   2    346778889999999


Q ss_pred             HHHhhhh
Q 027434          210 FFARAKM  216 (223)
Q Consensus       210 ~~~~~~~  216 (223)
                      +.+++..
T Consensus       150 l~s~Ag~  156 (345)
T PRK13499        150 IVGRAGQ  156 (345)
T ss_pred             HHHHhhh
Confidence            9888333

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.11  E-value=0.00034  Score=56.20  Aligned_cols=192  Identities=16%  Similarity=0.179  Sum_probs=114.4

Q ss_pred             ccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHH----HHHHHHHHhhhhhccccc--------ccchhhHHHH
Q 027434            3 LSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVW----AALFLMIISAISGGITDL--------SFHAVGYAWQ   69 (223)
Q Consensus         3 ~al~~~~~~~~~~l~~-~~pi~~~i~~~~~~~e~~s~~~~----~~l~l~~~Gv~~~~~~d~--------~~~~~G~~~~   69 (223)
                      .|.+++.+|.+.=+.. .+-+-+-+++.+.++|+.+..+.    .++++.++|+.+.++.|.        ++--.|....
T Consensus        78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L  157 (288)
T COG4975          78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVIL  157 (288)
T ss_pred             hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeee
Confidence            4555655555443333 23444667888999999888765    578888899999876552        1124688888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHH
Q 027434           70 IINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGF  149 (223)
Q Consensus        70 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (223)
                      +.|.+.|..|.+..+..           +.+.++...-++.-.....+.+....+|..        .+...|..++ .|.
T Consensus       158 ~iSt~GYv~yvvl~~~f-----------~v~g~saiLPqAiGMv~~ali~~~~~~~~~--------~~K~t~~nii-~G~  217 (288)
T COG4975         158 LISTLGYVGYVVLFQLF-----------DVDGLSAILPQAIGMVIGALILGFFKMEKR--------FNKYTWLNII-PGL  217 (288)
T ss_pred             eeeccceeeeEeeeccc-----------cccchhhhhHHHHHHHHHHHHHhhcccccc--------hHHHHHHHHh-hHH
Confidence            88999999999887765           456666555443322222222222221111        1222243332 333


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchh----hHHHHHHHHHHHHHhh
Q 027434          150 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGVFFARA  214 (223)
Q Consensus       150 ~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~----~G~~li~~g~~~~~~~  214 (223)
                      .=..-+...+.+-++.+..+.=....+--+++++-|+++++|+=|-.++    +|+++++.|..+....
T Consensus       218 ~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~  286 (288)
T COG4975         218 IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIA  286 (288)
T ss_pred             HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhee
Confidence            3222244444445555444333344455788889999999999987664    5777778887766544

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.01  E-value=0.0069  Score=41.81  Aligned_cols=46  Identities=17%  Similarity=0.294  Sum_probs=25.4

Q ss_pred             cccccccchhHHHH-HHHHHHHHHHHHHHHHhCcccChhHHHHHHHH
Q 027434            2 SLSLKYINVAMVTV-LKNVTNVITAVGEMYLFNKRHDNRVWAALFLM   47 (223)
Q Consensus         2 ~~al~~~~~~~~~~-l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~   47 (223)
                      ..+++++|++.+-- ......+.+.+.+.+++||+.|+.++.++.++
T Consensus        47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            46788999998855 45688999999999999999999999998764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=95.82  E-value=0.017  Score=46.83  Aligned_cols=53  Identities=11%  Similarity=0.246  Sum_probs=48.4

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434            3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG   55 (223)
Q Consensus         3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~   55 (223)
                      .++.++|...+.++.++.|.+-++.+.++++|++|..||+++..++.++.-.+
T Consensus       229 iAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~  281 (292)
T COG5006         229 IALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST  281 (292)
T ss_pred             HHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence            46788999999999999999999999999999999999999999988876443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.72  E-value=0.15  Score=42.13  Aligned_cols=80  Identities=14%  Similarity=0.168  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh-hhhhHHHHHHHHHhcCCcCCcchhh----HHHHHHHHHHHHHhhh
Q 027434          141 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVG-SLNKIPLSVAGILLFKVPTSLENSA----SIFFGLLAGVFFARAK  215 (223)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~-~l~~v~~~~~~~~~~~e~~~~~~~~----G~~li~~g~~~~~~~~  215 (223)
                      |..-+++|.+=..-+...|...++.+..++-.+. -++-+.+.++|.++|||--+..+++    +.++++.|+.+.++++
T Consensus        45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~  124 (269)
T PF06800_consen   45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD  124 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence            4455556665444455555666655444433332 2567889999999999977765554    5667888999888877


