Citrus Sinensis ID: 027439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mllrssstpilnswiphakdsspvpftltassspcdslkSMTRtlsetdlrslplpkkkatsnvFNGLAleekedesetasfdggwlgkeACEIGVLVgggiyggggnmcgggggsdggdgdgrwgswdpnnhgnnstdLYYQKMiqadprnpllLSNYARFLKEARGDLLKAEEYCARAIlmspndgnvlsmyGDLIWQSHKDASRAESYFDQAVKAAPDDW
Flexible Loop (DISEMBL)
mllrssstpilnswiphakdsspVPFTLtassspcdsLKSMTRTLsetdlrslplpkkkatsnVFNGlaleekedesetASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW
Low Complexity Region (SEG)
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVgggiyggggnmcgggggsdggdgdgrwgSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW
Disordered region (IsUnstruct)
*********************************************************************************FDGGWLGKEACEIGVLVGGGIYGG*********************************DLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS**********************
Disordered Region (DISOPRED)
MLLRSSSTP***********************************************************************************************************DGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP***
Disordered Region (DISEMBL)
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALE**********FDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA********
Disordered Region (DISPRO)
*********IL********************************************************************************C*IGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
118486453	304	unknown [Populus trichocarpa]	0.977	0.717	0.552	2e-54
224090403	304	predicted protein [Populus trichocarpa]	0.986	0.723	0.519	4e-51
225445531	288	PREDICTED: uncharacterized protein LOC10	0.946	0.732	0.538	1e-47
357478127	292	hypothetical protein MTR_4g114690 [Medic	0.932	0.712	0.469	3e-46
388492190	292	unknown [Medicago truncatula]	0.932	0.712	0.469	3e-46
217073634	292	unknown [Medicago truncatula]	0.932	0.712	0.469	4e-46
449464638	293	PREDICTED: uncharacterized protein LOC10	0.991	0.754	0.502	2e-45
449523397	297	PREDICTED: uncharacterized protein LOC10	0.991	0.744	0.502	2e-45
255572539	292	conserved hypothetical protein [Ricinus	0.959	0.732	0.490	1e-44
224144206	307	predicted protein [Populus trichocarpa]	0.995	0.723	0.482	2e-44

>gi|118486453|gb|ABK95066.1| unknown [Populus trichocarpa]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/255 (55%), Positives = 164/255 (64%), Gaps = 37/255 (14%)

Query: 1   MLLRSSSTPILNSWIP-HAKDSSP-----------VPFTLTASSSPC---------DSLK 39
           MLLRSSSTP LNSWIP H+K+ SP            P +LTASSS           DS+K
Sbjct: 1   MLLRSSSTPFLNSWIPPHSKEPSPEPESVHQIQKTRPISLTASSSSPFSSISSQDHDSIK 60

Query: 40  SMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIG---- 95
            MTR  SE DLR L +PK+K ++ + NG+ ++E+ +E    SF  G L  E CE G    
Sbjct: 61  RMTRAFSEADLRDLSVPKRKPSNGILNGIPVDEEVEEK--VSFWEGGLFFEGCEAGEKGE 118

Query: 96  -------VLVGGGIYGGGG-NMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQ 147
                  VLV GG   GGG   CGG G SD GD DG  GS + +N G  +TD YYQ MI+
Sbjct: 119 GDNGVLEVLVTGGGGDGGGRKFCGGRGRSDFGD-DGGSGSRE-SNEGIETTDAYYQTMIE 176

Query: 148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207
           A+P NPL L NYARFLKE R D +KAEEYC RAIL +PND +VLSMY DLIWQSHKDASR
Sbjct: 177 ANPGNPLFLRNYARFLKEVRLDFVKAEEYCGRAILANPNDADVLSMYADLIWQSHKDASR 236

Query: 208 AESYFDQAVKAAPDD 222
           AESYF +AVKAAPDD
Sbjct: 237 AESYFLRAVKAAPDD 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090403|ref|XP_002308981.1| predicted protein [Populus trichocarpa] gi|222854957|gb|EEE92504.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 133/256 (51%), Positives = 158/256 (61%), Gaps = 36/256 (14%)

Query: 1   MLLRSSSTPILNSWIP-HAKDSSPVPFTL--------------------TASSSPCDSLK 39
           MLLRSSSTPILN+WIP H+K+ SP P +L                    + SS   DS+K
Sbjct: 1   MLLRSSSTPILNTWIPPHSKEPSPEPESLHQIQKSRSISLTASSSSSFSSISSQDNDSIK 60

Query: 40  SMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETAS---FDGGWLGKEACEIGV 96
            MTR  SETDLR L +PK+K ++ + NG++++E+ +E         + GW   E CE+GV
Sbjct: 61  RMTRAFSETDLRDLSVPKRKPSNRILNGISVDEEVEEEVEKKVSFLESGWFF-EGCEVGV 119

Query: 97  LVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWD----------PNNHGNNSTDLYYQKMI 146
             G    G  G M  GGG   GG      G  D           +N G  STD+YYQKMI
Sbjct: 120 -KGQSDSGMLGVMVTGGGSEGGGGKFYGGGGSDFGDDGGSGFGESNKGIESTDVYYQKMI 178

Query: 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206
           +ADP NPLLLSNYA+FLKE R D +KAEEYC RAIL SPND +VLSMY DLIW S K AS
Sbjct: 179 EADPGNPLLLSNYAKFLKEVRADFVKAEEYCGRAILASPNDADVLSMYADLIWHSQKHAS 238

Query: 207 RAESYFDQAVKAAPDD 222
           RAESYFDQAVKAAPDD
Sbjct: 239 RAESYFDQAVKAAPDD 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445531|ref|XP_002285275.1| PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera] gi|297738966|emb|CBI28211.3| unnamed protein product [Vitis vinifera]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/247 (53%), Positives = 162/247 (65%), Gaps = 36/247 (14%)

Query: 1   MLLRSSSTPILNSWIPHAKDSSP----VPFTLTA---------SSSPCDSLKSMTRTLSE 47
           MLLRSSSTPILNSW P++K+SS     VP  L +          SS   S K M+R LSE
Sbjct: 1   MLLRSSSTPILNSWPPNSKESSSEPEMVPQILLSRSISLTTSSLSSVEGSSKKMSRALSE 60

Query: 48  TDLRSLPLPKKK---ATSNVFNGLALEEKEDE-----SETASFDGGW--LGKEA-CEIGV 96
           TDLR L LPK+K    T N  + L ++E+E+E     S TAS+ G W  +G +A CE GV
Sbjct: 61  TDLRELSLPKRKPITKTVNRLSSLPVDEREEEDSCPISRTASYGGLWWGVGSDAGCE-GV 119

Query: 97  LVGGGIYGGGGNMCGGGGGSDG-GDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLL 155
            V GG  GGGG+  G   G  G GD          +N+GN + + YY+ MI+A+P N LL
Sbjct: 120 CVEGGSEGGGGSDGGYAHGKSGYGD----------SNNGNGNMESYYRTMIEANPGNALL 169

Query: 156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215
           L NYARFLKE RGD +KAEEYC RAIL +PNDGN+LS++ DLIWQ HKD+ RAESYFDQA
Sbjct: 170 LGNYARFLKEVRGDYIKAEEYCGRAILANPNDGNILSLFADLIWQVHKDSDRAESYFDQA 229

Query: 216 VKAAPDD 222
           VKA+PDD
Sbjct: 230 VKASPDD 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478127|ref|XP_003609349.1| hypothetical protein MTR_4g114690 [Medicago truncatula] gi|355510404|gb|AES91546.1| hypothetical protein MTR_4g114690 [Medicago truncatula]

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/260 (46%), Positives = 150/260 (57%), Gaps = 52/260 (20%)

Query: 1   MLLRSSSTPILNSWIPH--AKDSSPVPFTL------------------TASSSPCDSLKS 40
           MLLRSSSTP++N WIPH  +KDSSP P  L                  ++ S  C S+  
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 41  MTRTLSETDLRSL----PLPKKKATSNVFNGLALEEKEDESET---------ASFDGGW- 86
           MTR LSETDL S     PL +++           +E E+ES T         ASF     
Sbjct: 61  MTRALSETDLSSQLNRKPLHRRQ----------FDEDEEESRTGTFGARSRTASFSSALC 110

Query: 87  ----LGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYY 142
                 +   E+    GG +        GGG   + G G  R+G    +NHGN+STDLYY
Sbjct: 111 SLTEFEESQSEVDARDGGSMLVLVEEGGGGGFDKNDG-GVSRFGD---SNHGNDSTDLYY 166

Query: 143 QKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202
           + MI+A+P NPL L NYA++LKE R D +KAEEYC RAIL +PNDGNVLS+Y DLIW+ H
Sbjct: 167 RTMIEANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECH 226

Query: 203 KDASRAESYFDQAVKAAPDD 222
           KDA RAE+YFDQAVKAAPDD
Sbjct: 227 KDAPRAETYFDQAVKAAPDD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492190|gb|AFK34161.1| unknown [Medicago truncatula]

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/260 (46%), Positives = 150/260 (57%), Gaps = 52/260 (20%)

Query: 1   MLLRSSSTPILNSWIPH--AKDSSPVPFTL------------------TASSSPCDSLKS 40
           MLLRSSSTP++N WIPH  +KDSSP P  L                  ++ S  C S+  
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 41  MTRTLSETDLRSL----PLPKKKATSNVFNGLALEEKEDESET---------ASFDGGW- 86
           MTR LSETDL S     PL +++           +E E+ES T         ASF     
Sbjct: 61  MTRALSETDLSSQLNRKPLHRRQ----------FDEDEEESRTGTFGARSRTASFSSALC 110

Query: 87  ----LGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYY 142
                 +   E+    GG +        GGG   + G G  R+G    +NHGN+STDLYY
Sbjct: 111 SLTEFEESQSEVDARDGGSMLVLVEEGGGGGFDKNDG-GVSRFGD---SNHGNDSTDLYY 166

Query: 143 QKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202
           + MI+A+P NPL L NYA++LKE R D +KAEEYC RAIL +PNDGNVLS+Y DLIW+ H
Sbjct: 167 RTMIEANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECH 226

Query: 203 KDASRAESYFDQAVKAAPDD 222
           KDA RAE+YFDQAVKAAPDD
Sbjct: 227 KDAPRAETYFDQAVKAAPDD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073634|gb|ACJ85177.1| unknown [Medicago truncatula]

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/260 (46%), Positives = 150/260 (57%), Gaps = 52/260 (20%)

Query: 1   MLLRSSSTPILNSWIPH--AKDSSPVPFTL------------------TASSSPCDSLKS 40
           MLLRSSSTP++N WIPH  +KDSSP P  L                  ++ S  C S+  
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 41  MTRTLSETDLRSL----PLPKKKATSNVFNGLALEEKEDES---------ETASFDGGW- 86
           MTR LSETDL S     PL +++           +E E+ES          TASF     
Sbjct: 61  MTRALSETDLSSQLNRKPLHRRQ----------FDEDEEESGTGTFGARSRTASFSSALC 110

Query: 87  ----LGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYY 142
                 +   E+    GG +        GGG   + G G  R+G    +NHGN+STDLYY
Sbjct: 111 SLTEFEESQSEVDARDGGSMLVLVEEGGGGGFDKNDG-GVSRFGD---SNHGNDSTDLYY 166

Query: 143 QKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202
           + MI+A+P NPL L NYA++LKE R D +KAEEYC RAIL +PNDGNVLS+Y DLIW+ H
Sbjct: 167 RTMIEANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECH 226

Query: 203 KDASRAESYFDQAVKAAPDD 222
           KDA RAE+YFDQAVKAAPDD
Sbjct: 227 KDAPRAETYFDQAVKAAPDD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464638|ref|XP_004150036.1| PREDICTED: uncharacterized protein LOC101218093 [Cucumis sativus]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/245 (50%), Positives = 154/245 (62%), Gaps = 24/245 (9%)

Query: 1   MLLRSSSTPILNSWIPHAKDSS---------PVPFTLTASSSPC-------DSLKSMTRT 44
           M+LRS+STP+LNSW+ H++DSS         P   ++  S SP        DS + +TRT
Sbjct: 1   MILRSASTPLLNSWLHHSRDSSLEPEIVHQIPKSRSILLSGSPSCLSPIIDDSPRRITRT 60

Query: 45  LSETDLRSLPLPKKKATSNVFNGLALEEKEDE------SETASFDGGWLGKEACEIGVLV 98
           LSETDL+ L + K K  S   +G +   +E        S+TAS   G +  E  E G  V
Sbjct: 61  LSETDLKDLSMAKMKPFSRTLSGFSEMAEETHGVGFSCSKTASLSCGSIS-ETGEDGGFV 119

Query: 99  GGGIYGGGGNMCGGGGGSDGGDGDGRWG-SWDPNNHGNNSTDLYYQKMIQADPRNPLLLS 157
              + GG G   G   G  G DG   W   +  +N GN STDLYYQKMI+A+P N +LLS
Sbjct: 120 SVLVGGGVGGSGGRIHGGGGSDGGDDWSFGFGDSNRGNESTDLYYQKMIEANPGNSMLLS 179

Query: 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217
           NYARFLKE RGDL+KA+EYC RAIL +P DGNVLSMY DLIW++ KD+ RAESYF+QAVK
Sbjct: 180 NYARFLKEVRGDLVKAQEYCGRAILNNPEDGNVLSMYADLIWETQKDSPRAESYFNQAVK 239

Query: 218 AAPDD 222
           AAP+D
Sbjct: 240 AAPED 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523397|ref|XP_004168710.1| PREDICTED: uncharacterized protein LOC101231631 [Cucumis sativus]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/245 (50%), Positives = 154/245 (62%), Gaps = 24/245 (9%)

Query: 1   MLLRSSSTPILNSWIPHAKDSS---------PVPFTLTASSSPC-------DSLKSMTRT 44
           M+LRS+STP+LNSW+ H++DSS         P   ++  S SP        DS + +TRT
Sbjct: 1   MILRSASTPLLNSWLHHSRDSSLEPEIVHQIPKSRSILLSGSPSCLSPIIDDSPRRITRT 60

Query: 45  LSETDLRSLPLPKKKATSNVFNGLALEEKEDE------SETASFDGGWLGKEACEIGVLV 98
           LSETDL+ L + K K  S   +G +   +E        S+TAS   G +  E  E G  V
Sbjct: 61  LSETDLKDLSMAKMKPFSRTLSGFSEMAEETHGVGFSCSKTASLSCGSIS-ETGEDGGFV 119

Query: 99  GGGIYGGGGNMCGGGGGSDGGDGDGRWG-SWDPNNHGNNSTDLYYQKMIQADPRNPLLLS 157
              + GG G   G   G  G DG   W   +  +N GN STDLYYQKMI+A+P N +LLS
Sbjct: 120 SVLVGGGVGGSGGRIHGGGGSDGGDDWSFGFGDSNRGNESTDLYYQKMIEANPGNSMLLS 179

Query: 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217
           NYARFLKE RGDL+KA+EYC RAIL +P DGNVLSMY DLIW++ KD+ RAESYF+QAVK
Sbjct: 180 NYARFLKEVRGDLVKAQEYCGRAILNNPEDGNVLSMYADLIWETQKDSPRAESYFNQAVK 239

Query: 218 AAPDD 222
           AAP+D
Sbjct: 240 AAPED 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572539|ref|XP_002527204.1| conserved hypothetical protein [Ricinus communis] gi|223533469|gb|EEF35217.1| conserved hypothetical protein [Ricinus communis]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/251 (49%), Positives = 148/251 (58%), Gaps = 37/251 (14%)

Query: 1   MLLRSSSTPILNSWIP-------HAKDSSPVPFTLTASSSPCDS-----------LKSMT 42
           MLLRS+STPILNSW P       H    +P   TLTA  +   S           +K MT
Sbjct: 1   MLLRSASTPILNSWKPQPEPESFHQIQKAPRSITLTACCNSSSSLSSSSYTSEDSVKKMT 60

Query: 43  RTLSETDLRSLPLPKKKATSN--VFNGLALEEKEDESETASFDGG---------WLGKEA 91
           R LSETDL+   + KKK   N  + +G+  EE E E++  +F G          +  +E 
Sbjct: 61  RALSETDLKQFSVLKKKQPINNIIMDGITFEE-EVEADQMTFSGSGLSLDSSFLFNEEEE 119

Query: 92  CEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPR 151
           CE+G +   G+    G   GGGG   G    G          G+ STDLYYQ MI+A+P 
Sbjct: 120 CEVGKIQDNGLSAFVGGGVGGGGKICGAGDSGG-------RGGDGSTDLYYQNMIEANPG 172

Query: 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211
           N L LSNYARFLKE RGD +KAEEY  RAIL +P+DGN LSMY DLIWQSHKDASRAE+Y
Sbjct: 173 NSLFLSNYARFLKEVRGDFIKAEEYYERAILANPSDGNSLSMYADLIWQSHKDASRAETY 232

Query: 212 FDQAVKAAPDD 222
           FDQAVKA+PDD
Sbjct: 233 FDQAVKASPDD 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144206|ref|XP_002325219.1| predicted protein [Populus trichocarpa] gi|222866653|gb|EEF03784.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/257 (48%), Positives = 156/257 (60%), Gaps = 35/257 (13%)

Query: 1   MLLRSSSTPILNSWIP-HAKDSSPVP-----FTLTASSSPC---------------DSLK 39
           MLLRSSSTPILNSWIP H+K+ SP P       +T S S                 DS +
Sbjct: 1   MLLRSSSTPILNSWIPPHSKEPSPEPESLHQIQITRSISLAASSSGPFSSISSQGHDSNE 60

Query: 40  SMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETAS---------FDGGWLGKE 90
            +    S+ DLR   +PK+K ++ + NG+ ++++ DE              F+G  +G++
Sbjct: 61  RVKIAFSKNDLRDFSVPKRKPSNKILNGITVDQEVDEEVEKKVSFWESGLLFEGFGVGEK 120

Query: 91  AC----EIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGS-WDPNNHGNNSTDLYYQKM 145
                  +GVLV GG   GGG    GGGG  G D     GS +  +N G  +TD+YYQ M
Sbjct: 121 GEGDNGVLGVLVTGGGSDGGGRKFCGGGGGFGSDFGDDGGSRFRESNEGIETTDVYYQTM 180

Query: 146 IQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205
           I+A+P NPL L NYARFLKE R D +KAEEYC RAIL +PND +VLSMY DLIWQ HK+A
Sbjct: 181 IEANPGNPLFLRNYARFLKEIRLDFVKAEEYCGRAILANPNDADVLSMYADLIWQGHKNA 240

Query: 206 SRAESYFDQAVKAAPDD 222
           SRAESYFD+AVKAAPDD
Sbjct: 241 SRAESYFDRAVKAAPDD 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.421	0.324	0.648	9.3e-38
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.390	0.285	0.597	1.6e-32
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.399	0.373	0.633	8.4e-26
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.367	0.299	0.548	1.3e-23
TAIR|locus:2197768	310	TPR4 "tetratricopeptide repeat	0.408	0.293	0.462	3.2e-17
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.390	0.162	0.402	8.4e-12
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.372	0.150	0.385	1.3e-09
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.372	0.161	0.349	0.00015

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 61/94 (64%), Positives = 81/94 (86%)

Query:   129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG 188
             D  + G+++TD++Y+KMI+A+P N + LSNYA+FLKE R D LKAEEYC RAIL+SPNDG
Sbjct:   147 DGGDGGDDNTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDG 206

Query:   189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
             NVL+MY +L+W+ HKD+SRAE+YF+QAV AAP+D
Sbjct:   207 NVLAMYAELVWKIHKDSSRAENYFNQAVAAAPED 240

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 52/87 (59%), Positives = 68/87 (78%)

Query:   136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195
             ++TD YY++MI ++P N LL  NYA+FLKE +GD+ KAEEYC RAIL + NDGNVLS+Y 
Sbjct:   163 DATDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYA 222

Query:   196 DLIWQSHKDASRAESYFDQAVKAAPDD 222
             DLI  +H+D  RA SY+ QAVK +P+D
Sbjct:   223 DLILHNHQDRQRAHSYYKQAVKMSPED 249

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 57/90 (63%), Positives = 70/90 (77%)

Query:   134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPNDGNVLS 192
             G  S D YY++MIQ  P + LLLSNYARFLKE +GD  KAEEYC RA+L  S  DG +LS
Sbjct:   106 GGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLS 165

Query:   193 MYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
             MYGDLIW++H D  RA+SY+DQAV+++PDD
Sbjct:   166 MYGDLIWKNHGDGVRAQSYYDQAVQSSPDD 195

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 45/82 (54%), Positives = 59/82 (71%)

Query:   141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
             YY++M++++P N LLL NY +FL E   D   AEEY  RAIL +P DG  LSMYG LIW+
Sbjct:   153 YYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWE 212

Query:   201 SHKDASRAESYFDQAVKAAPDD 222
             + +D  RA+ YFDQAV A+P+D
Sbjct:   213 TKRDEKRAQGYFDQAVNASPND 234

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 43/93 (46%), Positives = 63/93 (67%)

Query:   130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN 189
             P     N  D YY+ M++  P +PLLL NYA+FL E +GDL  AEEY  +  ++ P+DG 
Sbjct:   114 PGYDDKNCGD-YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGV 171

Query:   190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
              L+ YG L+ + H+D ++A SYF++AV+A+PDD
Sbjct:   172 ALANYGRLVMKLHQDEAKAMSYFERAVQASPDD 204

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 8.4e-12, P = 8.4e-12
 Identities = 35/87 (40%), Positives = 48/87 (55%)

Query:   134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSM 193
             G   T+L YQ  +  +P NPLLL+NYA+FL     D  +AEEY  RA+ + P D    S 
Sbjct:   416 GYFKTELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSK 475

Query:   194 YGDLIWQSHKDASRAESYFDQAVKAAP 220
             Y   +W++  D   AE  F +A+ A P
Sbjct:   476 YATFLWRARDDLWAAEETFLEAIDADP 502

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 32/83 (38%), Positives = 46/83 (55%)

Query:   138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197
             T+L YQ  +  +P N LLL+NYA+FL     D  +AE+Y  RA    P D   L+ Y   
Sbjct:   435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query:   198 IWQSHKDASRAESYFDQAVKAAP 220
             +W++  D  RAE  + +A+ A P
Sbjct:   495 LWRARNDIWRAEETYLEAISADP 517

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 29/83 (34%), Positives = 41/83 (49%)

Query:   138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197
             T+L Y+  +  +P N LLL+NYA+FL     D  +AE    +AI     D    S Y   
Sbjct:   400 TELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIF 459

Query:   198 IWQSHKDASRAESYFDQAVKAAP 220
             +W+   D   AE  F +A+ A P
Sbjct:   460 LWKVRNDLWAAEENFLEAISADP 482


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.128   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      223       195   0.00078  111 3  11 23  0.39    33
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  179 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.66u 0.08s 17.74t   Elapsed:  00:00:37
  Total cpu time:  17.66u 0.08s 17.74t   Elapsed:  00:00:37
  Start:  Fri May 10 16:01:27 2013   End:  Fri May 10 16:02:04 2013

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VI0496 hypothetical protein (304 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-06
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	1e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	5e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	1e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-04
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	7e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.003

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210
            N   L N    L +  GD  +A E   +A+ + P++            +  KD   A  
Sbjct: 1   DNAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59

Query: 211 YFDQAVKAAP 220
             ++A++  P
Sbjct: 60  DLEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           YY+K ++ DP N     N A    +  G   +A E   +A+ + P++       G   ++
Sbjct: 22  YYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80

Query: 201 SHKDASRAESYFDQAVKAAPD 221
             K    A   +++A++  P+
Sbjct: 81  LGKYE-EALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP 185
            Y+K ++ DP N     N A    +   D  +A E   +A+ + P
Sbjct: 25  AYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
           YQ +++  P N ++L+N A    E      +A EY  RA+ ++PN   +L   G L+ + 
Sbjct: 793 YQTVVKKAPDNAVVLNNLAWLYLE--LKDPRALEYAERALKLAPNIPAILDTLGWLLVEK 850

Query: 202 HKDASRAESYFDQAVKAAPDD 222
             +A RA     +AV  AP+ 
Sbjct: 851 -GEADRALPLLRKAVNIAPEA 870

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 143 QKMIQADPRNPLLLSNYAR-FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
            K ++ DP + L  +  A     +  G+L KAE+   RA+ ++PN+G+VL+ YG  + Q 
Sbjct: 55  DKALEHDPDDYL--AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ- 111

Query: 202 HKDASRAESYFDQAVKA 218
                +A   F+QA++ 
Sbjct: 112 QGKYEQAMQQFEQAIED 128

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 155 LLSNYARFLKEARGDLLKAEEYCARAI----LMSPNDGNVLSMYGDL--IWQSHKDASRA 208
            L+N A  L+   GD  +A E   +A+     +  +         +L  ++ +  D   A
Sbjct: 7   ALNNLALVLRR-LGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 209 ESYFDQAVKAAPD 221
             Y ++A+     
Sbjct: 66  LEYLEKALALREA 78

Length = 78

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 144 KMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK 203
           K ++ DP   L     A    +  G+   A+E   +A+ ++PN+G+VL+ YG  +    +
Sbjct: 60  KALEHDPSYYLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118

Query: 204 DASRAESYFDQAVKAAPD 221
               A   F++A+ A P 
Sbjct: 119 PEE-AMQQFERAL-ADPA 134

Length = 250

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 134 GNNS-TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
           G     +  +++ +  +P N  +L+NY  FL + +G   +A +   +AI   P       
Sbjct: 79  GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQFEQAIE-DPLYPQPAR 136

Query: 193 MYGDLIWQSHK--DASRAESYFDQAVKAAPD 221
              +    + K  D  +AE Y  +A++  P 
Sbjct: 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL--I 198
             +K +  DP   L  +  A       GD  +A E   +A+ + P    +      L  +
Sbjct: 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176

Query: 199 WQSHKDASRAESYFDQAVKAAPDD 222
            ++      A    ++A+K  PDD
Sbjct: 177 LEALGRYEEALELLEKALKLNPDD 200

Length = 291

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 29/138 (21%), Positives = 44/138 (31%), Gaps = 26/138 (18%)

Query: 5   SSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNV 64
           ++++  L+S  P     S         S    S        +             ATS+ 
Sbjct: 10  AAASTSLSSSRPQLSSFSSRSPQSATRSPRASS--IKCSASAS--------ASSSATSSS 59

Query: 65  FNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGR 124
            + +A       S  ++  GG  G          GGG +GG G   GGGGG  GG G   
Sbjct: 60  ASLVANGAVALLS-ASAISGGGGG----------GGGGFGGFGG--GGGGGGGGGGGWRF 106

Query: 125 WG---SWDPNNHGNNSTD 139
           W    +    +     + 
Sbjct: 107 WLRLFAPADAHADEEQSG 124

Length = 796

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
             GD  +A      A+   P     L + G+ + +     + A +    A+ A PDD
Sbjct: 9   RAGDYDEALAALEAALARYPLAAEALLLLGEALLR-QGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206
           +  P     L N    L EA G   +A E   +A+ + P+     ++          D  
Sbjct: 89  ELLPNLAEALLNLGLLL-EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYE 147

Query: 207 RAESYFDQAVKAAPDD 222
            A   +++A++  P+ 
Sbjct: 148 EALELYEKALELDPEL 163

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
PRK15359	144	type III secretion system chaperone protein SscB;	99.49
KOG0553	304	consensus TPR repeat-containing protein [General f	99.49
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.42
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.37
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.35
PRK11189	296	lipoprotein NlpI; Provisional	99.33
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.24
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.24
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.21
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.21
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.21
PRK12370	553	invasion protein regulator; Provisional	99.15
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.15
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.14
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.13
KOG1126	638	consensus DNA-binding cell division cycle control	99.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.09
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.09
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.09
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.08
PRK15359	144	type III secretion system chaperone protein SscB;	99.06
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.05
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.04
PRK12370	553	invasion protein regulator; Provisional	99.03
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.03
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.03
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.01
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.99
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.98
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.97
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.97
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.96
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.93
KOG1125	579	consensus TPR repeat-containing protein [General f	98.93
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.9
KOG1126	638	consensus DNA-binding cell division cycle control	98.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.9
PRK11189	296	lipoprotein NlpI; Provisional	98.9
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.86
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.85
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.85
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.85
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.84
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.81
PRK10803	263	tol-pal system protein YbgF; Provisional	98.81
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.8
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.79
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.79
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.79
PF13371	73	TPR_9: Tetratricopeptide repeat	98.77
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.76
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.75
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.74
PLN02789	320	farnesyltranstransferase	98.7
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.69
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.68
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.68
PLN02789	320	farnesyltranstransferase	98.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.67
KOG4234	271	consensus TPR repeat-containing protein [General f	98.67
PF13371	73	TPR_9: Tetratricopeptide repeat	98.66
PRK15331	165	chaperone protein SicA; Provisional	98.66
KOG2076	895	consensus RNA polymerase III transcription factor	98.66
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.64
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.63
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.62
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.61
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.6
PRK11906	458	transcriptional regulator; Provisional	98.59
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.57
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.57
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.51
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.51
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.49
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.46
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.46
PF12688	120	TPR_5: Tetratrico peptide repeat	98.45
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.4
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.39
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.38
PRK11906	458	transcriptional regulator; Provisional	98.38
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.38
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.36
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.35
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.35
PRK14574	822	hmsH outer membrane protein; Provisional	98.35
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.34
PRK14574	822	hmsH outer membrane protein; Provisional	98.34
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.34
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.32
KOG1125	579	consensus TPR repeat-containing protein [General f	98.32
KOG0553	304	consensus TPR repeat-containing protein [General f	98.31
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.3
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.3
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.28
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.27
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.27
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.22
KOG2076	895	consensus RNA polymerase III transcription factor	98.22
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.22
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.21
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.2
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.18
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.18
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.16
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.16
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.16
PF13512	142	TPR_18: Tetratricopeptide repeat	98.15
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.12
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.12
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.11
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.07
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.07
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.06
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.03
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.03
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.0
PF13431	34	TPR_17: Tetratricopeptide repeat	98.0
PF13428	44	TPR_14: Tetratricopeptide repeat	98.0
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.98
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.96
PF13431	34	TPR_17: Tetratricopeptide repeat	97.94
PRK10803	263	tol-pal system protein YbgF; Provisional	97.94
KOG4555	175	consensus TPR repeat-containing protein [Function	97.93
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.92
KOG1129	478	consensus TPR repeat-containing protein [General f	97.91
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.91
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.9
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.89
KOG2003	840	consensus TPR repeat-containing protein [General f	97.86
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.86
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.83
KOG2003	840	consensus TPR repeat-containing protein [General f	97.82
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.82
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.79
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.79
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.77
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.76
PRK15331	165	chaperone protein SicA; Provisional	97.75
PF12688	120	TPR_5: Tetratrico peptide repeat	97.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.7
KOG1129	478	consensus TPR repeat-containing protein [General f	97.68
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.67
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.65
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.62
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.61
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.6
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.6
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.59
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.59
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.58
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.58
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.53
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.53
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.53
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.51
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.43
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.38
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.37
PF13428	44	TPR_14: Tetratricopeptide repeat	97.37
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.35
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.33
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.3
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.29
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.26
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.22
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.22
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.2
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.2
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.14
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.12
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.06
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.06
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.0
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.95
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.89
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.82
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.81
PF13512	142	TPR_18: Tetratricopeptide repeat	96.8
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.75
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.74
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.68
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.68
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.64
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.59
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.57
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.56
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.51
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.49
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.49
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.48
PLN03077	857	Protein ECB2; Provisional	96.48
KOG1310	758	consensus WD40 repeat protein [General function pr	96.46
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.38
PLN03218	1060	maturation of RBCL 1; Provisional	96.36
PRK10941	269	hypothetical protein; Provisional	96.36
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.31
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.3
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.27
KOG4234	271	consensus TPR repeat-containing protein [General f	96.26
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.23
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.22
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.17
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.17
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.17
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.17
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.17
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.15
PLN03218	1060	maturation of RBCL 1; Provisional	96.15
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.15
KOG4555	175	consensus TPR repeat-containing protein [Function	96.13
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.13
PLN03077	857	Protein ECB2; Provisional	96.13
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.13
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.12
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.05
PRK04841	903	transcriptional regulator MalT; Provisional	96.0
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.99
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.98
PRK10941	269	hypothetical protein; Provisional	95.98
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.91
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.89
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.88
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.86
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.7
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.68
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.67
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.6
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.57
PRK04841	903	transcriptional regulator MalT; Provisional	95.53
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.52
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.51
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.48
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.43
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.43
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.42
KOG1586	288	consensus Protein required for fusion of vesicles	95.35
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.25
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.24
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.11
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.08
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.06
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	94.95
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.87
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.87
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.56
KOG3364	149	consensus Membrane protein involved in organellar	94.52
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.48
KOG1585	308	consensus Protein required for fusion of vesicles	94.46
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.42
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.4
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.19
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.17
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.96
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.89
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	93.85
KOG4340	459	consensus Uncharacterized conserved protein [Funct	93.53
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.21
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.04
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.88
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.54
KOG1586	288	consensus Protein required for fusion of vesicles	92.47
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.34
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.07
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.07
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.05
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.98
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	91.78
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.64
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	91.59
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.51
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.51
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	91.42
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.93
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.91
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.69
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.69
KOG3364	149	consensus Membrane protein involved in organellar	90.64
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	90.44
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.43
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.39
KOG2471	696	consensus TPR repeat-containing protein [General f	90.24
KOG0529	421	consensus Protein geranylgeranyltransferase type I	90.22
COG2912	269	Uncharacterized conserved protein [Function unknow	90.17
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	89.84
KOG2471	696	consensus TPR repeat-containing protein [General f	89.81
KOG4814	872	consensus Uncharacterized conserved protein [Funct	89.78
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.66
COG3898	531	Uncharacterized membrane-bound protein [Function u	89.66
KOG1258	577	consensus mRNA processing protein [RNA processing	89.63
KOG2300	629	consensus Uncharacterized conserved protein [Funct	89.59
COG2912	269	Uncharacterized conserved protein [Function unknow	89.49
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	89.09
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	89.0
KOG2047	835	consensus mRNA splicing factor [RNA processing and	88.76
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.64
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.34
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	87.88
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	87.86
KOG1258	577	consensus mRNA processing protein [RNA processing	87.53
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.36
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	86.87
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.68
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	86.54
KOG2422	665	consensus Uncharacterized conserved protein [Funct	86.52
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	85.61
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	84.88
PLN03138	796	Protein TOC75; Provisional	83.35
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.27
KOG1585	308	consensus Protein required for fusion of vesicles	82.23
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	82.15
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	82.07
COG4907	595	Predicted membrane protein [Function unknown]	81.62
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	81.41
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.21
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	81.0
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.52

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.49  E-value=2.5e-13  Score=109.18  Aligned_cols=94  Identities=12%  Similarity=0.068  Sum_probs=87.1

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+...|++++|+.+|++++.++|.+..++.++|.++. ..|++++|+..|+++++++|+++.+++.+|.++.. .|+++
T Consensus        32 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~  109 (144)
T PRK15359         32 YASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPG  109 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHH
Confidence            34456789999999999999999999999999996666 58999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+..|+++++++|++
T Consensus       110 eAi~~~~~Al~~~p~~  125 (144)
T PRK15359        110 LAREAFQTAIKMSYAD  125 (144)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999986

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.49  E-value=9.8e-14  Score=123.39  Aligned_cols=90  Identities=20%  Similarity=0.278  Sum_probs=85.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      .+++|.+|+..|.+||+++|.|+.+|.|+|.+|. +++.|+.|++.|+.||.+||+...+|.++|.+++. +|++++|++
T Consensus        93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~  170 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIE  170 (304)
T ss_pred             HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHH
Confidence            3579999999999999999999999999997666 69999999999999999999999999999987777 999999999


Q ss_pred             HHHHHHHhCCCC
Q 027439          211 YFDQAVKAAPDD  222 (223)
Q Consensus       211 ~fekAL~l~Pdn  222 (223)
                      .|+|||+++|+|
T Consensus       171 aykKaLeldP~N  182 (304)
T KOG0553|consen  171 AYKKALELDPDN  182 (304)
T ss_pred             HHHhhhccCCCc
Confidence            999999999986

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.42  E-value=1.7e-12  Score=109.79  Aligned_cols=96  Identities=16%  Similarity=0.219  Sum_probs=83.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD--LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gd--yeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G  203 (223)
                      |++|...+++++|+.+|+++++++|+++.++.++|.+++...++  +++|.++++++++.+|+++.+++.+|..++. .|
T Consensus        80 g~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g  158 (198)
T PRK10370         80 GEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QA  158 (198)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cC
Confidence            45667788999999999999999999999999999776555676  5999999999999999999999999988887 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++++|+.+|+++++++|.+
T Consensus       159 ~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        159 DYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             CHHHHHHHHHHHHhhCCCC
Confidence            9999999999999988754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.37  E-value=5.7e-12  Score=97.89  Aligned_cols=94  Identities=14%  Similarity=0.073  Sum_probs=87.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...+++++|+.+|++++..+|.++.++.++|.+++ .++++++|+.+|++++..+|+++.+++.+|.+++. .|+++
T Consensus        25 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~  102 (135)
T TIGR02552        25 YNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPE  102 (135)
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHH
Confidence            44566789999999999999999999999999997776 58999999999999999999999999999988887 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++++|++
T Consensus       103 ~A~~~~~~al~~~p~~  118 (135)
T TIGR02552       103 SALKALDLAIEICGEN  118 (135)
T ss_pred             HHHHHHHHHHHhcccc
Confidence            9999999999999976

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.35  E-value=8.1e-12  Score=114.40  Aligned_cols=92  Identities=18%  Similarity=0.205  Sum_probs=86.0

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      +...++|++|+.+|+++++++|+++.++.++|.++. .++++++|+..+++|+.++|+++.+++.+|.+++. .|++++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHH
Confidence            445689999999999999999999999999997666 58999999999999999999999999999988887 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      +.+|+++++++|++
T Consensus        90 ~~~~~~al~l~P~~  103 (356)
T PLN03088         90 KAALEKGASLAPGD  103 (356)
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999999986

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.33  E-value=1.4e-11  Score=109.68  Aligned_cols=94  Identities=11%  Similarity=0.045  Sum_probs=86.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...|++++|+..|+++++++|+++.+++++|.++. ..+++++|+..|+++++++|++..++..+|.+++. .|+++
T Consensus        72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~  149 (296)
T PRK11189         72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYE  149 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHH
Confidence            35566789999999999999999999999999996555 68999999999999999999999999999988887 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+..|+++++++|++
T Consensus       150 eA~~~~~~al~~~P~~  165 (296)
T PRK11189        150 LAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999986

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.24  E-value=4.1e-11  Score=103.66  Aligned_cols=89  Identities=21%  Similarity=0.268  Sum_probs=78.9

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      --|...||+..|.+.++++|+.||++..+|..+| ++|.+.|+.+.|.+.|++|+.++|++++++.+||+++.. +|+++
T Consensus        43 l~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A-~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~  120 (250)
T COG3063          43 LGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPE  120 (250)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChH
Confidence            3456678999999999999999999999999999 677788999999999999999999999999999998888 88999


Q ss_pred             HHHHHHHHHHH
Q 027439          207 RAESYFDQAVK  217 (223)
Q Consensus       207 eAi~~fekAL~  217 (223)
                      +|..+|++|+.
T Consensus       121 eA~q~F~~Al~  131 (250)
T COG3063         121 EAMQQFERALA  131 (250)
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.24  E-value=8.9e-11  Score=96.39  Aligned_cols=87  Identities=9%  Similarity=-0.044  Sum_probs=80.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      ..|++++|+..|+.+..+||.+...|.+||.++. .+++|++|+..|.+|+.++|+|+..+++.|.+++. .|+.+.|+.
T Consensus        47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A~~  124 (157)
T PRK15363         47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYAIK  124 (157)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHH
Confidence            3579999999999999999999999999995555 68999999999999999999999999999987777 999999999


Q ss_pred             HHHHHHHhC
Q 027439          211 YFDQAVKAA  219 (223)
Q Consensus       211 ~fekAL~l~  219 (223)
                      .|+.|+..-
T Consensus       125 aF~~Ai~~~  133 (157)
T PRK15363        125 ALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHh
Confidence            999999763

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.22  E-value=2e-10  Score=97.19  Aligned_cols=90  Identities=12%  Similarity=0.189  Sum_probs=82.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD--ASRAE  209 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~--~eeAi  209 (223)
                      .++.++++..|+++++.+|+|+..|..+|.++. ..+++++|+..|++|++++|+++.++..+|.+++...|+  +++|+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            568899999999999999999999999996665 689999999999999999999999999999876554787  59999


Q ss_pred             HHHHHHHHhCCCC
Q 027439          210 SYFDQAVKAAPDD  222 (223)
Q Consensus       210 ~~fekAL~l~Pdn  222 (223)
                      ..|+++++++|++
T Consensus       131 ~~l~~al~~dP~~  143 (198)
T PRK10370        131 EMIDKALALDANE  143 (198)
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999999986

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.21  E-value=8.6e-11  Score=81.74  Aligned_cols=68  Identities=26%  Similarity=0.327  Sum_probs=62.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 027439          151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-DASRAESYFDQAVKAAP  220 (223)
Q Consensus       151 ~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-~~eeAi~~fekAL~l~P  220 (223)
                      .++.+|..+|..++ .+++|++|+.+|+++++++|+++.++..+|.+++. .+ ++++|+..|+++++++|
T Consensus         1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            36889999997777 58999999999999999999999999999988777 88 79999999999999998

...

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.21  E-value=4.1e-11  Score=103.63  Aligned_cols=95  Identities=24%  Similarity=0.328  Sum_probs=85.2

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQS  201 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~  201 (223)
                      .+..|.+.|+.+.|.+.|++|+.++|++.++++|||.||+. +|+|++|..+|++|++ +|..   ...+-+++.+.++ 
T Consensus        75 ~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~-  151 (250)
T COG3063          75 RAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALK-  151 (250)
T ss_pred             HHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhh-
Confidence            45778889999999999999999999999999999999995 8999999999999998 5654   5678888866666 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 027439          202 HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .|+++.|..+|+++++++|++
T Consensus       152 ~gq~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         152 AGQFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             cCCchhHHHHHHHHHHhCcCC
Confidence            999999999999999999975

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.21  E-value=1.1e-10  Score=80.43  Aligned_cols=93  Identities=18%  Similarity=0.225  Sum_probs=84.1

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...+++++|+..++++++..|.+..++..+|.++. ..+++++|+.+|++++...|.+..++..++.++.. .++++
T Consensus         8 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   85 (100)
T cd00189           8 NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYE   85 (100)
T ss_pred             HHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHH
Confidence            34556789999999999999999999999999997666 47999999999999999999999999999988777 99999


Q ss_pred             HHHHHHHHHHHhCCC
Q 027439          207 RAESYFDQAVKAAPD  221 (223)
Q Consensus       207 eAi~~fekAL~l~Pd  221 (223)
                      +|..++++++..+|+
T Consensus        86 ~a~~~~~~~~~~~~~  100 (100)
T cd00189          86 EALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHccCCC
Confidence            999999999998874

>PRK12370 invasion protein regulator; Provisional

Probab=99.15  E-value=3.5e-10  Score=108.90  Aligned_cols=89  Identities=16%  Similarity=0.167  Sum_probs=80.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      .+++++|+.+++++++++|+++.++..+|.++. .++++++|+.+|++|++++|+++.++..+|.++.. .|++++|+..
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~  394 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQT  394 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            356899999999999999999999999996555 58999999999999999999999999999988777 9999999999


Q ss_pred             HHHHHHhCCCC
Q 027439          212 FDQAVKAAPDD  222 (223)
Q Consensus       212 fekAL~l~Pdn  222 (223)
                      |+++++++|++
T Consensus       395 ~~~Al~l~P~~  405 (553)
T PRK12370        395 INECLKLDPTR  405 (553)
T ss_pred             HHHHHhcCCCC
Confidence            99999999975

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.15  E-value=6e-10  Score=83.52  Aligned_cols=94  Identities=15%  Similarity=0.149  Sum_probs=83.2

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQ  200 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~  200 (223)
                      ..+...+++++|+.+|+++++.+|++   ..++..+|.++. ..+++++|+.+|++++..+|++   +.++..++.++..
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~   88 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE   88 (119)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence            44566789999999999999999987   568889997766 5899999999999999999885   6788999988777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 027439          201 SHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       201 ~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                       .+++++|+.+|+++++..|++
T Consensus        89 -~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        89 -LGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             -hCChHHHHHHHHHHHHHCcCC
Confidence             999999999999999999986

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.14  E-value=3.3e-10  Score=109.87  Aligned_cols=95  Identities=20%  Similarity=0.211  Sum_probs=79.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...+++++|+.+|+++++++|.+..++.++|.++. .++++++|+.+|+++++++|+++.++..+|.+++. .|++
T Consensus       338 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~  415 (615)
T TIGR00990       338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEF  415 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence            445566788888999999988888888888888886665 47888888888888888888888888888877777 8888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++++|++
T Consensus       416 ~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       416 AQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             HHHHHHHHHHHHcCccC
Confidence            88888888888888875

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.13  E-value=3.2e-10  Score=109.31  Aligned_cols=98  Identities=17%  Similarity=0.303  Sum_probs=89.8

Q ss_pred             CCCccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439          122 DGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       122 ~~~gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~  201 (223)
                      .|-.+-.|..+|+.+-|+.+|+++++++|+.+.+++|+|+++.+ .|+..+|+.+|.+|+.++|++++++.++|+++.+ 
T Consensus       289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-  366 (966)
T KOG4626|consen  289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-  366 (966)
T ss_pred             ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-
Confidence            44466788889999999999999999999999999999999997 7999999999999999999999999999998888 


Q ss_pred             cCCHHHHHHHHHHHHHhCCC
Q 027439          202 HKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pd  221 (223)
                      ++.+++|...|++|++.+|+
T Consensus       367 ~~~~e~A~~ly~~al~v~p~  386 (966)
T KOG4626|consen  367 QGKIEEATRLYLKALEVFPE  386 (966)
T ss_pred             hccchHHHHHHHHHHhhChh
Confidence            99999999999999998885

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.12  E-value=3.8e-11  Score=115.61  Aligned_cols=96  Identities=20%  Similarity=0.220  Sum_probs=87.3

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      .|.+|.-++|+++|+++|++|+++||..+.++.-+|.-+. .+.+|++|..+|++||..+|.+.++|+.+|.++.+ +++
T Consensus       427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek  504 (638)
T KOG1126|consen  427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEK  504 (638)
T ss_pred             hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cch
Confidence            6788888999999999999999999999999988884444 57899999999999999999999999999988777 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      ++.|+.+|++|+++||.|
T Consensus       505 ~e~Ae~~fqkA~~INP~n  522 (638)
T KOG1126|consen  505 LEFAEFHFQKAVEINPSN  522 (638)
T ss_pred             hhHHHHHHHhhhcCCccc
Confidence            999999999999999976

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.09  E-value=3.1e-10  Score=82.43  Aligned_cols=81  Identities=19%  Similarity=0.311  Sum_probs=71.5

Q ss_pred             CCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~--n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      +++|++|+.+|+++++.+|.  +..++..+|.+++ +.++|++|+.++++ +..+|.+...++.+|.+++. +|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence            46899999999999999995  5677888998888 58999999999999 88899999999999988888 99999999


Q ss_pred             HHHHHH
Q 027439          210 SYFDQA  215 (223)
Q Consensus       210 ~~fekA  215 (223)
                      ..|++|
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999986

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.09  E-value=1.8e-10  Score=110.93  Aligned_cols=96  Identities=22%  Similarity=0.239  Sum_probs=86.8

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -+.+|.++|++++|+.+|++++++.|..++++.|+|..+.+ .|+...|+.+|.+||.++|..++++.++|.++-. .|+
T Consensus       394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke-~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD-sGn  471 (966)
T KOG4626|consen  394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE-MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD-SGN  471 (966)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH-hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc-cCC
Confidence            45677788999999999999999999999999999988885 7999999999999999999999999999965544 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      ..+|++.|+.||++.||.
T Consensus       472 i~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  472 IPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             cHHHHHHHHHHHccCCCC
Confidence            999999999999999873

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.09  E-value=7.5e-10  Score=107.35  Aligned_cols=94  Identities=13%  Similarity=0.186  Sum_probs=74.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      .+|...+++++|+.+|+++++++|+++.++.++|.+++ ..+++++|+.+|++++.++|++..++..+|.+++. +|+++
T Consensus       373 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~  450 (615)
T TIGR00990       373 SMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIA  450 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHH
Confidence            44555678888888888888888888888888886555 47888888888888888888888888888877666 88888


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|++++..+|++
T Consensus       451 eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       451 SSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            8888888888877764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.08  E-value=6.9e-10  Score=113.52  Aligned_cols=95  Identities=14%  Similarity=0.164  Sum_probs=78.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.++...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. .|++
T Consensus       616 A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~  693 (987)
T PRK09782        616 ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDM  693 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCH
Confidence            345566788888888888888888888888888886666 47888888888888888888888888888877766 8888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++++|++
T Consensus       694 ~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        694 AATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            88888888888888875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.06  E-value=1e-09  Score=88.19  Aligned_cols=82  Identities=11%  Similarity=0.114  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (223)
Q Consensus       136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA  215 (223)
                      .--+.+|+++++++|++   +.++|..+. ..|++++|+.+|++++.++|++..++..+|.++.. .|++++|+..|+++
T Consensus        10 ~~~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~A   84 (144)
T PRK15359         10 KIPEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHA   84 (144)
T ss_pred             CCHHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence            33568999999999996   456786676 48999999999999999999999999999988888 99999999999999


Q ss_pred             HHhCCCC
Q 027439          216 VKAAPDD  222 (223)
Q Consensus       216 L~l~Pdn  222 (223)
                      ++++|++
T Consensus        85 l~l~p~~   91 (144)
T PRK15359         85 LMLDASH   91 (144)
T ss_pred             HhcCCCC
Confidence            9999976

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.05  E-value=9.4e-10  Score=75.80  Aligned_cols=63  Identities=24%  Similarity=0.435  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       158 nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+|..++ ..++|++|+.+|+++++.+|+++.++..+|.+++. +|++++|+.+|+++++++|+|
T Consensus         2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence            4565555 47889999999999999999999999999988887 899999999999999888876

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=7.5e-10  Score=104.80  Aligned_cols=95  Identities=20%  Similarity=0.214  Sum_probs=87.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..++..+||..|+.+|.+||+.+|+++.+|.|+|. ++..++.+..|+..|+++++++|++...+.+-|.+++. ..+|
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAa-c~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~y  442 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAA-CYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEY  442 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHH-HHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHH
Confidence            345567789999999999999999999999999995 44479999999999999999999999999999988777 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|++.|+++++++|++
T Consensus       443 dkAleay~eale~dp~~  459 (539)
T KOG0548|consen  443 DKALEAYQEALELDPSN  459 (539)
T ss_pred             HHHHHHHHHHHhcCchh
Confidence            99999999999999975

>PRK12370 invasion protein regulator; Provisional

Probab=99.03  E-value=1.7e-09  Score=104.17  Aligned_cols=92  Identities=13%  Similarity=0.056  Sum_probs=82.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.++...+++++|+++|+++++++|+++.++.++|.++. ..|++++|+.+++++++++|+++.++..++.+++. .|++
T Consensus       345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~  422 (553)
T PRK12370        345 GLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGI  422 (553)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCH
Confidence            445566789999999999999999999999999997666 58999999999999999999998887777767777 8999


Q ss_pred             HHHHHHHHHHHHhC
Q 027439          206 SRAESYFDQAVKAA  219 (223)
Q Consensus       206 eeAi~~fekAL~l~  219 (223)
                      ++|+..+++++..+
T Consensus       423 eeA~~~~~~~l~~~  436 (553)
T PRK12370        423 DDAIRLGDELRSQH  436 (553)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999875

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.03  E-value=2.1e-09  Score=88.03  Aligned_cols=95  Identities=19%  Similarity=0.324  Sum_probs=81.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~  202 (223)
                      |..|...+++++|+.+|++++++.|+.   ..++.++|.++. ..+++++|+.++++++..+|++...+..++.++.. .
T Consensus        42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~  119 (172)
T PRK02603         42 GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-R  119 (172)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-c
Confidence            455667789999999999999987763   578999995555 68999999999999999999999999999987766 7


Q ss_pred             CC--------------HHHHHHHHHHHHHhCCCC
Q 027439          203 KD--------------ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 G~--------------~eeAi~~fekAL~l~Pdn  222 (223)
                      ++              +++|+.++++++..+|+|
T Consensus       120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             CChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            76              678889999999989986

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.03  E-value=3e-09  Score=86.47  Aligned_cols=91  Identities=26%  Similarity=0.386  Sum_probs=80.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +..|...+++++|+..|+++++.+|.+..++..+|.++. ..+++++|+++++++++.+|++..++..++.++.. .|++
T Consensus        38 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~  115 (234)
T TIGR02521        38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKY  115 (234)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccH
Confidence            455666789999999999999999999999999996655 58999999999999999999999999999987777 8999


Q ss_pred             HHHHHHHHHHHHh
Q 027439          206 SRAESYFDQAVKA  218 (223)
Q Consensus       206 eeAi~~fekAL~l  218 (223)
                      ++|+.+|++++..
T Consensus       116 ~~A~~~~~~~~~~  128 (234)
T TIGR02521       116 EQAMQQFEQAIED  128 (234)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998874

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.01  E-value=3.9e-09  Score=85.98  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=78.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW---  199 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~---  199 (223)
                      |.++..++++++|+.+|++++.+.|+.   +.++.++|.++. ..+++++|+.+|++|+.++|.+...+..++.++.   
T Consensus        42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            445566789999999999999997763   458999995555 6899999999999999999999999999998877   


Q ss_pred             ----HHcCCHH-------HHHHHHHHHHHhCCCC
Q 027439          200 ----QSHKDAS-------RAESYFDQAVKAAPDD  222 (223)
Q Consensus       200 ----~~~G~~e-------eAi~~fekAL~l~Pdn  222 (223)
                          . .|+++       +|+.+|++++..+|++
T Consensus       121 ~~~~~-~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        121 EQAIE-QGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHH-cccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                5 67766       6666677778888864

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.99  E-value=3.5e-09  Score=82.07  Aligned_cols=82  Identities=15%  Similarity=0.056  Sum_probs=76.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       140 ~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      +.|+++++.+|++..+...+|..++ ..+++++|.+++++++..+|+++.++..+|.+++. .+++++|+.+|+++++.+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            6799999999999999999997666 58999999999999999999999999999988888 899999999999999999


Q ss_pred             CCCC
Q 027439          220 PDDW  223 (223)
Q Consensus       220 Pdn~  223 (223)
                      |+++
T Consensus        82 p~~~   85 (135)
T TIGR02552        82 PDDP   85 (135)
T ss_pred             CCCh
Confidence            9864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=3e-09  Score=98.15  Aligned_cols=96  Identities=17%  Similarity=0.139  Sum_probs=84.5

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN  189 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n---------------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~  189 (223)
                      =|..|++.++|..|...|++++..-+..               ..++.|+| +++.++++|.+|+..|.++|+++|+|..
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA-~c~lKl~~~~~Ai~~c~kvLe~~~~N~K  292 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLA-ACYLKLKEYKEAIESCNKVLELDPNNVK  292 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHH-HHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence            4567788899999999999999864321               34688999 4555799999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +++..|.++.. .++|+.|+..|++|++++|+|
T Consensus       293 ALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  293 ALYRRGQALLA-LGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCc
Confidence            99999999888 999999999999999999997

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.97  E-value=5.5e-10  Score=97.70  Aligned_cols=97  Identities=23%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -+.+|...|++++|+.+|+++++.+|+|..++..++.++. ..++++++.+.+.+.....|+|+.++..+|.+++. .|+
T Consensus       152 ~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~  229 (280)
T PF13429_consen  152 LAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGR  229 (280)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-ccc
Confidence            3456677788999999999999999999998888886555 46888888888888877778888888888877776 888


Q ss_pred             HHHHHHHHHHHHHhCCCCC
Q 027439          205 ASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn~  223 (223)
                      +++|+.+|+++++.+|+|+
T Consensus       230 ~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  230 YEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             HHHHHHHHHHHHHHSTT-H
T ss_pred             ccccccccccccccccccc
Confidence            8888888888888888763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.97  E-value=7.2e-09  Score=84.22  Aligned_cols=95  Identities=21%  Similarity=0.307  Sum_probs=63.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--P~d~~~l~~lA~ll~~~~G  203 (223)
                      +.+|...+++++|+++|+++++.+|.+..++.+++.++. ..+++++|+.+|++++...  +.....+..++.+++. .|
T Consensus        72 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g  149 (234)
T TIGR02521        72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AG  149 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cC
Confidence            345556677888888888888888877777777775554 4677777777777776642  3445566666655555 67


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++++|+.+|+++++.+|++
T Consensus       150 ~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       150 DFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             CHHHHHHHHHHHHHhCcCC
Confidence            7777777777776666653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=5e-09  Score=93.45  Aligned_cols=97  Identities=20%  Similarity=0.210  Sum_probs=87.5

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g--dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~  202 (223)
                      -|+.|..++++..|...|++++++.|+|+.++..||.+++...+  ...+|..++++++.+||+|..+++.+|..++. .
T Consensus       162 Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~  240 (287)
T COG4235         162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-Q  240 (287)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-c
Confidence            46778889999999999999999999999999999999886443  46889999999999999999999999988888 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 027439          203 KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 G~~eeAi~~fekAL~l~Pdn  222 (223)
                      |+|.+|+..|++.+...|.|
T Consensus       241 g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         241 GDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             ccHHHHHHHHHHHHhcCCCC
Confidence            99999999999999998764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.93  E-value=1.3e-09  Score=75.13  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=54.5

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG  188 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~  188 (223)
                      ..|...+++++|+.+|+++++.+|+++.++..+|.++. .+|++++|+.+|+++++++|+++
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            45667789999999999999999999999999997777 58999999999999999999986

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=1.3e-09  Score=103.90  Aligned_cols=95  Identities=15%  Similarity=0.055  Sum_probs=85.1

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -|-+|-..++|++|+.||+.||..+|+|...|+.||..+. .-.+.++|+..|+||+++.|.+..+++++|..+.. +|.
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~  513 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGA  513 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhh
Confidence            4556777889999999999999999999999999996665 35689999999999999999999999999966666 999


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 027439          205 ASRAESYFDQAVKAAPD  221 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pd  221 (223)
                      |++|+.+|-.||.+.+.
T Consensus       514 ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  514 YKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHHHHHHHhhhc
Confidence            99999999999988654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.93  E-value=5.8e-09  Score=103.33  Aligned_cols=91  Identities=9%  Similarity=0.050  Sum_probs=83.0

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      ...|.+++|+..++++++++|++..++.+++.++. +++++++|+..+++++..+|+++.+++.+|.++.. .|++++|+
T Consensus        97 ~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~  174 (694)
T PRK15179         97 EAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQAD  174 (694)
T ss_pred             HHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHH
Confidence            44589999999999999999999999999998888 58999999999999999999999999999977776 99999999


Q ss_pred             HHHHHHHHhCCCC
Q 027439          210 SYFDQAVKAAPDD  222 (223)
Q Consensus       210 ~~fekAL~l~Pdn  222 (223)
                      .+|+++++.+|++
T Consensus       175 ~~y~~~~~~~p~~  187 (694)
T PRK15179        175 ACFERLSRQHPEF  187 (694)
T ss_pred             HHHHHHHhcCCCc
Confidence            9999999988763

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.90  E-value=9.6e-09  Score=101.03  Aligned_cols=92  Identities=12%  Similarity=0.106  Sum_probs=51.6

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLK----AEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyee----A~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      +...+++++|+..|+++++.+|+++.++.++|..+. ..|++++    |+.+|+++++++|+++.++..+|.++.. .|+
T Consensus       222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~  299 (656)
T PRK15174        222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQ  299 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCC
Confidence            334455556666666666555655555555554444 3455553    5555555555555555555555555554 555


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      +++|+.+|+++++++|++
T Consensus       300 ~~eA~~~l~~al~l~P~~  317 (656)
T PRK15174        300 NEKAIPLLQQSLATHPDL  317 (656)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            555555555555555543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.90  E-value=1e-08  Score=100.86  Aligned_cols=95  Identities=18%  Similarity=0.142  Sum_probs=76.2

Q ss_pred             cccccCCCChHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNS----TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       126 g~~Y~~~gd~~e----A~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~  201 (223)
                      |..|...+++++    |+.+|+++++++|+++.++.++|.++. .++++++|+.++++++.++|+++.++..++.++.. 
T Consensus       253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-  330 (656)
T PRK15174        253 GLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-  330 (656)
T ss_pred             HHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence            344555667764    788888888888888888888886666 47888888888888888888888888888877666 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 027439          202 HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .|++++|+..|++++..+|++
T Consensus       331 ~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        331 VGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             CCCHHHHHHHHHHHHHhCccc
Confidence            888888888888888888764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=2.2e-09  Score=103.62  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=81.5

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      .|+-+....+|+.|..+|+.|+..+|.+-.+|+-+|.++. ++++++.|+-+|++|++++|.+..++..++.++.. .|+
T Consensus       461 lGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~  538 (638)
T KOG1126|consen  461 LGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKR  538 (638)
T ss_pred             cCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhh
Confidence            5566666788999999999999999999999999995555 68899999999999999999998888888876666 899


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      .++|+.+|++|+.++|.|
T Consensus       539 ~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  539 KDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             hhHHHHHHHHHHhcCCCC
Confidence            999999999999988865

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.90  E-value=1.6e-08  Score=103.66  Aligned_cols=87  Identities=18%  Similarity=0.270  Sum_probs=81.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      |++++|+.+|+++++++|+ +.++.++|.++. +.+++++|+.+|+++++++|+++.++..+|.++.. .|++++|+..|
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            8999999999999999996 999999996666 68999999999999999999999999999988887 99999999999


Q ss_pred             HHHHHhCCCC
Q 027439          213 DQAVKAAPDD  222 (223)
Q Consensus       213 ekAL~l~Pdn  222 (223)
                      ++|++++|++
T Consensus       667 ~~AL~l~P~~  676 (987)
T PRK09782        667 ERAHKGLPDD  676 (987)
T ss_pred             HHHHHhCCCC
Confidence            9999999986

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.90  E-value=1.4e-08  Score=90.45  Aligned_cols=96  Identities=16%  Similarity=0.152  Sum_probs=78.1

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -|..|...+++++|++.|+++++++|++..++.++|.+++ ..+++++|++.|+++++++|+++... .+..++.. .++
T Consensus       104 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~-~~~  180 (296)
T PRK11189        104 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAES-KLD  180 (296)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHc-cCC
Confidence            3456677899999999999999999999999999997777 58999999999999999999998432 22223334 789


Q ss_pred             HHHHHHHHHHHHHh-CCCCC
Q 027439          205 ASRAESYFDQAVKA-APDDW  223 (223)
Q Consensus       205 ~eeAi~~fekAL~l-~Pdn~  223 (223)
                      +++|+..|++++.. +|+.|
T Consensus       181 ~~~A~~~l~~~~~~~~~~~~  200 (296)
T PRK11189        181 PKQAKENLKQRYEKLDKEQW  200 (296)
T ss_pred             HHHHHHHHHHHHhhCCcccc
Confidence            99999999887655 44444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.86  E-value=2.9e-09  Score=73.95  Aligned_cols=59  Identities=24%  Similarity=0.264  Sum_probs=53.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSP  185 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g-dyeeA~~~~ekAL~ldP  185 (223)
                      |..|...+++++|+.+|+++++++|+++.++.++|.++. .++ ++++|+++|+++++++|
T Consensus        10 g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   10 GQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence            345667889999999999999999999999999996666 578 79999999999999998

...

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.85  E-value=1.5e-08  Score=88.89  Aligned_cols=92  Identities=14%  Similarity=0.089  Sum_probs=83.1

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      ....+|+|.+|+..++++..++|+|..+|+.+| +.+.+.|+++.|...|.+|+++.|+++.++.+++..++. .|+++.
T Consensus       109 ~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg-aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~  186 (257)
T COG5010         109 NQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG-AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLED  186 (257)
T ss_pred             HHHHhcchHHHHHHHHHHhccCCCChhhhhHHH-HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHH
Confidence            334578999999999999999999999999999 555579999999999999999999999999999988888 999999


Q ss_pred             HHHHHHHHHHhCCC
Q 027439          208 AESYFDQAVKAAPD  221 (223)
Q Consensus       208 Ai~~fekAL~l~Pd  221 (223)
                      |..++.++....+.
T Consensus       187 A~~lll~a~l~~~a  200 (257)
T COG5010         187 AETLLLPAYLSPAA  200 (257)
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999776553

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.85  E-value=8.8e-09  Score=71.18  Aligned_cols=65  Identities=18%  Similarity=0.235  Sum_probs=57.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD  196 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~  196 (223)
                      ..+++++|+.+|+++++.+|+|..++..+|.++. ..|++++|...+++++..+|+++.++..++.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3579999999999999999999999999997777 5899999999999999999999888887774

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.85  E-value=1.6e-08  Score=85.78  Aligned_cols=94  Identities=17%  Similarity=0.200  Sum_probs=81.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQ  200 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~---~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~---~l~~lA~ll~~  200 (223)
                      ..|...+++++|+..|+++++.+|+++   .++..+|.+++ ..+++++|+..|+++++.+|+++.   +++.++.+++.
T Consensus        41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~  119 (235)
T TIGR03302        41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN  119 (235)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence            345567899999999999999999886   57789997666 589999999999999999998887   68888877766


Q ss_pred             Hc--------CCHHHHHHHHHHHHHhCCCC
Q 027439          201 SH--------KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       201 ~~--------G~~eeAi~~fekAL~l~Pdn  222 (223)
                       .        +++++|+..|++++..+|++
T Consensus       120 -~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302       120 -QIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             -hcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence             4        78999999999999999986

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.84  E-value=2.3e-08  Score=96.51  Aligned_cols=94  Identities=24%  Similarity=0.366  Sum_probs=71.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +.+|...+++++|+.+|+++++.+|+++.++.+++..+. ..++ ++|+.++++++.+.|+++.++..+|.+++. .|++
T Consensus       777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~  853 (899)
T TIGR02917       777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEA  853 (899)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCH
Confidence            345555677788888888888888888877777775444 4666 778888888888888888888788877666 8888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus       854 ~~A~~~~~~a~~~~~~~  870 (899)
T TIGR02917       854 DRALPLLRKAVNIAPEA  870 (899)
T ss_pred             HHHHHHHHHHHhhCCCC
Confidence            88888888888887764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.81  E-value=3.2e-08  Score=102.78  Aligned_cols=53  Identities=15%  Similarity=0.228  Sum_probs=25.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       168 gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +++++|+++|+++++++|+++.+++.+|.+++. .|++++|+..|+++++.+|+
T Consensus       475 g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~-~G~~~~A~~~l~~al~~~P~  527 (1157)
T PRK11447        475 GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ-AGQRSQADALMRRLAQQKPN  527 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence            444445555555555555555444444444444 45555555555555444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.81  E-value=6.5e-08  Score=85.59  Aligned_cols=91  Identities=15%  Similarity=0.268  Sum_probs=81.1

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~---d~~~l~~lA~ll~~~~G  203 (223)
                      ...++|++|+..|++.++..|++   +.+++.+|.+++ ..++|++|+..|++++...|+   .+++++.+|.++.. .|
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g  231 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KG  231 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cC
Confidence            34589999999999999999998   578999997777 589999999999999998887   47888888977777 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++++|+.+|+++++..|+.
T Consensus       232 ~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        232 DTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             CHHHHHHHHHHHHHHCcCC
Confidence            9999999999999999874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.80  E-value=3.8e-08  Score=98.26  Aligned_cols=94  Identities=16%  Similarity=0.085  Sum_probs=84.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +.+|...+++++|+++|+++++++|.++.++..++.++. ..+++++|+.+++++++.+|+++. +..+|.++.. .|++
T Consensus        56 A~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~  132 (765)
T PRK10049         56 AVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRH  132 (765)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCH
Confidence            345566789999999999999999999999999996665 589999999999999999999999 9999977777 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|+++++++|++
T Consensus       133 ~~Al~~l~~al~~~P~~  149 (765)
T PRK10049        133 WDELRAMTQALPRAPQT  149 (765)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999986

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.79  E-value=9.3e-09  Score=93.94  Aligned_cols=96  Identities=18%  Similarity=0.109  Sum_probs=88.0

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -|.-|+.+|.|++|+.||.+++.++|.|+..+.|+|.+|+ +++.|..|+.-|..|+.+|.....++...+.+-.. +|+
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~  180 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGN  180 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-Hhh
Confidence            3456888999999999999999999999999999996666 68999999999999999999999999999977666 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      ..+|...++.+|++.|++
T Consensus       181 ~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHHHhHHHHHhhCccc
Confidence            999999999999999975

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.79  E-value=4.3e-08  Score=94.69  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=80.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+..|+++++.+|++..++..+|..+. ..+++++|+..++++++.+|++..++..++.+++. .|++
T Consensus       132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~  209 (899)
T TIGR02917       132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNI  209 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCH
Confidence            455566788999999999999999999888888886666 47899999999999999999998888888877777 8999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|++++..+|++
T Consensus       210 ~~A~~~~~~a~~~~p~~  226 (899)
T TIGR02917       210 ELALAAYRKAIALRPNN  226 (899)
T ss_pred             HHHHHHHHHHHhhCCCC
Confidence            99999999998888865

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.79  E-value=4.1e-08  Score=98.00  Aligned_cols=94  Identities=19%  Similarity=0.187  Sum_probs=86.4

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+...+++++|+++|+++++..|+++.++.++|.++. ..+++++|++.+++|++++|++..++..+|.++.. .++++
T Consensus       367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~-~~~~~  444 (765)
T PRK10049        367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD-LQEWR  444 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCCHH
Confidence            35566789999999999999999999999999996555 68999999999999999999999999999987776 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+..++++++..|+|
T Consensus       445 ~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        445 QMDVLTDDVVAREPQD  460 (765)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999987

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.77  E-value=3.5e-08  Score=69.08  Aligned_cols=68  Identities=22%  Similarity=0.245  Sum_probs=57.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      ..|...++|++|+++++++++++|+++..+..+|.+++ ..|++++|++.|+++++.+|+++.+....+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            35667789999999999999999999999999996666 589999999999999999998887776554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.76  E-value=4.5e-08  Score=101.66  Aligned_cols=95  Identities=17%  Similarity=0.170  Sum_probs=86.9

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -+.+|...+++++|+.+|+++++.+|+++.++.+++.++. ..+++++|+++|++++..+|+++.++..+|.++.. .|+
T Consensus       609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~-~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~-~g~  686 (1157)
T PRK11447        609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDI-AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA-LGD  686 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh-CCC
Confidence            4567788899999999999999999999999999997666 58999999999999999999999999999987777 999


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 027439          205 ASRAESYFDQAVKAAPD  221 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pd  221 (223)
                      +++|+.+|++++...|+
T Consensus       687 ~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        687 TAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             HHHHHHHHHHHhhhCcc
Confidence            99999999999988654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.75  E-value=8.4e-08  Score=86.51  Aligned_cols=94  Identities=17%  Similarity=0.145  Sum_probs=70.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-GNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d-~~~l~~lA~ll~~~~G~~  205 (223)
                      ..|...+++++|+.+|+++++.+|++..++..+|.++. ..+++++|++++++++..+|++ ..++..++.++.. .|++
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~  265 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDE  265 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCH
Confidence            34455678888888888888888888888888885555 4788888888888888877765 3456667766666 7888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..++++++..|++
T Consensus       266 ~~A~~~l~~~~~~~p~~  282 (389)
T PRK11788        266 AEGLEFLRRALEEYPGA  282 (389)
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            88888888887777753

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.74  E-value=6.3e-08  Score=96.05  Aligned_cols=90  Identities=11%  Similarity=0.021  Sum_probs=82.2

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      ...+.+++++|+..++++++.+|+++.+++.+|.++. ..|+|++|+++|++++..+|++++++..+|.++.. .|+.++
T Consensus       129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G~~~~  206 (694)
T PRK15179        129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RGALWR  206 (694)
T ss_pred             HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHH
Confidence            3345689999999999999999999999999997666 58999999999999999999999999999976666 999999


Q ss_pred             HHHHHHHHHHhC
Q 027439          208 AESYFDQAVKAA  219 (223)
Q Consensus       208 Ai~~fekAL~l~  219 (223)
                      |...|++|++..
T Consensus       207 A~~~~~~a~~~~  218 (694)
T PRK15179        207 ARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999874

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=3.9e-08  Score=92.34  Aligned_cols=93  Identities=17%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      .|.-.++.++|+.+|++|+++||....+|.-+|--+. ..++...|+..|++|++++|.|..+|+.+|.++-. .+.+.=
T Consensus       339 YYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~Y  416 (559)
T KOG1155|consen  339 YYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFY  416 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHH
Confidence            3444456677777777777777777777777774333 35677777777777777777777777777755444 666666


Q ss_pred             HHHHHHHHHHhCCCC
Q 027439          208 AESYFDQAVKAAPDD  222 (223)
Q Consensus       208 Ai~~fekAL~l~Pdn  222 (223)
                      |+.+|++|.++-|+|
T Consensus       417 aLyYfqkA~~~kPnD  431 (559)
T KOG1155|consen  417 ALYYFQKALELKPND  431 (559)
T ss_pred             HHHHHHHHHhcCCCc
Confidence            777777777776665

>PLN02789 farnesyltranstransferase

Probab=98.70  E-value=1.1e-07  Score=86.44  Aligned_cols=87  Identities=9%  Similarity=0.074  Sum_probs=74.2

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDL--LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdy--eeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      ++++++.+++++++.+|++..+|..++.++. ..++.  ++++.+++++++.+|+|..+|...++++.. .+++++|+++
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~  164 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEY  164 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHH
Confidence            5788999999999999999999998885554 46653  778889999999999999999999988777 8889999999


Q ss_pred             HHHHHHhCCCC
Q 027439          212 FDQAVKAAPDD  222 (223)
Q Consensus       212 fekAL~l~Pdn  222 (223)
                      ++++++.+|+|
T Consensus       165 ~~~~I~~d~~N  175 (320)
T PLN02789        165 CHQLLEEDVRN  175 (320)
T ss_pred             HHHHHHHCCCc
Confidence            99999998876

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.69  E-value=1.1e-07  Score=80.49  Aligned_cols=96  Identities=14%  Similarity=0.016  Sum_probs=79.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-------hCCHHHHHHHHHHHHHhCCCCHHHH----
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPL---LLSNYARFLKEA-------RGDLLKAEEYCARAILMSPNDGNVL----  191 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~---~l~nlA~~l~~~-------~gdyeeA~~~~ekAL~ldP~d~~~l----  191 (223)
                      |.+|...+++++|+..|+++++.+|+++.   ++..+|.+++..       .+++++|++.|++++..+|++..++    
T Consensus        77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302        77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            35667788999999999999999998876   688888766642       1689999999999999999987553    


Q ss_pred             -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          192 -------------SMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       192 -------------~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                                   ..+|.+++. .|++++|+..|+++++..|++
T Consensus       157 ~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~  199 (235)
T TIGR03302       157 RMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDT  199 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCC
Confidence                         245666666 999999999999999998763

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.68  E-value=1.2e-07  Score=85.55  Aligned_cols=93  Identities=16%  Similarity=0.150  Sum_probs=69.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNP-----LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~-----~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~  201 (223)
                      .+|...+++++|+++|+++++.+|.+.     .++..+|..+. .++++++|+.+|+++++.+|++..++..++.++.. 
T Consensus       149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-  226 (389)
T PRK11788        149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALA-  226 (389)
T ss_pred             HHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-
Confidence            345556788888888888887777653     24556665444 47888888888888888888888888888877766 


Q ss_pred             cCCHHHHHHHHHHHHHhCCC
Q 027439          202 HKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pd  221 (223)
                      .|++++|+.+|+++++.+|+
T Consensus       227 ~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        227 QGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             CCCHHHHHHHHHHHHHHChh
Confidence            88888888888888877765

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=3.7e-08  Score=93.02  Aligned_cols=95  Identities=17%  Similarity=0.215  Sum_probs=73.2

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      =|+.+.-.++|++|++-|+++++++|.|+..+.+++..+| +++++++++..|+.+++..|+-+.++..+|.++.. +++
T Consensus       400 RgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y-r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-qqq  477 (606)
T KOG0547|consen  400 RGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY-RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD-QQQ  477 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-HHh
Confidence            3444455577888888888888888888888888885556 57788888888888888888888888888877777 788


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 027439          205 ASRAESYFDQAVKAAPD  221 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pd  221 (223)
                      |++|+++|++|+.+.|.
T Consensus       478 Fd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  478 FDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHHHHhhccc
Confidence            88888888888887765

>PLN02789 farnesyltranstransferase

Probab=98.68  E-value=1.4e-07  Score=85.56  Aligned_cols=91  Identities=9%  Similarity=0.068  Sum_probs=81.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA--SR  207 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g-dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~--ee  207 (223)
                      ..+.+++|+..+.++|+++|++..+|..++.++.. ++ ++++|+.+++++++.+|++..+|...+.++.. .++.  ++
T Consensus        49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~  126 (320)
T PLN02789         49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANK  126 (320)
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHH
Confidence            34678999999999999999999999999977774 66 68999999999999999999999999988766 6763  78


Q ss_pred             HHHHHHHHHHhCCCCC
Q 027439          208 AESYFDQAVKAAPDDW  223 (223)
Q Consensus       208 Ai~~fekAL~l~Pdn~  223 (223)
                      ++.+++++++.+|+|+
T Consensus       127 el~~~~kal~~dpkNy  142 (320)
T PLN02789        127 ELEFTRKILSLDAKNY  142 (320)
T ss_pred             HHHHHHHHHHhCcccH
Confidence            9999999999999874

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.67  E-value=9.1e-08  Score=89.97  Aligned_cols=70  Identities=16%  Similarity=0.132  Sum_probs=59.5

Q ss_pred             HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV---LSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       147 eldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~---l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      ..+|+++..++|+|..|+ .+++|++|+..|++||+++|++..+   |+++|.++.. +|++++|+.+|++|+++
T Consensus        69 ~~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            368999999999997777 4899999999999999999998854   8889966555 89999999999999887

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=1.5e-07  Score=80.71  Aligned_cols=94  Identities=19%  Similarity=0.213  Sum_probs=82.1

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRN-----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n-----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~  201 (223)
                      .-.+.+|+|++|..-|.+||++.|..     ...|.|.|.++. +++..+.|+..|.+||+++|.+..++.+.|.+|-+ 
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-  180 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-  180 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-
Confidence            34566789999999999999999976     356788884444 68999999999999999999999999999977666 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 027439          202 HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ...|++|++-|+++++.+|.+
T Consensus       181 ~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             hhhHHHHHHHHHHHHHhCcch
Confidence            899999999999999999964

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.66  E-value=1.2e-07  Score=66.31  Aligned_cols=57  Identities=23%  Similarity=0.295  Sum_probs=53.9

Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          165 EARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       165 ~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ..+++|++|++++++++.++|+++..+..+|.+++. .|++++|+..|+++++..|++
T Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCc
Confidence            368999999999999999999999999999988888 999999999999999999975

>PRK15331 chaperone protein SicA; Provisional

Probab=98.66  E-value=1.2e-07  Score=78.41  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=78.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      ..|++++|+.+|+-+...+|.|..+|..||. +++.+++|++|+..|..|..++++||...+..|.+++. .|+.+.|+.
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa-~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~~~~~A~~  126 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAA-VCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MRKAAKARQ  126 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hCCHHHHHH
Confidence            3589999999999999999999999999995 55568999999999999999999999999999977666 999999999


Q ss_pred             HHHHHHH
Q 027439          211 YFDQAVK  217 (223)
Q Consensus       211 ~fekAL~  217 (223)
                      .|+.++.
T Consensus       127 ~f~~a~~  133 (165)
T PRK15331        127 CFELVNE  133 (165)
T ss_pred             HHHHHHh
Confidence            9999987

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.66  E-value=1.5e-07  Score=93.70  Aligned_cols=91  Identities=24%  Similarity=0.427  Sum_probs=84.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      ..|++++|...+.++|+++|.++.+|..+|.++- .+|+.+++..++-.|--++|.|...|..++...-. +|++.+|+-
T Consensus       151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~  228 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARY  228 (895)
T ss_pred             HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHH
Confidence            3499999999999999999999999999995554 68999999999999999999999999999977666 999999999


Q ss_pred             HHHHHHHhCCCCC
Q 027439          211 YFDQAVKAAPDDW  223 (223)
Q Consensus       211 ~fekAL~l~Pdn~  223 (223)
                      +|.||++.+|.||
T Consensus       229 cy~rAI~~~p~n~  241 (895)
T KOG2076|consen  229 CYSRAIQANPSNW  241 (895)
T ss_pred             HHHHHHhcCCcch
Confidence            9999999999997

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.64  E-value=2e-07  Score=78.16  Aligned_cols=87  Identities=20%  Similarity=0.235  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 027439          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG----------DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---  201 (223)
Q Consensus       135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g----------dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~---  201 (223)
                      |+.|.+.++..+..||.+++.+++.|-+|.+ +.          -+++|+.=|++||.++|+..+++..+|.++...   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            6889999999999999999999999988764 32          357888889999999999999999999886441   


Q ss_pred             -------cCCHHHHHHHHHHHHHhCCCC
Q 027439          202 -------HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       202 -------~G~~eeAi~~fekAL~l~Pdn  222 (223)
                             ...|++|..+|++|+..+|+|
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                   123788999999999999986

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.2e-07  Score=90.08  Aligned_cols=92  Identities=16%  Similarity=0.188  Sum_probs=85.2

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      ..+.+||+.|+.+|.++|.++|.|...+.|...++. .+++|++|..--.+.++++|+=+..|...|..++- +|+|++|
T Consensus        12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA   89 (539)
T KOG0548|consen   12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEA   89 (539)
T ss_pred             hcccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHH
Confidence            356789999999999999999999999999985555 58999999999999999999999999999988888 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      +..|.+.|+.+|+|
T Consensus        90 ~~ay~~GL~~d~~n  103 (539)
T KOG0548|consen   90 ILAYSEGLEKDPSN  103 (539)
T ss_pred             HHHHHHHhhcCCch
Confidence            99999999999987

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=1.1e-07  Score=90.01  Aligned_cols=84  Identities=24%  Similarity=0.197  Sum_probs=75.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      .-++.++.|++|++||.+||++.|+.+.++.|++ ++|...|++++.++.|.+|++++|+...++++.|.++-. +|++.
T Consensus       123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNra-AcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~-lg~~~  200 (606)
T KOG0547|consen  123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRA-ACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ-LGKFD  200 (606)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHH-HHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh-hccHH
Confidence            3345568999999999999999999999999999 666679999999999999999999999999999977666 99999


Q ss_pred             HHHHHH
Q 027439          207 RAESYF  212 (223)
Q Consensus       207 eAi~~f  212 (223)
                      +|+.-.
T Consensus       201 eal~D~  206 (606)
T KOG0547|consen  201 EALFDV  206 (606)
T ss_pred             HHHHhh
Confidence            997544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=2e-07  Score=87.73  Aligned_cols=93  Identities=14%  Similarity=0.164  Sum_probs=84.3

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      .||-|....+...|+..|++|++++|.+-.+|..+|..+- ..+-..=|+.+|++|++..|+|..+|..+|.++-+ .++
T Consensus       370 mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~  447 (559)
T KOG1155|consen  370 MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LNR  447 (559)
T ss_pred             hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hcc
Confidence            3567777889999999999999999999999999997776 47889999999999999999999999999987766 999


Q ss_pred             HHHHHHHHHHHHHhC
Q 027439          205 ASRAESYFDQAVKAA  219 (223)
Q Consensus       205 ~eeAi~~fekAL~l~  219 (223)
                      .++|+..|.+|+..+
T Consensus       448 ~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  448 LEEAIKCYKRAILLG  462 (559)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999998764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.60  E-value=2.3e-07  Score=82.79  Aligned_cols=92  Identities=8%  Similarity=0.025  Sum_probs=79.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHc
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN----VLSMYGDLIWQSH  202 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~----~l~~lA~ll~~~~  202 (223)
                      .++...|++++|+..++++++++|+++.++..+|.+++. .+++++|+.++++++...|.++.    .+..++.++.. .
T Consensus       122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~  199 (355)
T cd05804         122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-R  199 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-C
Confidence            456678999999999999999999999999999987775 89999999999999999875443    34568877666 9


Q ss_pred             CCHHHHHHHHHHHHHhCC
Q 027439          203 KDASRAESYFDQAVKAAP  220 (223)
Q Consensus       203 G~~eeAi~~fekAL~l~P  220 (223)
                      |++++|+..|++++...|
T Consensus       200 G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         200 GDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCHHHHHHHHHHHhcccc
Confidence            999999999999976655

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=98.59  E-value=4e-07  Score=85.84  Aligned_cols=87  Identities=8%  Similarity=0.051  Sum_probs=81.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      .+..+|..+.+++++++|.|+.++..+|..+.. .++++.|...|++|+.++|+.+.+++..|++++. .|+.++|++.+
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i  395 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITGL-SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI  395 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            477899999999999999999999999966664 6889999999999999999999999999998888 99999999999


Q ss_pred             HHHHHhCCC
Q 027439          213 DQAVKAAPD  221 (223)
Q Consensus       213 ekAL~l~Pd  221 (223)
                      +++++++|.
T Consensus       396 ~~alrLsP~  404 (458)
T PRK11906        396 DKSLQLEPR  404 (458)
T ss_pred             HHHhccCch
Confidence            999999984

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.57  E-value=9.4e-08  Score=65.94  Aligned_cols=56  Identities=20%  Similarity=0.339  Sum_probs=52.0

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ..++|++|+++|++++..+|++..++..++.+++. .|++++|...+++++..+|++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCH
Confidence            47999999999999999999999999999999888 999999999999999998873

...