Q ss_pred             hhhhh
Q 027434          216 MWERS  220 (223)
Q Consensus       216 ~~~~~  220 (223)
                      +++++
T Consensus       125 ~~~~~  129 (269)
T PF06800_consen  125 KKSDK  129 (269)
T ss_pred             ccccc
Confidence            76554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.64  E-value=0.08  Score=45.37  Aligned_cols=75  Identities=11%  Similarity=0.019  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhh
Q 027434          144 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE  218 (223)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  218 (223)
                      -++-|.+=++-+|....++++++....+++.+....++..+|.++-+|++|+...++.++.+.|+++.+....|+
T Consensus       162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            334455556667776678999999999999999999999999999999999999999999999999877654433

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=93.36  E-value=0.059  Score=38.49  Aligned_cols=51  Identities=16%  Similarity=0.241  Sum_probs=41.8

Q ss_pred             cccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027434            4 SLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG   54 (223)
Q Consensus         4 al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~   54 (223)
                      .++..++|.+.-+ .+++=+||++.++++.+|..+++.+.|+.+++.|+.+.
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            3556666666666 48888999999988888888999999999999999764

Many members are annotated as potential transmembrane proteins.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=92.01  E-value=5.5  Score=34.06  Aligned_cols=139  Identities=11%  Similarity=0.096  Sum_probs=73.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHH----HHHhhhHHHHHHHHHHHhccccccccCCCCccc
Q 027434           63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMV----LLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLP  138 (223)
Q Consensus        63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (223)
                      ..|.++..+++++.+.+.+=.||..           --+||..    ...+-.-.|....... ..|..+..+..+  ..
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkvk-----------~WsWEs~Wlv~gi~swli~P~~~a~l~-ip~~~~i~~~~~--~~   71 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKVK-----------GWSWESYWLVQGIFSWLIVPWLWALLA-IPDFFSIYSATP--AS   71 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhcC-----------CccHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHhCC--hh
Confidence            5799999999999999999888862           2445532    2222233333332221 122222221111  11


Q ss_pred             hHHHHHHHHHHHHHHHHHHH--H-HHHhhcc-hhHHHHHhhhhhHHHHHHHHHhcC-------CcCCcchhhHHHHHHHH
Q 027434          139 SFWLVMTLSGFLGLAISFTS--M-WFLHQTG-ATTYSLVGSLNKIPLSVAGILLFK-------VPTSLENSASIFFGLLA  207 (223)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~s-~~~~si~~~l~~v~~~~~~~~~~~-------e~~~~~~~~G~~li~~g  207 (223)
                      .    +....+++.+.....  | ..+|+.+ ++..++..-+-.++.+++..++.|       ++-.....+|.+++++|
T Consensus        72 ~----l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiG  147 (344)
T PF06379_consen   72 T----LFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIG  147 (344)
T ss_pred             H----HHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHH
Confidence            1    122233333332222  2 3466643 333444444445555555555433       23345788999999999


Q ss_pred             HHHHHhhhhhhh
Q 027434          208 GVFFARAKMWER  219 (223)
Q Consensus       208 ~~~~~~~~~~~~  219 (223)
                      +.+..++..+|.
T Consensus       148 Iai~g~AG~~Ke  159 (344)
T PF06379_consen  148 IAICGKAGSMKE  159 (344)
T ss_pred             HHHHhHHHHhhh
Confidence            999887655433

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=91.35  E-value=0.53  Score=33.65  Aligned_cols=50  Identities=16%  Similarity=0.054  Sum_probs=38.1

Q ss_pred             HHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHH
Q 027434          161 FLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVF  210 (223)
Q Consensus       161 ~~~~~s~~~~si~-~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~  210 (223)
                      .+++.+-+.+..+ +.+.-+++.+.|+++.+|..+...++|+++++.|+.+
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            4566554444444 5677888999998888888899999999999999754

Many members are annotated as potential transmembrane proteins.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=91.08  E-value=0.19  Score=39.52  Aligned_cols=61  Identities=13%  Similarity=0.047  Sum_probs=52.8