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=3.2e-07  Score=87.82  Aligned_cols=96  Identities=20%  Similarity=0.244  Sum_probs=80.7

Q ss_pred             ccccccCCCChHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQA----DPR---NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLel----dP~---n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      -|-++...+.|.+|+.+|+.+++.    .+.   =...+.|+| ..+.+++.|++|+.+|++||.+.|.++.++...|.+
T Consensus       420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG-H~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i  498 (611)
T KOG1173|consen  420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG-HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI  498 (611)
T ss_pred             hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHH-HHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence            334445567999999999999943    222   234589999 555579999999999999999999999999999977


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          198 IWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       198 l~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.. +|+++.|+++|.|||.++|+|
T Consensus       499 y~l-lgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  499 YHL-LGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHH-hcChHHHHHHHHHHHhcCCcc
Confidence            776 999999999999999999987

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.1e-06  Score=78.70  Aligned_cols=89  Identities=13%  Similarity=0.146  Sum_probs=81.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA--SRAES  210 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~--eeAi~  210 (223)
                      ...++.+.-++.-++.||+|+.-|..||.++. .++++..|+..|.+|+++.|++++++..||.+++...+..  .+|..
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            45888999999999999999999999997776 6899999999999999999999999999999988866644  48999


Q ss_pred             HHHHHHHhCCCC
Q 027439          211 YFDQAVKAAPDD  222 (223)
Q Consensus       211 ~fekAL~l~Pdn  222 (223)
                      .|++++.++|+|
T Consensus       215 ll~~al~~D~~~  226 (287)
T COG4235         215 LLRQALALDPAN  226 (287)
T ss_pred             HHHHHHhcCCcc
Confidence            999999999986

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.51  E-value=7.1e-07  Score=73.41  Aligned_cols=76  Identities=14%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          145 MIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       145 aLeld-P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ...++ ++....++.+|..++ ..|++++|+.+|+-+..++|.+...|+.+|.++.. .|++++|+..|.+|+.++|+|
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence            34567 778888889996677 58999999999999999999999999999966666 999999999999999999987

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.51  E-value=5.9e-07  Score=71.64  Aligned_cols=86  Identities=17%  Similarity=0.195  Sum_probs=69.7

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      .+...+++++|+..|++++...|++   ..+..++|.++. .+++|++|+..++. +.-.+-.+.++...|+++.. .|+
T Consensus        57 ~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~  133 (145)
T PF09976_consen   57 AAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGD  133 (145)
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCC
Confidence            3445689999999999999987665   457788897776 48999999999976 34455567888899998888 999


Q ss_pred             HHHHHHHHHHHH
Q 027439          205 ASRAESYFDQAV  216 (223)
Q Consensus       205 ~eeAi~~fekAL  216 (223)
                      +++|+..|++||
T Consensus       134 ~~~A~~~y~~Al  145 (145)
T PF09976_consen  134 YDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHhC
Confidence            999999999885

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.49  E-value=5.2e-07  Score=78.88  Aligned_cols=95  Identities=19%  Similarity=0.176  Sum_probs=73.0

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQAD--PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeld--P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~  202 (223)
                      ...+|...++++++...++++.+..  +.++.+|..+|.++. +.|+.++|+++|++|++++|+|+.++..+++++.. .
T Consensus       116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~  193 (280)
T PF13429_consen  116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-M  193 (280)
T ss_dssp             --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-T
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-C
Confidence            3445566789999999999988765  678999999996555 68999999999999999999999999999988877 8


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 027439          203 KDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       203 G~~eeAi~~fekAL~l~Pd  221 (223)
                      |+++++...+++..+..|+
T Consensus       194 ~~~~~~~~~l~~~~~~~~~  212 (280)
T PF13429_consen  194 GDYDEAREALKRLLKAAPD  212 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-HT
T ss_pred             CChHHHHHHHHHHHHHCcC
Confidence            9999988888777766543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=1.3e-06  Score=76.96  Aligned_cols=86  Identities=14%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 027439          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK--DASRAESYFD  213 (223)
Q Consensus       136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G--~~eeAi~~fe  213 (223)
                      -+|++.+.+-++..+.+..+|..++..+. -.++|++|..++++.+.++|.++..+..+|+++|...|  +++-|..+|.
T Consensus       137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~  215 (289)
T KOG3060|consen  137 LEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE  215 (289)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34444444445555566778988986665 47999999999999999999999999999999888333  6678999999


Q ss_pred             HHHHhCCCC
Q 027439          214 QAVKAAPDD  222 (223)
Q Consensus       214 kAL~l~Pdn  222 (223)
                      ++++++|.+
T Consensus       216 ~alkl~~~~  224 (289)
T KOG3060|consen  216 RALKLNPKN  224 (289)
T ss_pred             HHHHhChHh
Confidence            999999854

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.46  E-value=9.7e-07  Score=83.26  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=86.4

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      ++-.+...+++++|+..++..++..|+|+.++...+..+. ..++.++|.+.+++++.++|+.+.+..++|.++++ .|+
T Consensus       312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~  389 (484)
T COG4783         312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGK  389 (484)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCC
Confidence            3444556689999999999999999999999988886666 58999999999999999999999999999999888 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      +++|+.++++.+..+|+|
T Consensus       390 ~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         390 PQEAIRILNRYLFNDPED  407 (484)
T ss_pred             hHHHHHHHHHHhhcCCCC
Confidence            999999999999998876

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.45  E-value=3.2e-06  Score=66.56  Aligned_cols=89  Identities=12%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQS  201 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~---d~~~l~~lA~ll~~~  201 (223)
                      .|...|+.++|+.+|+++++.....   ..++.++|..+. .+|++++|+..+++++...|+   +..+...++.+++. 
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-   87 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-   87 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-
Confidence            3456789999999999999976554   567889997777 589999999999999999898   77788888877777 


Q ss_pred             cCCHHHHHHHHHHHHHh
Q 027439          202 HKDASRAESYFDQAVKA  218 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l  218 (223)
                      .|++++|+..+..++.-
T Consensus        88 ~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   88 LGRPKEALEWLLEALAE  104 (120)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887753

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.40  E-value=1.8e-06  Score=75.88  Aligned_cols=89  Identities=21%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      .|+-+.+..+..+....+|.+..++..+++... ++|+|.+|+..+++|..++|+|+.+|..+|.++-+ .|+++.|...
T Consensus        79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~a  156 (257)
T COG5010          79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRA  156 (257)
T ss_pred             cccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHH
Confidence            345667777788888888999888888997777 68999999999999999999999999999966555 9999999999


Q ss_pred             HHHHHHhCCCC
Q 027439          212 FDQAVKAAPDD  222 (223)
Q Consensus       212 fekAL~l~Pdn  222 (223)
                      |.|++++.|++
T Consensus       157 y~qAl~L~~~~  167 (257)
T COG5010         157 YRQALELAPNE  167 (257)
T ss_pred             HHHHHHhccCC
Confidence            99999998874

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.4e-06  Score=76.31  Aligned_cols=90  Identities=19%  Similarity=0.129  Sum_probs=80.9

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      .-|+....|..|+.+|-++|.++|..+.++.|.|.++. +.++++.+..-|.+|++++||....++.++..... ...|+
T Consensus        18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~   95 (284)
T KOG4642|consen   18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYD   95 (284)
T ss_pred             ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hcccc
Confidence            44555678999999999999999999999999996665 58999999999999999999999999999977777 89999


Q ss_pred             HHHHHHHHHHHh
Q 027439          207 RAESYFDQAVKA  218 (223)
Q Consensus       207 eAi~~fekAL~l  218 (223)
                      +|+..+++|..+
T Consensus        96 eaI~~Lqra~sl  107 (284)
T KOG4642|consen   96 EAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999655

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.38  E-value=1.5e-06  Score=85.20  Aligned_cols=97  Identities=12%  Similarity=0.109  Sum_probs=88.2

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      +|+....+++|.++.++++..++++|-....|+++| ++..+.++++.|+++|.+++.++|++..+|.+++.++.. .++
T Consensus       491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G-~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~  568 (777)
T KOG1128|consen  491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLG-CAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKK  568 (777)
T ss_pred             hccccccchhHHHHHHHHHHHhhcCccchhHHHhcc-HHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-Hhh
Confidence            445555678999999999999999999999999999 555579999999999999999999999999999987777 999


Q ss_pred             HHHHHHHHHHHHHhCCCCC
Q 027439          205 ASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn~  223 (223)
                      ..+|...+++|++.+-++|
T Consensus       569 k~ra~~~l~EAlKcn~~~w  587 (777)
T KOG1128|consen  569 KKRAFRKLKEALKCNYQHW  587 (777)
T ss_pred             hHHHHHHHHHHhhcCCCCC
Confidence            9999999999999998877

>PRK11906 transcriptional regulator; Provisional

Probab=98.38  E-value=2.3e-06  Score=80.72  Aligned_cols=89  Identities=15%  Similarity=0.069  Sum_probs=78.3

Q ss_pred             CChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMI---QADPRNPLLLSNYARFLKEA--------RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       133 gd~~eA~~~y~~aL---eldP~n~~~l~nlA~~l~~~--------~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~  201 (223)
                      .+.++|..+|.+++   +++|+.+.++..+|.++..+        ..+..+|.++.++|++++|+|+.++..+|.+.+. 
T Consensus       272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-  350 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-  350 (458)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-
Confidence            35578999999999   99999999999999665543        2346789999999999999999999999988888 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 027439          202 HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .++++.|+..|++|+.++||.
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~  371 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDI  371 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCcc
Confidence            888999999999999999984

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.38  E-value=1.5e-06  Score=85.63  Aligned_cols=95  Identities=16%  Similarity=0.197  Sum_probs=85.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEE--YCARAILMSPNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~--~~ekAL~ldP~d~~~l~~lA~ll~~~~G  203 (223)
                      |.++...+.+++|.++|..++.+||+++.+...+|.++. +.|+-.-|+.  ++..|+++||.++.+|+.+|.++-. .|
T Consensus       691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~G  768 (799)
T KOG4162|consen  691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LG  768 (799)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cc
Confidence            456667789999999999999999999999999997776 5788777777  9999999999999999999987666 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.++|.+.|+-|+++++.+
T Consensus       769 d~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  769 DSKQAAECFQAALQLEESN  787 (799)
T ss_pred             chHHHHHHHHHHHhhccCC
Confidence            9999999999999997653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.36  E-value=3.2e-06  Score=57.61  Aligned_cols=66  Identities=20%  Similarity=0.331  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++.++|..+. ..+++++|+..+++++...|++..++..++.++.. .+++++|+.+|++++...|.+
T Consensus         2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcc
Confidence            4678886666 47999999999999999999999999999988877 899999999999999988865

>TIGR00540 hemY_coli hemY protein

Probab=98.35  E-value=4.3e-06  Score=77.59  Aligned_cols=83  Identities=16%  Similarity=0.200  Sum_probs=55.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNP--LLLSNYARFLKEARGDLLKAEEYCA--RAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~--~~l~nlA~~l~~~~gdyeeA~~~~e--kAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      ++.+.+++.++++++.+|+|+  .++..+|+.++ +.+++++|.++|+  ++++.+|++.. +..+|.+++. .|+.++|
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~-~g~~~~A  389 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM-KHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQ-AGDKAEA  389 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH-cCCHHHH
Confidence            355667777777777777777  66667775554 4677777777777  46666665444 4467766666 7777777


Q ss_pred             HHHHHHHHHh
Q 027439          209 ESYFDQAVKA  218 (223)
Q Consensus       209 i~~fekAL~l  218 (223)
                      .++|++++..
T Consensus       390 ~~~~~~~l~~  399 (409)
T TIGR00540       390 AAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHHHH
Confidence            7777776543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.35  E-value=1.5e-06  Score=79.71  Aligned_cols=74  Identities=9%  Similarity=-0.009  Sum_probs=65.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      +.+|...+++++|+.+++++++++|+++.++.++|.+++ .+++|++|+.+|+++++++|+++.+...++.+...
T Consensus        43 a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         43 AQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            456677899999999999999999999999999997666 58999999999999999999999998888866433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.35  E-value=7.3e-07  Score=63.27  Aligned_cols=66  Identities=21%  Similarity=0.348  Sum_probs=53.2

Q ss_pred             CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMS----PN---DGNVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       151 ~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld----P~---d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +-+.++.++|.++. .+++|++|+.+|++++.+.    ++   -..++..+|.++.. .|++++|+.+|++++++
T Consensus         3 ~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence            34677899996666 6999999999999999762    22   25668888877777 99999999999999976

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.35  E-value=2.3e-06  Score=86.54  Aligned_cols=94  Identities=18%  Similarity=0.088  Sum_probs=69.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +..|...+++++|+++|+++++.+|+|+.++..++..+. ..+++++|++.+++++..+|++... ..++.++.. .+++
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~  185 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRN  185 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchH
Confidence            345666788888888888888888888888877764444 4688888888888888888875554 444544444 5677


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      .+|+..|+++++.+|++
T Consensus       186 ~~AL~~~ekll~~~P~n  202 (822)
T PRK14574        186 YDALQASSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            67888888888888875

>TIGR00540 hemY_coli hemY protein

Probab=98.34  E-value=2.1e-06  Score=79.70  Aligned_cols=95  Identities=13%  Similarity=0.052  Sum_probs=76.9

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcC
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLL-SNYARFLKEARGDLLKAEEYCARAILMSPNDG--NVLSMYGDLIWQSHK  203 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l-~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~--~~l~~lA~ll~~~~G  203 (223)
                      ..+...|++++|++.++++++..|++.... ..+-.+.....++.+++++.++++++.+|+|+  .++..+|++++. .|
T Consensus       271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~  349 (409)
T TIGR00540       271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HG  349 (409)
T ss_pred             HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-cc
Confidence            455667899999999999999999998531 01111222224788999999999999999999  999999999988 99


Q ss_pred             CHHHHHHHHH--HHHHhCCCC
Q 027439          204 DASRAESYFD--QAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fe--kAL~l~Pdn  222 (223)
                      ++++|+++|+  ++++..|++
T Consensus       350 ~~~~A~~~le~a~a~~~~p~~  370 (409)
T TIGR00540       350 EFIEAADAFKNVAACKEQLDA  370 (409)
T ss_pred             cHHHHHHHHHHhHHhhcCCCH
Confidence            9999999999  577778864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.34  E-value=3.1e-06  Score=85.51  Aligned_cols=88  Identities=13%  Similarity=0.095  Sum_probs=51.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY--GDLIWQSHKDASRA  208 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~l--A~ll~~~~G~~eeA  208 (223)
                      +.|+++.|+..|+++++.+|.++.....++.++. ..|++++|+.+|++++  +|.+...+..+  |.++.. .|++++|
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~-~gdyd~A  121 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRN-EKRWDQA  121 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence            4567778888888888888877533225543333 3566666666666666  33333333333  433333 5666666


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      ++.|+++++.+|+|
T Consensus       122 iely~kaL~~dP~n  135 (822)
T PRK14574        122 LALWQSSLKKDPTN  135 (822)
T ss_pred             HHHHHHHHhhCCCC
Confidence            66666666666654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.34  E-value=4.5e-06  Score=67.84  Aligned_cols=90  Identities=11%  Similarity=0.093  Sum_probs=73.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRN--PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n--~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~  205 (223)
                      ...+|..+...+.+.++.++.+  ..++.++|.++. .++++++|+.+|++|+.+.|+.   +.++..+|.++.. .|++
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~   88 (168)
T CHL00033         11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEH   88 (168)
T ss_pred             cccccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCH
Confidence            3456788888887777777766  667789995555 5899999999999999997763   4589999977777 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|++++.++|++
T Consensus        89 ~eA~~~~~~Al~~~~~~  105 (168)
T CHL00033         89 TKALEYYFQALERNPFL  105 (168)
T ss_pred             HHHHHHHHHHHHhCcCc
Confidence            99999999999998863

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.32  E-value=1e-06  Score=80.71  Aligned_cols=91  Identities=19%  Similarity=0.211  Sum_probs=84.2

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      ...+++..|+..|..|++.||+|-.+++.+|..+. ..|+-..|+.-+.+.|++.|+..-+..-.|.++++ +|++++|+
T Consensus        49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~  126 (504)
T KOG0624|consen   49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAE  126 (504)
T ss_pred             HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHH
Confidence            44578999999999999999999999999996666 58999999999999999999999999999988888 99999999


Q ss_pred             HHHHHHHHhCCCC
Q 027439          210 SYFDQAVKAAPDD  222 (223)
Q Consensus       210 ~~fekAL~l~Pdn  222 (223)
                      .-|+++|+.+|++
T Consensus       127 ~DF~~vl~~~~s~  139 (504)
T KOG0624|consen  127 ADFDQVLQHEPSN  139 (504)
T ss_pred             HHHHHHHhcCCCc
Confidence            9999999999965

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=2.7e-06  Score=81.64  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=76.7

Q ss_pred             ChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADP--RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP--~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      .+..-.++|-++...+|  .++++...|| ++|...++|++|+.+|+.||..+|+|...|..||..+-. ..+.++|+..
T Consensus       409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG-VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA  486 (579)
T KOG1125|consen  409 HLAHIQELFLEAARQLPTKIDPDVQSGLG-VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA  486 (579)
T ss_pred             HHHHHHHHHHHHHHhCCCCCChhHHhhhH-HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence            56777888999999999  7999999999 555568999999999999999999999999999966555 7789999999


Q ss_pred             HHHHHHhCCC
Q 027439          212 FDQAVKAAPD  221 (223)
Q Consensus       212 fekAL~l~Pd  221 (223)
                      |+||+++.|.
T Consensus       487 Y~rALqLqP~  496 (579)
T KOG1125|consen  487 YNRALQLQPG  496 (579)
T ss_pred             HHHHHhcCCC
Confidence            9999999985

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=1.2e-06  Score=78.47  Aligned_cols=77  Identities=12%  Similarity=0.018  Sum_probs=66.4

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      .|.+.|.|+.|++-++.+|.+||....+|.+||.+++ .+|+|++|++.|++||+++|++..+..++-.+-.+ .++..
T Consensus       124 Ay~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~-l~e~~  200 (304)
T KOG0553|consen  124 AYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK-LNEPK  200 (304)
T ss_pred             HHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH-hcCCC
Confidence            4566799999999999999999999999999997777 58999999999999999999999888888855444 44433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.5e-06  Score=80.94  Aligned_cols=89  Identities=18%  Similarity=0.153  Sum_probs=79.9

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      .++|.|..|.++|.++|.++|.|    +..|.|+|.+.. ++++..+|+.-|..|+.+||....++...|.++.. ++++
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~-le~~  337 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLA-LEKW  337 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH-HHHH
Confidence            35689999999999999999987    466888995555 79999999999999999999999999999988877 9999


Q ss_pred             HHHHHHHHHHHHhCC
Q 027439          206 SRAESYFDQAVKAAP  220 (223)
Q Consensus       206 eeAi~~fekAL~l~P  220 (223)
                      ++|++.|++|.+...
T Consensus       338 e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  338 EEAVEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHHHHhhcc
Confidence            999999999998753

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=3.7e-06  Score=77.91  Aligned_cols=90  Identities=12%  Similarity=0.094  Sum_probs=77.1

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      +|.+.++|.+|+..++++|+++|+|..++++.|.++.. .++|+.|+..|++|++++|+|..+..-+..+..+.....++
T Consensus       266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK  344 (397)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            44556899999999999999999999999999988885 89999999999999999999999998888665553344456


Q ss_pred             HHHHHHHHHHh
Q 027439          208 AESYFDQAVKA  218 (223)
Q Consensus       208 Ai~~fekAL~l  218 (223)
                      ..++|.+++..
T Consensus       345 ekk~y~~mF~k  355 (397)
T KOG0543|consen  345 EKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHhhc
Confidence            68888888765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.28  E-value=6e-06  Score=73.68  Aligned_cols=86  Identities=15%  Similarity=0.115  Sum_probs=71.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD  213 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fe  213 (223)
                      ....+.+.++.....+|....++..+|.++. .+|++++|+..++++++++|+++.++..++.+++. .|++++|+.+|+
T Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~  172 (355)
T cd05804          95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFME  172 (355)
T ss_pred             CchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            3344555555555667777777888885555 58999999999999999999999999999999888 999999999999


Q ss_pred             HHHHhCCC
Q 027439          214 QAVKAAPD  221 (223)
Q Consensus       214 kAL~l~Pd  221 (223)
                      +++...|.
T Consensus       173 ~~l~~~~~  180 (355)
T cd05804         173 SWRDTWDC  180 (355)
T ss_pred             hhhhccCC
Confidence            99988763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.27  E-value=7.6e-06  Score=78.87  Aligned_cols=85  Identities=13%  Similarity=0.068  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          135 NNSTDLYYQKMIQA--DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       135 ~~eA~~~y~~aLel--dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      ..++....++++.+  +|.++.++..+| ......+++++|+.++++|+.++| +..+|..+|.++.. .|++++|++.|
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala-~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~~  476 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILA-VQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADAY  476 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            34555666666653  788888888888 444458999999999999999999 58899999988877 99999999999


Q ss_pred             HHHHHhCCCC
Q 027439          213 DQAVKAAPDD  222 (223)
Q Consensus       213 ekAL~l~Pdn  222 (223)
                      ++|+.++|.+
T Consensus       477 ~~A~~L~P~~  486 (517)
T PRK10153        477 STAFNLRPGE  486 (517)
T ss_pred             HHHHhcCCCC
Confidence            9999999973

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.27  E-value=1.1e-05  Score=74.70  Aligned_cols=84  Identities=14%  Similarity=0.194  Sum_probs=73.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      ++++++++.+++.++.+|+|+..+..+|..+. +.+++++|.++|+++++.+|++.. +..++.++.. +|+.++|..+|
T Consensus       308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~-~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~-~g~~~~A~~~~  384 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM-KHGEWQEASLAFRAALKQRPDAYD-YAWLADALDR-LHKPEEAAAMR  384 (398)
T ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH-cCCHHHHHHHH
Confidence            58899999999999999999999999997777 589999999999999999997655 4468877777 99999999999


Q ss_pred             HHHHHhC
Q 027439          213 DQAVKAA  219 (223)
Q Consensus       213 ekAL~l~  219 (223)
                      ++++.+-
T Consensus       385 ~~~l~~~  391 (398)
T PRK10747        385 RDGLMLT  391 (398)
T ss_pred             HHHHhhh
Confidence            9998753

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.22  E-value=1.4e-05  Score=59.50  Aligned_cols=68  Identities=18%  Similarity=0.151  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.++...|..+. .++++++|+..|++++..+|++   +.+++.+|.+++. .+++++|+.+|++++...|++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCC
Confidence            356678886666 5899999999999999999987   5788899988888 999999999999999998874

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.22  E-value=8.1e-06  Score=81.59  Aligned_cols=94  Identities=20%  Similarity=0.219  Sum_probs=87.3

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -|.+|+..||.+++..+.-.|-.++|.+...|..++ -+...++.+.+|.-+|.|||.++|.+.......+.++.+ .|+
T Consensus       179 L~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la-dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~-~G~  256 (895)
T KOG2076|consen  179 LGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA-DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK-TGD  256 (895)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH-HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hCh
Confidence            688899999999999999999999999999999999 455568999999999999999999999999999976666 999


Q ss_pred             HHHHHHHHHHHHHhCC
Q 027439          205 ASRAESYFDQAVKAAP  220 (223)
Q Consensus       205 ~eeAi~~fekAL~l~P  220 (223)
                      +.+|.+.|++++++.|
T Consensus       257 ~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  257 LKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHHHhhCC
Confidence            9999999999999988

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.22  E-value=8.7e-06  Score=76.94  Aligned_cols=85  Identities=20%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +.++...++.++|++.+++++.++|+...++.+||..|.. .|++.+|+.++.+.+..+|+|+..|..+|..+-. +|+.
T Consensus       347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~  424 (484)
T COG4783         347 GDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNR  424 (484)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCch
Confidence            3445566899999999999999999999999999988884 8999999999999999999999999999987544 4444


Q ss_pred             HHHHHHH
Q 027439          206 SRAESYF  212 (223)
Q Consensus       206 eeAi~~f  212 (223)
                      .+|...+
T Consensus       425 ~~a~~A~  431 (484)
T COG4783         425 AEALLAR  431 (484)
T ss_pred             HHHHHHH
Confidence            4444333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.21  E-value=8.3e-06  Score=78.59  Aligned_cols=88  Identities=7%  Similarity=0.001  Sum_probs=71.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcC
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-------GDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~-------gdyeeA~~~~ekAL~l--dP~d~~~l~~lA~ll~~~~G  203 (223)
                      +++.+|+.+|+++++++|+++.++..++.++..+.       .+..+|.+..++++.+  +|.++.++..+|.+... .|
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g  434 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KG  434 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cC
Confidence            45779999999999999999999998885554321       1345677777787774  78889999989866665 89


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 027439          204 DASRAESYFDQAVKAAPD  221 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pd  221 (223)
                      ++++|..+|++|+.++|+
T Consensus       435 ~~~~A~~~l~rAl~L~ps  452 (517)
T PRK10153        435 KTDEAYQAINKAIDLEMS  452 (517)
T ss_pred             CHHHHHHHHHHHHHcCCC
Confidence            999999999999999984

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=7.6e-06  Score=72.17  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=84.1

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      -.++..+.+++|+++|+..++.||.|..++-.--.++. .+|+.-+|++.+..-++..++|.++|.-++++++. .++|+
T Consensus        94 m~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~  171 (289)
T KOG3060|consen   94 MLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFE  171 (289)
T ss_pred             HHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHH
Confidence            34566789999999999999999999988876664555 58999999999999999999999999999999888 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|...|++.+-++|-+
T Consensus       172 kA~fClEE~ll~~P~n  187 (289)
T KOG3060|consen  172 KAAFCLEELLLIQPFN  187 (289)
T ss_pred             HHHHHHHHHHHcCCCc
Confidence            9999999999998864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.18  E-value=2e-05  Score=69.82  Aligned_cols=91  Identities=20%  Similarity=0.207  Sum_probs=81.2

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcC
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHK  203 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G  203 (223)
                      ...++|..|+..|+.-++..|+.   +.+++.||..+| .+++|+.|...|..++.-.|+.   ++.++.+|.++.. ++
T Consensus       152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~  229 (262)
T COG1729         152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LG  229 (262)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hc
Confidence            34589999999999999999986   578899998888 5899999999999999988765   5789999988888 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.++|...|+++++..|+.
T Consensus       230 ~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         230 NTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             CHHHHHHHHHHHHHHCCCC
Confidence            9999999999999998863

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.18  E-value=1.9e-05  Score=64.53  Aligned_cols=71  Identities=17%  Similarity=0.271  Sum_probs=60.6

Q ss_pred             CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       150 P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.++.++.++|..+. ..+++++|+.+|++++.+.|+.   ..++..+|.++.. .|++++|+.+|++++...|++
T Consensus        32 ~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         32 AKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc
Confidence            355677899996555 5899999999999999987764   4689999987777 999999999999999998875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.2e-05  Score=75.29  Aligned_cols=85  Identities=14%  Similarity=0.328  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027439          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ  214 (223)
Q Consensus       135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fek  214 (223)
                      .++|.++|+++++++|....+...+|..+. +.|+++.++.++++++...|+ ...+..+|+++.. ...+++|+.+|.+
T Consensus       420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A-~Ne~Q~am~~y~~  496 (564)
T KOG1174|consen  420 REKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRA-QNEPQKAMEYYYK  496 (564)
T ss_pred             HHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHH-hhhHHHHHHHHHH
Confidence            489999999999999999999999995555 789999999999999999884 5678899998888 8999999999999


Q ss_pred             HHHhCCCC
Q 027439          215 AVKAAPDD  222 (223)
Q Consensus       215 AL~l~Pdn  222 (223)
                      ||.++|+|
T Consensus       497 ALr~dP~~  504 (564)
T KOG1174|consen  497 ALRQDPKS  504 (564)
T ss_pred             HHhcCccc
Confidence            99999986

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.16  E-value=2.3e-05  Score=72.60  Aligned_cols=88  Identities=13%  Similarity=0.110  Sum_probs=73.6

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNY-ARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nl-A~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      ...|+++.|..+|+++.+.+|++..+...+ +. ++...+++++|...++++++.+|+++.++..++.++.. .|++++|
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~-l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-~gdw~~a  206 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRVR-IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-TGAWSSL  206 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhHHHH
Confidence            456899999999999999999986544333 54 44468999999999999999999999999999988777 8999999


Q ss_pred             HHHHHHHHHhC
Q 027439          209 ESYFDQAVKAA  219 (223)
Q Consensus       209 i~~fekAL~l~  219 (223)
                      ++.+.++.+..
T Consensus       207 ~~~l~~l~k~~  217 (398)
T PRK10747        207 LDILPSMAKAH  217 (398)
T ss_pred             HHHHHHHHHcC
Confidence            98888887654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.16  E-value=1.4e-05  Score=74.79  Aligned_cols=88  Identities=17%  Similarity=0.231  Sum_probs=60.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      ..+.+++|+..|++..+.+|..   ...+|+++. ..++..+|++.+.+++..+|.+...+...|.++.. .++++.|+.
T Consensus       181 ~t~~~~~ai~lle~L~~~~pev---~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~  255 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPEV---AVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALE  255 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCcH---HHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence            3456777777777777777652   233554444 35666777777777777777777777777766666 777777777


Q ss_pred             HHHHHHHhCCCCC
Q 027439          211 YFDQAVKAAPDDW  223 (223)
Q Consensus       211 ~fekAL~l~Pdn~  223 (223)
                      ..++|+.+.|++|
T Consensus       256 iAk~av~lsP~~f  268 (395)
T PF09295_consen  256 IAKKAVELSPSEF  268 (395)
T ss_pred             HHHHHHHhCchhH
Confidence            7777777777664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.15  E-value=3.9e-05  Score=62.23  Aligned_cols=90  Identities=19%  Similarity=0.172  Sum_probs=75.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCC
Q 027439          131 NNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQSHKD  204 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~---~l~~lA~ll~~~~G~  204 (223)
                      ..++|++|++.|+.+....|..   ..+...++.+++ ..++|++|+..+++.|+++|+++.   +++..|...+. +..
T Consensus        22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~-~~~   99 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE-QDE   99 (142)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH-Hhh
Confidence            4589999999999999988876   467788897777 489999999999999999998864   56777755665 554


Q ss_pred             ---------------HHHHHHHHHHHHHhCCCC
Q 027439          205 ---------------ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ---------------~eeAi~~fekAL~l~Pdn  222 (223)
                                     ..+|+..|++++..-|+.
T Consensus       100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen  100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence                           779999999999999974

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.12  E-value=1.1e-05  Score=73.35  Aligned_cols=93  Identities=11%  Similarity=0.117  Sum_probs=74.2

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRN-----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n-----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~  201 (223)
                      .+|+...+|++|+..-++..++.+.+     +.++..||..+. ...++++|+..+.+|+..||+...+-..+|.+... 
T Consensus       149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-  226 (389)
T COG2956         149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELA-  226 (389)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-
Confidence            45666778888888888888887765     344556664444 35788889999999999999998888888988887 


Q ss_pred             cCCHHHHHHHHHHHHHhCCC
Q 027439          202 HKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pd  221 (223)
                      .|+|+.|++.++++++.||+
T Consensus       227 ~g~y~~AV~~~e~v~eQn~~  246 (389)
T COG2956         227 KGDYQKAVEALERVLEQNPE  246 (389)
T ss_pred             ccchHHHHHHHHHHHHhChH
Confidence            89999999999999888875

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=5.3e-06  Score=79.60  Aligned_cols=90  Identities=16%  Similarity=0.295  Sum_probs=67.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHHcCC
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS----PND---GNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld----P~d---~~~l~~lA~ll~~~~G~  204 (223)
                      .++++-|.++|.+|+.+.|.++.+++.+|-+.| ..+.|.+|+.+|+.+++.-    +.-   ...+.++|-++.+ ++.
T Consensus       393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay-~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~  470 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY-TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNK  470 (611)
T ss_pred             hccHHHHHHHHHHHHhcCCCcchhhhhhhheee-hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-Hhh
Confidence            467788888888888888888888888885555 4688888888888888322    211   1236677765555 888


Q ss_pred             HHHHHHHHHHHHHhCCCCC
Q 027439          205 ASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn~  223 (223)
                      +++|+.+|+++|.+.|.||
T Consensus       471 ~~eAI~~~q~aL~l~~k~~  489 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLSPKDA  489 (611)
T ss_pred             HHHHHHHHHHHHHcCCCch
Confidence            9999999999999888875

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.11  E-value=6.1e-06  Score=77.81  Aligned_cols=59  Identities=14%  Similarity=0.007  Sum_probs=51.4

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLL---LSNYARFLKEARGDLLKAEEYCARAILMS  184 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~---l~nlA~~l~~~~gdyeeA~~~~ekAL~ld  184 (223)
                      -|..|...++|++|+.+|+++++++|+++.+   |+|+| +++..+|++++|++++++|+++.
T Consensus        81 LG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLA-caya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         81 LGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKA-CCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhc
Confidence            3456677899999999999999999999854   99999 55557999999999999999984

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.07  E-value=5.3e-05  Score=66.17  Aligned_cols=91  Identities=20%  Similarity=0.138  Sum_probs=72.5

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLL---SNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHK  203 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l---~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~---~~l~~lA~ll~~~~G  203 (223)
                      ...++|++|++.|++++...|..+.+.   .++|.+++ +.++|++|+..++++++.+|+++   .+++..|.+.+. .+
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~-~~  120 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA-LD  120 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh-cc
Confidence            446899999999999999999987654   78897777 58999999999999999999875   456666644322 21


Q ss_pred             ---------------C---HHHHHHHHHHHHHhCCCC
Q 027439          204 ---------------D---ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ---------------~---~eeAi~~fekAL~l~Pdn  222 (223)
                                     |   ..+|+..|++.++..|+.
T Consensus       121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S  157 (243)
T PRK10866        121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS  157 (243)
T ss_pred             hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence                           1   347889999999999874

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.07  E-value=1.1e-05  Score=81.98  Aligned_cols=82  Identities=13%  Similarity=0.041  Sum_probs=64.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      .++ .++++|-..+...+.+..++..+| .+|..++++++|...|+++++++|+|+.++.++|..+-. . ++++|+.++
T Consensus        97 ~~~-~~ve~~~~~i~~~~~~k~Al~~LA-~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~  172 (906)
T PRK14720         97 LKW-AIVEHICDKILLYGENKLALRTLA-EAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYL  172 (906)
T ss_pred             cch-hHHHHHHHHHHhhhhhhHHHHHHH-HHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHH
Confidence            355 666666666666888888888888 444467888888888888888888888888888876666 5 888888888


Q ss_pred             HHHHHh
Q 027439          213 DQAVKA  218 (223)
Q Consensus       213 ekAL~l  218 (223)
                      .+|++.
T Consensus       173 ~KAV~~  178 (906)
T PRK14720        173 KKAIYR  178 (906)
T ss_pred             HHHHHH
Confidence            888775

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.06  E-value=3.8e-05  Score=71.80  Aligned_cols=89  Identities=16%  Similarity=0.110  Sum_probs=78.9

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -+++|...++..+|+..++++++.+|.+...+...|.++.. +++++.|+++.++|+.+.|++...|..+|.+|.. .|+
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d  283 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGD  283 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCC
Confidence            34444455788899999999999999999999999988884 7999999999999999999999999999988888 999


Q ss_pred             HHHHHHHHHHH
Q 027439          205 ASRAESYFDQA  215 (223)
Q Consensus       205 ~eeAi~~fekA  215 (223)
                      ++.|+..++-+
T Consensus       284 ~e~ALlaLNs~  294 (395)
T PF09295_consen  284 FENALLALNSC  294 (395)
T ss_pred             HHHHHHHHhcC
Confidence            99999877643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.03  E-value=1.3e-05  Score=76.97  Aligned_cols=92  Identities=13%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             ccccccCCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDG  188 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLel--------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--------P~d~  188 (223)
                      -+..|...++|+.|+..++++++.        .|.-.....++|.++. .+++|.+|+.+|++|+.+-        |.-+
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va  283 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVA  283 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            345667789999999999999998        5555566666995444 6899999999999999863        4445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .++.++|.+++. .|++++|..++++|+.+
T Consensus       284 ~~l~nLa~ly~~-~GKf~EA~~~~e~Al~I  312 (508)
T KOG1840|consen  284 ATLNNLAVLYYK-QGKFAEAEEYCERALEI  312 (508)
T ss_pred             HHHHHHHHHHhc-cCChHHHHHHHHHHHHH
Confidence            778899988887 99999999999999876

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.03  E-value=2.9e-05  Score=65.60  Aligned_cols=93  Identities=20%  Similarity=0.241  Sum_probs=71.2

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSH  202 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~---~~l~~lA~ll~~~~  202 (223)
                      +...|+|.+|+..|++++...|..   +.+...+|.+++ ..++|++|+..+++.+...|+++   .+++.+|.+.+...
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~   93 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI   93 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence            345689999999999999998876   567889997777 58999999999999999999875   56778887655422


Q ss_pred             ----------CCHHHHHHHHHHHHHhCCCC
Q 027439          203 ----------KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 ----------G~~eeAi~~fekAL~l~Pdn  222 (223)
                                ....+|+..|+..++..|+.
T Consensus        94 ~~~~~~~~D~~~~~~A~~~~~~li~~yP~S  123 (203)
T PF13525_consen   94 PGILRSDRDQTSTRKAIEEFEELIKRYPNS  123 (203)
T ss_dssp             HHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred             ccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence                      23458999999999999974

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.00  E-value=4.3e-06  Score=78.89  Aligned_cols=92  Identities=18%  Similarity=0.173  Sum_probs=83.4

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      +..-++|+.|+..|.+||+++|+++.++.+.+ ..+.+.++|..|+.-+.+||+++|.....+...|.++.. .+++.+|
T Consensus        14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa-~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A   91 (476)
T KOG0376|consen   14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRA-LAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKA   91 (476)
T ss_pred             hcccchHHHHHHHHHHHHhcCCcceeeechhh-hhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHH
Confidence            34457999999999999999999999999999 444468999999999999999999999999999977777 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      +..|++...+.|++
T Consensus        92 ~~~l~~~~~l~Pnd  105 (476)
T KOG0376|consen   92 LLDLEKVKKLAPND  105 (476)
T ss_pred             HHHHHHhhhcCcCc
Confidence            99999999999975

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.00  E-value=6.8e-06  Score=50.52  Aligned_cols=32  Identities=31%  Similarity=0.463  Sum_probs=15.0

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHH
Q 027439          142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAE  174 (223)
Q Consensus       142 y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~  174 (223)
                      |+++|+++|+|+.+|++||.++. ..|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence            44455555555555555553333 244444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.00  E-value=1.6e-05  Score=51.10  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD  196 (223)
Q Consensus       154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~  196 (223)
                      .++..+|.++. .+|++++|++.|+++++.+|+|+.++..++.
T Consensus         2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            56788996666 5899999999999999999999999998874

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.98  E-value=0.00015  Score=57.75  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=69.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 027439          132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~  205 (223)
                      .++...+...+++.++.+|+.   ..+...+|..++. .+++++|...|++++...|++   ..+...+|.+++. .|++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCH
Confidence            468888999999999999999   5667778877774 899999999999999988665   3567788988887 9999


Q ss_pred             HHHHHHHHHH
Q 027439          206 SRAESYFDQA  215 (223)
Q Consensus       206 eeAi~~fekA  215 (223)
                      ++|+..++++
T Consensus       102 d~Al~~L~~~  111 (145)
T PF09976_consen  102 DEALATLQQI  111 (145)
T ss_pred             HHHHHHHHhc
Confidence            9999999763

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.96  E-value=5.1e-05  Score=77.17  Aligned_cols=82  Identities=22%  Similarity=0.285  Sum_probs=72.6

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -|.+|.+.+++++|.+.|+++++++|+|+.++++||+++.. . +.++|++++.+|+..              ++. .++
T Consensus       122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~--------------~i~-~kq  184 (906)
T PRK14720        122 LAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYR--------------FIK-KKQ  184 (906)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHH--------------HHh-hhc
Confidence            45677788999999999999999999999999999977775 4 999999999999997              444 678


Q ss_pred             HHHHHHHHHHHHHhCCCCC
Q 027439          205 ASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn~  223 (223)
                      +..+..++++.++.+|+++
T Consensus       185 ~~~~~e~W~k~~~~~~~d~  203 (906)
T PRK14720        185 YVGIEEIWSKLVHYNSDDF  203 (906)
T ss_pred             chHHHHHHHHHHhcCcccc
Confidence            9999999999999999864

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.94  E-value=9.5e-06  Score=49.87  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=31.0

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          176 YCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       176 ~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      +|++||+++|+|+.+|..+|.++.. .|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence            4899999999999999999988887 999999973

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.94  E-value=8.8e-05  Score=65.71  Aligned_cols=70  Identities=20%  Similarity=0.151  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +....+..|..+....++|++|+..|++.+...|++   +.+++.+|.+++. .|++++|+.+|+++++..|++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s  213 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKS  213 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence            345556666555445689999999999999999998   5899999999988 999999999999999998874

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.93  E-value=0.00013  Score=59.09  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=72.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~----~~l~~lA~ll~~~~G~~eeA  208 (223)
                      ++.+.|++.|.+++.+-|.++.+|+|.|..+.. +++.++|++-+.+|+++..+..    .++.-.|. +|...|+.+.|
T Consensus        57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~-lyRl~g~dd~A  134 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGL-LYRLLGNDDAA  134 (175)
T ss_pred             cchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHhCchHHH
Confidence            378999999999999999999999999988886 7999999999999999976543    34455564 45559999999


Q ss_pred             HHHHHHHHHhC
Q 027439          209 ESYFDQAVKAA  219 (223)
Q Consensus       209 i~~fekAL~l~  219 (223)
                      ..-|+.|-++.
T Consensus       135 R~DFe~AA~LG  145 (175)
T KOG4555|consen  135 RADFEAAAQLG  145 (175)
T ss_pred             HHhHHHHHHhC
Confidence            99999987663

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.92  E-value=2.3e-05  Score=75.40  Aligned_cols=92  Identities=20%  Similarity=0.271  Sum_probs=72.8

Q ss_pred             ccccccCCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH---
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDG---  188 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLel--------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-----P~d~---  188 (223)
                      -|.+|...++|.+|+.+|++|+.+        +|.-+.++.+||..++ ..|+|++|..+|++|+++.     .+.+   
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~  325 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVA  325 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence            456777789999999999999975        4555678999995555 6899999999999999874     2233   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      ..+..++.++.. .+++++|+.+|++++++
T Consensus       326 ~~l~~~~~~~~~-~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  326 AQLSELAAILQS-MNEYEEAKKLLQKALKI  354 (508)
T ss_pred             HHHHHHHHHHHH-hcchhHHHHHHHHHHHH
Confidence            445555644555 99999999999999876

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.91  E-value=8.8e-06  Score=74.35  Aligned_cols=92  Identities=13%  Similarity=0.083  Sum_probs=73.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +++|+..+++++|.++|+++++++|.|.++....|.-++ ..++.+-|+.+|++.+.+.-.+++.+.++|-+++. .+++
T Consensus       297 ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-aqQ~  374 (478)
T KOG1129|consen  297 ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-AQQI  374 (478)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-hcch
Confidence            577777888888888888888888888888777775455 36788888888888888888888888888866655 7888


Q ss_pred             HHHHHHHHHHHHhC
Q 027439          206 SRAESYFDQAVKAA  219 (223)
Q Consensus       206 eeAi~~fekAL~l~  219 (223)
                      +-++.-|++|+...
T Consensus       375 D~~L~sf~RAlsta  388 (478)
T KOG1129|consen  375 DLVLPSFQRALSTA  388 (478)
T ss_pred             hhhHHHHHHHHhhc
Confidence            88888888887653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.91  E-value=2.8e-05  Score=69.68  Aligned_cols=87  Identities=21%  Similarity=0.222  Sum_probs=54.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA-SRAESYF  212 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~-eeAi~~f  212 (223)
                      .+.+|.-.|++..+..+.++.+++.+|. +...+++|++|+..+++|+..+|++++++.++..+... .|+. +.+.+++
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~-~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~~l  259 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAV-CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAERYL  259 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHH-HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHHHH
Confidence            5666677777766666666777767773 33356777777777777777777777777777755455 5655 5566666


Q ss_pred             HHHHHhCCCC
Q 027439          213 DQAVKAAPDD  222 (223)
Q Consensus       213 ekAL~l~Pdn  222 (223)
                      .++...+|++
T Consensus       260 ~qL~~~~p~h  269 (290)
T PF04733_consen  260 SQLKQSNPNH  269 (290)
T ss_dssp             HHCHHHTTTS
T ss_pred             HHHHHhCCCC
Confidence            6666666653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.90  E-value=7.5e-05  Score=75.43  Aligned_cols=72  Identities=14%  Similarity=0.050  Sum_probs=45.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~--gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      |+++...++.+.|+..+++++++||.++.++..||.+-...+  ..|.+|+.++.+|...+|+||.++..+|..
T Consensus       206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~  279 (1018)
T KOG2002|consen  206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANH  279 (1018)
T ss_pred             hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence            366666677777777777777777777766666664332211  235666666666666666666666555544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.89  E-value=3.5e-05  Score=77.71  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=56.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-  203 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n-~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-  203 (223)
                      |+.|...|||++|-++|.++++.+|++ ...+..+|..+. ++++++.|+.+|++.++.+|++..++..+|-++.. .+ 
T Consensus       314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~-~~~  391 (1018)
T KOG2002|consen  314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH-SAK  391 (1018)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh-hhh
Confidence            445555666666666666666666666 555555664444 35666666666666666666666666666643332 21 


Q ss_pred             ---CHHHHHHHHHHHHHhCCCC
Q 027439          204 ---DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ---~~eeAi~~fekAL~l~Pdn  222 (223)
                         ..++|..++.++++..|.|
T Consensus       392 ~~~~~d~a~~~l~K~~~~~~~d  413 (1018)
T KOG2002|consen  392 KQEKRDKASNVLGKVLEQTPVD  413 (1018)
T ss_pred             hhHHHHHHHHHHHHHHhccccc
Confidence               3456666666666655543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.86  E-value=6.3e-05  Score=71.32  Aligned_cols=93  Identities=20%  Similarity=0.208  Sum_probs=73.0

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      .-..+||+++|.+.|++++.-+.....+++|.| .-+..+++.++|+++|-+...+--++..++..+|.++-. ..+...
T Consensus       499 ~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aq  576 (840)
T KOG2003|consen  499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQ  576 (840)
T ss_pred             eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHH
Confidence            345578999999999999988888888888888 444567888888888888777777788888888876555 788888


Q ss_pred             HHHHHHHHHHhCCCC
Q 027439          208 AESYFDQAVKAAPDD  222 (223)
Q Consensus       208 Ai~~fekAL~l~Pdn  222 (223)
                      |+++|-++..+-|+|
T Consensus       577 aie~~~q~~slip~d  591 (840)
T KOG2003|consen  577 AIELLMQANSLIPND  591 (840)
T ss_pred             HHHHHHHhcccCCCC
Confidence            888888887776664

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=2.9e-05  Score=72.51  Aligned_cols=96  Identities=13%  Similarity=0.091  Sum_probs=83.0

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH------------HH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV------------LS  192 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~------------l~  192 (223)
                      ++.++.-.+++++|...--..+++++.|..++.-.+.++|. ..+.++|+.+|++++.++|+....            +.
T Consensus       175 ka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k  253 (486)
T KOG0550|consen  175 KAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY-NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK  253 (486)
T ss_pred             hhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc-ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence            44566667899999999999999999999999999988885 899999999999999999987543            33


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .-|+-.++ +|++.+|.+.|..||.++|+|
T Consensus       254 ~~gN~~fk-~G~y~~A~E~Yteal~idP~n  282 (486)
T KOG0550|consen  254 ERGNDAFK-NGNYRKAYECYTEALNIDPSN  282 (486)
T ss_pred             hhhhhHhh-ccchhHHHHHHHHhhcCCccc
Confidence            34444788 999999999999999999986

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.83  E-value=5.6e-05  Score=45.01  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+++.+|.+++. .|++++|+++|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence            344555554444 555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.82  E-value=9e-05  Score=70.29  Aligned_cols=93  Identities=15%  Similarity=0.095  Sum_probs=61.4

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      +|.+.||-.+|.+|+-..++..|-|..+.-.+|. +|....-.++|+.+|++|-.+.|+......+.|. +++..|+|++
T Consensus       601 lydqegdksqafq~~ydsyryfp~nie~iewl~a-yyidtqf~ekai~y~ekaaliqp~~~kwqlmias-c~rrsgnyqk  678 (840)
T KOG2003|consen  601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA-YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS-CFRRSGNYQK  678 (840)
T ss_pred             HhhcccchhhhhhhhhhcccccCcchHHHHHHHH-HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH-HHHhcccHHH
Confidence            3334444444444444444444444444444442 2222334589999999999999988777777775 4555999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 027439          208 AESYFDQAVKAAPDD  222 (223)
Q Consensus       208 Ai~~fekAL~l~Pdn  222 (223)
                      |++.|+..-...|+|
T Consensus       679 a~d~yk~~hrkfped  693 (840)
T KOG2003|consen  679 AFDLYKDIHRKFPED  693 (840)
T ss_pred             HHHHHHHHHHhCccc
Confidence            999999998888876

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.82  E-value=8.1e-05  Score=75.54  Aligned_cols=91  Identities=22%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ--SHKDASRA  208 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~--~~G~~eeA  208 (223)
                      .+.+|++|++..+++++.||+|-.++..+|.++....++.++|.++|-.|.+++|++.-+|..++.++-.  .--+++++
T Consensus        14 ~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~   93 (1238)
T KOG1127|consen   14 RNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRA   93 (1238)
T ss_pred             hhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHh
Confidence            4679999999999999999999999999998888633449999999999999999999999999976544  23468899


Q ss_pred             HHHHHHHHHhCCC
Q 027439          209 ESYFDQAVKAAPD  221 (223)
Q Consensus       209 i~~fekAL~l~Pd  221 (223)
                      -..|++++...++
T Consensus        94 ~~~yq~~~l~le~  106 (1238)
T KOG1127|consen   94 AKCYQRAVLILEN  106 (1238)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999887664

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.79  E-value=0.00012  Score=66.67  Aligned_cols=89  Identities=19%  Similarity=0.203  Sum_probs=76.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~-~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      ...+.++|...+.+|++.||+++.+-..+|++.. .+|+|++|++.++++++.||+.. .++-.+..+ |...|+.++.+
T Consensus       192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~-Y~~lg~~~~~~  269 (389)
T COG2956         192 ASSDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC-YAQLGKPAEGL  269 (389)
T ss_pred             hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHH-HHHhCCHHHHH
Confidence            3468899999999999999999999999997776 58999999999999999999864 666666654 44499999999


Q ss_pred             HHHHHHHHhCCC
Q 027439          210 SYFDQAVKAAPD  221 (223)
Q Consensus       210 ~~fekAL~l~Pd  221 (223)
                      ..+.++.+..++
T Consensus       270 ~fL~~~~~~~~g  281 (389)
T COG2956         270 NFLRRAMETNTG  281 (389)
T ss_pred             HHHHHHHHccCC
Confidence            999999887664

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.79  E-value=5.7e-05  Score=65.76  Aligned_cols=93  Identities=12%  Similarity=0.091  Sum_probs=78.0

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      +|.+.|-++-|.--|.+++.+.|+-+.+++-+|.++. ..++|+.|.+.|.-.+++||.+.-++.+.|..+|- -|+++-
T Consensus        74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~L  151 (297)
T COG4785          74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKL  151 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHh
Confidence            4555667778888889999999999999999995555 47999999999999999999988888888866666 899999


Q ss_pred             HHHHHHHHHHhCCCC
Q 027439          208 AESYFDQAVKAAPDD  222 (223)
Q Consensus       208 Ai~~fekAL~l~Pdn  222 (223)
                      |.+.|.+-.+.+|+|
T Consensus       152 Aq~d~~~fYQ~D~~D  166 (297)
T COG4785         152 AQDDLLAFYQDDPND  166 (297)
T ss_pred             hHHHHHHHHhcCCCC
Confidence            999999988888876

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.77  E-value=1.7e-05  Score=56.10  Aligned_cols=57  Identities=21%  Similarity=0.251  Sum_probs=46.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQAD-------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILM  183 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeld-------P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l  183 (223)
                      |.+|...+++++|+.+|++++++.       |.-+.++.++|.++. ..|++++|++++++++++
T Consensus        12 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   12 ARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence            456778899999999999999752       223667999996666 589999999999999986

...

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00015  Score=64.18  Aligned_cols=90  Identities=16%  Similarity=0.220  Sum_probs=76.4

Q ss_pred             cCCCChHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQ--------ADPRNP----------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL  191 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLe--------ldP~n~----------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l  191 (223)
                      +..++|.+|...|+.|+-        ..|..+          ..+.||+.++. ..++|-++++.|...+..+|.|..++
T Consensus       189 fk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~  267 (329)
T KOG0545|consen  189 FKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAY  267 (329)
T ss_pred             hhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            345799999999999875        245443          45779997776 47999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       192 ~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +..|.+... .=+.++|.+-|+++|+++|.
T Consensus       268 frRakAhaa-~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  268 FRRAKAHAA-VWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHHHHHHHh-hcCHHHHHHHHHHHHhcChh
Confidence            999988776 67899999999999999984

>PRK15331 chaperone protein SicA; Provisional

Probab=97.75  E-value=0.00016  Score=60.01  Aligned_cols=74  Identities=14%  Similarity=0.016  Sum_probs=64.0

Q ss_pred             hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 027439          148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       148 ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn~  223 (223)
                      +.++.......+|.-+| ..|++++|+.+|+-+...+|.+++.+..+|.++.. +++|++|+..|-.|..++++|.
T Consensus        32 is~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             CCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCC
Confidence            34555666778887777 48999999999999999999999999999977666 9999999999999999988763

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.75  E-value=0.00024  Score=55.92  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      .+++++| +.+...|+.++|+.+|++|+....+.   ..++..+|..+.. .|++++|+..+++++...|+
T Consensus         2 ~~~~~~A-~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    2 RALYELA-WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             chHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCC
Confidence            4577888 45557899999999999999986655   4677888877777 99999999999999998887

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.70  E-value=8.3e-05  Score=44.63  Aligned_cols=32  Identities=28%  Similarity=0.323  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 027439          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPN  186 (223)
Q Consensus       154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~  186 (223)
                      .+|.++|.++. .++++++|+.+|++|++++|+
T Consensus         2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence            34555554333 355666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.68  E-value=0.00023  Score=65.23  Aligned_cols=96  Identities=11%  Similarity=0.011  Sum_probs=75.9

Q ss_pred             CccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439          124 RWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       124 ~gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G  203 (223)
                      +.|++|...|-+.+|++.++..++..|. ++.+.-++++|. +..+...|+..+.+.+...|.|...+...|.++-. .+
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~-ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~  304 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQ-RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA-ME  304 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHH-HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HH
Confidence            4678888889999999999998888776 555556775554 57788888888888888888888888888877666 78


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++++|.++|+.+++.+|.|
T Consensus       305 ~~~~a~~lYk~vlk~~~~n  323 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPIN  323 (478)
T ss_pred             hHHHHHHHHHHHHhcCCcc
Confidence            8888888888888887765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.67  E-value=9.4e-05  Score=44.40  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       188 ~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.+|..+|.+++. ++++++|+..|++|++++|+|
T Consensus         1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence            4678999988887 999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.66  E-value=9.1e-05  Score=73.03  Aligned_cols=94  Identities=15%  Similarity=0.124  Sum_probs=73.8

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------HHHhCCHHHHHHHHHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFL---------------------------KEARGDLLKAEEYCARA  180 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l---------------------------~~~~gdyeeA~~~~ekA  180 (223)
                      +|...|+..+|..+..+-++ .|.++..|..+|.++                           ..++++|+++.+++++.
T Consensus       433 CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~s  511 (777)
T KOG1128|consen  433 CYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERS  511 (777)
T ss_pred             HHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHH
Confidence            34445666777777777677 455555555555442                           11357899999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 027439          181 ILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       181 L~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn~  223 (223)
                      ++++|-....|+.+|-+.++ .++++.|..+|.+.+.++|+++
T Consensus       512 l~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~  553 (777)
T KOG1128|consen  512 LEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNA  553 (777)
T ss_pred             hhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCch
Confidence            99999999999999987777 9999999999999999999985

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.65  E-value=0.00015  Score=43.12  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 027439          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND  187 (223)
Q Consensus       153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d  187 (223)
                      +.++..+|.+++ .++++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence            467889997666 5899999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.62  E-value=0.0003  Score=62.51  Aligned_cols=86  Identities=17%  Similarity=0.259  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD  213 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fe  213 (223)
                      ..+.|...|.+|.+..+-+..+|..+|..-+...++.+.|..+|+++++..|++..+|..|.+.+.. .++.+.|+..|+
T Consensus        16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lfe   94 (280)
T PF05843_consen   16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALFE   94 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence            4677788888887666666777777774434324566668888888888888888888888877766 778888888888


Q ss_pred             HHHHhCC
Q 027439          214 QAVKAAP  220 (223)
Q Consensus       214 kAL~l~P  220 (223)
                      +++..-|
T Consensus        95 r~i~~l~  101 (280)
T PF05843_consen   95 RAISSLP  101 (280)
T ss_dssp             HHCCTSS
T ss_pred             HHHHhcC
Confidence            8775533

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.61  E-value=0.00016  Score=70.53  Aligned_cols=89  Identities=10%  Similarity=0.043  Sum_probs=67.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      .|+-++|..+.+.+++.|+.....|..+| .++...++|++|+++|+.|+.++|+|-.+|..++.+ ..+.++++-....
T Consensus        54 lg~~~ea~~~vr~glr~d~~S~vCwHv~g-l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL-Q~QmRd~~~~~~t  131 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRNDLKSHVCWHVLG-LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL-QIQMRDYEGYLET  131 (700)
T ss_pred             ccchHHHHHHHHHHhccCcccchhHHHHH-HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHHHhhhhHHHH
Confidence            46778888888888888888888888888 444346788888888888888888888888888844 4447888888877


Q ss_pred             HHHHHHhCCCC
Q 027439          212 FDQAVKAAPDD  222 (223)
Q Consensus       212 fekAL~l~Pdn  222 (223)
                      -.+.+++.|.+
T Consensus       132 r~~LLql~~~~  142 (700)
T KOG1156|consen  132 RNQLLQLRPSQ  142 (700)
T ss_pred             HHHHHHhhhhh
Confidence            77887777653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.60  E-value=0.00027  Score=69.07  Aligned_cols=89  Identities=10%  Similarity=0.084  Sum_probs=71.7

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      +|....+|++|++||+.|+.++|+|..+|..++ .+..+.++|+-...--.+.++++|.+-..|..+|...+. .|++..
T Consensus        84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls-lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-~g~y~~  161 (700)
T KOG1156|consen   84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS-LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-LGEYKM  161 (700)
T ss_pred             HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHH
Confidence            345567889999999999999999999888888 455457888888888888888888888888888877777 888888


Q ss_pred             HHHHHHHHHHh
Q 027439          208 AESYFDQAVKA  218 (223)
Q Consensus       208 Ai~~fekAL~l  218 (223)
                      |...++...+.
T Consensus       162 A~~il~ef~~t  172 (700)
T KOG1156|consen  162 ALEILEEFEKT  172 (700)
T ss_pred             HHHHHHHHHHh
Confidence            88777665543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.60  E-value=0.00043  Score=68.65  Aligned_cols=87  Identities=17%  Similarity=0.242  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPNDGNVLSMYGDLIWQSHKDASRAESYFD  213 (223)
Q Consensus       135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-dP~d~~~l~~lA~ll~~~~G~~eeAi~~fe  213 (223)
                      ..++++.++++++.+|.|+.+.+.++..+. .+++.+.|.+++++++++ .-+++.+|..+|-++-. .+++.+|+...+
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq~A-~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa-~kr~~~Al~vvd  537 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQYA-EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA-QKRLKEALDVVD  537 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence            467999999999999999999999996555 479999999999999999 55678899999955555 999999999999


Q ss_pred             HHHHhCCCCC
Q 027439          214 QAVKAAPDDW  223 (223)
Q Consensus       214 kAL~l~Pdn~  223 (223)
                      .+++..|+|+
T Consensus       538 ~al~E~~~N~  547 (799)
T KOG4162|consen  538 AALEEFGDNH  547 (799)
T ss_pred             HHHHHhhhhh
Confidence            9999988864

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.0002  Score=65.48  Aligned_cols=95  Identities=13%  Similarity=0.107  Sum_probs=80.9

Q ss_pred             CCccccccCCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027439          123 GRWGSWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLI  198 (223)
Q Consensus       123 ~~gg~~Y~~~gd~~eA~~~y~~aLeldP~----n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll  198 (223)
                      ..-|.-|.+..+|..|+.+|.+.|+..-.    |+..|.|+|.+.+ ..++|-.|+.-|.+|+.++|.+..++++-|.++
T Consensus        85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL  163 (390)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence            34566777788999999999999987544    4567899996666 489999999999999999999999999999888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC
Q 027439          199 WQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       199 ~~~~G~~eeAi~~fekAL~l~  219 (223)
                      +. +.++.+|..+++..++++
T Consensus       164 ~e-Le~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  164 LE-LERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HH-HHHHHHHHHHHhhhhhhh
Confidence            88 999999999888877664

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00026  Score=66.43  Aligned_cols=95  Identities=20%  Similarity=0.235  Sum_probs=80.2

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------------------------------HHHhCCH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFL----------------------------------KEARGDL  170 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l----------------------------------~~~~gdy  170 (223)
                      -+.+|...|++++|+..|+++.-+||++....-.||..+                                  +. .++|
T Consensus       238 lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~-~K~~  316 (564)
T KOG1174|consen  238 LGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD-EKKF  316 (564)
T ss_pred             HhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh-hhhH
Confidence            567888889999999999999999999887766666332                                  22 3567


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          171 LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       171 eeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      ..|+.+-+|+|..+|++..++..-|.++.. .++.++|+-.|+.|..+.|-
T Consensus       317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~  366 (564)
T KOG1174|consen  317 ERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPY  366 (564)
T ss_pred             HHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchh
Confidence            889999999999999999999999988777 99999999999999888774

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.58  E-value=0.00063  Score=62.81  Aligned_cols=88  Identities=17%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      ||...|++.....+++.|-++.++..+|.++. ..++..+|+.-+..+-++..++...++.++.++|. .|+.+.++...
T Consensus       169 GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i-~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vgd~~~sL~~i  246 (504)
T KOG0624|consen  169 GDCQNAIEMITHLLEIQPWDASLRQARAKCYI-AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VGDAENSLKEI  246 (504)
T ss_pred             CchhhHHHHHHHHHhcCcchhHHHHHHHHHHH-hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hhhHHHHHHHH
Confidence            48899999999999999999999999997666 58999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHhCCCC
Q 027439          213 DQAVKAAPDD  222 (223)
Q Consensus       213 ekAL~l~Pdn  222 (223)
                      +..|+++|++
T Consensus       247 RECLKldpdH  256 (504)
T KOG0624|consen  247 RECLKLDPDH  256 (504)
T ss_pred             HHHHccCcch
Confidence            9999999985

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.58  E-value=5e-05  Score=54.81  Aligned_cols=52  Identities=17%  Similarity=0.325  Sum_probs=44.1

Q ss_pred             hCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          167 RGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       167 ~gdyeeA~~~~ekAL~ldP~--d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      +++|++|+.+++++++.+|.  +..+++.+|.+++. .|++++|+.++++ +..++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~   55 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDP   55 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCC
Confidence            68999999999999999995  46677778999999 9999999999988 55444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.53  E-value=0.00056  Score=66.12  Aligned_cols=87  Identities=22%  Similarity=0.126  Sum_probs=76.4

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...|++++|+++.+++|+..|..++.+...|+++. +.|++++|.+..+.|-.+|+.|-.+-...+..+++ .|+.+
T Consensus       202 qhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e  279 (517)
T PF12569_consen  202 QHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIE  279 (517)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHH
Confidence            33456799999999999999999999999999998888 58999999999999999999988888777766666 99999


Q ss_pred             HHHHHHHHH
Q 027439          207 RAESYFDQA  215 (223)
Q Consensus       207 eAi~~fekA  215 (223)
                      +|+..+..-
T Consensus       280 ~A~~~~~~F  288 (517)
T PF12569_consen  280 EAEKTASLF  288 (517)
T ss_pred             HHHHHHHhh
Confidence            999877654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.53  E-value=0.0024  Score=50.42  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=62.6

Q ss_pred             CChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRN----------------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n----------------------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~  190 (223)
                      ++.+.++..+++++.+...+                      ..++..++..+. ..+++++|+..+++++..+|-+-.+
T Consensus        20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~   98 (146)
T PF03704_consen   20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALL-EAGDYEEALRLLQRALALDPYDEEA   98 (146)
T ss_dssp             T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHH
Confidence            47788888888888864321                      233455554444 5799999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          191 LSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       191 l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +..+-.++.. .|++.+|+..|++....
T Consensus        99 ~~~lm~~~~~-~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   99 YRLLMRALAA-QGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence            9999988888 99999999999987543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.53  E-value=0.00016  Score=64.87  Aligned_cols=94  Identities=16%  Similarity=0.024  Sum_probs=73.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g--dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      .+|...++++.|.+.++++.+.+.+...+...-|++.. ..|  .+.+|..+|+......+..+.++..+|.+... +|+
T Consensus       139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~  216 (290)
T PF04733_consen  139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGH  216 (290)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCC
Confidence            45566789999999999999998887776666664333 444  69999999999888888899999999977666 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      +++|...+++|+..+|+|
T Consensus       217 ~~eAe~~L~~al~~~~~~  234 (290)
T PF04733_consen  217 YEEAEELLEEALEKDPND  234 (290)
T ss_dssp             HHHHHHHHHHHCCC-CCH
T ss_pred             HHHHHHHHHHHHHhccCC
Confidence            999999999999888864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.51  E-value=0.00095  Score=58.29  Aligned_cols=69  Identities=13%  Similarity=0.011  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL---SMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l---~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+..+...|..++ ..++|++|++.|++++...|..+.+.   ..+|.+++. .+++++|+.+|++.++..|++
T Consensus        31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~  102 (243)
T PRK10866         31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTH  102 (243)
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCC
Confidence            4444556665555 47999999999999999999987665   788888888 999999999999999999986

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.43  E-value=0.001  Score=59.03  Aligned_cols=88  Identities=17%  Similarity=0.249  Sum_probs=74.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~---~~l~~lA~ll~~~~G~~eeA  208 (223)
                      .++.+.|...|+++++..|.+..+|..|..++. ..++.+.|..+|++++..-|.+.   .+|..+...-.. .|+.+..
T Consensus        49 ~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~-~Gdl~~v  126 (280)
T PF05843_consen   49 NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK-YGDLESV  126 (280)
T ss_dssp             CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH-HS-HHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-cCCHHHH
Confidence            467777999999999999999999999998888 58999999999999999877665   578888877777 8999999


Q ss_pred             HHHHHHHHHhCCC
Q 027439          209 ESYFDQAVKAAPD  221 (223)
Q Consensus       209 i~~fekAL~l~Pd  221 (223)
                      ...++++.+..|+
T Consensus       127 ~~v~~R~~~~~~~  139 (280)
T PF05843_consen  127 RKVEKRAEELFPE  139 (280)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999998776

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.38  E-value=0.0031  Score=48.14  Aligned_cols=92  Identities=23%  Similarity=0.280  Sum_probs=64.5

Q ss_pred             cccCCCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADP---RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP---~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~-d~~~l~~lA~ll~~~~G  203 (223)
                      .|...+++++|..+|++++..+|   .....+..++..+. ..+++++|+..+.+++...++ ....+..++..+.. .+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  216 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG  216 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence            45566788888888888877666   34444445553333 357888888888888888887 57777777766555 77


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 027439          204 DASRAESYFDQAVKAAPD  221 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pd  221 (223)
                      +++.|+..+.+++...|.
T Consensus       217 ~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         217 KYEEALEYYEKALELDPD  234 (291)
T ss_pred             cHHHHHHHHHHHHhhCcc
Confidence            788888888888777664

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.37  E-value=0.00094  Score=65.74  Aligned_cols=89  Identities=15%  Similarity=0.096  Sum_probs=74.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      +++.++|+.+++++++..|+...+|.++|.++. ..++.+.|.+.|...++..|+.+..|..++.+--+ .|+.-+|...
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-~~~~~rAR~i  741 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-DGQLVRARSI  741 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-hcchhhHHHH
Confidence            467889999999999999999999999996655 47888888888888888888888888888876555 7788888888


Q ss_pred             HHHHHHhCCCC
Q 027439          212 FDQAVKAAPDD  222 (223)
Q Consensus       212 fekAL~l~Pdn  222 (223)
                      ++++...||.|
T Consensus       742 ldrarlkNPk~  752 (913)
T KOG0495|consen  742 LDRARLKNPKN  752 (913)
T ss_pred             HHHHHhcCCCc
Confidence            88888888875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.37  E-value=0.00016  Score=46.39  Aligned_cols=36  Identities=11%  Similarity=0.149  Sum_probs=33.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYAR  161 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~  161 (223)
                      ++.|...|++++|+++|+++++.+|+|+.+|..+|.
T Consensus         8 a~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    8 ARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            567888999999999999999999999999998873

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.35  E-value=0.00076  Score=66.37  Aligned_cols=95  Identities=19%  Similarity=0.200  Sum_probs=85.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |++|++.++.+.|.+.|...++..|+....|..++ -+-++.+...+|...++++...||++...|.-.-.+-+. .|+.
T Consensus       692 GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa-kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR-~gn~  769 (913)
T KOG0495|consen  692 GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA-KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR-AGNK  769 (913)
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH-HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH-cCCH
Confidence            35777888999999999999999999999999999 566678899999999999999999999998777766677 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      +.|...+.|||+.-|++
T Consensus       770 ~~a~~lmakALQecp~s  786 (913)
T KOG0495|consen  770 EQAELLMAKALQECPSS  786 (913)
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            99999999999998864

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.33  E-value=0.00076  Score=56.81  Aligned_cols=62  Identities=15%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----------RGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~----------~gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      -+++|+.-|+++|.++|+...++.++|+++...          ..-|++|..+|++|+..+|+|...+..+-
T Consensus        50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            468899999999999999999999999887541          12379999999999999999987665554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.30  E-value=8.2e-05  Score=68.04  Aligned_cols=87  Identities=15%  Similarity=0.094  Sum_probs=77.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      .|.++.|++.|..+|+++|..+.++...+.++. .++....|++-|..|++++|+...-+-..+.+... +|++++|..+
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~aa~d  204 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEEAAHD  204 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHHHHHH
Confidence            478999999999999999999999999997766 58999999999999999999988777777766666 9999999999


Q ss_pred             HHHHHHhCC
Q 027439          212 FDQAVKAAP  220 (223)
Q Consensus       212 fekAL~l~P  220 (223)
                      |..|.+++-
T Consensus       205 l~~a~kld~  213 (377)
T KOG1308|consen  205 LALACKLDY  213 (377)
T ss_pred             HHHHHhccc
Confidence            999998853

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.29  E-value=0.0021  Score=61.49  Aligned_cols=86  Identities=15%  Similarity=0.228  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (223)
Q Consensus       136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA  215 (223)
                      ..-..+|++|+...+.++.+|.++..++. +.+.+.+-...|.+++...|+++++|..-|.-.+..+-+.+.|.+.|.++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            55678899999999999999999997766 45779999999999999999999999988887888666799999999999


Q ss_pred             HHhCCCC
Q 027439          216 VKAAPDD  222 (223)
Q Consensus       216 L~l~Pdn  222 (223)
                      |..+|++
T Consensus       167 LR~npds  173 (568)
T KOG2396|consen  167 LRFNPDS  173 (568)
T ss_pred             hhcCCCC
Confidence            9999975

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.26  E-value=0.0015  Score=57.73  Aligned_cols=96  Identities=14%  Similarity=0.036  Sum_probs=67.5

Q ss_pred             ccccccCC-CChHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CHHH--H
Q 027439          125 WGSWDPNN-HGNNSTDLYYQKMIQADP--RN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNV--L  191 (223)
Q Consensus       125 gg~~Y~~~-gd~~eA~~~y~~aLeldP--~n----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~----d~~~--l  191 (223)
                      .|.+|+.. +++++|+++|++|+++..  +.    ..++.++|.++. ..++|++|+.+|+++....-+    ...+  +
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            35677777 899999999999998632  22    345678885555 689999999999999885422    1222  3


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       192 ~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +..+.+++...||+..|...|++....+|.
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            334556666699999999999999888774

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.22  E-value=0.0012  Score=69.23  Aligned_cols=93  Identities=22%  Similarity=0.294  Sum_probs=83.2

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCC
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~--d~~~l~~lA~ll~~~~G~  204 (223)
                      ..|+..+.+++|.++|+++++..-....+|..|+.++. ++.+-++|...+++|++.=|.  +..+....|.+.|+ .|+
T Consensus      1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GD 1615 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGD 1615 (1710)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCC
Confidence            35667789999999999999998888999999998888 577889999999999999998  78888999988898 999


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 027439          205 ASRAESYFDQAVKAAPD  221 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pd  221 (223)
                      .++++.+|+-.+...|.
T Consensus      1616 aeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred             chhhHHHHHHHHhhCcc
Confidence            99999999999988774

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.22  E-value=0.0013  Score=67.21  Aligned_cols=90  Identities=13%  Similarity=0.087  Sum_probs=75.4

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      -.|..-+++.+|+..|+-+++.+|.+...|..+|.+|. ..|+|.-|.+.|.||..++|.+..+.+.-|.+... .|+|.
T Consensus       570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~-~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-~GkYk  647 (1238)
T KOG1127|consen  570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP-ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-NGKYK  647 (1238)
T ss_pred             ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH-hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-hhhHH
Confidence            34556678889999999999999999999999997777 47999999999999999999988888888855555 89999


Q ss_pred             HHHHHHHHHHHh
Q 027439          207 RAESYFDQAVKA  218 (223)
Q Consensus       207 eAi~~fekAL~l  218 (223)
                      +|+..++..++.
T Consensus       648 eald~l~~ii~~  659 (1238)
T KOG1127|consen  648 EALDALGLIIYA  659 (1238)
T ss_pred             HHHHHHHHHHHH
Confidence            999988887654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.20  E-value=0.0032  Score=53.91  Aligned_cols=88  Identities=14%  Similarity=0.120  Sum_probs=69.8

Q ss_pred             CCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHH
Q 027439          132 NHGNNSTDLYYQKMIQ-ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLe-ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~--d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      .|++.+|+..|++++. +.-+++..+..+|+..+. .+++..|...+++..+.+|.  .++.+..++.++-. .|++..|
T Consensus       102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~A  179 (251)
T COG4700         102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADA  179 (251)
T ss_pred             hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhH
Confidence            4688888888888884 667778888888888885 78888888888888888875  45666677777766 8888888


Q ss_pred             HHHHHHHHHhCCC
Q 027439          209 ESYFDQAVKAAPD  221 (223)
Q Consensus       209 i~~fekAL~l~Pd  221 (223)
                      ...|+.++...|+
T Consensus       180 esafe~a~~~ypg  192 (251)
T COG4700         180 ESAFEVAISYYPG  192 (251)
T ss_pred             HHHHHHHHHhCCC
Confidence            8888888887664

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.20  E-value=0.0072  Score=46.06  Aligned_cols=90  Identities=18%  Similarity=0.223  Sum_probs=78.9

Q ss_pred             cCCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~-n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      ...++++.|+..+.++++..+. ....+..++..+. ..+++++|...+.+++...|.....+..++..+. ..+.+++|
T Consensus       178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  255 (291)
T COG0457         178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEA  255 (291)
T ss_pred             HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHH
Confidence            3456899999999999999999 6888999996666 5789999999999999999987778888887777 58899999


Q ss_pred             HHHHHHHHHhCCC
Q 027439          209 ESYFDQAVKAAPD  221 (223)
Q Consensus       209 i~~fekAL~l~Pd  221 (223)
                      ...+.+++...|.
T Consensus       256 ~~~~~~~~~~~~~  268 (291)
T COG0457         256 LEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHhCcc
Confidence            9999999988774

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.14  E-value=0.00098  Score=39.68  Aligned_cols=31  Identities=29%  Similarity=0.417  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      ++..+|.++.. .|++++|+.+|+++++++|+
T Consensus         3 ~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQ-LGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence            44555544444 55555555555555555553

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.12  E-value=0.0048  Score=52.01  Aligned_cols=69  Identities=19%  Similarity=0.169  Sum_probs=55.0

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+..+...|...+ ..|+|.+|+..|++++...|..   +.+++.+|.+++. .+++++|+..|++.++..|++
T Consensus         4 ~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~   75 (203)
T PF13525_consen    4 TAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNS   75 (203)
T ss_dssp             -HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence            3556677886666 4899999999999999998875   5778899999998 999999999999999999975

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.06  E-value=0.0072  Score=56.26  Aligned_cols=83  Identities=22%  Similarity=0.195  Sum_probs=70.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      +++..-++..++.++..|+++..+..+|..++ +++.+.+|..+++.|+...|. ...+..+|.++-. .|+.++|.+.+
T Consensus       308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~-~g~~~~A~~~r  384 (400)
T COG3071         308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPS-ASDYAELADALDQ-LGEPEEAEQVR  384 (400)
T ss_pred             CCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHH-cCChHHHHHHH
Confidence            46788888999999999999999999996555 689999999999999999884 5556678877766 99999999999


Q ss_pred             HHHHHh
Q 027439          213 DQAVKA  218 (223)
Q Consensus       213 ekAL~l  218 (223)
                      +.++.+
T Consensus       385 ~e~L~~  390 (400)
T COG3071         385 REALLL  390 (400)
T ss_pred             HHHHHH
Confidence            999855

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.06  E-value=0.00091  Score=59.18  Aligned_cols=83  Identities=20%  Similarity=0.223  Sum_probs=50.0

Q ss_pred             ChHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQAD--PRN----PLLLSNYARFLKEAR-GDLLKAEEYCARAILMSPN--D----GNVLSMYGDLIWQ  200 (223)
Q Consensus       134 d~~eA~~~y~~aLeld--P~n----~~~l~nlA~~l~~~~-gdyeeA~~~~ekAL~ldP~--d----~~~l~~lA~ll~~  200 (223)
                      ++++|+.+|++++++.  -++    +.++.++|.++. .. +++++|+++|++|+++...  .    ...+..+|.++..
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence            6777777777777652  222    345666674443 34 6888888888888776321  1    2344556655555


Q ss_pred             HcCCHHHHHHHHHHHHHh
Q 027439          201 SHKDASRAESYFDQAVKA  218 (223)
Q Consensus       201 ~~G~~eeAi~~fekAL~l  218 (223)
                       .++|++|+..|+++...
T Consensus       168 -l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  168 -LGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             -TT-HHHHHHHHHHHHHT
T ss_pred             -hCCHHHHHHHHHHHHHH
Confidence             77888888888877654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.011  Score=53.22  Aligned_cols=88  Identities=17%  Similarity=0.137  Sum_probs=73.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHH--------------------------------
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCA--------------------------------  178 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~e--------------------------------  178 (223)
                      ..+++.+|...|..++..+|.+..+...|+.++.. .|+.+.|...+.                                
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~  224 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD  224 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence            45799999999999999999999999999977764 677766555443                                


Q ss_pred             --HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          179 --RAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       179 --kAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                        +.+..+|+|.++.+.+|..+.. .|+.++|.+.+-..+..+.
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcc
Confidence              3445689999999999988777 9999999999988887753

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.95  E-value=0.0079  Score=53.14  Aligned_cols=90  Identities=20%  Similarity=0.230  Sum_probs=69.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHc---
Q 027439          132 NHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV---LSMYGDLIWQSH---  202 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~---~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~---l~~lA~ll~~~~---  202 (223)
                      .|++++|+..|+.+....|..+   .+...++.+++ +.++|++|+...++.+.+.|+++++   ++..+...+...   
T Consensus        47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~  125 (254)
T COG4105          47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV  125 (254)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence            5899999999999999988774   67778887777 5899999999999999999987654   444443333211   


Q ss_pred             -CC---HHHHHHHHHHHHHhCCCC
Q 027439          203 -KD---ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 -G~---~eeAi~~fekAL~l~Pdn  222 (223)
                       .|   ..+|+..|+..++..|+.
T Consensus       126 ~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105         126 TRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             ccCHHHHHHHHHHHHHHHHHCCCC
Confidence             22   337888889999998874

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.89  E-value=0.0054  Score=59.35  Aligned_cols=66  Identities=24%  Similarity=0.209  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +++.+|.++. ..|++++|++++++||+..|..++.+...|.++-. .|++++|..+++.|-.+|+.|
T Consensus       196 ~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  196 TLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhh
Confidence            4456675444 68999999999999999999999999999987766 999999999999999998765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.82  E-value=0.0026  Score=37.76  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 027439          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPND  187 (223)
Q Consensus       154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d  187 (223)
                      .+|..+|.++. .++++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence            56889996666 5899999999999999999954

...

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.0015  Score=60.65  Aligned_cols=94  Identities=12%  Similarity=0.067  Sum_probs=65.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------------HhCCC-----
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAI--------------LMSPN-----  186 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL--------------~ldP~-----  186 (223)
                      +.+|...|||++|...|..+.+.+.-+..++.++| +++..+|.|.+|...-.+|-              +++..     
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLA-cc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~  142 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLA-CCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT  142 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHH-HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence            35667778999999999999888888888889999 44445889988877655432              12110     


Q ss_pred             -------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          187 -------DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       187 -------d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                             ..+-...+|.+.|. .-.|++|++.|++++.-+|+
T Consensus       143 fh~~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~e  183 (557)
T KOG3785|consen  143 FHSSLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPE  183 (557)
T ss_pred             HHHHHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChh
Confidence                   01112335555666 56788999999999887764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.80  E-value=0.015  Score=47.21  Aligned_cols=68  Identities=15%  Similarity=0.094  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +..+.+-|.... ..++|.+|++.|+.+....|-.   ..+...++.++++ .+++++|+..+++-++++|.+
T Consensus        10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~h   80 (142)
T PF13512_consen   10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTH   80 (142)
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            445566675555 4799999999999999988764   5778889999999 999999999999999999975

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.75  E-value=0.0052  Score=60.10  Aligned_cols=91  Identities=20%  Similarity=0.169  Sum_probs=78.9

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLL-LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~-l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      ...|+...|++|+..|+-..|....+ +.++|..+.. -+-...|-.++.+++.++-..|-.++.+|.+++. +++.+.|
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~~a  695 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNISGA  695 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhHHH
Confidence            34568899999999999999876543 5688877764 6778899999999999998889999999998888 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      ++.|++|++++|++
T Consensus       696 ~~~~~~a~~~~~~~  709 (886)
T KOG4507|consen  696 LEAFRQALKLTTKC  709 (886)
T ss_pred             HHHHHHHHhcCCCC
Confidence            99999999999875

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.74  E-value=0.0066  Score=60.02  Aligned_cols=90  Identities=8%  Similarity=-0.037  Sum_probs=69.7

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -.+.|.+.|++++|.+.++++ ...| +..+|..+...+. ..++++.|...++++++++|++...+..+.+++.. .|+
T Consensus       468 li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-~G~  543 (697)
T PLN03081        468 MIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-SGR  543 (697)
T ss_pred             HHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-CCC
Confidence            334455667888888888764 2334 3566777776666 47899999999999999999988888888887777 999


Q ss_pred             HHHHHHHHHHHHHh
Q 027439          205 ASRAESYFDQAVKA  218 (223)
Q Consensus       205 ~eeAi~~fekAL~l  218 (223)
                      +++|.+.+++..+.
T Consensus       544 ~~~A~~v~~~m~~~  557 (697)
T PLN03081        544 QAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999887654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.0042  Score=55.69  Aligned_cols=90  Identities=16%  Similarity=0.220  Sum_probs=71.2

Q ss_pred             CCCChHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          131 NNHGNNSTDLYYQKMIQA----D--PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLel----d--P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      +.||.+.|..+|+++-+.    +  .++..++.+.+ +++...++|..|...|.+.+..||.++.+..+.|- +....|+
T Consensus       224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a-~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL-cllYlg~  301 (366)
T KOG2796|consen  224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA-FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL-CLLYLGK  301 (366)
T ss_pred             hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh-hheecccchHHHHHHHhhccccCCCchhhhchHHH-HHHHHHH
Confidence            346888899998854433    2  34456677777 66667889999999999999999999999888884 4445899


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      ..+|++.++++++..|..
T Consensus       302 l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  302 LKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHhccCCcc
Confidence            999999999999998864

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.68  E-value=0.0036  Score=59.12  Aligned_cols=96  Identities=11%  Similarity=0.018  Sum_probs=73.7

Q ss_pred             CCCCccccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCC--CH
Q 027439          121 GDGRWGSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILM----SPN--DG  188 (223)
Q Consensus       121 ~~~~gg~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l----dP~--d~  188 (223)
                      .+|.-|..|.-.|||++|+..-+.-+++....      -.++.|+|+++.. +++|+.|+++|.+++.+    ...  .+
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-lg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-LGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-hcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            35556777888899999999988877764332      3568899977775 89999999999987554    332  34


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      ...+.+|+.++. ..++++|++|+++-|++
T Consensus       276 QscYSLgNtytl-l~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  276 QSCYSLGNTYTL-LKEVQKAITYHQRHLAI  304 (639)
T ss_pred             HHHHHhhhHHHH-HHHHHHHHHHHHHHHHH
Confidence            456778888888 89999999999997765

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.64  E-value=0.012  Score=59.60  Aligned_cols=88  Identities=13%  Similarity=0.035  Sum_probs=77.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      .++|.+|.+...+.++..|+...+..--|..+. ++|++++|..+++..-...++|...+..+-.++.. .+++++|...
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~   99 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHL   99 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHH
Confidence            368999999999999999999888777774455 78999999988888888889999999888866666 9999999999


Q ss_pred             HHHHHHhCCC
Q 027439          212 FDQAVKAAPD  221 (223)
Q Consensus       212 fekAL~l~Pd  221 (223)
                      |+++++.+|+
T Consensus       100 Ye~~~~~~P~  109 (932)
T KOG2053|consen  100 YERANQKYPS  109 (932)
T ss_pred             HHHHHhhCCc
Confidence            9999999986

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.016  Score=56.58  Aligned_cols=86  Identities=13%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHH---------------------------------HHHHHHHHHhCCHHHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLS---------------------------------NYARFLKEARGDLLKAEEYC  177 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~---------------------------------nlA~~l~~~~gdyeeA~~~~  177 (223)
                      .+++|++|++...+.+...|++..++.                                 .-|++.| +++..++|+..+
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y-rlnk~Dealk~~  102 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY-RLNKLDEALKTL  102 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH-HcccHHHHHHHH
Confidence            467899999999999999888765432                                 2333333 355556666555


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          178 ARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       178 ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +   -.++.+..++...|-++|+ +++|++|++.|+..++.+-+
T Consensus       103 ~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~d  142 (652)
T KOG2376|consen  103 K---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSD  142 (652)
T ss_pred             h---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCc
Confidence            5   3467777788899999999 99999999999999876543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.57  E-value=0.0065  Score=55.56  Aligned_cols=63  Identities=16%  Similarity=0.357  Sum_probs=39.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD  196 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~  196 (223)
                      |+.++|..+|+.|++++|.++.++..+|.+.- +.++.-+|-++|-+|+.++|.+..++.+.+.
T Consensus       130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  130 GKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            55666666666666666666666666664444 3466666666666666666666666555443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.56  E-value=0.0053  Score=56.85  Aligned_cols=62  Identities=15%  Similarity=0.103  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       156 l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      +-..|+-++ ++|.|++|+.+|.+++.++|.|+..+.+.|.+|++ .++|..|...++.|+.++
T Consensus       100 iKE~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd  161 (536)
T KOG4648|consen  100 IKERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALD  161 (536)
T ss_pred             HHHhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhh
Confidence            346676666 58999999999999999999999999999988887 999999999999998876

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.51  E-value=0.016  Score=54.03  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=72.5

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      ...++.++|.+..+++++..-+.- ....++ .+  +-+++.+-++..++.++..|+++..+..+|.++++ ++.+.+|.
T Consensus       274 i~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~-~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA~  348 (400)
T COG3071         274 IRLGDHDEAQEIIEDALKRQWDPR-LCRLIP-RL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKAS  348 (400)
T ss_pred             HHcCChHHHHHHHHHHHHhccChh-HHHHHh-hc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHHH
Confidence            345789999999999998765544 222233 22  35899999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHhCCCC
Q 027439          210 SYFDQAVKAAPDD  222 (223)
Q Consensus       210 ~~fekAL~l~Pdn  222 (223)
                      .+|+.|+...|+.
T Consensus       349 ~~leaAl~~~~s~  361 (400)
T COG3071         349 EALEAALKLRPSA  361 (400)
T ss_pred             HHHHHHHhcCCCh
Confidence            9999999987763

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.49  E-value=0.006  Score=35.62  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +++.+|.++.. .|++++|+.+|+++++..|+
T Consensus         2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence            34455544444 55555555555555555554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.012  Score=54.43  Aligned_cols=85  Identities=15%  Similarity=0.104  Sum_probs=67.0