Q ss_pred             HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434          155 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  215 (223)
Q Consensus       155 ~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  215 (223)
                      +|....++++.+|+.++-...++..+.-+++++++|+++....++...+.+.|+.+.++..
T Consensus        67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D  127 (290)
T KOG4314|consen   67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD  127 (290)
T ss_pred             CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence            5554467899999999999999999999999999999999999999998888877766543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.68  E-value=1.6  Score=35.43  Aligned_cols=59  Identities=15%  Similarity=0.124  Sum_probs=50.6

Q ss_pred             HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhh
Q 027434          160 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE  218 (223)
Q Consensus       160 ~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  218 (223)
                      .+++..+=-+.-+.-+++|+..+++|+.+.++...|..+.=...++.|+.++-+.++|.
T Consensus       104 ~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv  162 (337)
T KOG1580|consen  104 QALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV  162 (337)
T ss_pred             chhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence            56677665566677889999999999999999999999999999999999998876654

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.20  E-value=8  Score=32.56  Aligned_cols=75  Identities=20%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434          143 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW  217 (223)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  217 (223)
                      ..-+.++....-+.+.|-++|++|=-+..+.-++|-+..++++.++.+.+.+.....=..++-.|+.++...+.+
T Consensus        85 ~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s  159 (327)
T KOG1581|consen   85 KYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNS  159 (327)
T ss_pred             HHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCC
Confidence            344445555656777778999999888889999999999999999999999999999999989998888765443

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.09  E-value=0.13  Score=43.23  Aligned_cols=120  Identities=14%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchH
Q 027434           61 FHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSF  140 (223)
Q Consensus        61 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (223)
                      .+..|..+++.+.+..+...++.||-.+|....+.  +.                        ++.    .++...++. 
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~--ra------------------------~~g----g~~yl~~~~-   66 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGL--RA------------------------GEG----GYGYLKEPL-   66 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHHHhhhcc--cc------------------------cCC----CcchhhhHH-
Confidence            44678888888888888888888886664211000  00                        010    111112233 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhh
Q 027434          141 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA  214 (223)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  214 (223)
                      |....+.-..|=..+|..   ....+++..+.++.+.-+...+++..+++|++++...+|++++++|....-.+
T Consensus        67 Ww~G~ltm~vGei~NFaA---YaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   67 WWAGMLTMIVGEIANFAA---YAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHHHHHHHhHhhHHH---HhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            334444455555555554   45566666666777888999999999999999999999999999997755433

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=87.77  E-value=0.26  Score=40.00  Aligned_cols=135  Identities=10%  Similarity=0.124  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHH
Q 027434           65 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM  144 (223)
Q Consensus        65 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (223)
                      .++.+++-++.|........|.-.           +|++...-+++-++.+.++.. ++-+++       . +...+..-
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG-----------~p~qQ~lGtT~GALifaiiv~-~~~~p~-------~-T~~~~iv~   62 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG-----------KPYQQTLGTTLGALIFAIIVF-LFVSPE-------L-TLTIFIVG   62 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC-----------ChhHhhhhccHHHHHHHHHHh-eeecCc-------c-chhhHHHH
Confidence            456677777888777666555422           455544433333433333332 221211       1 12223333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHhh-hhhHHHHHHHHHhcCCcCCcchh-hH---HHHHHHHHHHHHhhhhhhh
Q 027434          145 TLSGFLGLAISFTSMWFLHQTGATTYSLVGS-LNKIPLSVAGILLFKVPTSLENS-AS---IFFGLLAGVFFARAKMWER  219 (223)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~-l~~v~~~~~~~~~~~e~~~~~~~-~G---~~li~~g~~~~~~~~~~~~  219 (223)
                      +++|.+=..=+.-.|.+.+..+...+..+.+ .+-+-+.++|++.|||=-+..+. +|   .++++.|+++-++.++.+|
T Consensus        63 ~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk  142 (288)
T COG4975          63 FISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNK  142 (288)
T ss_pred             HHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccc
Confidence            3333332222233344555444443333222 46788999999999997776554 34   4467778777666655333