Q ss_pred             ccCCCChHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          129 DPNNHGNNSTDLYYQKMIQA-DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLel-dP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      |+.+|+...-...+++.+-. +|+-   ..+...|+ |.....|-|++|++..++|+++||.|..+....+-++-. +++
T Consensus       147 ~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya-FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~r  224 (491)
T KOG2610|consen  147 HFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA-FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-NGR  224 (491)
T ss_pred             HHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHH-hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cch
Confidence            34456666677777777765 5555   56677777 544458999999999999999999999999999977776 999


Q ss_pred             HHHHHHHHHHH
Q 027439          205 ASRAESYFDQA  215 (223)
Q Consensus       205 ~eeAi~~fekA  215 (223)
                      +.++.+++++-
T Consensus       225 ~Keg~eFM~~t  235 (491)
T KOG2610|consen  225 HKEGKEFMYKT  235 (491)
T ss_pred             hhhHHHHHHhc
Confidence            99999888764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.48  E-value=0.016  Score=51.43  Aligned_cols=65  Identities=29%  Similarity=0.313  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          156 LSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       156 l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .++.|.-++ ..++|..|+..|..-+...|+.   +++++.||.++|. +|++++|...|.++++..|+.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s  211 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKS  211 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCC
Confidence            445564555 3799999999999999999986   5889999999999 999999999999999988764

>PLN03077 Protein ECB2; Provisional

Probab=96.48  E-value=0.016  Score=58.65  Aligned_cols=80  Identities=10%  Similarity=0.045  Sum_probs=36.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      |++++|.++++++ ...|+ +.+|..+-..+. ..++.+.|+...+++++++|++...+..+++++.. .|++++|.+..
T Consensus       639 G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~-~g~~~~a~~vr  714 (857)
T PLN03077        639 GKLTEAYNFINKM-PITPD-PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD-AGKWDEVARVR  714 (857)
T ss_pred             CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-CCChHHHHHHH
Confidence            3444444444433 12232 333333333333 23444555555555555555555555555554444 55555555555


Q ss_pred             HHHH
Q 027439          213 DQAV  216 (223)
Q Consensus       213 ekAL  216 (223)
                      +..-
T Consensus       715 ~~M~  718 (857)
T PLN03077        715 KTMR  718 (857)
T ss_pred             HHHH
Confidence            4443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.46  E-value=0.0086  Score=57.96  Aligned_cols=89  Identities=22%  Similarity=0.134  Sum_probs=77.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA--RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~--~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      .....|+..|.+++..-|....++.++|.++..+  .++.-.|+.-|..|+++||-...+++.++.+++. .+++.+|+.
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~  466 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALS  466 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhh
Confidence            3566799999999999999999999999776643  2677889999999999999999999999999998 999999998


Q ss_pred             HHHHHHHhCCCC
Q 027439          211 YFDQAVKAAPDD  222 (223)
Q Consensus       211 ~fekAL~l~Pdn  222 (223)
                      .-..+...+|.|
T Consensus       467 ~~~alq~~~Ptd  478 (758)
T KOG1310|consen  467 CHWALQMSFPTD  478 (758)
T ss_pred             hHHHHhhcCchh
Confidence            887777777743

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.38  E-value=0.054  Score=49.08  Aligned_cols=82  Identities=12%  Similarity=0.108  Sum_probs=50.6

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          140 LYYQKMIQADPRNPLLLSNYARFLKEARG-----------DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       140 ~~y~~aLeldP~n~~~l~nlA~~l~~~~g-----------dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      .-|++.++.+|.|..+|..+..+--....           -.+..+.+|++|++.+|++..++..|-.++.+ .-+.++.
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l   84 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKL   84 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHH
Confidence            45666677777777777777644321110           13455666777777777777666666655555 5566666


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      ...+++++..+|++
T Consensus        85 ~~~we~~l~~~~~~   98 (321)
T PF08424_consen   85 AKKWEELLFKNPGS   98 (321)
T ss_pred             HHHHHHHHHHCCCC
Confidence            67777777766654

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.36  E-value=0.032  Score=58.41  Aligned_cols=86  Identities=15%  Similarity=0.070  Sum_probs=39.1

Q ss_pred             ccCCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcC
Q 027439          129 DPNNHGNNSTDLYYQKMIQA----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-PNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLel----dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-P~d~~~l~~lA~ll~~~~G  203 (223)
                      |.+.+++++|.+.|+++.+.    .|+ ..+++.+...+. +.|++++|.++|++..+.+ +.+..++..+...+.+ .|
T Consensus       552 ~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~-k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G  628 (1060)
T PLN03218        552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA-NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KG  628 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cC
Confidence            33444555555555555432    233 233333332333 3455555555555555543 2233444444433443 55


Q ss_pred             CHHHHHHHHHHHHH
Q 027439          204 DASRAESYFDQAVK  217 (223)
Q Consensus       204 ~~eeAi~~fekAL~  217 (223)
                      ++++|+..|++..+
T Consensus       629 ~~deAl~lf~eM~~  642 (1060)
T PLN03218        629 DWDFALSIYDDMKK  642 (1060)
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555554443

>PRK10941 hypothetical protein; Provisional

Probab=96.36  E-value=0.018  Score=51.31  Aligned_cols=56  Identities=18%  Similarity=0.109  Sum_probs=38.1

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.+++++|..+.++.+.++|+++.-+...|.++.+ .+.+..|+.-++.-++.-|++
T Consensus       193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCc
Confidence            46677777777777777777777666667755444 777777777777777666653

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.31  E-value=0.0073  Score=55.25  Aligned_cols=56  Identities=21%  Similarity=0.383  Sum_probs=51.4

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.|+.++|..+|+.|+.+.|++++++..+|.+.-. .++.-+|-.+|-|||.++|.|
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~n  183 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGN  183 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCc
Confidence            47999999999999999999999999999966555 889999999999999999976

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.04  Score=49.33  Aligned_cols=86  Identities=19%  Similarity=0.190  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA-ESYF  212 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA-i~~f  212 (223)
                      .+..|.-+|++.-+..|-++..++..|.+.. .+++|++|+..++.|+.-++++++++.++-.+... .|...++ .+++
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERNL  265 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHHH
Confidence            4677777777777777777777777774444 57888888888888888888888888888766555 5544433 3344


Q ss_pred             HHHHHhCCC
Q 027439          213 DQAVKAAPD  221 (223)
Q Consensus       213 ekAL~l~Pd  221 (223)
                      .+.....|+
T Consensus       266 ~QLk~~~p~  274 (299)
T KOG3081|consen  266 SQLKLSHPE  274 (299)
T ss_pred             HHHHhcCCc
Confidence            444444444

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.27  E-value=0.06  Score=40.13  Aligned_cols=76  Identities=13%  Similarity=0.001  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439          138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND--GNVLSMYGDLIWQSHKDASRAESYFDQA  215 (223)
Q Consensus       138 A~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d--~~~l~~lA~ll~~~~G~~eeAi~~fekA  215 (223)
                      .+..+++.++.+|+|..+...+|..+. ..|++++|++.+-.++..++++  ..+...+-.++-. .|.-+.-...|++-
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~plv~~~RRk   84 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGDPLVSEYRRK   84 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCChHHHHHHHH
Confidence            467789999999999999999997666 5899999999999999998765  5565555544444 67644444444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.26  E-value=0.01  Score=51.38  Aligned_cols=67  Identities=16%  Similarity=0.020  Sum_probs=58.4

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      .+.+.++.|+.-+.++|+++|.+..++.++| .+|.....|++|++-|.+.++.+|..-.+.-..+.+
T Consensus       145 iKl~k~e~aI~dcsKaiel~pty~kAl~RRA-eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  145 IKLRKWESAIEDCSKAIELNPTYEKALERRA-EAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHhhhHHHHHHHHHhhHhcCchhHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            3457899999999999999999999999999 566678999999999999999999988777665554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.014  Score=54.36  Aligned_cols=83  Identities=12%  Similarity=-0.038  Sum_probs=66.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~-~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      .+.||..|+.+++-....+.... .+-..+|.+++ ++|+|++|...|+-+..-+.-+..++.++|-+++- +|.|.+|.
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~  111 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAK  111 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHH
Confidence            45799999999998887665443 44455664444 69999999999999999877788999999966666 99999999


Q ss_pred             HHHHHH
Q 027439          210 SYFDQA  215 (223)
Q Consensus       210 ~~fekA  215 (223)
                      ..-.+|
T Consensus       112 ~~~~ka  117 (557)
T KOG3785|consen  112 SIAEKA  117 (557)
T ss_pred             HHHhhC
Confidence            887765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.22  E-value=0.0098  Score=36.44  Aligned_cols=25  Identities=40%  Similarity=0.639  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027439          156 LSNYARFLKEARGDLLKAEEYCARAI  181 (223)
Q Consensus       156 l~nlA~~l~~~~gdyeeA~~~~ekAL  181 (223)
                      +.++|.++. ..|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYR-QQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence            344443333 3455555555555533

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.17  E-value=0.017  Score=57.05  Aligned_cols=86  Identities=8%  Similarity=-0.058  Sum_probs=50.7

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCC
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l--dP~d~~~l~~lA~ll~~~~G~  204 (223)
                      +.|.+.|++++|.+.|+++   .+.|..+|+.+...+. +.|++++|+++|++....  .| |...+..+..++.. .|+
T Consensus       267 ~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~-~g~  340 (697)
T PLN03081        267 DMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSR-LAL  340 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-ccc
Confidence            3456667777777777654   3345666666664444 467777777777766553  23 33344444444444 666


Q ss_pred             HHHHHHHHHHHHHh
Q 027439          205 ASRAESYFDQAVKA  218 (223)
Q Consensus       205 ~eeAi~~fekAL~l  218 (223)
                      +++|...++.+++.
T Consensus       341 ~~~a~~i~~~m~~~  354 (697)
T PLN03081        341 LEHAKQAHAGLIRT  354 (697)
T ss_pred             hHHHHHHHHHHHHh
Confidence            66666666665554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.17  E-value=0.04  Score=52.63  Aligned_cols=85  Identities=20%  Similarity=0.157  Sum_probs=70.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~----~~l~~lA~ll~~~~G~~eeA  208 (223)
                      .+.+.|.+++++..+..|+.+..+...|+.+. .+++.++|++.+++++.....-+    -.++-+++.+.. +.++++|
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence            47899999999999999999999999997777 58999999999999996544333    235566766666 8999999


Q ss_pred             HHHHHHHHHhC
Q 027439          209 ESYFDQAVKAA  219 (223)
Q Consensus       209 i~~fekAL~l~  219 (223)
                      ..+|.+.++.+
T Consensus       325 ~~~f~~L~~~s  335 (468)
T PF10300_consen  325 AEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHhcc
Confidence            99999998754

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.17  E-value=0.022  Score=54.75  Aligned_cols=92  Identities=18%  Similarity=0.289  Sum_probs=79.8

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      +-++++++..|...|++|+..+-.|..+|..|+.+-. +++....|...+.+|+.+=|.-...|+.|..+ -..+|+..-
T Consensus        82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ym-EE~LgNi~g  159 (677)
T KOG1915|consen   82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYM-EEMLGNIAG  159 (677)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH-HHHhcccHH
Confidence            4456789999999999999999999999999996655 57899999999999999999988889888844 444899999


Q ss_pred             HHHHHHHHHHhCCC
Q 027439          208 AESYFDQAVKAAPD  221 (223)
Q Consensus       208 Ai~~fekAL~l~Pd  221 (223)
                      |...|++=+...|+
T Consensus       160 aRqiferW~~w~P~  173 (677)
T KOG1915|consen  160 ARQIFERWMEWEPD  173 (677)
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999998887775

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.17  E-value=0.025  Score=54.32  Aligned_cols=88  Identities=19%  Similarity=0.261  Sum_probs=72.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHcCCHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN--VLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~--~l~~lA~ll~~~~G~~eeA  208 (223)
                      +.++++...++|++-|+..|.|-.+|..+|. +-..+|+.+.|..+|+-|+....-+..  +|..|-++-.. .+.+++|
T Consensus       449 qL~efDRcRkLYEkfle~~Pe~c~~W~kyaE-lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~-~~E~eka  526 (677)
T KOG1915|consen  449 QLREFDRCRKLYEKFLEFSPENCYAWSKYAE-LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE-EGEFEKA  526 (677)
T ss_pred             HHhhHHHHHHHHHHHHhcChHhhHHHHHHHH-HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh-cchHHHH
Confidence            3578999999999999999999999999994 444689999999999999997544432  34444444556 8999999


Q ss_pred             HHHHHHHHHhCC
Q 027439          209 ESYFDQAVKAAP  220 (223)
Q Consensus       209 i~~fekAL~l~P  220 (223)
                      ..+|++.|+..+
T Consensus       527 R~LYerlL~rt~  538 (677)
T KOG1915|consen  527 RALYERLLDRTQ  538 (677)
T ss_pred             HHHHHHHHHhcc
Confidence            999999998765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.17  E-value=0.023  Score=54.57  Aligned_cols=85  Identities=14%  Similarity=0.096  Sum_probs=65.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------------------C----
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---------------------D----  187 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~---------------------d----  187 (223)
                      .+..+.+++-++|++++|+.+.+|.-+|.   +......+|+++|+||++....                     +    
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            57888999999999999999999877773   1123567888888887774210                     1    


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       188 ~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      ..+...+|.++++ .|+.++|++.|+..++.+|.
T Consensus       259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~  291 (539)
T PF04184_consen  259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPN  291 (539)
T ss_pred             hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCc
Confidence            3345667877777 99999999999999988875

The molecular function of this protein is uncertain.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.15  E-value=0.0095  Score=32.62  Aligned_cols=31  Identities=32%  Similarity=0.402  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 027439          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPN  186 (223)
Q Consensus       155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~  186 (223)
                      ++.++|.++. ..+++++|+.+++++++++|+
T Consensus         3 ~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYL-KLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence            3445553333 345555555555555555553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.15  E-value=0.053  Score=56.77  Aligned_cols=91  Identities=10%  Similarity=0.004  Sum_probs=68.2

Q ss_pred             ccccccCCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQA--DPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL----MSPNDGNVLSMYGDLI  198 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLel--dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~----ldP~d~~~l~~lA~ll  198 (223)
                      --+.|.+.+++++|..+|+++.+.  .|+ ..+|+.+...+. +.+++++|.+++++...    +.|+ ..++..+...+
T Consensus       513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~-k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay  589 (1060)
T PLN03218        513 LIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACG-QSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC  589 (1060)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence            345566778999999999998765  354 666777775666 57999999999998876    3454 55666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC
Q 027439          199 WQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       199 ~~~~G~~eeAi~~fekAL~l~  219 (223)
                      .+ .|++++|++.|+++.+.+
T Consensus       590 ~k-~G~ldeA~elf~~M~e~g  609 (1060)
T PLN03218        590 AN-AGQVDRAKEVYQMIHEYN  609 (1060)
T ss_pred             HH-CCCHHHHHHHHHHHHHcC
Confidence            66 899999999999888764

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.15  E-value=0.041  Score=51.26  Aligned_cols=93  Identities=14%  Similarity=0.134  Sum_probs=72.9

Q ss_pred             ccCCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH---hCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHH--
Q 027439          129 DPNNHGNNSTDLYYQKMIQA----DPRNPLLLSNYARFLKEA---RGDLLKAEEYCAR-AILMSPNDGNVLSMYGDLI--  198 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLel----dP~n~~~l~nlA~~l~~~---~gdyeeA~~~~ek-AL~ldP~d~~~l~~lA~ll--  198 (223)
                      |...+||+.-+.+.+.+-.+    -++...+...||-++. +   .|+.++|+..+.. .....+.+++++..+|.++  
T Consensus       151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD  229 (374)
T ss_pred             hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            44567999999999887777    5667778888885565 5   6899999999999 5556678999999999873  


Q ss_pred             -HHH-----cCCHHHHHHHHHHHHHhCCCC
Q 027439          199 -WQS-----HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       199 -~~~-----~G~~eeAi~~fekAL~l~Pdn  222 (223)
                       |..     ....++|+.+|.|+.+++|+-
T Consensus       230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  230 LFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence             332     224779999999999999764

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.13  E-value=0.024  Score=46.12  Aligned_cols=57  Identities=23%  Similarity=0.271  Sum_probs=51.2

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          162 FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       162 ~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      .+.+ -++.+.|++.|.+++.+-|..+.++.+.|..+.. +|+.++|++-+++|+++.-
T Consensus        52 alaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag  108 (175)
T KOG4555|consen   52 ALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAG  108 (175)
T ss_pred             HHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcC
Confidence            3443 6999999999999999999999999999988777 9999999999999998853

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.13  E-value=0.01  Score=52.03  Aligned_cols=92  Identities=15%  Similarity=0.151  Sum_probs=69.7

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      +-..++|+.|.+.|+-.+++||.+-.++.|+|..+|. -|+|+-|.+-+.+....||+||.-- .+- .+....-+..+|
T Consensus       109 l~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LAq~d~~~fYQ~D~~DPfR~-LWL-Yl~E~k~dP~~A  185 (297)
T COG4785         109 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLAQDDLLAFYQDDPNDPFRS-LWL-YLNEQKLDPKQA  185 (297)
T ss_pred             HHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhhHHHHHHHHhcCCCChHHH-HHH-HHHHhhCCHHHH
Confidence            3445899999999999999999999999999988875 6999999999999999999998321 111 123335677788


Q ss_pred             HHHHH-HHHHhCCCCC
Q 027439          209 ESYFD-QAVKAAPDDW  223 (223)
Q Consensus       209 i~~fe-kAL~l~Pdn~  223 (223)
                      ...+. ++...+.+.|
T Consensus       186 ~tnL~qR~~~~d~e~W  201 (297)
T COG4785         186 KTNLKQRAEKSDKEQW  201 (297)
T ss_pred             HHHHHHHHHhccHhhh
Confidence            76654 4544454444

>PLN03077 Protein ECB2; Provisional

Probab=96.13  E-value=0.035  Score=56.20  Aligned_cols=86  Identities=15%  Similarity=0.152  Sum_probs=38.3

Q ss_pred             CChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADP--RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP--~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      |++++|..+|+++.+..+  -+...+..+...+. +.|++++|++++++. .+.| |..+|..+-..+.. .++.+.|..
T Consensus       603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~-~~~~e~~e~  678 (857)
T PLN03077        603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITP-DPAVWGALLNACRI-HRHVELGEL  678 (857)
T ss_pred             ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-cCChHHHHH
Confidence            344444444444442211  11233444443222 345555555555443 2334 23344444434433 555555555


Q ss_pred             HHHHHHHhCCCC
Q 027439          211 YFDQAVKAAPDD  222 (223)
Q Consensus       211 ~fekAL~l~Pdn  222 (223)
                      ..+++++++|++
T Consensus       679 ~a~~l~~l~p~~  690 (857)
T PLN03077        679 AAQHIFELDPNS  690 (857)
T ss_pred             HHHHHHhhCCCC
Confidence            555556666654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.13  E-value=0.018  Score=42.92  Aligned_cols=48  Identities=17%  Similarity=0.124  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          173 AEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       173 A~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      .+..++++++.+|+|..+.+.+|..+.. .|++++|++.+..+++.+++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcc
Confidence            4567899999999999999999988887 99999999999999988765

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.12  E-value=0.031  Score=37.82  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      .++.+|..++ +.++|++|..+++++++++|+|..+.....
T Consensus         3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            3456665555 689999999999999999999998876555

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.05  E-value=0.044  Score=46.89  Aligned_cols=87  Identities=13%  Similarity=0.124  Sum_probs=66.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      .+++++|+..++.++...-+.   ..+-.++|+++.. ++.+++|...+.....-+- .+.+....|+++.. .|+-++|
T Consensus       102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~-kg~k~~A  178 (207)
T COG2976         102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKEESW-AAIVAELRGDILLA-KGDKQEA  178 (207)
T ss_pred             hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhccccccH-HHHHHHHhhhHHHH-cCchHHH
Confidence            478999999999988653332   3556788887775 8999999988876554221 23445678888888 9999999


Q ss_pred             HHHHHHHHHhCCC
Q 027439          209 ESYFDQAVKAAPD  221 (223)
Q Consensus       209 i~~fekAL~l~Pd  221 (223)
                      +..|+++++.+++
T Consensus       179 r~ay~kAl~~~~s  191 (207)
T COG2976         179 RAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHHHccCC
Confidence            9999999998654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.00  E-value=0.038  Score=55.69  Aligned_cols=90  Identities=11%  Similarity=0.055  Sum_probs=68.5

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNP-----LLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYG  195 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~-----~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~lA  195 (223)
                      ..+...+++++|..+++++++..+...     .++..++.++. ..|++++|..++++++......      ..++..++
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la  538 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS  538 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence            344567899999999999998655432     34566775555 5899999999999999764321      23456677


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 027439          196 DLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       196 ~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .+++. .|++++|..+++++++.
T Consensus       539 ~~~~~-~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        539 EILFA-QGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHH
Confidence            77777 99999999999999875

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.99  E-value=0.028  Score=53.69  Aligned_cols=93  Identities=15%  Similarity=0.086  Sum_probs=69.1

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~----n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      -|+.+...++.++|++.|++++.....    ....+..++.++. .+.+|++|..++.+.++.+.-..-.+..++.+++.
T Consensus       273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~  351 (468)
T PF10300_consen  273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL  351 (468)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            356666679999999999998853332    2455678885444 58999999999999999876655555555555666


Q ss_pred             HcCCH-------HHHHHHHHHHHHh
Q 027439          201 SHKDA-------SRAESYFDQAVKA  218 (223)
Q Consensus       201 ~~G~~-------eeAi~~fekAL~l  218 (223)
                      ..++.       ++|..+|.++-.+
T Consensus       352 ~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  352 MLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhccchhhhhhHHHHHHHHHHHHHH
Confidence            58888       8888888887554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.98  E-value=0.09  Score=45.23  Aligned_cols=85  Identities=13%  Similarity=0.090  Sum_probs=71.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL-MSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~-ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      |.+.+..-..+.++..|.+.. ...+|..+.+ .|++.+|+.+|++++. +..+|+..+..++...+. .+++..|...+
T Consensus        71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~e-lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tL  147 (251)
T COG4700          71 DPERHLREATEELAIAPTVQN-RYRLANALAE-LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTL  147 (251)
T ss_pred             ChhHHHHHHHHHHhhchhHHH-HHHHHHHHHH-hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHH
Confidence            566666667777777787665 4588877875 8999999999999987 567899999999999999 99999999999


Q ss_pred             HHHHHhCCC
Q 027439          213 DQAVKAAPD  221 (223)
Q Consensus       213 ekAL~l~Pd  221 (223)
                      ++..+.+|.
T Consensus       148 e~l~e~~pa  156 (251)
T COG4700         148 EDLMEYNPA  156 (251)
T ss_pred             HHHhhcCCc
Confidence            999988775

>PRK10941 hypothetical protein; Provisional

Probab=95.98  E-value=0.065  Score=47.78  Aligned_cols=66  Identities=11%  Similarity=0.027  Sum_probs=58.3

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD  196 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~  196 (223)
                      ...++++.|..+.+.++.++|+++.-+..+| .++.+++.+..|..-++..++..|+++.+......
T Consensus       192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRG-ll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        192 MEEKQMELALRASEALLQFDPEDPYEIRDRG-LIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            3458999999999999999999999999999 55557999999999999999999999988765543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.92  E-value=0.041  Score=50.31  Aligned_cols=83  Identities=10%  Similarity=-0.054  Sum_probs=73.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      ...+|+.|++++.--.+.+|.+-..+..+|.++| +..+|..|..+|++.-.+.|........+|..+|. .+.+..|+.
T Consensus        22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALr   99 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALR   99 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHH
Confidence            3468999999999999999999999999997777 57999999999999999999999888888888888 899999887


Q ss_pred             HHHHH
Q 027439          211 YFDQA  215 (223)
Q Consensus       211 ~fekA  215 (223)
                      .....
T Consensus       100 V~~~~  104 (459)
T KOG4340|consen  100 VAFLL  104 (459)
T ss_pred             HHHHh
Confidence            66554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.91  E-value=0.015  Score=51.14  Aligned_cols=57  Identities=12%  Similarity=0.174  Sum_probs=52.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG  188 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~  188 (223)
                      ..+|.+.|.++|.+++++-|.....|..+| .+.++-++++.|.+.|++.++++|.|.
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g-~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLG-EYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcc-hhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            457899999999999999999999999999 677788999999999999999999875

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.89  E-value=0.13  Score=44.26  Aligned_cols=85  Identities=19%  Similarity=0.230  Sum_probs=62.0

Q ss_pred             CCChHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHhCCC------CHHHH
Q 027439          132 NHGNNSTDLYYQKMIQA----DPRN---PLLLSNYARFLKEARGD-------LLKAEEYCARAILMSPN------DGNVL  191 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLel----dP~n---~~~l~nlA~~l~~~~gd-------yeeA~~~~ekAL~ldP~------d~~~l  191 (223)
                      ..++++|++.|.-|+-.    ...+   +.++..+| +++..+++       +.+|.+.|++|++....      ...++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlA-WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLA-WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            34789999988888742    2222   56677888 55544566       46778888888775432      25778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          192 SMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       192 ~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +.+|.+.++ .|++++|+.+|.+++..
T Consensus       169 YLigeL~rr-lg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  169 YLIGELNRR-LGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHH-hCCHHHHHHHHHHHHcC
Confidence            889988777 99999999999999865

>smart00028 TPR Tetratricopeptide repeats

Probab=95.88  E-value=0.017  Score=31.56  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .++..+|.+++. .+++++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCC
Confidence            467788877777 999999999999999998864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.86  E-value=0.039  Score=51.46  Aligned_cols=87  Identities=20%  Similarity=0.168  Sum_probs=62.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC-HHHHHHHHH-----------HHHHhCCCCHHHHHHHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD-LLKAEEYCA-----------RAILMSPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gd-yeeA~~~~e-----------kAL~ldP~d~~~l~~lA~ll~~~  201 (223)
                      ..++|+..|+++++++|+. ..-.|+|..+.. .|. ++...++-+           +-..-.-.+.+.+..++.+... 
T Consensus       241 ~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~-~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL-  317 (374)
T PF13281_consen  241 SLDKAIEWYRKGFEIEPDY-YSGINAATLLML-AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL-  317 (374)
T ss_pred             HHHHHHHHHHHHHcCCccc-cchHHHHHHHHH-cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-
Confidence            4899999999999999654 445688855553 453 332222111           1122234567777888888888 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCC
Q 027439          202 HKDASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pdn~  223 (223)
                      .+++++|++++++++++.|..|
T Consensus       318 ~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  318 AGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             cCCHHHHHHHHHHHhhcCCcch
Confidence            9999999999999999999988

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.70  E-value=0.027  Score=32.73  Aligned_cols=32  Identities=34%  Similarity=0.350  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 027439          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPND  187 (223)
Q Consensus       155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d  187 (223)
                      ++.++|.++. ..+++++|+..|++++...|+.
T Consensus         2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHH-HccCHHHHHHHHHHHHHHCcCC
Confidence            5678996666 5899999999999999999974

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.68  E-value=0.023  Score=34.75  Aligned_cols=28  Identities=29%  Similarity=0.461  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      ++..+|.++.. .|++++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQ-QGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            46788988777 99999999999996644

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.67  E-value=0.014  Score=53.46  Aligned_cols=81  Identities=9%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       141 ~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      .|.++-..-|+++.+|..++.+.. +.+.|.+--..|-+++...|.|.++|..-+..-+...++++.|+..|++++..+|
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            344555556777777777774333 4567777777777777777777777765444433336777777777777777766


Q ss_pred             CC
Q 027439          221 DD  222 (223)
Q Consensus       221 dn  222 (223)
                      ++
T Consensus       174 ~~  175 (435)
T COG5191         174 RS  175 (435)
T ss_pred             CC
Confidence            53

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.60  E-value=0.034  Score=43.75  Aligned_cols=52  Identities=17%  Similarity=0.078  Sum_probs=43.3

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL  182 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~  182 (223)
                      ...+++++|+..+++++..+|.+-.++..+-.++. ..|++.+|++.|++...
T Consensus        73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence            34689999999999999999999999999987777 58999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.57  E-value=0.017  Score=50.90  Aligned_cols=56  Identities=18%  Similarity=0.278  Sum_probs=51.4

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ..+|.+.|.+.|.+|+++-|.....|+.++...-+ .|+++.|.+.|++.++++|+|
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCccc
Confidence            36899999999999999999999999999965555 999999999999999999986

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.53  E-value=0.07  Score=53.76  Aligned_cols=88  Identities=17%  Similarity=0.143  Sum_probs=59.8

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------CHHHHHHH
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--------DGNVLSMY  194 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~--------d~~~l~~l  194 (223)
                      +...|++++|..+++++++.....      ..++.++|..++ ..|++++|..++++++.+-..        ...++..+
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  579 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR  579 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            445678888888888888653321      234566775555 478888888888888775211        12334456


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          195 GDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       195 A~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +.+++. .|++++|...+++++..
T Consensus       580 a~~~~~-~G~~~~A~~~~~~al~~  602 (903)
T PRK04841        580 AQLLWE-WARLDEAEQCARKGLEV  602 (903)
T ss_pred             HHHHHH-hcCHHHHHHHHHHhHHh
Confidence            766777 78888888888888765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.52  E-value=0.15  Score=49.18  Aligned_cols=90  Identities=14%  Similarity=0.080  Sum_probs=67.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC---
Q 027439          131 NNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPNDGNVLSMYGDLIWQSHKD---  204 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~--n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-dP~d~~~l~~lA~ll~~~~G~---  204 (223)
                      +.|+.++|++.|+.+++.+|.  +..++.++..++.+ .++|.++...+.|--.+ -|+.+.+.++-|-+.++..++   
T Consensus       271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs  349 (539)
T PF04184_consen  271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFS  349 (539)
T ss_pred             HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccC
Confidence            458999999999999998875  56789999988886 79999999998885433 256666666666443332332   


Q ss_pred             ------------HHHHHHHHHHHHHhCCC
Q 027439          205 ------------ASRAESYFDQAVKAAPD  221 (223)
Q Consensus       205 ------------~eeAi~~fekAL~l~Pd  221 (223)
                                  ...|++++.||++.||.
T Consensus       350 ~e~a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  350 PEAASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             chhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence                        13578999999999984

The molecular function of this protein is uncertain.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.51  E-value=0.12  Score=49.85  Aligned_cols=67  Identities=16%  Similarity=0.221  Sum_probs=59.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW  199 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~  199 (223)
                      +.+.+--..|.+++..+|+++.+|..-|.+.++.+-+.+.|..++.+++..+|+.+.+|.-|-.+..
T Consensus       119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL  185 (568)
T KOG2396|consen  119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMEL  185 (568)
T ss_pred             cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence            4578888999999999999999999999999987667999999999999999999999877766533

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.48  E-value=0.1  Score=51.03  Aligned_cols=84  Identities=12%  Similarity=0.029  Sum_probs=64.9

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------------------
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-------------------------  184 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-------------------------  184 (223)
                      .+.+..++|+.+++   -.++.+..+..-.|.++| ++++|++|...|+..++.+                         
T Consensus        90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q  165 (652)
T KOG2376|consen   90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ  165 (652)
T ss_pred             HHcccHHHHHHHHh---cccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence            45677888998888   566777777788898888 6999999999999775432                         


Q ss_pred             -----CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          185 -----PN-DGNVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       185 -----P~-d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                           |. ..+.+++.|-++.. .|+|.+|++.+++|+.+
T Consensus       166 ~v~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  166 SVPEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRI  204 (652)
T ss_pred             hccCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH
Confidence                 22 44567777755666 99999999999999543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.43  E-value=0.041  Score=37.22  Aligned_cols=32  Identities=19%  Similarity=0.289  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .++.+|..+++ .|+|++|+.+.+++|+++|+|
T Consensus         3 ~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    3 CLYYLAIGHYK-LGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-
T ss_pred             hHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCc
Confidence            45677877888 999999999999999999987

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.43  E-value=0.035  Score=51.80  Aligned_cols=94  Identities=14%  Similarity=0.002  Sum_probs=71.4

Q ss_pred             CCccccccCCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----C-----
Q 027439          123 GRWGSWDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSPN----D-----  187 (223)
Q Consensus       123 ~~gg~~Y~~~gd~~eA~~~y~~aLeldP~n~------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~----d-----  187 (223)
                      +-.++.+...+.|+++++.|+.|++...++.      .++..++. +|-+.+|+++|..+..+|.++-..    |     
T Consensus       126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs-lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky  204 (518)
T KOG1941|consen  126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS-LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY  204 (518)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH-HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence            3355556667889999999999998755443      46778884 555689999999999999887432    2     


Q ss_pred             -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          188 -GNVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       188 -~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                       ..+++.++..+.+ +|+.-.|.++.+.|.++
T Consensus       205 r~~~lyhmaValR~-~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  205 RAMSLYHMAVALRL-LGRLGDAMECCEEAMKL  235 (518)
T ss_pred             HHHHHHHHHHHHHH-hcccccHHHHHHHHHHH
Confidence             2456777855555 99999999999998765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.42  E-value=0.057  Score=53.45  Aligned_cols=90  Identities=24%  Similarity=0.336  Sum_probs=72.7

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHc--CCH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSH--KDA  205 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--P~d~~~l~~lA~ll~~~~--G~~  205 (223)
                      +..|-++...+.|++++++-=..+.+..|||.+|-. ..-|++|.+.|+|.|.+.  |+-.++|..|-..+..+.  ...
T Consensus       488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl  566 (835)
T KOG2047|consen  488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL  566 (835)
T ss_pred             HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence            344788889999999999999999999999966664 677899999999999987  556677776665544433  378


Q ss_pred             HHHHHHHHHHHHhCC
Q 027439          206 SRAESYFDQAVKAAP  220 (223)
Q Consensus       206 eeAi~~fekAL~l~P  220 (223)
                      ++|..+|+|||+.-|
T Consensus       567 EraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  567 ERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999998655

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.35  E-value=0.086  Score=46.60  Aligned_cols=93  Identities=12%  Similarity=0.021  Sum_probs=57.0

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-H-----HH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLL------LSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-V-----LS  192 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~------l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~-~-----l~  192 (223)
                      .+.+|.+. +..+|+.++++++++..+-..+      +..+|.++-..+.++++|+.+|++|-+....+-. .     +.
T Consensus        80 A~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l  158 (288)
T KOG1586|consen   80 AANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL  158 (288)
T ss_pred             HHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence            34444443 7788888888888876554433      3356644433346888899999888776543321 1     22


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      ..|. +-...++|.+|+..|+++....
T Consensus       159 KvA~-yaa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  159 KVAQ-YAAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            2222 2223778888998888876553

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=0.15  Score=45.78  Aligned_cols=90  Identities=18%  Similarity=0.153  Sum_probs=73.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS-RAES  210 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e-eAi~  210 (223)
                      ++.-..|.++-+.+|.++|.|-.+|..+=.++.....+..+-++++.+.++-+|.|..+|...-.+.-. .|++. +-++
T Consensus        56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~rELe  134 (318)
T KOG0530|consen   56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFRELE  134 (318)
T ss_pred             cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccchHH
Confidence            445678888899999999999999877776777666788888999999999999999999887755544 88888 8888


Q ss_pred             HHHHHHHhCCCC
Q 027439          211 YFDQAVKAAPDD  222 (223)
Q Consensus       211 ~fekAL~l~Pdn  222 (223)
                      ..++++..+..|
T Consensus       135 f~~~~l~~DaKN  146 (318)
T KOG0530|consen  135 FTKLMLDDDAKN  146 (318)
T ss_pred             HHHHHHhccccc
Confidence            888888766554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.24  E-value=0.083  Score=50.18  Aligned_cols=92  Identities=10%  Similarity=0.033  Sum_probs=71.0

Q ss_pred             ccccccCCCChHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQA----DPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMS------PNDGNVLS  192 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLel----dP~--n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld------P~d~~~l~  192 (223)
                      -|.+|.-.++|+.|+++|++++.+    ...  .+...+.+|+.|+. ..+|++|+.|.++-+.+-      -....+.+
T Consensus       241 lgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw  319 (639)
T KOG1130|consen  241 LGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACW  319 (639)
T ss_pred             cchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            556777789999999999998754    222  24556788887885 789999999998866542      23456777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .+|..+.. .|.+++|+.+.++.+++
T Consensus       320 SLgna~~a-lg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  320 SLGNAFNA-LGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHh-hhhHHHHHHHHHHHHHH
Confidence            88877766 99999999999998876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.11  E-value=0.11  Score=55.33  Aligned_cols=91  Identities=13%  Similarity=0.260  Sum_probs=80.3

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~--n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      .....+.+-++|...+++|++.-|.  +..+....|..-| +.||.+.+..+|+-.+..+|.-.++|..|.+.-.+ +++
T Consensus      1572 ~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik-~~~ 1649 (1710)
T KOG1070|consen 1572 DFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK-HGD 1649 (1710)
T ss_pred             HHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc-cCC
Confidence            3444556678899999999999998  8899989996556 68999999999999999999999999999998888 999


Q ss_pred             HHHHHHHHHHHHHhC
Q 027439          205 ASRAESYFDQAVKAA  219 (223)
Q Consensus       205 ~eeAi~~fekAL~l~  219 (223)
                      .+-++..|+|++.+.
T Consensus      1650 ~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999764

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.08  E-value=0.19  Score=49.23  Aligned_cols=90  Identities=19%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCCH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY------GDLIWQSHKDA  205 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~l------A~ll~~~~G~~  205 (223)
                      .++...+......++..||.+..++.+++..+-.....+.-++..++.+....|++..++...      +...-. .++.
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~  158 (620)
T COG3914          80 LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGRT  158 (620)
T ss_pred             cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hccH
Confidence            456678888899999999999999999997776544566777778888999999999888777      654444 8899


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      .++..++++++...|.+
T Consensus       159 ~~~~~~l~~~~d~~p~~  175 (620)
T COG3914         159 AEAELALERAVDLLPKY  175 (620)
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999999988764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.06  E-value=0.14  Score=45.95  Aligned_cols=88  Identities=18%  Similarity=0.086  Sum_probs=68.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-H--HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLK-E--ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~-~--~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      ...++-|++..+++.+++.+..  +.+||..+- .  -...+.+|..+|+..-+..|..+..+...|.++.. ++++++|
T Consensus       150 ~~r~d~A~~~lk~mq~ided~t--LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeA  226 (299)
T KOG3081|consen  150 MHRFDLAEKELKKMQQIDEDAT--LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEA  226 (299)
T ss_pred             HHHHHHHHHHHHHHHccchHHH--HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHH
Confidence            4677888888888888876643  334443332 1  12468999999999999778899999999977777 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      ...++.||..++++
T Consensus       227 e~lL~eaL~kd~~d  240 (299)
T KOG3081|consen  227 ESLLEEALDKDAKD  240 (299)
T ss_pred             HHHHHHHHhccCCC
Confidence            99999999988764

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.025  Score=49.97  Aligned_cols=59  Identities=15%  Similarity=0.062  Sum_probs=52.3

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          161 RFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       161 ~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +.|+ ...+|..|+.+|.+||.++|..+..+.+-|..+++ ..+++.+..-..+|++++||
T Consensus        18 nk~f-~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N   76 (284)
T KOG4642|consen   18 NKCF-IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPN   76 (284)
T ss_pred             cccc-chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChH
Confidence            3455 36789999999999999999999999999976666 99999999999999999986

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.87  E-value=0.12  Score=44.59  Aligned_cols=62  Identities=24%  Similarity=0.251  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       138 A~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      |+.+|++|+.+.|.+...++++| .+....++.-.|+.+|-|++...-..+.+..++..++-+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLA-vl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLA-VLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHH-HHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchh-hhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78999999999999999999999 555568999999999999998776678888888855443

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.87  E-value=0.13  Score=40.01  Aligned_cols=90  Identities=14%  Similarity=0.084  Sum_probs=66.1

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH---HhCC-------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKE---ARGD-------LLKAEEYCARAILMSPNDGNVLSMY  194 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~---~~l~nlA~~l~~---~~gd-------yeeA~~~~ekAL~ldP~d~~~l~~l  194 (223)
                      -+..+||+-+|+++.+.++...+++.   .++..-|.+++.   +..+       .--++++|.++..+.|+.+..++.+
T Consensus         5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~l   84 (111)
T PF04781_consen    5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFEL   84 (111)
T ss_pred             HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHH
Confidence            35567899999999999999988776   334344433322   1111       2568999999999999998888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          195 GDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       195 A~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      |.-+-- ...|++++...+++|..
T Consensus        85 a~~l~s-~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   85 ASQLGS-VKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHhhh-HHHHHHHHHHHHHHhcc
Confidence            865444 55688888888888865

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.56  E-value=0.27  Score=44.35  Aligned_cols=93  Identities=19%  Similarity=0.210  Sum_probs=66.9

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---H---HHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---V---LSMYGDLIWQ  200 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~---~---l~~lA~ll~~  200 (223)
                      -+|.-.++|..|...|.+.++.||.++.+.++-|.++. ..++..+|++..+.++++.|....   +   +..+..++|.
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll-Ylg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys  338 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL-YLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYS  338 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHH-HHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhh
Confidence            34455679999999999999999999999999996666 489999999999999999997542   2   3344444554


Q ss_pred             HcCCHHHHHHHHHHHH-HhCCCCC
Q 027439          201 SHKDASRAESYFDQAV-KAAPDDW  223 (223)
Q Consensus       201 ~~G~~eeAi~~fekAL-~l~Pdn~  223 (223)
                      ..-+.+.++   ..++ ...|++|
T Consensus       339 ~~~~~k~~l---~~~ia~~~~d~f  359 (366)
T KOG2796|consen  339 RSMQKKQAL---LEAVAGKEGDSF  359 (366)
T ss_pred             hhhhHHHHH---HHHHhccCCCcc
Confidence            333333333   3333 3366665

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.52  E-value=0.27  Score=39.97  Aligned_cols=70  Identities=16%  Similarity=0.155  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHH-hCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          152 NPLLLSNYARFLKE--ARGDLLKAEEYCARAIL-MSPNDG-NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       152 n~~~l~nlA~~l~~--~~gdyeeA~~~~ekAL~-ldP~d~-~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .....++||+++-.  ...+..+.+.+++..++ ..|..- +-++.+|.-+++ .++|++|+.|.+..++.+|+|
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n  104 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNN  104 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCc
Confidence            35667788866642  12466888889999986 555433 456667766787 999999999999999999886

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.48  E-value=0.49  Score=39.17  Aligned_cols=72  Identities=15%  Similarity=0.092  Sum_probs=61.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ++.++++..+..+--+.|..+.+-..-| .++.+.+++.+|+.+++.+.+..|..+.+--.++.+++. .++.+
T Consensus        24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~-~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~   95 (160)
T PF09613_consen   24 GDPDDAEALLDALRVLRPEFPELDLFDG-WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS   95 (160)
T ss_pred             CChHHHHHHHHHHHHhCCCchHHHHHHH-HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH
Confidence            4789999999999999999999988888 555578999999999999999999999888888866665 77654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.46  E-value=0.3  Score=43.56  Aligned_cols=92  Identities=12%  Similarity=0.057  Sum_probs=63.9

Q ss_pred             CccccccCCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH-HHH
Q 027439          124 RWGSWDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDG-NVL  191 (223)
Q Consensus       124 ~gg~~Y~~~gd~~eA~~~y~~aLeldP~n~------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-----P~d~-~~l  191 (223)
                      ..+..|..-++|++|..++.++++-..+|.      ..+-..+ .+......+.+++.+|++|..+.     |+-. .++
T Consensus        36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaa-mLake~~klsEvvdl~eKAs~lY~E~GspdtAAmal  114 (308)
T KOG1585|consen   36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAA-MLAKELSKLSEVVDLYEKASELYVECGSPDTAAMAL  114 (308)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHH
Confidence            345556667899999999999996555443      3344444 33334678999999999998875     4333 233