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=85.85  E-value=2  Score=35.26  Aligned_cols=130  Identities=18%  Similarity=0.226  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHH
Q 027434           65 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM  144 (223)
Q Consensus        65 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (223)
                      |++.++.|+++++.+.+=.||.-.          -|+.-.+.+.+........+..+..+.       +..     +...
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~----------gDg~~fQw~~~~~i~~~g~~v~~~~~~-------p~f-----~p~a   58 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDT----------GDGFFFQWVMCSGIFLVGLVVNLILGF-------PPF-----YPWA   58 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccC----------CCcHHHHHHHHHHHHHHHHHHHHhcCC-------Ccc-----eeHH
Confidence            667788899999988887776521          244434434333222222222222221       111     1111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcch-hHHHHHhhhhhHHHHHHHHH-hcCCc---C--CcchhhHHHHHHHHHHHHHhhhh
Q 027434          145 TLSGFLGLAISFTSMWFLHQTGA-TTYSLVGSLNKIPLSVAGIL-LFKVP---T--SLENSASIFFGLLAGVFFARAKM  216 (223)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~s~-~~~si~~~l~~v~~~~~~~~-~~~e~---~--~~~~~~G~~li~~g~~~~~~~~~  216 (223)
                      .+.|.+=..-+....-++|..+- .-..+.+..+-+..-..|-+ +||++   +  .+.+++|.+++++|..++..-|.
T Consensus        59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~  137 (254)
T PF07857_consen   59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKS  137 (254)
T ss_pred             HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecC
Confidence            22222211112222223444332 12233333444444444432 56532   2  47899999999999998865433

The region concerned is approximately 280 residues long.

>PRK02237 hypothetical protein; Provisional

Probab=83.96  E-value=2.2  Score=30.08  Aligned_cols=47  Identities=11%  Similarity=-0.068  Sum_probs=38.9

Q ss_pred             HHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434          169 TYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  215 (223)
Q Consensus       169 ~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  215 (223)
                      .++..+-+-.+.++++++.+-|++++...++|.+++++|+.+.-..+
T Consensus        61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            35556666678888999999999999999999999999987665444

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=82.99  E-value=2.1  Score=30.12  Aligned_cols=47  Identities=15%  Similarity=0.034  Sum_probs=39.0

Q ss_pred             HHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434          170 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM  216 (223)
Q Consensus       170 ~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  216 (223)
                      ++..+-.-.+.++++++.+-+++++-..++|..+++.|+.+.-..+|
T Consensus        60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            45556666788999999999999999999999999999887655443

; GO: 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.76
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.47
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.26
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.12

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.76  E-value=1.6e-08  Score=73.99  Aligned_cols=69  Identities=9%  Similarity=0.001  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHH-HHHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434          148 GFLGLAISFTSM-WFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM  216 (223)
Q Consensus       148 ~~~~~~~~~~~~-~~~~~~s~~~~si~-~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  216 (223)
                      ++++..++|..+ .++|+.++..+..+ ..+.|+.++++|+++|||++|+.+++|++++++|+++.+..++
T Consensus        36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~  106 (137)
T 2i68_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR  106 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            445555565555 67899999988777 8999999999999999999999999999999999998876443

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.47  E-value=6e-07  Score=63.20  Aligned_cols=68  Identities=9%  Similarity=0.009  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHH-HHHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434          148 GFLGLAISFTSM-WFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK  215 (223)
Q Consensus       148 ~~~~~~~~~~~~-~~~~~~s~~~~si~-~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  215 (223)
                      ++.+...++..+ .++|+.+...+..+ ..+.|+.+.++|+++|||++|..+++|+++++.|+...+..+
T Consensus        36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344444455544 57899888888676 789999999999999999999999999999999999887654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.26  E-value=9.3e-07  Score=62.23  Aligned_cols=57  Identities=16%  Similarity=0.234  Sum_probs=52.5

Q ss_pred             cccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc
Q 027434            2 SLSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD   58 (223)
Q Consensus         2 ~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d   58 (223)
                      +.++++.|++.+..+ +.+.|+++.+++.+++||++++.+++++.++++|++.....+
T Consensus        48 ~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            468899999999888 899999999999999999999999999999999999876543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.12  E-value=1.1e-06  Score=64.22  Aligned_cols=56  Identities=16%  Similarity=0.236  Sum_probs=41.0

Q ss_pred             cccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027434            2 SLSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT   57 (223)
Q Consensus         2 ~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~   57 (223)
                      +++++++|++.+..+ .++.|+++.+++.++++|++++.+++|+.++++|+++....
T Consensus        48 ~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            568899999988888 99999999999999999999999999999999999987543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00