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          192 SMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       192 ~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      -.-| -+.+ +-+.++|+.+|++++.+
T Consensus       115 eKAa-k~le-nv~Pd~AlqlYqralav  139 (308)
T KOG1585|consen  115 EKAA-KALE-NVKPDDALQLYQRALAV  139 (308)
T ss_pred             HHHH-HHhh-cCCHHHHHHHHHHHHHH
Confidence            3333 3556 78999999999999876

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.42  E-value=0.82  Score=41.40  Aligned_cols=84  Identities=13%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--HKDASRAESY  211 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~--~G~~eeAi~~  211 (223)
                      -.+..+.+|++|++.+|++..++..|-.... +.-+-++..+-+++++..+|+++.+|..|-+.....  .-.+.+.+..
T Consensus        46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~  124 (321)
T PF08424_consen   46 LAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV  124 (321)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            3467889999999999999999888876555 456888889999999999999999998888664442  2357788888


Q ss_pred             HHHHHHh
Q 027439          212 FDQAVKA  218 (223)
Q Consensus       212 fekAL~l  218 (223)
                      |.+++..
T Consensus       125 y~~~l~~  131 (321)
T PF08424_consen  125 YEKCLRA  131 (321)
T ss_pred             HHHHHHH
Confidence            8888764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.40  E-value=0.11  Score=31.50  Aligned_cols=29  Identities=28%  Similarity=0.279  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 027439          154 LLLSNYARFLKEARGDLLKAEEYCARAILM  183 (223)
Q Consensus       154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l  183 (223)
                      .++.++|.++. .++++++|+.++++++++
T Consensus         3 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYR-AQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence            45677775555 467888888877777765

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.19  E-value=0.25  Score=45.88  Aligned_cols=88  Identities=15%  Similarity=0.102  Sum_probs=74.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPND---GNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-dP~d---~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      |++.+|....++.++-.|.+..++..--.+++ .+|+.+.-...++|.+.. +|+.   ..++..|+.-+.. .|-|++|
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dA  194 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDA  194 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhH
Confidence            57788889999999999999988876665566 479999999999999988 7777   5666777755666 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      .+.-++++++||.|
T Consensus       195 Ek~A~ralqiN~~D  208 (491)
T KOG2610|consen  195 EKQADRALQINRFD  208 (491)
T ss_pred             HHHHHhhccCCCcc
Confidence            99999999999875

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.17  E-value=0.46  Score=42.10  Aligned_cols=67  Identities=15%  Similarity=0.097  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~---~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ..|.+-|.... ..|++++|+..|+++....|..+   .+...++-++++ .+++++|+.++++-+.+.|.+
T Consensus        35 ~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~  104 (254)
T COG4105          35 SELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTH  104 (254)
T ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCC
Confidence            33444443333 47999999999999999988765   667778877888 999999999999999999875

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.96  E-value=0.17  Score=30.62  Aligned_cols=29  Identities=10%  Similarity=0.137  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .++..+|.++.. .|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            467889988777 99999999999999876

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.89  E-value=0.1  Score=48.80  Aligned_cols=91  Identities=21%  Similarity=0.236  Sum_probs=68.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPR----N------PLLLSNYARFLKEARGDLLKAEEYCARAILMS------PNDGN  189 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~----n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld------P~d~~  189 (223)
                      |.+|...+|+++|.-+..+|+++-..    +      ..+++.++-.+. ++|+...|.++|++|.++.      +-...
T Consensus       169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~ar  247 (518)
T KOG1941|consen  169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQAR  247 (518)
T ss_pred             HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence            44555678999999999999986432    1      245566774455 5899999999999997763      33445


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      -+..+|+++.. .|+.++|...|++|...
T Consensus       248 c~~~~aDIyR~-~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  248 CLLCFADIYRS-RGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHh-cccHhHHHHHHHHHHHH
Confidence            56778888777 99999999999998754

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=93.85  E-value=0.078  Score=50.62  Aligned_cols=69  Identities=16%  Similarity=0.048  Sum_probs=61.3

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      .|.+.++|..|+.-+.+|++.+|....+|...|.++. ..+++.+|...|++...+.|+++.+...+..+
T Consensus        47 a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   47 AHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALGEFKKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             hheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            3455678999999999999999999999999986666 58999999999999999999999998887766

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.53  E-value=0.21  Score=45.78  Aligned_cols=66  Identities=11%  Similarity=-0.003  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       151 ~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +++.+.++.|..+| +.++|+.|++-|+.|++...-++-+-+++|-++|. .++++.|+++....++.
T Consensus       142 n~Ad~~in~gClly-kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  142 NEADGQINLGCLLY-KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIER  207 (459)
T ss_pred             Cccchhccchheee-ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHh
Confidence            56677788884445 57888888888888888888788787888877777 88888888877776654

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.21  E-value=0.61  Score=43.99  Aligned_cols=89  Identities=9%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD---ASRA  208 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g--dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~---~eeA  208 (223)
                      -.++-+.+...+++.+|+.-.+|+.+..++. ++.  ++..=+++|++++++||.|...|...=.++-.....   ..+-
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~-~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQ-KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence            5677888999999999999999999996666 344  478889999999999999887766554443332333   6677


Q ss_pred             HHHHHHHHHhCCCCC
Q 027439          209 ESYFDQAVKAAPDDW  223 (223)
Q Consensus       209 i~~fekAL~l~Pdn~  223 (223)
                      +++.++++..++.||
T Consensus       169 l~ftt~~I~~nfSNY  183 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNY  183 (421)
T ss_pred             HHHHHHHHhccchhh
Confidence            889999998888775

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.04  E-value=0.28  Score=27.86  Aligned_cols=27  Identities=19%  Similarity=0.315  Sum_probs=15.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYA  160 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA  160 (223)
                      +++.|...|++++...|.++.+|..++
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            445556666666666666666665555

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.88  E-value=0.7  Score=47.25  Aligned_cols=74  Identities=14%  Similarity=0.022  Sum_probs=57.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      +.|..++|..+++......+++...+..+- ++|..++++++|+.+|++++..+|+ -..+..+-.++.+ .+.|.+
T Consensus        55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~-~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~  128 (932)
T KOG2053|consen   55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQ-NVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKK  128 (932)
T ss_pred             HhcCchhHHHHHhhhccCCCCchHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHH
Confidence            457789999999888888888888887777 5555689999999999999999998 6666556555444 555543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.54  E-value=1.3  Score=32.64  Aligned_cols=27  Identities=15%  Similarity=0.165  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          191 LSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       191 l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +..+|.+... .|++++|+..++.|+++
T Consensus        44 ll~lA~~~~~-~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   44 LLNLAELHRR-FGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence            3334433333 45555555555555443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.47  E-value=0.45  Score=42.19  Aligned_cols=53  Identities=17%  Similarity=0.154  Sum_probs=41.3

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          166 ARGDLLKAEEYCARAILMSPNDGNVLS------MYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~------~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +..+.++|+.++++||++.-+-+....      .+|.++-....++++|+.+|++|-+-
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            357999999999999999876554433      67766555457999999999998653

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.34  E-value=0.4  Score=27.20  Aligned_cols=30  Identities=23%  Similarity=0.410  Sum_probs=26.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          168 GDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       168 gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      +++++|...|++++...|.++.+|..++..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            467899999999999999999999888854

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.07  E-value=0.16  Score=46.75  Aligned_cols=65  Identities=9%  Similarity=0.074  Sum_probs=55.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      +-|.+--..|.+++..+|.|++.|..-+.+-+...++++.+..++.+++.++|++|.+|..+-.+
T Consensus       121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence            56677778889999999999999987666666678999999999999999999999998776654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.07  E-value=0.92  Score=44.40  Aligned_cols=72  Identities=17%  Similarity=0.190  Sum_probs=53.7

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439          143 QKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK  217 (223)
Q Consensus       143 ~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~  217 (223)
                      ++-++.+|.|..+|..+-..+-  .+.++++.+.|++.+...|..+.+|..+....+. .++|+.-...|.+.|.
T Consensus        10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLV   81 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Confidence            6677788888888877764333  3478888888888888888888888887777676 7778877777777664

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.05  E-value=1.7  Score=40.25  Aligned_cols=74  Identities=19%  Similarity=0.232  Sum_probs=53.9

Q ss_pred             HHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------C------------CCC---HHHHHHHHH
Q 027439          146 IQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------------S------------PND---GNVLSMYGD  196 (223)
Q Consensus       146 LeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l--------------d------------P~d---~~~l~~lA~  196 (223)
                      ++.+|.+..++.+++.++. ++|+++.|.++++||+-.              +            +.|   ..+++.+..
T Consensus        33 l~~~PyHidtLlqls~v~~-~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYR-QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            3468899999999997666 589999988888888542              1            112   223344443


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          197 LIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       197 ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      .+.+ .|-+..|.++.+-.+.++|+
T Consensus       112 ~L~~-RG~~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  112 SLGR-RGCWRTALEWCKLLLSLDPD  135 (360)
T ss_pred             HHHh-cCcHHHHHHHHHHHHhcCCC
Confidence            4455 89999999999999999987

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.98  E-value=3.1  Score=33.36  Aligned_cols=84  Identities=11%  Similarity=0.048  Sum_probs=55.2

Q ss_pred             CChHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHHhCCHHHHH-------HHHHHHHHhCCCCHHHHH-
Q 027439          133 HGNNSTDLYYQKMIQADP------------RNPLLLSNYARFLKEARGDLLKAE-------EYCARAILMSPNDGNVLS-  192 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP------------~n~~~l~nlA~~l~~~~gdyeeA~-------~~~ekAL~ldP~d~~~l~-  192 (223)
                      +-|++|.+-|++++++.-            .++..+..|+.++. .+++|++++       .||.+-=+++.+....|. 
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa  101 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA  101 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence            578999999999998632            13556777776666 589997655       455555567777665553 


Q ss_pred             ---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          193 ---MYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       193 ---~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                         ..|..+-. .|+.++|+..|+++-++
T Consensus       102 aVfsra~Al~~-~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  102 AVFSRAVALEG-LGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence               33433444 99999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=91.78  E-value=0.41  Score=44.27  Aligned_cols=68  Identities=10%  Similarity=-0.049  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN----VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~----~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.-+-.=|+.++ +.++|..|+..|.+.|+..-.|++    .+.+.|.+.+. .|+|..|+.-+.+|++++|.+
T Consensus        81 Aen~KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h  152 (390)
T KOG0551|consen   81 AENYKEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTH  152 (390)
T ss_pred             HHHHHHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcch
Confidence            344556677777 478999999999999998766553    46667756565 899999999999999999975

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.64  E-value=0.72  Score=28.60  Aligned_cols=30  Identities=13%  Similarity=0.038  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCC
Q 027439          191 LSMYGDLIWQSHKDASRAESYFD--QAVKAAPD  221 (223)
Q Consensus       191 l~~lA~ll~~~~G~~eeAi~~fe--kAL~l~Pd  221 (223)
                      +..+|..++. .|++++|+.+|+  -+..+++.
T Consensus         4 ~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    4 LYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccc
Confidence            3444544444 555555555522  44444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.59  E-value=0.034  Score=51.27  Aligned_cols=55  Identities=22%  Similarity=0.249  Sum_probs=52.0

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       167 ~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .|.+++|++.|.+||+++|....++...+.++++ +++...|+..|..|+.++|+.
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Ds  181 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDS  181 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCccc
Confidence            5899999999999999999999999999998888 999999999999999999873

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.51  E-value=0.92  Score=37.73  Aligned_cols=91  Identities=15%  Similarity=0.057  Sum_probs=60.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHH---HHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVL---SMYGDL  197 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--P~d~~~l---~~lA~l  197 (223)
                      |..|.+.||.++|+++|.++.+.....   ...+.++-++... .+++..+..+..+|-.+-  +.|....   ..+..+
T Consensus        43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL  121 (177)
T PF10602_consen   43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL  121 (177)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            456777889999999999988765443   2344455544453 689999999988886653  2333322   223334


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 027439          198 IWQSHKDASRAESYFDQAVK  217 (223)
Q Consensus       198 l~~~~G~~eeAi~~fekAL~  217 (223)
                      +....++|.+|-..|-.++.
T Consensus       122 ~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  122 ANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHhchHHHHHHHHHccCc
Confidence            45558899999888877653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.51  E-value=2  Score=40.86  Aligned_cols=83  Identities=17%  Similarity=0.122  Sum_probs=63.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARF-LKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~-l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      .|+++.|.+.|+.++. +|..-.. .-.|.+ -.+++|+++.|..|-++|-+.-|.-+++....-..... .|+.+.|++
T Consensus       133 eG~~~~Ar~kfeAMl~-dPEtRll-GLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdWd~Alk  209 (531)
T COG3898         133 EGDYEDARKKFEAMLD-DPETRLL-GLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDWDGALK  209 (531)
T ss_pred             cCchHHHHHHHHHHhc-ChHHHHH-hHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCChHHHHH
Confidence            4899999999988764 4553332 233312 23467999999999999999999999887766666677 999999999


Q ss_pred             HHHHHHH
Q 027439          211 YFDQAVK  217 (223)
Q Consensus       211 ~fekAL~  217 (223)
                      +.++..+
T Consensus       210 Lvd~~~~  216 (531)
T COG3898         210 LVDAQRA  216 (531)
T ss_pred             HHHHHHH
Confidence            9987654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.42  E-value=0.52  Score=42.16  Aligned_cols=65  Identities=9%  Similarity=-0.003  Sum_probs=55.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL  191 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l  191 (223)
                      ..++...++|-++++.....+..+|.|..+++..|.+... -=+.++|.+-+.++++++|.-..+-
T Consensus       237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa-~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA-VWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHHH
Confidence            4455666899999999999999999999999999987764 4688999999999999999765543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.93  E-value=1.9  Score=37.10  Aligned_cols=71  Identities=14%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHH
Q 027439          136 NSTDLYYQKMIQA-DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       136 ~eA~~~y~~aLel-dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~----d~~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      ++|...|-++-.. .=+++.....+| .+|. ..|.++|+.++-+++++.+.    |++++..++.+++. +++++.|.
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALA-TYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhh
Confidence            5566555443221 225688888888 4443 68999999999999998755    48999999988888 99999885

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.91  E-value=1.9  Score=35.44  Aligned_cols=73  Identities=12%  Similarity=0.004  Sum_probs=60.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+.++++..+..+--+-|+++.+-..-+ +++.+.+++.+|+.+++...+-.+..+..--.++.+++. ++|.+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg-~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~   95 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDG-WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAE   95 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHH-HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChH
Confidence            35788999999888889999999888888 555578999999999999999888878777777866666 77654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.69  E-value=1.9  Score=38.86  Aligned_cols=81  Identities=19%  Similarity=0.046  Sum_probs=63.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD  213 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fe  213 (223)
                      +|..=+...++.++.  ....++..++..+. ..++++.++..+++.++.+|-+-..+..+-.+++. .|+...|+..|+
T Consensus       136 ~f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~  211 (280)
T COG3629         136 RFDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYR  211 (280)
T ss_pred             hHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHH
Confidence            355555555555543  34567778886666 47999999999999999999999888877777777 999999999999


Q ss_pred             HHHHh
Q 027439          214 QAVKA  218 (223)
Q Consensus       214 kAL~l  218 (223)
                      ++-+.
T Consensus       212 ~l~~~  216 (280)
T COG3629         212 QLKKT  216 (280)
T ss_pred             HHHHH
Confidence            98764

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.69  E-value=1.9  Score=39.99  Aligned_cols=88  Identities=9%  Similarity=0.078  Sum_probs=66.7

Q ss_pred             CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHcCCH
Q 027439          132 NHGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSP-----NDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~-n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP-----~d~~~l~~lA~ll~~~~G~~  205 (223)
                      .|.+..|.++.+-.+.+||. ++......-.++..+.++|+--+++++.......     .-|+..+..|-+++. .++-
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~-l~~~  194 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR-LEKE  194 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-hcCc
Confidence            47899999999999999999 7776656666677777899888888887665211     123455666655666 6666


Q ss_pred             ---------------HHHHHHHHHHHHhCC
Q 027439          206 ---------------SRAESYFDQAVKAAP  220 (223)
Q Consensus       206 ---------------eeAi~~fekAL~l~P  220 (223)
                                     ++|...+++|+...|
T Consensus       195 ~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP  224 (360)
T PF04910_consen  195 ESSQSSAQSGRSENSESADEALQKAILRFP  224 (360)
T ss_pred             cccccccccccccchhHHHHHHHHHHHHhH
Confidence                           899999999998876

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.64  E-value=0.8  Score=37.25  Aligned_cols=63  Identities=14%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             CCChHHHHHHHHHHHH-hCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQ-ADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLe-ldP~n~-~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      ..|..+-+.+++..++ ..|... ..++.+|-.++ +.++|++|..++...++.+|+|..+...--
T Consensus        48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            3578889999999997 555543 44445553455 689999999999999999999998875443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=90.44  E-value=3.8  Score=35.69  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             ChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 027439          134 GNNSTDLYYQKMIQADPRN-PLLLSNYARFLKEARG--------DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---  201 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n-~~~l~nlA~~l~~~~g--------dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~---  201 (223)
                      |..+|..+|+++.+..-.. ..+..+++.++.  .+        +..+|...|.+|-...  ++.+...++.++..-   
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv  203 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV  203 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence            7788888888888775554 344566664333  23        3347888888887765  667777777544331   


Q ss_pred             cCCHHHHHHHHHHHHHhC
Q 027439          202 HKDASRAESYFDQAVKAA  219 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~  219 (223)
                      ..++++|+.+|++|-+..
T Consensus       204 ~~d~~~A~~wy~~Aa~~g  221 (292)
T COG0790         204 PRDLKKAFRWYKKAAEQG  221 (292)
T ss_pred             CcCHHHHHHHHHHHHHCC
Confidence            227788888888887654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.43  E-value=1.2  Score=43.47  Aligned_cols=85  Identities=20%  Similarity=0.191  Sum_probs=54.2

Q ss_pred             CCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHH---hC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027439          132 NHGNNSTDLYYQKMIQA-----DPRNPLLLSNYARFLKEA---RG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLel-----dP~n~~~l~nlA~~l~~~---~g-dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~  202 (223)
                      .+|.+.|+.+|+.+.+.     .-.++.+...+|+++...   .. ++..|..+|.+|-.+..  ++..+.+|.++..-.
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~  339 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGT  339 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCC
Confidence            46888899998888771     111444566777555531   12 67888888888877654  445556775544422


Q ss_pred             --CCHHHHHHHHHHHHHh
Q 027439          203 --KDASRAESYFDQAVKA  218 (223)
Q Consensus       203 --G~~eeAi~~fekAL~l  218 (223)
                        .++.+|..+|..|.+.
T Consensus       340 ~~~d~~~A~~yy~~Aa~~  357 (552)
T KOG1550|consen  340 KERDYRRAFEYYSLAAKA  357 (552)
T ss_pred             ccccHHHHHHHHHHHHHc
Confidence              3466888888887643

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.39  E-value=2.7  Score=40.95  Aligned_cols=80  Identities=13%  Similarity=0.091  Sum_probs=61.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----CHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-----DAS  206 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~--gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-----~~e  206 (223)
                      |+..|..+|.++-+....+..+  .+|.++....  .++.+|.++|.+|...  .+..+.+.++.+ +. .|     +..
T Consensus       308 d~~~A~~~~~~aA~~g~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~-y~-~G~gv~r~~~  381 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGNPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALC-YE-LGLGVERNLE  381 (552)
T ss_pred             cHHHHHHHHHHHHhcCCchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHH-HH-hCCCcCCCHH
Confidence            7899999999988887666654  6664444323  4678999999999884  567788888854 44 44     888


Q ss_pred             HHHHHHHHHHHhC
Q 027439          207 RAESYFDQAVKAA  219 (223)
Q Consensus       207 eAi~~fekAL~l~  219 (223)
                      +|..+|++|.+.+
T Consensus       382 ~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  382 LAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999999876

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.24  E-value=0.18  Score=48.85  Aligned_cols=44  Identities=16%  Similarity=0.114  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 027439          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW  199 (223)
Q Consensus       155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~  199 (223)
                      +++|.| +++...|+.-.|.++|.+|+...-.+|.+|.++|.++.
T Consensus       337 ilYNcG-~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  337 ILYNCG-LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             hHHhhh-HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            344444 22323455555555555555555555555555554443

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.22  E-value=2.8  Score=39.61  Aligned_cols=87  Identities=11%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 027439          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-----------DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-  203 (223)
Q Consensus       136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g-----------dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-  203 (223)
                      ++++++=.+.++.+|+...+|+..-.++..++-           -.++-+.+.+.+++.+|+...+|....+++.. +. 
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~  124 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPH  124 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCC
Confidence            568888888889999998888665544433222           24566778899999999999999999998876 44 


Q ss_pred             -CHHHHHHHHHHHHHhCCCCC
Q 027439          204 -DASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       204 -~~eeAi~~fekAL~l~Pdn~  223 (223)
                       ++..-+..++++++.+|.||
T Consensus       125 ~~~~~EL~lcek~L~~D~RNf  145 (421)
T KOG0529|consen  125 SDWNTELQLCEKALKQDPRNF  145 (421)
T ss_pred             chHHHHHHHHHHHHhcCcccc
Confidence             36899999999999999887

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.17  E-value=0.88  Score=40.71  Aligned_cols=59  Identities=19%  Similarity=0.037  Sum_probs=46.5

Q ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          163 LKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       163 l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+.+.++++.|..+.++.+.++|+++.-+..-|-++.. .+.+.-|+..++..++.-|++
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCc
Confidence            34456888888888888888888888888888865555 888888888888887777664

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=89.84  E-value=3.8  Score=35.63  Aligned_cols=81  Identities=20%  Similarity=0.251  Sum_probs=63.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-------
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA---RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-------  203 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~---~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-------  203 (223)
                      +...|...|.++-...  ++.+..++|.++..-   ..++++|..+|.+|-+...  ...++.++ +++. .|       
T Consensus       170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~-~g~g~~~~~  243 (292)
T COG0790         170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL-NGEGVKKAA  243 (292)
T ss_pred             HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh-cCCCchhhh
Confidence            4458999999988877  777788899544431   2489999999999999876  88888888 6676 56       


Q ss_pred             --------CHHHHHHHHHHHHHhCC
Q 027439          204 --------DASRAESYFDQAVKAAP  220 (223)
Q Consensus       204 --------~~eeAi~~fekAL~l~P  220 (223)
                              +...|..+++++-...+
T Consensus       244 ~~~~~~~~~~~~a~~~~~~~~~~~~  268 (292)
T COG0790         244 FLTAAKEEDKKQALEWLQKACELGF  268 (292)
T ss_pred             hcccccCCCHHHHHHHHHHHHHcCC
Confidence                    88889999988876543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.81  E-value=1.3  Score=43.13  Aligned_cols=76  Identities=17%  Similarity=0.145  Sum_probs=49.2

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      .|-++.+.+.|.-+..+|.+|++      .+...+.+      | +..+ ..|  .+ .......++++.|.+++. .|+
T Consensus       289 lGcIh~~~~~y~~~~~~F~kAL~------N~c~qL~~------g-~~~~-~~~--tl-s~nks~eilYNcG~~~Lh-~gr  350 (696)
T KOG2471|consen  289 LGCIHYQLGCYQASSVLFLKALR------NSCSQLRN------G-LKPA-KTF--TL-SQNKSMEILYNCGLLYLH-SGR  350 (696)
T ss_pred             cceEeeehhhHHHHHHHHHHHHH------HHHHHHhc------c-CCCC-cce--eh-hcccchhhHHhhhHHHHh-cCC
Confidence            34556677899999999999997      11122221      1 0000 000  01 123457788999966666 999


Q ss_pred             HHHHHHHHHHHHHh
Q 027439          205 ASRAESYFDQAVKA  218 (223)
Q Consensus       205 ~eeAi~~fekAL~l  218 (223)
                      .-.|.+.|++++..
T Consensus       351 Pl~AfqCf~~av~v  364 (696)
T KOG2471|consen  351 PLLAFQCFQKAVHV  364 (696)
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999999876

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.78  E-value=2.6  Score=42.19  Aligned_cols=85  Identities=7%  Similarity=-0.049  Sum_probs=60.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          132 NHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      .++|..+++.|...++.-|.+      +....+++ ++|..+.+.++|.++++.|=+.+|.++--...+.-+... .+.-
T Consensus       367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~-~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~S  444 (872)
T KOG4814|consen  367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQ-VCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDKS  444 (872)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcch
Confidence            368888888888888765543      44556666 556567888888888888888888887665555544444 7788


Q ss_pred             HHHHHHHHHHHHh
Q 027439          206 SRAESYFDQAVKA  218 (223)
Q Consensus       206 eeAi~~fekAL~l  218 (223)
                      ++|+....+....
T Consensus       445 e~AL~~~~~~~s~  457 (872)
T KOG4814|consen  445 EEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHHHHHhh
Confidence            8888877766543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.66  E-value=4  Score=36.01  Aligned_cols=67  Identities=12%  Similarity=0.032  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 027439          154 LLLSNYARFLKEAR------GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK----------------DASRAESY  211 (223)
Q Consensus       154 ~~l~nlA~~l~~~~------gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G----------------~~eeAi~~  211 (223)
                      .++..+|.++.. .      .+++++...|.+|+.++|+...+++.+|..+.....                -...|+..
T Consensus       253 ~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~  331 (352)
T PF02259_consen  253 KAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG  331 (352)
T ss_pred             HHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence            456677766654 5      788999999999999999999999999977433211                11358888


Q ss_pred             HHHHHHhCCC
Q 027439          212 FDQAVKAAPD  221 (223)
Q Consensus       212 fekAL~l~Pd  221 (223)
                      |-+++...++
T Consensus       332 y~~al~~~~~  341 (352)
T PF02259_consen  332 YLKALSLGSK  341 (352)
T ss_pred             HHHHHhhCCC
Confidence            8888888765

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=89.66  E-value=3.4  Score=39.33  Aligned_cols=52  Identities=15%  Similarity=0.206  Sum_probs=34.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          169 DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       169 dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      |...|...-.+++++.|+....-..-+..++. .|+..++-..++.+++.+|.
T Consensus       244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         244 DPASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             ChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCCC
Confidence            44445555556666777766666666666666 77777777777777777663

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.63  E-value=3  Score=41.00  Aligned_cols=89  Identities=12%  Similarity=0.133  Sum_probs=76.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      .+.+.+...|...+...|.---+|..+|..-+ +.+..+++++.|++++..-|-....|..|-..+-...++.+.-...|
T Consensus        59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f  137 (577)
T KOG1258|consen   59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLF  137 (577)
T ss_pred             hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            35578888899999999999999999996555 58999999999999999999999999888877777788999999999


Q ss_pred             HHHHHhCCCC
Q 027439          213 DQAVKAAPDD  222 (223)
Q Consensus       213 ekAL~l~Pdn  222 (223)
                      ++|+...--+
T Consensus       138 e~A~~~vG~d  147 (577)
T KOG1258|consen  138 ERAKSYVGLD  147 (577)
T ss_pred             HHHHHhcccc
Confidence            9998765433

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.59  E-value=1.7  Score=42.14  Aligned_cols=87  Identities=15%  Similarity=0.061  Sum_probs=70.6

Q ss_pred             ChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHHcC
Q 027439          134 GNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS---PND----GNVLSMYGDLIWQSHK  203 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld---P~d----~~~l~~lA~ll~~~~G  203 (223)
                      +...+++|++..+...|..   +....++|..++....+++.|..++++|+.+.   |+.    .++...++.++.....
T Consensus        24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~  103 (629)
T KOG2300|consen   24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ  103 (629)
T ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence            6789999999999888775   46678899888888899999999999998765   443    2456677777776555


Q ss_pred             CHHHHHHHHHHHHHhCC
Q 027439          204 DASRAESYFDQAVKAAP  220 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~P  220 (223)
                      .+..|...+++|+++..
T Consensus       104 s~~~~KalLrkaielsq  120 (629)
T KOG2300|consen  104 SFPPAKALLRKAIELSQ  120 (629)
T ss_pred             CCchHHHHHHHHHHHhc
Confidence            88899999999998854

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.49  E-value=1.6  Score=39.13  Aligned_cols=63  Identities=11%  Similarity=0.092  Sum_probs=55.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD  196 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~  196 (223)
                      ++++.|..+.++.+.++|.++.-+...| .+|.+++.+.-|++-++..++..|+++.+...-+.
T Consensus       195 ~~~~~al~~~~r~l~l~P~dp~eirDrG-liY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         195 LQWELALRVAERLLDLNPEDPYEIRDRG-LIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             hchHHHHHHHHHHHhhCCCChhhccCcH-HHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            7889999999999999999999999999 55557999999999999999999999987665553

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.09  E-value=3.3  Score=37.34  Aligned_cols=84  Identities=17%  Similarity=0.173  Sum_probs=73.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLL-KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdye-eA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      +..+-..++.+.++.+|.|-.+|..+- ++-+..+++. .-++++.+++..+..|..+|...-+++.. -+.++.-+++.
T Consensus        93 dL~~El~~l~eI~e~npKNYQvWHHRr-~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~-F~~~~~EL~y~  170 (318)
T KOG0530|consen   93 DLNKELEYLDEIIEDNPKNYQVWHHRR-VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRF-FKDYEDELAYA  170 (318)
T ss_pred             HHHHHHHHHHHHHHhCccchhHHHHHH-HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHH-HhhHHHHHHHH
Confidence            677888999999999999999998887 5555688887 88899999999999999999999988877 67799999999


Q ss_pred             HHHHHhC
Q 027439          213 DQAVKAA  219 (223)
Q Consensus       213 ekAL~l~  219 (223)
                      .+.++.+
T Consensus       171 ~~Lle~D  177 (318)
T KOG0530|consen  171 DELLEED  177 (318)
T ss_pred             HHHHHHh
Confidence            9988775

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=89.00  E-value=3.8  Score=33.95  Aligned_cols=55  Identities=20%  Similarity=0.099  Sum_probs=49.2

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +.++.++++.++...-.+.|+.+.+...-++++.. .|++.+|+..|+.+....|.
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~   76 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPG   76 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCC
Confidence            46899999999999999999999999999988887 99999999999998776654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=88.76  E-value=1.3  Score=44.22  Aligned_cols=89  Identities=12%  Similarity=0.152  Sum_probs=70.3

Q ss_pred             cCCCChHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPR------------------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL  191 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~------------------n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l  191 (223)
                      ...++++.|..++++|..+--.                  ...+|..|+. |-+-.|-++.-...|++.|.+.--.|.+.
T Consensus       436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D-leEs~gtfestk~vYdriidLriaTPqii  514 (835)
T KOG2047|consen  436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD-LEESLGTFESTKAVYDRIIDLRIATPQII  514 (835)
T ss_pred             HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence            3456788888888887764211                  2356888884 44457999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          192 SMYGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       192 ~~lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      .+||.++-. +.-+++|.+.|+|.+.+.+
T Consensus       515 ~NyAmfLEe-h~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  515 INYAMFLEE-HKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHHHHHHHh-hHHHHHHHHHHHcCCccCC
Confidence            999976666 8889999999999887753

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.64  E-value=0.61  Score=26.36  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFD  213 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fe  213 (223)
                      ++..+|.+++. .|++++|+..++
T Consensus         3 a~~~la~~~~~-~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLA-QGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHh
Confidence            44455555555 566666655554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.34  E-value=1.8  Score=26.75  Aligned_cols=33  Identities=15%  Similarity=0.081  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHH--HHHHHHhCCCC
Q 027439          154 LLLSNYARFLKEARGDLLKAEEY--CARAILMSPND  187 (223)
Q Consensus       154 ~~l~nlA~~l~~~~gdyeeA~~~--~ekAL~ldP~d  187 (223)
                      +.+..+|..++ .++++++|+.+  |.-+..+++.|
T Consensus         2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence            45677886666 58999999999  55888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=87.88  E-value=2.4  Score=43.78  Aligned_cols=57  Identities=21%  Similarity=0.367  Sum_probs=43.6

Q ss_pred             ccccccCCCChHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQ---------------------ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL  182 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLe---------------------ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~  182 (223)
                      ||...++.|+++.|+.+|..|-.                     ....|..+.+.+|+ .|+..+++.+|+.+|.||-.
T Consensus       918 WgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR-~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  918 WGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLAR-MYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHH-HhhhhHHHHHHHHHHHHHHH
Confidence            77788888999999999987654                     23456666778885 44467999999999988744

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=87.86  E-value=9.8  Score=33.51  Aligned_cols=89  Identities=11%  Similarity=0.082  Sum_probs=53.8

Q ss_pred             CCCChHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh----CC---CC-------
Q 027439          131 NNHGNNSTDLYYQKMIQAD-PRNP-------LLLSNYARFLKEARG-DLLKAEEYCARAILM----SP---ND-------  187 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeld-P~n~-------~~l~nlA~~l~~~~g-dyeeA~~~~ekAL~l----dP---~d-------  187 (223)
                      .++|++.|..+|.++-... ..++       ..+++.|..++. .+ +++.|+..+++|+++    .+   ..       
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            3568899999998887655 3333       345555555553 57 899999998888877    21   11       


Q ss_pred             HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCC
Q 027439          188 GNVLSMYGDLIWQSHKDAS---RAESYFDQAVKAAPD  221 (223)
Q Consensus       188 ~~~l~~lA~ll~~~~G~~e---eAi~~fekAL~l~Pd  221 (223)
                      ..++..++.++.. .+.++   +|..+++.+....|+
T Consensus        84 ~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~  119 (278)
T PF08631_consen   84 LSILRLLANAYLE-WDTYESVEKALNALRLLESEYGN  119 (278)
T ss_pred             HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCC
Confidence            2345566655555 44443   455555555444443

It is also involved in sporulation [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=87.53  E-value=5  Score=39.49  Aligned_cols=89  Identities=13%  Similarity=0.152  Sum_probs=73.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-PNDGNVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-P~d~~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      ..|+++...-.|++.+--.-....+|.+|+.++-. .++.+-|...+.++.++. |.-+.++..+|.+ -..+|++..|.
T Consensus       309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~-~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f-~e~~~n~~~A~  386 (577)
T KOG1258|consen  309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMES-SGDVSLANNVLARACKIHVKKTPIIHLLEARF-EESNGNFDDAK  386 (577)
T ss_pred             hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH-cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH-HHhhccHHHHH
Confidence            45899999999999999999999999999988875 699999998888887765 6666777777754 44489999999


Q ss_pred             HHHHHHHHhCCC
Q 027439          210 SYFDQAVKAAPD  221 (223)
Q Consensus       210 ~~fekAL~l~Pd  221 (223)
                      ..+++....-|+
T Consensus       387 ~~lq~i~~e~pg  398 (577)
T KOG1258|consen  387 VILQRIESEYPG  398 (577)
T ss_pred             HHHHHHHhhCCc
Confidence            999998765553

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.36  E-value=1.1  Score=28.17  Aligned_cols=29  Identities=14%  Similarity=0.406  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +++..+|.+-.. ..+|+.|+.-|++++++
T Consensus         2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLE-NENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence            456777877777 78888888888888765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=86.87  E-value=5.3  Score=35.24  Aligned_cols=89  Identities=15%  Similarity=0.233  Sum_probs=61.0

Q ss_pred             CCCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C-C------------------
Q 027439          131 NNHGNNSTDLYYQKMIQADP----RNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-P-N------------------  186 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP----~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-P-~------------------  186 (223)
                      ..|.++.|..++.++...++    ..+.+....++.+.. .|+..+|+..++..+... . .                  
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE  236 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence            45788888888888887652    246667778877774 788889988888887711 1 0                  


Q ss_pred             --------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCC
Q 027439          187 --------------DGNVLSMYGDLIWQSH------KDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       187 --------------d~~~l~~lA~ll~~~~------G~~eeAi~~fekAL~l~Pd  221 (223)
                                    -..++..+|..+.. .      +..++++..|++|++.+|+
T Consensus       237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  237 VISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             cccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChh
Confidence                          12334444444434 4      7788888999999888775

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.68  E-value=3.9  Score=30.07  Aligned_cols=52  Identities=13%  Similarity=0.073  Sum_probs=39.3

Q ss_pred             CCChHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 027439          132 NHGNNSTDLYYQKMIQADP----RN-----PLLLSNYARFLKEARGDLLKAEEYCARAILMS  184 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP----~n-----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld  184 (223)
                      .+||.+|.+.+.+.+....    ..     ..++.++|.... ..|++++|+..+++|+.+-
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Confidence            5799999888888776422    22     456778885555 5899999999999998874

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=86.54  E-value=3.3  Score=34.34  Aligned_cols=49  Identities=22%  Similarity=0.269  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          171 LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       171 eeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +..++..++.++..| ++.++..++.++.. +|+.++|....+++..+.|.
T Consensus       128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  128 EAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCc
Confidence            445566677777777 67777888866666 88888888888888877773

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.52  E-value=7.3  Score=38.54  Aligned_cols=88  Identities=17%  Similarity=0.172  Sum_probs=64.5

Q ss_pred             CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHHcC--
Q 027439          132 NHGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARA-----ILMSPNDGNVLSMYGDLIWQSHK--  203 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~-n~~~l~nlA~~l~~~~gdyeeA~~~~ekA-----L~ldP~d~~~l~~lA~ll~~~~G--  203 (223)
                      .|-+..|.++++-.+.++|. ++.+...+-.++..+..+|+=-+++++..     +.+-|+.+..+ .+|.++.....  
T Consensus       355 RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-AlA~f~l~~~~~~  433 (665)
T KOG2422|consen  355 RGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-ALARFFLRKNEED  433 (665)
T ss_pred             cCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-HHHHHHHhcCChh
Confidence            47888999999999999999 88887777777777778887777776665     44457655333 34444444233  


Q ss_pred             CHHHHHHHHHHHHHhCC
Q 027439          204 DASRAESYFDQAVKAAP  220 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~P  220 (223)
                      ..+.|...+++|+++.|
T Consensus       434 ~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  434 DRQSALNALLQALKHHP  450 (665)
T ss_pred             hHHHHHHHHHHHHHhCc
Confidence            25789999999999887

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=85.61  E-value=3.6  Score=42.48  Aligned_cols=84  Identities=25%  Similarity=0.323  Sum_probs=58.7

Q ss_pred             CCChHHHHHHHHHHHHhCCCC------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHH-------
Q 027439          132 NHGNNSTDLYYQKMIQADPRN------------------------PLLLSNYARFLKEARGDLLKAEEYCARA-------  180 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n------------------------~~~l~nlA~~l~~~~gdyeeA~~~~ekA-------  180 (223)
                      .+-.++|+.+|++.-+.|=-|                        -..|+++|..+-. .+|.+.|+++|+|+       
T Consensus       813 LgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea-r~Di~~AleyyEK~~~hafev  891 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA-RRDIEAALEYYEKAGVHAFEV  891 (1416)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh-hccHHHHHHHHHhcCChHHHH
Confidence            466777777777654432111                        2457899977775 68999999999964       


Q ss_pred             ---HHhCC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439          181 ---ILMSP----------NDGNVLSMYGDLIWQSHKDASRAESYFDQAVK  217 (223)
Q Consensus       181 ---L~ldP----------~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~  217 (223)
                         +.-+|          .|+..|..+| .|+...|+.+.|+.+|..|-.
T Consensus       892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWg-qYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  892 FRMLKEYPKQIEQYVRRKRDESLYSWWG-QYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HHHHHhChHHHHHHHHhccchHHHHHHH-HHHhcccchHHHHHHHHHhhh
Confidence               22233          3566777777 577779999999999998853

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=84.88  E-value=7.5  Score=38.30  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=67.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      +-++++.+.|++.+...|..+.+|..+....+ +.++|+..+.+|.|++.--= +.+.|..|-....+..++...+....
T Consensus        33 ~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El-~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m  110 (656)
T KOG1914|consen   33 QPIDKVRETYEQLVNVFPSSPRAWKLYIEREL-ASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKM  110 (656)
T ss_pred             CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHH
Confidence            47899999999999999999999999997777 47999999999999988533 57788888777777777777766666


Q ss_pred             HHHHH
Q 027439          213 DQAVK  217 (223)
Q Consensus       213 ekAL~  217 (223)
                      -+|.+
T Consensus       111 ~qAy~  115 (656)
T KOG1914|consen  111 VQAYD  115 (656)
T ss_pred             HHHHH
Confidence            55543

>PLN03138 Protein TOC75; Provisional

Probab=83.35  E-value=0.89  Score=46.32  Aligned_cols=17  Identities=12%  Similarity=0.292  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          171 LKAEEYCARAILMSPND  187 (223)
Q Consensus       171 eeA~~~~ekAL~ldP~d  187 (223)
                      ...++.+.+++.+.|..
T Consensus       164 ~~~e~~l~~~i~~kpG~  180 (796)
T PLN03138        164 VGTEDSFFEMVTLRPGG  180 (796)
T ss_pred             cchHHHHHHHHhcCCCC
Confidence            34556677777777763

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.27  E-value=9  Score=31.76  Aligned_cols=63  Identities=22%  Similarity=0.173  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~---~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .++..+|.++. +.|++++|++.|.++..-.-...   +.+..+-.+.+. .+++.....++.||-.+
T Consensus        37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   37 MALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence            56789997666 58999999999999888654433   334445555666 89999999999998654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.23  E-value=12  Score=33.64  Aligned_cols=81  Identities=14%  Similarity=0.071  Sum_probs=45.5

Q ss_pred             CChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---H---HHHHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQAD-----PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---V---LSMYGDLIWQS  201 (223)
Q Consensus       133 gd~~eA~~~y~~aLeld-----P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~---~---l~~lA~ll~~~  201 (223)
                      ..+.+++.+|+++..+.     |+.+..-...|.-+.+ +.+.++|+.+|++++.+--.+..   +   +...+.++.+ 
T Consensus        85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr-  162 (308)
T KOG1585|consen   85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR-  162 (308)
T ss_pred             HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh-
Confidence            45566777777776652     3333222222222332 56788888888888776443322   2   2233333455 


Q ss_pred             cCCHHHHHHHHHHH
Q 027439          202 HKDASRAESYFDQA  215 (223)
Q Consensus       202 ~G~~eeAi~~fekA  215 (223)
                      ..++.+|-..|.|-
T Consensus       163 l~kf~Eaa~a~lKe  176 (308)
T KOG1585|consen  163 LEKFTEAATAFLKE  176 (308)
T ss_pred             hHHhhHHHHHHHHh
Confidence            77788887777663

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=82.15  E-value=4.8  Score=38.87  Aligned_cols=50  Identities=18%  Similarity=0.292  Sum_probs=44.0

Q ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439          163 LKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (223)
Q Consensus       163 l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA  215 (223)
                      +| -+|+|.++.-+..=..++.| .+.++..+|-+++. +.+|++|-.++...
T Consensus       472 Ly-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  472 LY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQKL  521 (549)
T ss_pred             HH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHhC
Confidence            45 37999999999999999999 89999999977777 99999999988754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=82.07  E-value=9.6  Score=32.70  Aligned_cols=61  Identities=15%  Similarity=0.120  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Q 027439          135 NNSTDLYYQKMIQADPR------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGD  196 (223)
Q Consensus       135 ~~eA~~~y~~aLeldP~------n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~-~~l~~lA~  196 (223)
                      +.+|...|+++++....      ...++..+| .+..+.|++++|.++|.+++...-... ..+..+|.
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLig-eL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIG-ELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            35688888888875533      245666777 555589999999999999998543222 24445553

>COG4907 Predicted membrane protein [Function unknown]

Probab=81.62  E-value=1  Score=43.15  Aligned_cols=10  Identities=30%  Similarity=0.597  Sum_probs=5.8

Q ss_pred             CCCCCccccc
Q 027439           19 KDSSPVPFTL   28 (223)
Q Consensus        19 ~~~~~~~~~~   28 (223)
                      ||.+||.|.+
T Consensus       502 ke~~pesI~~  511 (595)
T COG4907         502 KEAKPESIHL  511 (595)
T ss_pred             hhCCCcceeh
Confidence            4567775444

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=81.41  E-value=1.3  Score=41.09  Aligned_cols=25  Identities=44%  Similarity=0.699  Sum_probs=15.0

Q ss_pred             ceeeeccccCCCCCCCCCCCCCCCC
Q 027439           94 IGVLVGGGIYGGGGNMCGGGGGSDG  118 (223)
Q Consensus        94 ~~~~~g~g~~g~gg~~~g~~~g~~g  118 (223)
                      .++-.||+-+|.||.+.|.++|++|
T Consensus       351 ~~~eqgg~Rgg~Gg~~gGrGgGRGg  375 (465)
T KOG3973|consen  351 QVLEQGGSRGGSGGNWGGRGGGRGG  375 (465)
T ss_pred             chhhccCCCCCCCCCCCCCCCCCCC
Confidence            4454565556666667776666643

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.21  E-value=21  Score=35.12  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHHcCCH
Q 027439          136 NSTDLYYQKMIQADPR----NPLLLSNYARFLKEARGDLLKAEEYCARAILMSP--NDGNV----LSMYGDLIWQSHKDA  205 (223)
Q Consensus       136 ~eA~~~y~~aLeldP~----n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP--~d~~~----l~~lA~ll~~~~G~~  205 (223)
                      ..|+.|++-+++..+-    .+.++..||..|+....++++|+.+++|++.+..  +..+.    .+.++.++.+ .+..
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~~  116 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNPK  116 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCHH
Confidence            4577777777742222    2567888888888777889999999999877763  33322    2234444444 3333


Q ss_pred             HHHHHHHHHHHHh
Q 027439          206 SRAESYFDQAVKA  218 (223)
Q Consensus       206 eeAi~~fekAL~l  218 (223)
                       .|+.+++++++.
T Consensus       117 -~a~~~l~~~I~~  128 (608)
T PF10345_consen  117 -AALKNLDKAIED  128 (608)
T ss_pred             -HHHHHHHHHHHH
Confidence             388888887765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=81.00  E-value=16  Score=26.84  Aligned_cols=54  Identities=11%  Similarity=0.072  Sum_probs=37.3

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHH
Q 027439          162 FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL---IWQSHKDASRAESYFDQAVK  217 (223)
Q Consensus       162 ~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l---l~~~~G~~eeAi~~fekAL~  217 (223)
                      -+|. ..+.++|+..++++++..++.+.-+..+|.+   +.. .|+|.+++++-.+=+.
T Consensus        15 kLY~-~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen   15 KLYH-QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLE   71 (80)
T ss_pred             HHhc-cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            3553 6788889999999998888777666666654   333 6777777766555443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.52  E-value=2.4  Score=23.87  Aligned_cols=25  Identities=36%  Similarity=0.239  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 027439          154 LLLSNYARFLKEARGDLLKAEEYCAR  179 (223)
Q Consensus       154 ~~l~nlA~~l~~~~gdyeeA~~~~ek  179 (223)
                      .+..++|..+. .+|++++|+..+++
T Consensus         2 ~a~~~la~~~~-~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALL-AQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHhC
Confidence            35678897777 58999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-10
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	5e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-04
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	9e-04

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 57.1 bits (137), Expect = 5e-10
 Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +Q+M        LLL+  A     A+G    AE     A+         L     L   
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACH-MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
             K       Y  Q   A    
Sbjct: 247 LGKPPEVTNRYLSQLKDAHRSH 268

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 12/83 (14%), Positives = 18/83 (21%), Gaps = 2/83 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARF-LKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199
             +KM   D    L     A   L      L  A                +L+       
Sbjct: 152 ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA-ACH 210

Query: 200 QSHKDASRAESYFDQAVKAAPDD 222
            +      AE    +A+      
Sbjct: 211 MAQGRWEAAEGVLQEALDKDSGH 233

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 1/82 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y+K++Q +  N         +         K  E   + +             G L   
Sbjct: 110 MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG-LSKL 168

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                 +A +   + +   P  
Sbjct: 169 FTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +Y++++Q  P N   L   A      RG    A     + + +  ++       G+  + 
Sbjct: 76  FYKELLQKAPNNVDCLEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134

Query: 201 SHKDASRAESYFDQAVKAAPDDW 223
           + +   +      + + +     
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQ 157

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 11/88 (12%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY 194
           + +   Y+  + +    +  L +  A   K+   +  KA  +    +  +PN+ + L   
Sbjct: 36  DRTEMYYWTNVDKNSEISSKLATELALAYKK-NRNYDKAYLFYKELLQKAPNNVDCLEAC 94

Query: 195 GDLIWQSHKDASRAESYFDQAVKAAPDD 222
            + +         A   +++ ++   D+
Sbjct: 95  AE-MQVCRGQEKDALRMYEKILQLEADN 121

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 53.4 bits (129), Expect = 8e-09
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           Y++K ++ +   P +    A  L +   + + A +Y          +   L +    + +
Sbjct: 163 YFEKSLRLNRNQPSVALEMADLLYK-EREYVPARQYYDLFAQGGGQNARSLLLGI-RLAK 220

Query: 201 SHKDASRAESYFDQAVKAAPD 221
             +D   A SY  Q  +  P 
Sbjct: 221 VFEDRDTAASYGLQLKRLYPG 241

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLI 198
            Y+K + +D RN  +L+NY  FL E +    +A +    A   +  P    V    G L+
Sbjct: 93  EYRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLG-LV 150

Query: 199 WQSHKDASRAESYFDQAVKAAPD 221
               K  ++A+ YF+++++   +
Sbjct: 151 SLQMKKPAQAKEYFEKSLRLNRN 173

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
            +K ++ DP +    +  A   +    +   A+E   +A+     +  VL+ YG      
Sbjct: 60  LRKALEIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRNARVLNNYG-GFLYE 117

Query: 202 HKDASRAESYFDQAVK 217
            K    A     +A +
Sbjct: 118 QKRYEEAYQRLLEASQ 133

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 11/90 (12%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
            G++  D    K  +                 + RG+  +A+    +A+ + P+  +  +
Sbjct: 17  RGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQ-RGNTEQAKVPLRKALEIDPSSADAHA 75

Query: 193 MYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
               +++Q+  +   A+  + +A+ +   +
Sbjct: 76  ALA-VVFQTEMEPKLADEEYRKALASDSRN 104

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
             +  ++  P++ +     A       GD    E    R + + P     ++  G  +  
Sbjct: 11  QLRAAVRHRPQDFVAWLMLADAELG-MGDTTAGEMAVQRGLALHPGHPEAVARLGR-VRW 68

Query: 201 SHKDASRAESYFDQAVKAAPDDW 223
           + +  + A     QA  AAP+  
Sbjct: 69  TQQRHAEAAVLLQQASDAAPEHP 91

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
             Q+ +   P +P  ++   R     +    +A     +A   +P    +    G    +
Sbjct: 45  AVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLLQQASDAAPEHPGIALWLGH-ALE 102

Query: 201 SHKDASRAESYFDQAVKAAPDDW 223
               A  A + + +A +  P++ 
Sbjct: 103 DAGQAEAAAAAYTRAHQLLPEEP 125

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
             Q+   A P +P +       L++A G    A     RA  + P +  + +       +
Sbjct: 79  LLQQASDAAPEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLL-NWRR 136

Query: 201 SHKDASRAESYFDQAVKAAPD 221
              D    +    Q   A   
Sbjct: 137 RLCDWRALDVLSAQVRAAVAQ 157

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 1/56 (1%)

Query: 168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW 223
            D  +       A+   P D     M  D       D +  E    + +   P   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLAD-AELGMGDTTAGEMAVQRGLALHPGHP 57

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 14/88 (15%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 141 YYQKMIQADPRNPLLLSNYA--RFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL- 197
            ++K ++  P+NP   S  A   +  +       A +   +AI ++P++  +  +     
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 198 --IWQSHKDASRAESYFDQAVKAAPDDW 223
             + +  ++    E   ++A++ AP   
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVT 247

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDL 197
           + +K  +A+     + S  A     A     +AE Y  +             +   YG+ 
Sbjct: 322 HLKKADEANDNLFRVCSILASLHALA-DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF 380

Query: 198 IWQSHKDASRAESYFDQAVKAAPD 221
                K   +A  +F + VK    
Sbjct: 381 QLYQMKCEDKAIHHFIEGVKINQK 404

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEAR---GDLLKAEEYCARAILMSPNDGNVLSMYGDL 197
             ++ I+ +P N  L    A  L + R    +  + E+    A+  +P   +VL      
Sbjct: 197 PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA-K 255

Query: 198 IWQSHKDASRAESYFDQAVKAAPDD 222
            ++   +  +A     +A++  P++
Sbjct: 256 FYRRKDEPDKAIELLKKALEYIPNN 280

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 19/100 (19%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSM 193
             ++ ++  P    +L + A+F +  + +  KA E   +A+   PN+       G     
Sbjct: 235 LVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293

Query: 194 YGDLIWQSHKDASR-----------AESYFDQAVKAAPDD 222
               +    ++              A ++  +A +A  + 
Sbjct: 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 13/100 (13%), Positives = 24/100 (24%), Gaps = 19/100 (19%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKE------------------ARGDLLKAEEYCARAIL 182
             +K ++  P N  L        +                       +  A  +  +A  
Sbjct: 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328

Query: 183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
            + N   V S+    +         AE YF +        
Sbjct: 329 ANDNLFRVCSILA-SLHALADQYEEAEYYFQKEFSKELTP 367

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLI 198
            +++ +   P +  + +NY  FL        ++  Y  +A+     P         G + 
Sbjct: 64  SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG-IC 122

Query: 199 WQSHKDASRAESYFDQAVKAAPD 221
                    AE+Y  +++ A P 
Sbjct: 123 SAKQGQFGLAEAYLKRSLAAQPQ 145

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
            +  +++DP+N L     A   +       KA+E   +A+ + P+   + + YG  +   
Sbjct: 31  IEDALKSDPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89

Query: 202 HKDASRAESYFDQAVK 217
               + + +YFD+A+ 
Sbjct: 90  LNRPAESMAYFDKALA 105

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 2/81 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +Q +   D  +            +A G    A    +   +M   +        +    
Sbjct: 43  VFQALCVLDHYDSRFFLGLGACR-QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE-CLL 100

Query: 201 SHKDASRAESYFDQAVKAAPD 221
              + + AES    A +   +
Sbjct: 101 QXGELAEAESGLFLAQELIAN 121

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 2/80 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
            + M+     N LL     +   E       A  +   A+   P         G    Q 
Sbjct: 8   LEAMLAQGTDNMLLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTYSVAWKWLGK-TLQG 65

Query: 202 HKDASRAESYFDQAVKAAPD 221
             D + A   ++  + AA  
Sbjct: 66  QGDRAGARQAWESGLAAAQS 85

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 9/84 (10%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
             Q  I+A+P+N    +    +    + D   +     +A+ +   +  + +    +++ 
Sbjct: 32  ALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYY 90

Query: 201 S--HKDASRAESYFDQAVKAAPDD 222
                  ++  +  D+A+    ++
Sbjct: 91  QASQHMTAQTRAMIDKALALDSNE 114

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEA--RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199
           Y++ +Q    N  L +  A  L     +    +      +A+ +  N+   L +      
Sbjct: 67  YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA-SDA 125

Query: 200 QSHKDASRAESYFDQAVKAAPDD 222
               + ++A   + + +      
Sbjct: 126 FMQANYAQAIELWQKVMDLNSPR 148

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +++ +   D  N   +   A   +  +    +A +  A A  +  ND   +   G    +
Sbjct: 58  FFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
             K   +A+  F+  ++ + D+
Sbjct: 117 L-KAPLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
            + +          + +YA       G + +AE +     +    + + +      I+Q 
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNK-GRIEEAEVFFRFLCIYDFYNVDYIMGLA-AIYQI 82

Query: 202 HKDASRAESYFDQAVKAAPDDW 223
            +   +A   +  A     +D+
Sbjct: 83  KEQFQQAADLYAVAFALGKNDY 104

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +  ++ + +P N  +L   +  +      L ++  +   AI  +P      S  G  +++
Sbjct: 21  HCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG-NVYK 78

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                  A  ++  A++  PD 
Sbjct: 79  ERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +    I+ +P      SN     KE RG L +A E+   A+ + P+  +           
Sbjct: 55  FSTLAIKQNPLLAEAYSNLGNVYKE-RGQLQEAIEHYRHALRLKPDFIDGYINLA-AALV 112

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
           +  D   A   +  A++  PD 
Sbjct: 113 AAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +++K +  DP       N    LKE      +A     RA+ +SPN   V       ++ 
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKE-ARIFDRAVAAYLRALSLSPNHAVVHGNLA-CVYY 248

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                  A   + +A++  P  
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +Y+  ++  P       N A  L  A GD+  A +    A+  +P+   V S  G  + +
Sbjct: 89  HYRHALRLKPDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPDLYCVRSDLG-NLLK 146

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
           +      A++ + +A++  P+ 
Sbjct: 147 ALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y   +Q +P    + S+    LK   G L +A+    +AI   PN     S  G  ++ 
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKA-LGRLEEAKACYLKAIETQPNFAVAWSNLG-CVFN 180

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
           +  +   A  +F++AV   P+ 
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y++ I+  P  P    N A  LKE +G + +AE+    A+ + P   + L+     I +
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKE-KGSVAEAEDCYNTALRLCPTHADSLNNLA-NIKR 316

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              +   A   + +A++  P+ 
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEF 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y   ++  P +   L+N A   +E +G++ +A     +A+ + P      S     + Q
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQ 350

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                  A  ++ +A++ +P  
Sbjct: 351 QQGKLQEALMHYKEAIRISPTF 372

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 142 YQKMIQADPRNPLLL-SNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           Y +++  +  +P L+   Y +F +     +        +A   +    +V      + + 
Sbjct: 122 YNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
             KD S A   F+  +K   D 
Sbjct: 181 CSKDKSVAFKIFELGLKKYGDI 202

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 9/88 (10%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY 194
           N  ++    + +     N  ++ + A        D     +  +  +   P   + L ++
Sbjct: 4   NKPSETVIPESVDGLQENLDVVVSLAERHYY-NCDFKMCYKLTSVVMEKDPFHASCLPVH 62

Query: 195 GDLIWQSHKDASRAESYFDQAVKAAPDD 222
              + + +K  +       + V   P +
Sbjct: 63  IGTLVELNKA-NELFYLSHKLVDLYPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y    Q      L +            +   AE + ++A+ ++P D  V+   G ++  
Sbjct: 147 AYFTAAQLMKGCHLPMLYIGLEYGL-TNNSKLAERFFSQALSIAPEDPFVMHEVG-VVAF 204

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
            + +   AE +F  A++     
Sbjct: 205 QNGEWKTAEKWFLDALEKIKAI 226

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSM--YGDL- 197
           ++ + +   P +P ++        +  G+   AE++   A+      GN +++  +  L 
Sbjct: 181 FFSQALSIAPEDPFVMHEVGVVAFQ-NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239

Query: 198 -----IWQSHKDASRAESYFDQAVKAAPDD 222
                + +  K  + A  Y  QA+   P +
Sbjct: 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQN 269

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 10/88 (11%), Positives = 25/88 (28%), Gaps = 15/88 (17%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSMY 194
             K++   P NP+       +          A  Y ++A  +           G+  ++ 
Sbjct: 79  SHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE 138

Query: 195 GDLIWQSHKDASRAESYFDQAVKAAPDD 222
            +          +A + +  A +     
Sbjct: 139 SEH--------DQAMAAYFTAAQLMKGC 158

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208
             +   LL+N     ++      +A +Y  +A+++ P + +  S  G  I     +   A
Sbjct: 232 VDKWEPLLNNLGHVCRK-LKKYAEALDYHRQALVLIPQNASTYSAIG-YIHSLMGNFENA 289

Query: 209 ESYFDQAVKAAPDD 222
             YF  A+    DD
Sbjct: 290 VDYFHTALGLRRDD 303

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           Y+++ +   P+N    S          G+   A +Y   A+ +  +D   ++M G  I  
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSL-MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316

Query: 201 SHKDASRAESY 211
              D+      
Sbjct: 317 YIGDSEAYIGA 327

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
           Y   I    ++  LL   A  L   R   +       + + + P + +V  ++   + +S
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFV-RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352

Query: 202 HKDASRAESYFDQAVKAAPDD 222
            +  ++     +  V   P+ 
Sbjct: 353 GEK-NKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
            +K    +       +N     ++       A +   + +L+S ND NV +    L++  
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRK-LKMYDAAIDALNQGLLLSTNDANVHTAIA-LVYLH 562

Query: 202 HKDASRAESYFDQAVKAAPDD 222
            K    A ++  +++  +P++
Sbjct: 563 KKIPGLAITHLHESLAISPNE 583

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 10/100 (10%), Positives = 27/100 (27%), Gaps = 10/100 (10%)

Query: 131 NNHGNNSTDL--------YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182
             H  +  +             ++   P   +       +       + +A  Y +++  
Sbjct: 343 PLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC-VNKISEARRYFSKSST 401

Query: 183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
           M P  G     +    +    +  +A S +  A +     
Sbjct: 402 MDPQFGPAWIGFA-HSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 16/89 (17%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSM 193
              K+++ DP N  +   +   L E+ G+  K        +   P         G     
Sbjct: 327 ITTKILEIDPYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385

Query: 194 YGDLIWQSHKDASRAESYFDQAVKAAPDD 222
              +        S A  YF ++    P  
Sbjct: 386 VNKI--------SEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y    +      L          +  G++L A EY   +  +   D  +L+  G ++  
Sbjct: 429 AYTTAARLFQGTHLPYLFLGMQHMQ-LGNILLANEYLQSSYALFQYDPLLLNELG-VVAF 486

Query: 201 SHKDASRAESYFDQAVKAAPD 221
           +  D   A ++F  A+     
Sbjct: 487 NKSDMQTAINHFQNALLLVKK 507

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 48.3 bits (114), Expect = 8e-07
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +Y++ I+  P      SN    LKE   D+  A +   RAI ++P   +  S     I +
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEM-QDVQGALQCYTRAIQINPAFADAHSNLAS-IHK 122

Query: 201 SHKDASRAESYFDQAVKAAPD 221
              +   A + +  A+K  PD
Sbjct: 123 DSGNIPEAIASYRTALKLKPD 143

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y+K ++  P      SN A  L++ +G L +A  +   AI +SP   +  S  G    +
Sbjct: 31  LYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMG-NTLK 88

Query: 201 SHKDASRAESYFDQAVKAAPDDW 223
             +D   A   + +A++  P   
Sbjct: 89  EMQDVQGALQCYTRAIQINPAFA 111

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207
           + P +   L+N A   +E  G++ +A     +A+ + P      S     + Q       
Sbjct: 4   SCPTHADSLNNLANIKREQ-GNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQQQGKLQE 61

Query: 208 AESYFDQAVKAAPDD 222
           A  ++ +A++ +P  
Sbjct: 62  ALMHYKEAIRISPTF 76

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y + IQ +P      SN A   K++ G++ +A      A+ + P+  +          Q
Sbjct: 99  CYTRAIQINPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPDFPDAYCNLA-HCLQ 156

Query: 201 SHKDASRAESYFDQAVKAAPDDW 223
              D +  +    + V    D  
Sbjct: 157 IVCDWTDYDERMKKLVSIVADQL 179

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +Q +   D  +           + + G   +A +  +   LM  N+             
Sbjct: 40  IFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAA-ECHL 97

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              D   AES F  A   A   
Sbjct: 98  QLGDLDGAESGFYSARALAAAQ 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 9/81 (11%), Positives = 19/81 (23%), Gaps = 2/81 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
              +          L        +A G    A++      ++   D       G    QS
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQA-GKWDDAQKIFQALCMLDHYDARYFLGLG-ACRQS 64

Query: 202 HKDASRAESYFDQAVKAAPDD 222
                +A   +        ++
Sbjct: 65  LGLYEQALQSYSYGALMDINE 85

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 15/89 (16%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSM 193
             ++++ +       L    + L        +AE   ++A+ + P         G V   
Sbjct: 90  QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149

Query: 194 YGDLIWQSHKDASRAESYFDQAVKAAPDD 222
            GD+        + A + F  A+    + 
Sbjct: 150 KGDV--------TSAHTCFSGALTHCKNK 170

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMY 194
              K ++ +P      +       + +GD+  A    + A+    N         VL   
Sbjct: 125 LLSKAVKLEPELVEAWNQLGEVYWK-KGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQL 183

Query: 195 G-DLIWQSHKDASRAESYFDQAVKAAPDD 222
             D   +  +    +      AV+    D
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 10/66 (15%), Positives = 26/66 (39%)

Query: 157 SNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAV 216
            +  R  ++ + ++ K  +     +  +  +   L + G  +  +   +  AE    +AV
Sbjct: 71  EDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV 130

Query: 217 KAAPDD 222
           K  P+ 
Sbjct: 131 KLEPEL 136

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +  K+++    +  L    A    +  G+  KA      A  +  ++          ++ 
Sbjct: 165 FLDKILEVCVWDAELRELRAECFIK-EGEPRKAISDLKAASKLKNDNTEAFYKIS-TLYY 222

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              D   + S   + +K   D 
Sbjct: 223 QLGDHELSLSEVRECLKLDQDH 244

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +   +  DP N +     A       G    A     + I +  +        G  +  
Sbjct: 48  QFHAAVDGDPDNYIAYYRRATVFLAM-GKSKAALPDLTKVIQLKMDFTAARLQRG-HLLL 105

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                  AE  F + +K+ P +
Sbjct: 106 KQGKLDEAEDDFKKVLKSNPSE 127

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 21/99 (21%)

Query: 122 DGRW---------GSWDPNNHGNNS-TDL-YYQKMIQ-ADPRNPLLLSNYARFLKEARGD 169
           D R+          +W+ +    N+   L +Y+  I   DP+   L++    FL +   +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 170 LLKAEEYC-ARAILMSPNDGNVLSMYGDLIWQSHKDASR 207
           L+ ++     R  LM+ ++     ++ +    +HK   R
Sbjct: 559 LICSKYTDLLRIALMAEDEA----IFEE----AHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 36/220 (16%), Positives = 60/220 (27%), Gaps = 78/220 (35%)

Query: 1   MLLRSSSTP----IL-NSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPL 55
            LL+S        +L N     A ++    F L+     C  L + TR    TD   L  
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNA----FNLS-----CKILLT-TRFKQVTD--FLSA 283

Query: 56  PKKKATSNVFNGLALEEKEDESETASFDGGWLG-------KEACEIGVLVGGGIYGGGGN 108
                 S   + + L   E +S        +L        +E           I      
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNPRRLSII----AE 335

Query: 109 MCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG 168
                      DG   W +W    H N         +I++              L     
Sbjct: 336 SI--------RDGLATWDNWK---HVNCDK---LTTIIES-------------SL----- 363

Query: 169 DLLKAEE----YCARAILMSPNDGN----VLSMYGDLIWQ 200
           ++L+  E    +   ++   P   +    +LS+     W 
Sbjct: 364 NVLEPAEYRKMFDRLSVF--PPSAHIPTILLSLI----WF 397

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +   +  DP N +     A       G    A     + I +  +        G  +  
Sbjct: 25  QFHAAVDGDPDNYIAYYRRATVFLAM-GKSKAALPDLTKVIALKMDFTAARLQRG-HLLL 82

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
                  AE  F + +K+ P +
Sbjct: 83  KQGKLDEAEDDFKKVLKSNPSE 104

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +  K+++    +  L    A    +  G+  KA      A  +  ++          ++ 
Sbjct: 142 FLDKILEVCVWDAELRELRAECFIK-EGEPRKAISDLKAASKLKSDNTEAFYKIS-TLYY 199

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              D   + S   + +K   D 
Sbjct: 200 QLGDHELSLSEVRECLKLDQDH 221

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 15/96 (15%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLI-- 198
              K+I                L + +G L +AE+   + +  +P++         L+  
Sbjct: 59  DLTKVIALKMDFTAARLQRGHLLLK-QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117

Query: 199 ------------WQSHKDASRAESYFDQAVKAAPDD 222
                            D + A ++ D+ ++    D
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            + K  + DP N       A             E   + A    P    V + +   I  
Sbjct: 326 DFDKAKELDPENIFPYIQLACLAYR-ENKFDDCETLFSEAKRKFPEAPEVPNFFA-EILT 383

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              D  +A   +D A++     
Sbjct: 384 DKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 17/108 (15%)

Query: 131 NNHGNNSTDL--------YYQKMIQADPRNPLLLSNYARFLKEAR--------GDLLKAE 174
           N      TD          Y   I+ + +   +    A  + +A          + ++A 
Sbjct: 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435

Query: 175 EYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
               +A  + P            +    +D   A + F+++   A   
Sbjct: 436 NLLEKASKLDPRSEQAKIGLA-QMKLQQEDIDEAITLFEESADLARTM 482

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 7/82 (8%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            ++K  +       +    A        D   A +     +    +    +  Y D +  
Sbjct: 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS- 436

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              + +     F++ + +    
Sbjct: 437 HLNEDNNTRVLFERVLTSGSLP 458

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 142 YQKMIQADPRNPLLLS-NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           Y +++  +  +P L+   Y +F +     +        +A   +    +V      + + 
Sbjct: 344 YNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
             KD S A   F+  +K   D 
Sbjct: 403 CSKDKSVAFKIFELGLKKYGDI 424

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            YQ  +  D     +      +     G+   A +Y  + I  +  D  V    G   + 
Sbjct: 96  QYQAAVDRDTTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRPTTTDPKVFYELG-QAYY 153

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
            +K+  +A+S F + ++  P+ 
Sbjct: 154 YNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 13/89 (14%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSM 193
           Y +K I+    +P +     +       + +KA+    + + + PN            + 
Sbjct: 130 YMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKPNIYIGYLWRARANAA 188

Query: 194 YGDLIWQSHKDASRAESYFDQAVKAAPDD 222
                         A+ Y+++ ++     
Sbjct: 189 QDPD-----TKQGLAKPYYEKLIEVCAPG 212

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 5/85 (5%)

Query: 141 YYQKMIQ---ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197
           YY+K I                    +   G+  KAE   A  +   PN   +   Y  +
Sbjct: 12  YYEKAIASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQFPNHQALRVFYA-M 69

Query: 198 IWQSHKDASRAESYFDQAVKAAPDD 222
           +  +     +      + +    DD
Sbjct: 70  VLYNLGRYEQGVELLLKIIAETSDD 94

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            +QK    +P N       A  L + +G   ++E +     L  P    V + +   I  
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYK-QGKFTESEAFFNETKLKFPTLPEVPTFFA-EILT 389

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
              D   A   +D A +     
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQ 411

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208
           DP +P      A+   +   +  +A       +   P+        G L ++       A
Sbjct: 3   DPEDPFTRYALAQEHLKH-DNASRALALFEELVETDPDYVGTYYHLGKL-YERLDRTDDA 60

Query: 209 ESYFDQAVKAAPD 221
              + Q ++ A +
Sbjct: 61  IDTYAQGIEVARE 73

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 16/95 (16%)

Query: 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------G 188
               L    +      + L + +   F      +  +       A+ M+PND       G
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAP-NEYRECRTLLHAALEMNPNDAQLHASLG 179

Query: 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW 223
            + ++  +           A +   +AV+  PDD 
Sbjct: 180 VLYNLSNNY--------DSAAANLRRAVELRPDDA 206

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD---- 196
           +Y K I+ DP N    +N A    E      +  ++C +A+ +         +       
Sbjct: 30  HYDKAIELDPSNITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88

Query: 197 --LIWQSHKDASRAESYFDQAVKAAPD 221
               +Q   D S A  +F +++    D
Sbjct: 89  AGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 141 YYQKMIQADPRNPLLLSN-YARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199
            Y + I  +P   +  +N    +LK       +A   C RA+ +           G    
Sbjct: 31  CYGRAITRNPLVAVYYTNRALCYLK--MQQPEQALADCRRALELDGQSVKAHFFLG-QCQ 87

Query: 200 QSHKDASRAESYFDQAVKAAPDD 222
              +    A +   +A   A + 
Sbjct: 88  LEMESYDEAIANLQRAYSLAKEQ 110

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 12/89 (13%), Positives = 21/89 (23%), Gaps = 10/89 (11%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP-------NDGNVLSMY 194
            Q+ ++  P N   L   A            A E     I  +P       N      + 
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTN-TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLT 180

Query: 195 GDL--IWQSHKDASRAESYFDQAVKAAPD 221
             +             +  + +A     D
Sbjct: 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGD 209

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 11/107 (10%), Positives = 30/107 (28%), Gaps = 24/107 (22%)

Query: 131 NNHGNNSTDL--------YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182
            + G +              +++  AD  +  +  +      +  G + +  E   R++ 
Sbjct: 12  RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-TGAVDRGTELLERSLA 70

Query: 183 MSPND-------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
            +P++       G                   A     +  +A P +
Sbjct: 71  DAPDNVKVATVLGLTYVQVQKY--------DLAVPLLIKVAEANPIN 109

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 10/100 (10%)

Query: 131 NNHGNNSTDL--------YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182
            +H      L           +     P   + +++     + A   + +      +A  
Sbjct: 144 ASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ-ALETVQRLLPVLCQAHG 202

Query: 183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
           ++P     ++  G    Q+ +   R      QA    P  
Sbjct: 203 LTPQQVVAIASNG-GGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201
             +     P   + ++++    + A   +        +A  ++P     ++  G    Q+
Sbjct: 129 LCQAHGLTPEQVVAIASHDGGKQ-ALETVQALLPVLCQAHGLTPEQVVAIASNG-GGKQA 186

Query: 202 HKDASRAESYFDQAVKAAPDD 222
            +   R      QA    P  
Sbjct: 187 LETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 12/100 (12%), Positives = 32/100 (32%), Gaps = 10/100 (10%)

Query: 131 NNHGNNSTDL--------YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182
            ++G     L           +     P   + ++++    + A   + +      +A  
Sbjct: 382 ASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ-ALETVQRLLPVLCQAHG 440

Query: 183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
           ++P     ++  G     + +      S  D A+ A  +D
Sbjct: 441 LTPQQVVAIASNG-GGRPALESIVAQLSRPDPALAALTND 479

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 11/100 (11%)

Query: 131 NNHGNNSTDL--------YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182
           N  G   T           +  +++ DP       N    L    G    A++       
Sbjct: 81  NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQ 139

Query: 183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
             PND          + +   D  +A+    Q  + +  +
Sbjct: 140 DDPNDPFRSLWLY--LAEQKLDEKQAKEVLKQHFEKSDKE 177

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 131 NNHGNNSTDL--------YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182
            N  N  + +        +Y K ++ D                 +    +A++   +A+ 
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV-KEMYKEAKDMFEKALR 119

Query: 183 MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
               +G++  M G  +    +    A  Y  +AV+   +D
Sbjct: 120 AGMENGDLFYMLG-TVLVKLEQPKLALPYLQRAVELNEND 158

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 8/110 (7%)

Query: 117 DGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLL----LSNYARFLKEARGDLLK 172
           +    D     W  +   ++ T   Y K  Q +  NPL              +  GDL  
Sbjct: 26  EMAKRDAEAHPWLSDY--DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE-GDLPN 82

Query: 173 AEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
           A      A+   P         G      ++    A S   + ++  PD+
Sbjct: 83  AVLLFEAAVQQDPKHMEAWQYLG-TTQAENEQELLAISALRRCLELKPDN 131

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 12/97 (12%), Positives = 24/97 (24%), Gaps = 3/97 (3%)

Query: 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186
                    +        MI+  P +  L     +    +     +  E   +     P 
Sbjct: 40  RPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHH-VSLKQWKQVYETFDKLHDRFPL 98

Query: 187 DGNVLSMYGDLIWQ--SHKDASRAESYFDQAVKAAPD 221
             N+  M   L +      DA+  E    + +     
Sbjct: 99  MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELG 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.64
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.62
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.6
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.58
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.57
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.55
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.55
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.52
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.52
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.51
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.5
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.48
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.47
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.47
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.46
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.46
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.45
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.45
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.44
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.43
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.43
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.42
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.42
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.41
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.4
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.4
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.4
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.37
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.37
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.37
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.36
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.36
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.36
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.36
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.33
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.33
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.32
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.3
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.3
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.29
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.28
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.27
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.27
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.26
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.26
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.25
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.25
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.25
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.24
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.24
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.22
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.22
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.21
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.2
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.2
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.19
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.19
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.19
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.19
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.19
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.19
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.19
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.18
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.18
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.17
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.16
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.16
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.14
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.14
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.13
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.11
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.1
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.1
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.08
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.07
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.05
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.03
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.03
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.02
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.02
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.01
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.01
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.98
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.97
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.97
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.96
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.94
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.94
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.94
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.92
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.91
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.9
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.9
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.89
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.87
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.86
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.84
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.84
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.83
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.82
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.81
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.8
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.79
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.79
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.78
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.78
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.78
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.78
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.77
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.77
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.77
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.77
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.76
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.75
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.75
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.74
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.74
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.72
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.72
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.72
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.71
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.7
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.69
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.66
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.65
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.64
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.63
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.62
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.62
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.62
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.61
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.6
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.6
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.59
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.59
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.58
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.58
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.55
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.55
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.53
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.52
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.52
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.51
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.49
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.44
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.42
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.41
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.4
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.39
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.38
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.36
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.35
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.24
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.19
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.16
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.07
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.06
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.03
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.02
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.97
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.92
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.82
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.81
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.78
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.77
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.61
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.53
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.4
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.39
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.38
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.3
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.26
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.26
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.18
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.04
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.8
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.75
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.57
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.55
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.47
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.47
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.84
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.71
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.35
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.28
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	95.25
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.19
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.86
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.59
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.11
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.05
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.32
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.51
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.22
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.07
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	89.39
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	85.27
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	84.26
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	84.24
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	83.13

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.71  E-value=8.7e-17  Score=123.21  Aligned_cols=95  Identities=18%  Similarity=0.231  Sum_probs=89.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...|+|++|+.+|+++++++|.++.++.++|.++. .++++++|+..|+++++++|+++.++..+|.++.. .|++
T Consensus        20 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~   97 (126)
T 4gco_A           20 GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREW   97 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCH
Confidence            456778899999999999999999999999999997666 68999999999999999999999999999988887 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|+++++++|+|
T Consensus        98 ~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           98 SKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCcCC
Confidence            99999999999999987

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.64  E-value=1.2e-15  Score=121.64  Aligned_cols=94  Identities=15%  Similarity=0.153  Sum_probs=87.1

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...|++++|+.+|+++++++|+++.+|.++|.++. .+++|++|+.+|++|++++|+++.+++.+|.++.. .|+++
T Consensus        44 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg~~~  121 (151)
T 3gyz_A           44 YDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LKAPL  121 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHH
Confidence            44566789999999999999999999999999997666 68999999999999999999999999999988887 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|++++++.|++
T Consensus       122 eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          122 KAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHhCCCH
Confidence            9999999999999863

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.62  E-value=1.7e-15  Score=118.64  Aligned_cols=95  Identities=15%  Similarity=0.216  Sum_probs=84.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...++|++|+.+|+++++++|+++.+|.++|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .+++
T Consensus        38 a~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~  115 (150)
T 4ga2_A           38 AKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-NDVT  115 (150)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HCSS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCh
Confidence            467788899999999999999999999999999996665 68999999999999999999999999999988887 8888


Q ss_pred             HHHHHH-HHHHHHhCCCC
Q 027439          206 SRAESY-FDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~-fekAL~l~Pdn  222 (223)
                      ++|... +++|++++|+|
T Consensus       116 ~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A          116 DGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             SSHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhCcCC
Confidence            776654 69999999986

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.60  E-value=6.5e-15  Score=115.32  Aligned_cols=95  Identities=22%  Similarity=0.273  Sum_probs=88.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...++|++|+.+|+++++++|+++.++.++|.+++ .++++++|+.+|+++++++|+++.++..+|.+++. .|++
T Consensus        18 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~   95 (164)
T 3sz7_A           18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MADY   95 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCH
Confidence            345667899999999999999999999999999997666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++++|++
T Consensus        96 ~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           96 KGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             HHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            99999999999999986

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=6.4e-15  Score=110.06  Aligned_cols=92  Identities=21%  Similarity=0.094  Sum_probs=85.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+.+|+++++++|+++.++.++|.++. .++++++|+..|+++++++|+++.++..+|.++.. .|++
T Consensus        11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~   88 (126)
T 3upv_A           11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEY   88 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCH
Confidence            345667889999999999999999999999999997666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhC
Q 027439          206 SRAESYFDQAVKAA  219 (223)
Q Consensus       206 eeAi~~fekAL~l~  219 (223)
                      ++|+..|+++++++
T Consensus        89 ~~A~~~~~~al~~~  102 (126)
T 3upv_A           89 ASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999998

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.58  E-value=8.4e-15  Score=111.84  Aligned_cols=94  Identities=19%  Similarity=0.322  Sum_probs=84.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-------NVLSMYGDLI  198 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~-------~~l~~lA~ll  198 (223)
                      |..|...++|++|+.+|+++++++|+++.++.++|.++. .+++|++|+..|+++++++|++.       .++..+|.++
T Consensus        15 G~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~   93 (127)
T 4gcn_A           15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF   93 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            456777899999999999999999999999999997666 58999999999999999998763       5778888777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Q 027439          199 WQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       199 ~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      .. .+++++|+.+|++++...|+
T Consensus        94 ~~-~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           94 QK-QNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHSCC
T ss_pred             HH-cCCHHHHHHHHHHHHhhCcC
Confidence            77 99999999999999998876

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.58  E-value=1.2e-14  Score=114.02  Aligned_cols=94  Identities=12%  Similarity=0.023  Sum_probs=86.9

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...+++++|+.+|+++++++|.++.+|.++|.++. ..+++++|+.+|++++.++|+++.+++.+|.++.. .|+++
T Consensus        29 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~  106 (148)
T 2vgx_A           29 FNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XGELA  106 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHH
Confidence            44566789999999999999999999999999997666 58999999999999999999999999999988887 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++++|++
T Consensus       107 ~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A          107 EAESGLFLAQELIANX  122 (148)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCcCC
Confidence            9999999999998864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.58  E-value=9.9e-15  Score=112.30  Aligned_cols=94  Identities=16%  Similarity=0.031  Sum_probs=86.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+...+++++|+.+|+++++.+|+++.+|.++|.++. ..+++++|+.+|++++.++|+++.+++.+|.++.. .|+++
T Consensus        26 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~  103 (142)
T 2xcb_A           26 FNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LGDLD  103 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHH
Confidence            44566789999999999999999999999999997666 68999999999999999999999999999988887 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++++|++
T Consensus       104 ~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A          104 GAESGFYSARALAAAQ  119 (142)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999998864

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.57  E-value=8.7e-15  Score=111.04  Aligned_cols=94  Identities=12%  Similarity=-0.018  Sum_probs=82.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+...+++++|+.+|+++++.+|+++.+|..+|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. .|+++
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~  102 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNAN  102 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            34556789999999999999999999999999997666 58999999999999999999999999999988777 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+..|+++++++|++
T Consensus       103 ~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          103 AALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHhCcCC
Confidence            9999999999999975

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.55  E-value=5e-15  Score=116.00  Aligned_cols=96  Identities=14%  Similarity=0.130  Sum_probs=87.5

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -|.+|...+++++|++.|++++..+|+++..+.++|.+++ ..++|++|+++|+++++++|+++.++..+|.++.. .|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCc
Confidence            4677888899999999999999999999999999997776 58999999999999999999999999999988887 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      +++|+.+|+++++++|++
T Consensus        81 ~~~A~~~~~~al~~~p~~   98 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQ   98 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHhCCCC
Confidence            999999999999999986

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.55  E-value=1.4e-14  Score=113.21  Aligned_cols=95  Identities=17%  Similarity=0.126  Sum_probs=87.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQA------------------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND  187 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLel------------------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d  187 (223)
                      |..|...++|++|+.+|++++++                  +|.+..++.++|.++. .+++|++|+.+|++|+.++|++
T Consensus        18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~   96 (162)
T 3rkv_A           18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETN   96 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcc
Confidence            34566778999999999999999                  7888899999997666 6899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       188 ~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.+++.+|.+++. .|++++|+..|+++++++|+|
T Consensus        97 ~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A           97 EKALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCC
Confidence            9999999988888 999999999999999999975

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.52  E-value=2e-14  Score=117.13  Aligned_cols=93  Identities=9%  Similarity=0.044  Sum_probs=84.7

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPR-------NPL-----LLSNYARFLKEARGDLLKAEEYCARAILM-------SPNDG  188 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~-------n~~-----~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-------dP~d~  188 (223)
                      .+...|+|++|+.+|+++++++|+       +..     +|.|+|.++. .+++|++|+..|++||++       +|+++
T Consensus        20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~   98 (159)
T 2hr2_A           20 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEG   98 (159)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence            345568999999999999999999       544     9999996666 699999999999999999       99999


Q ss_pred             HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          189 NVL----SMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       189 ~~l----~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+|    ++.|.++.. +|++++|+..|++|++++|+|
T Consensus        99 ~A~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           99 KLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCc
Confidence            999    999988877 999999999999999999876

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.52  E-value=6.6e-14  Score=104.80  Aligned_cols=94  Identities=15%  Similarity=0.115  Sum_probs=86.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+.+|+++++.+|.++.++.++|.++. .++++++|+.+|++++.++|+++.++..+|.+++. .|++
T Consensus        16 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~   93 (137)
T 3q49_B           16 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESY   93 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhH
Confidence            345667789999999999999999999999999996666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCC
Q 027439          206 SRAESYFDQAVKAAPD  221 (223)
Q Consensus       206 eeAi~~fekAL~l~Pd  221 (223)
                      ++|+.+|+++++++|+
T Consensus        94 ~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           94 DEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHChh
Confidence            9999999999999876

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.51  E-value=2.1e-13  Score=97.74  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=87.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|+.++++++..+|+++.++..+|.++.. .|+++
T Consensus        12 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~   89 (118)
T 1elw_A           12 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFE   89 (118)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHH
Confidence            44566789999999999999999999999999997666 58999999999999999999999999999988887 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++.+|++
T Consensus        90 ~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           90 EAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=6.6e-14  Score=114.64  Aligned_cols=93  Identities=13%  Similarity=0.139  Sum_probs=86.4

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSN----------------YARFLKEARGDLLKAEEYCARAILMSPNDGNVL  191 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~n----------------lA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l  191 (223)
                      .+...+++++|+.+|+++++++|+++.++..                +|.++. ..+++++|+.+|+++++++|+++.++
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~   91 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDCL   91 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence            3456789999999999999999999999999                996666 68999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       192 ~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ..+|.+++. .|++++|+.+|+++++++|++
T Consensus        92 ~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           92 EACAEMQVC-RGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC
Confidence            999988888 999999999999999999986

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.50  E-value=3.4e-14  Score=105.83  Aligned_cols=89  Identities=16%  Similarity=0.189  Sum_probs=80.1

Q ss_pred             CCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          132 NHGNNSTDLYYQKMIQA---DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLel---dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      .+++++|+.+|++++++   +|+++.++.++|.++. .+++|++|+.+|+++++++|+++.++..+|.+++. .|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence            46899999999999999   6999999999997666 58999999999999999999999999999988887 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      +.+|+++++..|++
T Consensus        81 ~~~~~~al~~~p~~   94 (117)
T 3k9i_A           81 VELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhCCCc
Confidence            99999999998875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=101.12  Aligned_cols=95  Identities=17%  Similarity=0.147  Sum_probs=87.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+.+|+++++.+|.+..++.++|.++. ..+++++|+.+|+++++++|+++.++..+|.+++. .|++
T Consensus        23 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~  100 (133)
T 2lni_A           23 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDY  100 (133)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhH
Confidence            445567799999999999999999999999999996665 58999999999999999999999999999988887 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus       101 ~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A          101 TKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             HHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            99999999999999875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.49  E-value=1.9e-13  Score=97.40  Aligned_cols=95  Identities=15%  Similarity=0.065  Sum_probs=87.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSH-  202 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~--d~~~l~~lA~ll~~~~-  202 (223)
                      |.+|...+++++|+.+|+++++.+|.+..++.++|.++. ..+++++|+.+|+++++.+|+  +..++..+|.++.. . 
T Consensus        13 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~   90 (112)
T 2kck_A           13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IE   90 (112)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CS
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-Hh
Confidence            456677899999999999999999999999999997666 589999999999999999999  99999999988777 9 


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 027439          203 KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 G~~eeAi~~fekAL~l~Pdn  222 (223)
                      |++++|+.+|++++...|++
T Consensus        91 ~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           91 GKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             SCSHHHHHHHHHHGGGCCCC
T ss_pred             CCHHHHHHHHHHHhhcccCC
Confidence            99999999999999999875

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.9e-13  Score=101.58  Aligned_cols=95  Identities=18%  Similarity=0.083  Sum_probs=87.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~  202 (223)
                      |..|...+++++|+.+|+++++.+|++   ..++.++|.++. ..+++++|+.+|++++.++|+++.++..+|.+++. .
T Consensus        35 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~  112 (148)
T 2dba_A           35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-L  112 (148)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-H
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-c
Confidence            455566799999999999999999998   899999996666 58999999999999999999999999999988887 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 027439          203 KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +++++|+.+|+++++++|++
T Consensus       113 ~~~~~A~~~~~~al~~~p~~  132 (148)
T 2dba_A          113 GRLDQAVLDLQRCVSLEPKN  132 (148)
T ss_dssp             TCHHHHHHHHHHHHHHCSSC
T ss_pred             CCHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999975

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.48  E-value=5.3e-13  Score=97.10  Aligned_cols=94  Identities=21%  Similarity=0.330  Sum_probs=87.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.++++++..+|+++.++..+|.+++. .++++
T Consensus        20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   97 (131)
T 2vyi_A           20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHV   97 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHH
Confidence            44556789999999999999999999999999997666 58999999999999999999999999999988888 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++.+|++
T Consensus        98 ~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           98 EAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHhcCccc
Confidence            9999999999999975

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.48  E-value=1.5e-13  Score=108.25  Aligned_cols=94  Identities=15%  Similarity=0.038  Sum_probs=85.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+...++++.|+..++++++++|.+..++..+|.++. .++++++|+++|+++++++|+++.++..+|.++.. .|+++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~  158 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRD  158 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHH
Confidence            34455679999999999999999999999999996666 68999999999999999999999999999988887 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|++|++++|++
T Consensus       159 ~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          159 EAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHhCCccC
Confidence            9999999999999864

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.47  E-value=4.6e-13  Score=99.17  Aligned_cols=94  Identities=13%  Similarity=0.070  Sum_probs=86.3

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQ  200 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~---~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~  200 (223)
                      ..+...+++++|+.+|+++++.+|+++   .++..+|.+++ ..+++++|+.+|++++..+|++   +.++..+|.+++.
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~   88 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence            445667899999999999999999998   79999997666 5899999999999999999999   8999999988887


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 027439          201 SHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       201 ~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                       .|++++|+.+|+++++..|++
T Consensus        89 -~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           89 -EGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             -TTCHHHHHHHHHHHHHHSTTS
T ss_pred             -cCCHHHHHHHHHHHHHHCCCC
Confidence             999999999999999999975

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.47  E-value=1.8e-13  Score=111.42  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=81.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD----------LLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gd----------yeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      +.+.|++|++.|+++++++|+++.+|+++|.++.. +++          +++|+..|++||+++|++..+++.+|.++..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            34678999999999999999999999999976664 555          4699999999999999999999999988877


Q ss_pred             Hc-----------CCHHHHHHHHHHHHHhCCCC
Q 027439          201 SH-----------KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       201 ~~-----------G~~eeAi~~fekAL~l~Pdn  222 (223)
                       +           +++++|+.+|++|++++|++
T Consensus        93 -lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           93 -FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             -HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             -hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence             5           48999999999999999986

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.46  E-value=2.3e-13  Score=112.13  Aligned_cols=95  Identities=15%  Similarity=0.065  Sum_probs=87.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH---  202 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~---  202 (223)
                      |..|...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .   
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~   89 (217)
T 2pl2_A           12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA-LYRQ   89 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hhhh
Confidence            345667789999999999999999999999999996666 68999999999999999999999999999988877 8   


Q ss_pred             --------CCHHHHHHHHHHHHHhCCCC
Q 027439          203 --------KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 --------G~~eeAi~~fekAL~l~Pdn  222 (223)
                              |++++|+..|+++++++|++
T Consensus        90 ~~~~~~~~g~~~~A~~~~~~al~~~P~~  117 (217)
T 2pl2_A           90 AEDRERGKGYLEQALSVLKDAERVNPRY  117 (217)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhcccccCHHHHHHHHHHHHHhCccc
Confidence                    99999999999999999986

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.46  E-value=7.7e-13  Score=101.07  Aligned_cols=95  Identities=15%  Similarity=0.045  Sum_probs=87.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+.+|+++++.+|.+..++.++|.++. ..+++++|+.+|++++.++|+++.++..+|.++.. .|++
T Consensus        20 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~   97 (166)
T 1a17_A           20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKF   97 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccH
Confidence            345566789999999999999999999999999996666 58999999999999999999999999999988877 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++++|++
T Consensus        98 ~~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           98 RAALRDYETVVKVKPHD  114 (166)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999975

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.45  E-value=3.3e-13  Score=132.21  Aligned_cols=95  Identities=21%  Similarity=0.246  Sum_probs=64.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...|++++|+++|+++++++|+++.++.++|.++. .+|++++|+++|++|++++|+++.++.++|.++.. +|++
T Consensus        16 G~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g~~   93 (723)
T 4gyw_A           16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQDV   93 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence            345556667777777777777777777777777775444 46777777777777777777777777777766555 6777


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|++|++++|++
T Consensus        94 ~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           94 QGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            77777777777776654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.45  E-value=1.4e-12  Score=94.14  Aligned_cols=95  Identities=24%  Similarity=0.399  Sum_probs=87.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +..|...+++++|+.+|+++++.+|.+..++..+|.++. ..+++++|+.+|++++..+|+++.++..++.+++. .+++
T Consensus        16 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~   93 (125)
T 1na0_A           16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDY   93 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCH
Confidence            345667789999999999999999999999999997666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus        94 ~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           94 DEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            99999999999999975

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.44  E-value=6.7e-13  Score=104.32  Aligned_cols=96  Identities=13%  Similarity=0.173  Sum_probs=84.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDL--LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdy--eeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G  203 (223)
                      |.+|...+++++|+.+|+++++++|.++.++.++|.+++...+++  ++|+.+|+++++.+|+++.++..+|.+++. .|
T Consensus        51 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g  129 (177)
T 2e2e_A           51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QA  129 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cc
Confidence            345666789999999999999999999999999997745467898  999999999999999999999999988887 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++++|+.+|+++++++|++
T Consensus       130 ~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          130 NYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             CHHHHHHHHHHHHHTCCTT
T ss_pred             cHHHHHHHHHHHHhhCCCC
Confidence            9999999999999998875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.43  E-value=5.8e-13  Score=130.41  Aligned_cols=95  Identities=21%  Similarity=0.183  Sum_probs=89.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...|++++|+++|+++++++|+++.++.++|.++. .++++++|+++|++|++++|+++.++..+|.++.. +|++
T Consensus        50 g~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~  127 (723)
T 4gyw_A           50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNI  127 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence            456777899999999999999999999999999997776 58999999999999999999999999999988887 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|++|++++|++
T Consensus       128 ~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A          128 PEAIASYRTALKLKPDF  144 (723)
T ss_dssp             HHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999986

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.43  E-value=9.5e-13  Score=105.89  Aligned_cols=95  Identities=15%  Similarity=0.072  Sum_probs=86.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNP----------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN  189 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~----------------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~  189 (223)
                      |..|...++|++|+.+|++++++.|.++                .++.++|.++. ..+++++|+.+|++++.++|+++.
T Consensus        45 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~  123 (198)
T 2fbn_A           45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVK  123 (198)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHH
Confidence            3455567899999999999999999987                89999997666 589999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +++.+|.+++. .|++++|+.+|+++++++|++
T Consensus       124 ~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          124 ALYKLGVANMY-FGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCc
Confidence            99999988887 999999999999999999975

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.42  E-value=6.8e-13  Score=108.56  Aligned_cols=97  Identities=14%  Similarity=0.230  Sum_probs=85.7

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---  201 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~---  201 (223)
                      -|.+|...+++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.+++..   
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            3566778899999999999999999999999999997666 589999999999999999999999999998775431   


Q ss_pred             -------------------------------cCCHHHHHHHHHHHHHhCCCC
Q 027439          202 -------------------------------HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       202 -------------------------------~G~~eeAi~~fekAL~l~Pdn  222 (223)
                                                     .+++++|+.+|++|++++|++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence                                           246889999999999999963

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.42  E-value=1e-12  Score=116.07  Aligned_cols=94  Identities=18%  Similarity=0.139  Sum_probs=86.3

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL  191 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n---------------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l  191 (223)
                      ..|...+++++|+.+|+++++++|.+               ..++.++|.++. .+++|++|+.+|++|++++|+++.++
T Consensus       155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~  233 (336)
T 1p5q_A          155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGL  233 (336)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            34445599999999999999999999               699999996666 68999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          192 SMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       192 ~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.+|.+++. .|++++|+.+|+++++++|++
T Consensus       234 ~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          234 SRRGEAHLA-VNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHHHCCCC
Confidence            999988888 999999999999999999986

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.41  E-value=1.5e-12  Score=106.18  Aligned_cols=95  Identities=15%  Similarity=0.099  Sum_probs=87.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADP-RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP-~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      |..|...+++++|+.+|+++++++| .+..++.++|.++. ..+++++|+.+|+++++.+|+++.++..+|.++.. .|+
T Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~   91 (228)
T 4i17_A           14 GNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKN   91 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-ccc
Confidence            4456678999999999999999999 99999999996666 68999999999999999999999999999988888 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      +++|+..|+++++++|++
T Consensus        92 ~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           92 NQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHCCCc
Confidence            999999999999999986

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.40  E-value=1.3e-12  Score=107.57  Aligned_cols=91  Identities=15%  Similarity=-0.018  Sum_probs=61.5

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-----------GDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~-----------gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      .+|...+++++|+.+|+++++++|+++.++.++|.++. .+           |++++|+..|+++++++|+++.++..+|
T Consensus        47 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg  125 (217)
T 2pl2_A           47 RTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRG  125 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            34445567777777777777777777777777775444 45           6777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          196 DLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       196 ~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      .++.. .|++++|+..|+++++++
T Consensus       126 ~~~~~-~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          126 LVYAL-LGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHH-cCChHHHHHHHHHHHhcc
Confidence            66555 677777777777766665

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.40  E-value=1.6e-12  Score=94.82  Aligned_cols=94  Identities=18%  Similarity=0.309  Sum_probs=85.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSMYGDLI  198 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d-------~~~l~~lA~ll  198 (223)
                      |..|...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|+.+|++++..+|++       +.++..+|.++
T Consensus        11 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~   89 (131)
T 1elr_A           11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence            345667789999999999999999999999999997666 5899999999999999999887       99999999888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Q 027439          199 WQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       199 ~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +. .|++++|+.+|+++++..|+
T Consensus        90 ~~-~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           90 FK-EEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHCCC
T ss_pred             HH-hccHHHHHHHHHHHHHhCCC
Confidence            87 99999999999999999884

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.40  E-value=2.6e-12  Score=101.13  Aligned_cols=94  Identities=15%  Similarity=0.159  Sum_probs=60.6

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...|++++|+.+|+++++++|+++.++.++|.++. ..+++++|+..+++++..+|+++.++..++.++.. .+++
T Consensus        12 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   89 (184)
T 3vtx_A           12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM-IDEK   89 (184)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-cCCH
Confidence            456677789999999999999999999999888886654 46666666666665555555555555444444333 4444


Q ss_pred             HHHHHHHHHHHHhCCC
Q 027439          206 SRAESYFDQAVKAAPD  221 (223)
Q Consensus       206 eeAi~~fekAL~l~Pd  221 (223)
                      +.|+..+++++.++|+
T Consensus        90 ~~a~~~~~~a~~~~~~  105 (184)
T 3vtx_A           90 QAAIDALQRAIALNTV  105 (184)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            4444444444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.38  E-value=1.1e-12  Score=112.65  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=87.6

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+.+|+++++.+|+++.++.++|.++. .++++++|+..|++|++++|++..++..+|.++.. .|++
T Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~   88 (281)
T 2c2l_A           11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESY   88 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence            345667889999999999999999999999999996666 68999999999999999999999999999988887 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++++|++
T Consensus        89 ~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           89 DEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            99999999999998864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.37  E-value=2.9e-12  Score=94.41  Aligned_cols=84  Identities=14%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (223)
Q Consensus       136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA  215 (223)
                      ++|+.+|+++++.+|+++.++.++|.++. ..+++++|+.+|++++.++|++..++..+|.++.. .|++++|+.+|+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            46899999999999999999999996666 58999999999999999999999999999988887 99999999999999


Q ss_pred             HHhCCC
Q 027439          216 VKAAPD  221 (223)
Q Consensus       216 L~l~Pd  221 (223)
                      ++++|+
T Consensus        80 l~~~~~   85 (115)
T 2kat_A           80 LAAAQS   85 (115)
T ss_dssp             HHHHHH
T ss_pred             HHhccc
Confidence            998763

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.37  E-value=1.7e-12  Score=117.89  Aligned_cols=94  Identities=13%  Similarity=0.096  Sum_probs=82.3

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD-LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gd-yeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      .+|...+++++|+++|+++++++|++..+|.++|.++. .+++ +++|+.+|++|++++|++..+|..+|.++.. .|++
T Consensus       105 ~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~  182 (382)
T 2h6f_A          105 AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDP  182 (382)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCC
T ss_pred             HHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCH
Confidence            34455678999999999999999999999999996666 5786 9999999999999999999999999988777 8999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|++|++++|+|
T Consensus       183 ~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          183 SQELEFIADILNQDAKN  199 (382)
T ss_dssp             TTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCccC
Confidence            99999999999999986

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.37  E-value=4.6e-12  Score=104.12  Aligned_cols=94  Identities=12%  Similarity=0.094  Sum_probs=86.3

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      .+|...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|+.+|+++++++|+++.++..+|.+++. .|+++
T Consensus        51 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~  128 (275)
T 1xnf_A           51 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDK  128 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHH
Confidence            45566789999999999999999999999999997666 58999999999999999999999999999988888 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++++|++
T Consensus       129 ~A~~~~~~a~~~~~~~  144 (275)
T 1xnf_A          129 LAQDDLLAFYQDDPND  144 (275)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.37  E-value=6e-12  Score=116.78  Aligned_cols=96  Identities=15%  Similarity=0.035  Sum_probs=89.7

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -|..|...+++++|+++|+++++++|+++.++.++|.++. .++++++|+++|++|++++|+++.++..+|.++.. +|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC
Confidence            4567788899999999999999999999999999997666 58999999999999999999999999999988887 999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      +++|+.+|+++++++|++
T Consensus        90 ~~eA~~~~~~al~~~p~~  107 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHD  107 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999999999976

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.36  E-value=3.8e-12  Score=101.97  Aligned_cols=95  Identities=11%  Similarity=0.040  Sum_probs=85.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----------------H
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----------------N  189 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~----------------~  189 (223)
                      |.+|...+++++|+.+|+++++++|.++.++.++|.++. ..+++++|+.+|++++++.|++.                .
T Consensus        44 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  122 (213)
T 1hh8_A           44 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE  122 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchH
Confidence            455667889999999999999999999999999997666 58999999999999999888877                9


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++..+|.+++. .|++++|+.+|+++++++|++
T Consensus       123 ~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          123 VLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccc
Confidence            99999988887 999999999999999998864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.36  E-value=2.3e-12  Score=118.56  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=85.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---------------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~  190 (223)
                      |..|...++|++|+.+|+++++++|.+               ..++.++|.++. .+++|++|+.+|++|++++|+++.+
T Consensus       275 G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a  353 (457)
T 1kt0_A          275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKG  353 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHH
Confidence            344556799999999999999999999               799999996666 6999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       191 l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++.+|.+++. ++++++|+.+|++|++++|++
T Consensus       354 ~~~~g~a~~~-~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          354 LYRRGEAQLL-MNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            9999988888 999999999999999999976

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.36  E-value=1.2e-12  Score=118.93  Aligned_cols=94  Identities=14%  Similarity=0.075  Sum_probs=86.3

Q ss_pred             ccccCCCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          127 SWDPNNHG-NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       127 ~~Y~~~gd-~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      .+|...++ +++|+.+|+++++++|++..+|.++|.++. .++++++|+.+|++||+++|++..+|..+|.++.. .|++
T Consensus       139 ~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~  216 (382)
T 2h6f_A          139 VLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLW  216 (382)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCC
T ss_pred             HHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCCh
Confidence            44455675 999999999999999999999999996666 58999999999999999999999999999988887 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++++|++
T Consensus       217 ~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          217 DNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             TTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999986

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.36  E-value=2.3e-12  Score=104.94  Aligned_cols=94  Identities=12%  Similarity=0.075  Sum_probs=86.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-------NVLSMYGDLI  198 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~-------~~l~~lA~ll  198 (223)
                      |.+|...+++++|+.+|+++++.+|+++.++.++|.++. .++++++|+.+|+++++++|+++       .++..+|.++
T Consensus        49 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  127 (228)
T 4i17_A           49 GVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF  127 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence            456677889999999999999999999999999997666 58999999999999999999999       6689999887


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Q 027439          199 WQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       199 ~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +. .|++++|+.+|+++++++|+
T Consensus       128 ~~-~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          128 QQ-AGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HH-TTCHHHHHHHHHHHTTSSCH
T ss_pred             HH-hccHHHHHHHHHHHHhcCCC
Confidence            77 99999999999999999986

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.33  E-value=1.1e-11  Score=89.86  Aligned_cols=91  Identities=23%  Similarity=0.372  Sum_probs=60.6

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      |...+++++|+.+|+++++.+|.+..++.++|.++. ..+++++|+.++++++..+|++..++..++.+++. .|++++|
T Consensus        45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A  122 (136)
T 2fo7_A           45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEA  122 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHH
Confidence            334456677777777777777776666666664444 46677777777777777777666666666666555 6777777


Q ss_pred             HHHHHHHHHhCCC
Q 027439          209 ESYFDQAVKAAPD  221 (223)
Q Consensus       209 i~~fekAL~l~Pd  221 (223)
                      +.+|++++..+|+
T Consensus       123 ~~~~~~~~~~~~~  135 (136)
T 2fo7_A          123 IEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHSTT
T ss_pred             HHHHHHHHccCCC
Confidence            7777777766665

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.33  E-value=2.1e-12  Score=102.77  Aligned_cols=87  Identities=9%  Similarity=0.056  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027439          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ  214 (223)
Q Consensus       135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fek  214 (223)
                      +-.+...|+++++++|+++.++.++|..++ ..|+|++|+.+|++++.++|+++.+|..+|.+++. .|++++|+..|++
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAV   95 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHHH
Confidence            334445577788899999999999997666 58999999999999999999999999999988887 9999999999999


Q ss_pred             HHHhCCCCC
Q 027439          215 AVKAAPDDW  223 (223)
Q Consensus       215 AL~l~Pdn~  223 (223)
                      +++++|++.
T Consensus        96 al~l~P~~~  104 (151)
T 3gyz_A           96 AFALGKNDY  104 (151)
T ss_dssp             HHHHSSSCC
T ss_pred             HHhhCCCCc
Confidence            999999874

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=9e-12  Score=100.95  Aligned_cols=92  Identities=21%  Similarity=0.094  Sum_probs=84.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|+.+|+++++.+|+++.++..+|.++.. .|++
T Consensus       146 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~  223 (258)
T 3uq3_A          146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEY  223 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-HhhH
Confidence            345666789999999999999999999999999996666 58999999999999999999999999999988887 9999


Q ss_pred             HHHHHHHHHHHHhC
Q 027439          206 SRAESYFDQAVKAA  219 (223)
Q Consensus       206 eeAi~~fekAL~l~  219 (223)
                      ++|+.+|+++++++
T Consensus       224 ~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          224 ASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999998

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.32  E-value=3.6e-12  Score=114.78  Aligned_cols=95  Identities=18%  Similarity=0.154  Sum_probs=87.0

Q ss_pred             cccccCCCChHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQ----------------ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN  189 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLe----------------ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~  189 (223)
                      |..|...++|++|+.+|+++++                .+|.+..++.++|.+++ .+++|++|+.+|++|++++|+++.
T Consensus       230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~  308 (370)
T 1ihg_A          230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTK  308 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHH
Confidence            3445567999999999999999                88889999999997666 689999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +++.+|.+++. .+++++|+.+|++|++++|++
T Consensus       309 a~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~  340 (370)
T 1ihg_A          309 ALYRRAQGWQG-LKEYDQALADLKKAQEIAPED  340 (370)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            99999988888 999999999999999999976

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.31  E-value=1.9e-11  Score=88.51  Aligned_cols=94  Identities=22%  Similarity=0.352  Sum_probs=85.7

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...+++++|+.+|+++++.+|.+..++..++.++. ..+++++|+.++++++..+|++..++..++.++.. .|+++
T Consensus         9 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~   86 (136)
T 2fo7_A            9 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYD   86 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHH
Confidence            34556689999999999999999999999999997666 58999999999999999999999999999988777 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|++++...|++
T Consensus        87 ~A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           87 EAIEYYQKALELDPRS  102 (136)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999998864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.31  E-value=2.9e-11  Score=92.68  Aligned_cols=93  Identities=12%  Similarity=-0.001  Sum_probs=64.4

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      +|...+++++|+.+|+++++.+|.+..++.++|.++. ..+++++|+.++++++..+|+++.++..+|.+++. .|++++
T Consensus        51 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~  128 (186)
T 3as5_A           51 AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGRFDE  128 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHH
Confidence            4445567777777777777777777777777775554 46777777777777777777777777777766665 777777


Q ss_pred             HHHHHHHHHHhCCCC
Q 027439          208 AESYFDQAVKAAPDD  222 (223)
Q Consensus       208 Ai~~fekAL~l~Pdn  222 (223)
                      |+.+|+++++.+|++
T Consensus       129 A~~~~~~~~~~~~~~  143 (186)
T 3as5_A          129 AIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhcCccc
Confidence            777777777766653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.30  E-value=1.3e-11  Score=94.62  Aligned_cols=95  Identities=18%  Similarity=0.062  Sum_probs=87.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +.+|...+++++|+.+|+++++.+|.+..++..+|.++. ..+++++|+.++++++..+|+++.++..+|.+++. .|++
T Consensus        83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~  160 (186)
T 3as5_A           83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD-NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-MGRH  160 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH-HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCH
Confidence            345566789999999999999999999999999997666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus       161 ~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          161 EEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcCCCc
Confidence            99999999999998875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.30  E-value=3.5e-12  Score=99.74  Aligned_cols=84  Identities=8%  Similarity=-0.087  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439          138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK  217 (223)
Q Consensus       138 A~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~  217 (223)
                      +...|+++++++|++..++.++|..++ ..++|++|+.+|++++.++|+++.++..+|.++.. .|++++|+.+|++++.
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence            346789999999999999999997777 58999999999999999999999999999988887 9999999999999999


Q ss_pred             hCCCCC
Q 027439          218 AAPDDW  223 (223)
Q Consensus       218 l~Pdn~  223 (223)
                      ++|++.
T Consensus        84 l~p~~~   89 (148)
T 2vgx_A           84 MDIXEP   89 (148)
T ss_dssp             HSTTCT
T ss_pred             cCCCCc
Confidence            999873

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.30  E-value=3.4e-12  Score=112.90  Aligned_cols=95  Identities=19%  Similarity=0.065  Sum_probs=82.6

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNP-----------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG  188 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~-----------------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~  188 (223)
                      |..|...++|++|+.+|+++++++|++.                 .++.++|.++. .+++|++|+.+|+++++++|++.
T Consensus       186 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~  264 (338)
T 2if4_A          186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNP  264 (338)
T ss_dssp             HHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH
Confidence            4556677999999999999999999987                 38999996666 68999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+++.+|.+++. .|++++|+.+|+++++++|++
T Consensus       265 ~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~  297 (338)
T 2if4_A          265 KALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDD  297 (338)
T ss_dssp             HHHHHHHHHHHT-TTCHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence            999999988877 999999999999999999876

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.29  E-value=1.3e-11  Score=96.88  Aligned_cols=93  Identities=10%  Similarity=0.172  Sum_probs=80.8

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--H
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA--S  206 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~--e  206 (223)
                      +...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.+|++++.++|+++.++..+|.+++...+++  +
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            455689999999999999999999999999997666 5899999999999999999999999999998834338998  9


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++.+|++
T Consensus        99 ~A~~~~~~al~~~p~~  114 (177)
T 2e2e_A           99 QTRAMIDKALALDSNE  114 (177)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCCc
Confidence            9999999999999976

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.28  E-value=3.2e-11  Score=104.27  Aligned_cols=95  Identities=13%  Similarity=0.186  Sum_probs=77.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~--n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G  203 (223)
                      +.+|...+++++|+.+|+++++++|.  ++.++.++|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .|
T Consensus       184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g  261 (365)
T 4eqf_A          184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GD  261 (365)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Confidence            45667778889999999999999988  8888888886665 57899999999999999999888888888877777 88


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++++|+.+|+++++++|++
T Consensus       262 ~~~~A~~~~~~al~~~p~~  280 (365)
T 4eqf_A          262 RSEEAVEAYTRALEIQPGF  280 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHhcCCCc
Confidence            9999999999998888875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.27  E-value=1.1e-11  Score=107.12  Aligned_cols=95  Identities=16%  Similarity=0.014  Sum_probs=87.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .|++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~  297 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA-NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN-LGAY  297 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-CCCH
Confidence            456667799999999999999999999999999997666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++++|++
T Consensus       298 ~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          298 REAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            99999999999998763

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.27  E-value=2.6e-11  Score=97.84  Aligned_cols=92  Identities=15%  Similarity=0.138  Sum_probs=47.7

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      |...+++++|+.+|+++++.+|.+..++..+|.++. ..+++++|+.+|++++..+|+++.++..++.++.. .|++++|
T Consensus       135 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A  212 (243)
T 2q7f_A          135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA-NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY-KENREKA  212 (243)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCTTHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-ccCHHHH
Confidence            334445555555555555555555555555553333 34555555555555555555555555555544444 5555555


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      +.+|+++++++|++
T Consensus       213 ~~~~~~~~~~~p~~  226 (243)
T 2q7f_A          213 LEMLDKAIDIQPDH  226 (243)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHccCcch
Confidence            55555555555543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.26  E-value=1.8e-11  Score=93.29  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=70.1

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          144 KMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       144 ~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++..+||+.+..+.++|..++ ++|+|++|+.+|++|++++|+++.++..+|.+++. .|++++|+..|+++++++|++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhh
Confidence            455689999999999998777 58999999999999999999999999999988888 999999999999999999986

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.26  E-value=6e-11  Score=95.67  Aligned_cols=95  Identities=14%  Similarity=0.226  Sum_probs=75.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +.+|...+++++|+.+|+++++.+|.+..++..+|.++. ..+++++|+.+|+++++.+|+++.++..+|.++.. .|++
T Consensus        64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~  141 (243)
T 2q7f_A           64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQP  141 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccH
Confidence            344556678888888888888888888888888885555 57888888888888888888888888888877766 8888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus       142 ~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A          142 KLALPYLQRAVELNEND  158 (243)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            88888888888887764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.25  E-value=2.7e-11  Score=103.87  Aligned_cols=93  Identities=13%  Similarity=0.023  Sum_probs=53.7

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      .+|...+++++|+.+|+++++++|.++.++.++|.++. ..+++++|+.+|++++.++|+++.++..+|.++.. .|+++
T Consensus       225 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~  302 (368)
T 1fch_A          225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHR  302 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHH
Confidence            34444555666666666666666666666666664443 35666666666666666666666666666655555 56666


Q ss_pred             HHHHHHHHHHHhCCC
Q 027439          207 RAESYFDQAVKAAPD  221 (223)
Q Consensus       207 eAi~~fekAL~l~Pd  221 (223)
                      +|+.+|+++++++|+
T Consensus       303 ~A~~~~~~al~~~~~  317 (368)
T 1fch_A          303 EAVEHFLEALNMQRK  317 (368)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCC
Confidence            666666666655544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.25  E-value=3.4e-11  Score=104.19  Aligned_cols=89  Identities=18%  Similarity=0.108  Sum_probs=78.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR-AES  210 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee-Ai~  210 (223)
                      .+++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|+++++++|+++.++.+++.++.. .|++++ |..
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~-~g~~~eaa~~  256 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH-LGKPPEVTNR  256 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCHHHHHH
Confidence            458999999999999999999999999995555 68999999999999999999999999999977777 888865 578


Q ss_pred             HHHHHHHhCCCC
Q 027439          211 YFDQAVKAAPDD  222 (223)
Q Consensus       211 ~fekAL~l~Pdn  222 (223)
                      +++++++++|++
T Consensus       257 ~~~~~~~~~P~~  268 (291)
T 3mkr_A          257 YLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHHCTTC
T ss_pred             HHHHHHHhCCCC
Confidence            999999999986

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.25  E-value=3.1e-11  Score=112.37  Aligned_cols=94  Identities=13%  Similarity=0.160  Sum_probs=73.6

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...+++++|+++|+++++++|++..++.++|.++. .++++++|+++|+++++++|+++.++..+|.++.. .|+++
T Consensus        31 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~  108 (568)
T 2vsy_A           31 DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AGQAE  108 (568)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHH
Confidence            34455678888888888888888888888888886555 47888888888888888888888888888877666 88888


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++++|++
T Consensus       109 ~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A          109 AAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            8888888888887765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.24  E-value=5.8e-11  Score=101.81  Aligned_cols=95  Identities=13%  Similarity=0.100  Sum_probs=88.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .|++
T Consensus        71 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~  148 (368)
T 1fch_A           71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQ  148 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCH
Confidence            456667899999999999999999999999999997666 58999999999999999999999999999988887 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus       149 ~~A~~~~~~~~~~~~~~  165 (368)
T 1fch_A          149 RQACEILRDWLRYTPAY  165 (368)
T ss_dssp             HHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHHhCcCc
Confidence            99999999999999875

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.24  E-value=2.4e-11  Score=100.09  Aligned_cols=96  Identities=17%  Similarity=0.265  Sum_probs=86.4

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -|.+|...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|+.+|+++++++|+++.++..+|..++. .++
T Consensus        80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~  157 (272)
T 3u4t_A           80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKE  157 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHH
Confidence            3566777899999999999999999999999999997666 58999999999999999999999999999955666 679


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 027439          205 ASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn  222 (223)
                      +++|+.+|+++++.+|++
T Consensus       158 ~~~A~~~~~~a~~~~p~~  175 (272)
T 3u4t_A          158 YVKADSSFVKVLELKPNI  175 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhCccc
Confidence            999999999999999975

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.23  E-value=2.2e-11  Score=112.17  Aligned_cols=88  Identities=13%  Similarity=-0.091  Sum_probs=83.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--------GDLLKAEEYCARAILMSP---NDGNVLSMYGDLIWQS  201 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~--------gdyeeA~~~~ekAL~ldP---~d~~~l~~lA~ll~~~  201 (223)
                      +++++|+.+|+++++++|+++.+|.++|.++. ..        +++++|+.+|++|++++|   +++.++..+|.+++. 
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-  270 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-  270 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-
Confidence            89999999999999999999999999997666 57        899999999999999999   999999999988888 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 027439          202 HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .|++++|+.+|+++++++|++
T Consensus       271 ~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          271 EESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999986

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.22  E-value=2.2e-11  Score=93.40  Aligned_cols=82  Identities=7%  Similarity=-0.110  Sum_probs=73.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       140 ~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      ..|+++++++|++...+..+|..++ ..+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|++++.++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence            5788999999999999999997666 58999999999999999999999999999988887 999999999999999999


Q ss_pred             CCCC
Q 027439          220 PDDW  223 (223)
Q Consensus       220 Pdn~  223 (223)
                      |++.
T Consensus        83 p~~~   86 (142)
T 2xcb_A           83 INEP   86 (142)
T ss_dssp             TTCT
T ss_pred             CCCc
Confidence            9873

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.22  E-value=5.1e-11  Score=96.45  Aligned_cols=95  Identities=17%  Similarity=0.112  Sum_probs=84.2

Q ss_pred             cccccCCCChHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQ--------------------------ADPRNPLLLSNYARFLKEARGDLLKAEEYCAR  179 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLe--------------------------ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ek  179 (223)
                      |.+|...+++++|+.+|+++++                          .+|.++.++.++|.++. ..+++++|+.+|++
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~  164 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNAVKAYTE  164 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence            3455667788888888888888                          77788899999997666 58999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          180 AILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       180 AL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++..+|+++.++..+|.+++. .|++++|+.+|+++++.+|++
T Consensus       165 a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~  206 (258)
T 3uq3_A          165 MIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNF  206 (258)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHH
Confidence            999999999999999988887 999999999999999999875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.22  E-value=3.6e-11  Score=110.79  Aligned_cols=94  Identities=14%  Similarity=0.094  Sum_probs=86.3

Q ss_pred             cccccCCCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--
Q 027439          126 GSWDPNNHGN-NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH--  202 (223)
Q Consensus       126 g~~Y~~~gd~-~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~--  202 (223)
                      |..|...+++ ++|+.+|+++++++|+++.++.++|.++. .++++++|+.+|++|++++|+ ..++..+|.++.. .  
T Consensus       109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~-~~~  185 (474)
T 4abn_A          109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ-LQT  185 (474)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT-CCC
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH-hcc
Confidence            3556667899 99999999999999999999999997666 589999999999999999998 7999999988777 8  


Q ss_pred             -------CCHHHHHHHHHHHHHhCCCC
Q 027439          203 -------KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 -------G~~eeAi~~fekAL~l~Pdn  222 (223)
                             |++++|+.+|+++++++|++
T Consensus       186 ~~~~~~~g~~~~A~~~~~~al~~~p~~  212 (474)
T 4abn_A          186 DSGDEHSRHVMDSVRQAKLAVQMDVLD  212 (474)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence                   99999999999999999986

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.21  E-value=9.1e-11  Score=102.39  Aligned_cols=93  Identities=15%  Similarity=0.191  Sum_probs=58.1

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      +|...+++++|+..|+++++++|+++.++.++|.++. ..+++++|+.+|+++++++|+++.++..++.++.. .|++++
T Consensus       212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~  289 (388)
T 1w3b_A          212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE-KGSVAE  289 (388)
T ss_dssp             HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH-HSCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHH
Confidence            3444556666666666666666666666666664444 35666666666666666666666666666655555 666666


Q ss_pred             HHHHHHHHHHhCCCC
Q 027439          208 AESYFDQAVKAAPDD  222 (223)
Q Consensus       208 Ai~~fekAL~l~Pdn  222 (223)
                      |+.+|+++++.+|++
T Consensus       290 A~~~~~~al~~~p~~  304 (388)
T 1w3b_A          290 AEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhhCccc
Confidence            666666666666653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.20  E-value=6.9e-11  Score=94.54  Aligned_cols=91  Identities=13%  Similarity=0.087  Sum_probs=81.6

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...+++++|+.+|++++  +| ++.++.++|.++. ..+++++|+.+|++++.++|+++.++..+|.+++. .|+++
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~   88 (213)
T 1hh8_A           14 VLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYD   88 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHH
Confidence            44566789999999999985  44 7899999996666 58999999999999999999999999999988888 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|++++++.|++
T Consensus        89 ~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHhCCCc
Confidence            9999999999988864

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.20  E-value=8.4e-11  Score=99.24  Aligned_cols=93  Identities=17%  Similarity=0.152  Sum_probs=86.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.+|++++.++|++..++..+|.+++. .|++
T Consensus        10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~   87 (359)
T 3ieg_A           10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKL   87 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCCh
Confidence            345667789999999999999999999999999997666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCC
Q 027439          206 SRAESYFDQAVKAAP  220 (223)
Q Consensus       206 eeAi~~fekAL~l~P  220 (223)
                      ++|+..|+++++.+|
T Consensus        88 ~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           88 DEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999999988

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.19  E-value=7.2e-11  Score=103.07  Aligned_cols=95  Identities=18%  Similarity=0.249  Sum_probs=79.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +.+|...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|+++++++|+++.++..++.++.. .|++
T Consensus       244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~  321 (388)
T 1w3b_A          244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNI  321 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCH
Confidence            345566788899999999999999999888888886655 57889999998998888888888888888877666 8888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus       322 ~~A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          322 EEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             HHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHhcCCCc
Confidence            88888888888888764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.19  E-value=1.7e-10  Score=94.13  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=67.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +.+|...+++++|+.+|+++++.+|.+..++..+|.++. ..+++++|+.+|+++++.+|++..++..++.++.. .|++
T Consensus       148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~  225 (252)
T 2ho1_A          148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY-KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV-FEDR  225 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-ccCH
Confidence            344555667777777777777777777777777775555 46777777777777777777777777777766555 7777


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus       226 ~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          226 DTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHCCCC
Confidence            77777777777777764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.19  E-value=1.3e-10  Score=97.32  Aligned_cols=89  Identities=12%  Similarity=0.079  Sum_probs=42.6

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      ..+++++|+.+|+++++.+|+++.++.++|.++. ..+++++|+.+|+++++.+|+++.++..+|.++.. .|++++|+.
T Consensus       184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~  261 (327)
T 3cv0_A          184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN-MSQYDLAAK  261 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hccHHHHHH
Confidence            3344444555555544444444444444443333 24455555555555555555444444444444444 455555555


Q ss_pred             HHHHHHHhCCC
Q 027439          211 YFDQAVKAAPD  221 (223)
Q Consensus       211 ~fekAL~l~Pd  221 (223)
                      +|+++++.+|+
T Consensus       262 ~~~~a~~~~~~  272 (327)
T 3cv0_A          262 QLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHhCCc
Confidence            55555444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.19  E-value=6e-12  Score=90.45  Aligned_cols=88  Identities=17%  Similarity=0.130  Sum_probs=75.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGDLIW  199 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~lA~ll~  199 (223)
                      |..|...+++++|+.+|+++++++|.++.++.++|.++. ..+++++|+.+|+++++++|++      ..++..++.++.
T Consensus        11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~   89 (111)
T 2l6j_A           11 GNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG   89 (111)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            345667889999999999999999999999999997666 5899999999999999999999      888888887776


Q ss_pred             HHcCCHHHHHHHHHHH
Q 027439          200 QSHKDASRAESYFDQA  215 (223)
Q Consensus       200 ~~~G~~eeAi~~fekA  215 (223)
                      . .|++++|+..|+++
T Consensus        90 ~-~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           90 A-VGSVQIPVVEVDEL  104 (111)
T ss_dssp             H-HHCCCCCSSSSSSC
T ss_pred             H-HHhHhhhHhHHHHh
Confidence            6 77777777666543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.19  E-value=7.6e-11  Score=101.33  Aligned_cols=94  Identities=12%  Similarity=-0.036  Sum_probs=81.6

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHH-------------------------------
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEE-------------------------------  175 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~-------------------------------  175 (223)
                      ..+...|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.                               
T Consensus       125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~  203 (287)
T 3qou_A          125 MQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP  203 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence            33455789999999999999999999999999997666 5788877654                               


Q ss_pred             ---HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          176 ---YCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       176 ---~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                         .|++++..+|+++.+++.+|.++.. .|++++|+..|+++++.+|++
T Consensus       204 a~~~l~~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          204 EIQQLQQQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTG
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhccccc
Confidence               4566688899999999999988887 999999999999999999975

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.19  E-value=1.2e-10  Score=95.05  Aligned_cols=95  Identities=22%  Similarity=0.317  Sum_probs=76.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL--MSPNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~--ldP~d~~~l~~lA~ll~~~~G  203 (223)
                      +.+|...+++++|+.+|+++++.+|.+..++.++|.++. ..+++++|+++|++++.  .+|.+..++..+|.+++. .|
T Consensus        78 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g  155 (252)
T 2ho1_A           78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MK  155 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cC
Confidence            345556678888888888888888888888888886555 57888888888888888  778888888888877777 88


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++++|+.+|+++++.+|++
T Consensus       156 ~~~~A~~~~~~~~~~~~~~  174 (252)
T 2ho1_A          156 KPAQAKEYFEKSLRLNRNQ  174 (252)
T ss_dssp             CHHHHHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHHHHhcCccc
Confidence            8888888888888888764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.19  E-value=1.8e-10  Score=96.42  Aligned_cols=94  Identities=13%  Similarity=-0.018  Sum_probs=86.6

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.+++++++.+|++..++..+|.++.. .|+++
T Consensus        29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~  106 (327)
T 3cv0_A           29 LSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNAN  106 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH-cCCHH
Confidence            34556789999999999999999999999999997666 58999999999999999999999999999988877 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++.+|++
T Consensus       107 ~A~~~~~~~~~~~~~~  122 (327)
T 3cv0_A          107 AALASLRAWLLSQPQY  122 (327)
T ss_dssp             HHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            9999999999998875

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.19  E-value=8.3e-11  Score=96.56  Aligned_cols=93  Identities=15%  Similarity=0.128  Sum_probs=83.9

Q ss_pred             cccCCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439          128 WDPNNHGNNSTDLYYQKMIQA----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLel----dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G  203 (223)
                      .+...+++++|+.+|+++++.    +|.++.++..+|.++. ..+++++|+.+|++++.++|+++.++..+|.+++. .|
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~   91 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AG   91 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TT
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cc
Confidence            345568999999999999998    3567889999997666 58999999999999999999999999999988887 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++++|+.+|+++++++|++
T Consensus        92 ~~~~A~~~~~~al~~~~~~  110 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTY  110 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHhcCccc
Confidence            9999999999999999975

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.18  E-value=1.4e-10  Score=91.90  Aligned_cols=86  Identities=19%  Similarity=0.254  Sum_probs=33.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-GDLLKAEEYCARAIL--MSPNDGNVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~-gdyeeA~~~~ekAL~--ldP~d~~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      +++++|+.+|+++++.+|.+..++.++|.++. .. +++++|+.+++++++  .+|++..++..+|.++.. .|++++|+
T Consensus        56 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~  133 (225)
T 2vq2_A           56 KVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QGQFGLAE  133 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cCCHHHHH
Confidence            33444444444444444444444434442222 23 344444444444443  223333333333333333 34444444


Q ss_pred             HHHHHHHHhCC
Q 027439          210 SYFDQAVKAAP  220 (223)
Q Consensus       210 ~~fekAL~l~P  220 (223)
                      .+|+++++.+|
T Consensus       134 ~~~~~~~~~~~  144 (225)
T 2vq2_A          134 AYLKRSLAAQP  144 (225)
T ss_dssp             HHHHHHHHHST
T ss_pred             HHHHHHHHhCC
Confidence            44444443333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.18  E-value=1.5e-11  Score=87.78  Aligned_cols=86  Identities=13%  Similarity=0.104  Sum_probs=74.7

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPL-LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~-~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      ..|...+++++|+.+|+++++.+|+++. ++.++|.++. ..+++++|+.+|+++++++|++..++..         +.+
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~---------~~~   77 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR---------KMV   77 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH---------HHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH---------HHH
Confidence            3455678999999999999999999999 9999997666 5899999999999999999999987633         447


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      .+|+..|++++..+|++
T Consensus        78 ~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           78 MDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHhccCccc
Confidence            78899999998888765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.17  E-value=1.7e-10  Score=91.48  Aligned_cols=93  Identities=15%  Similarity=0.153  Sum_probs=73.5

Q ss_pred             cccccCC-CChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027439          126 GSWDPNN-HGNNSTDLYYQKMIQ--ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH  202 (223)
Q Consensus       126 g~~Y~~~-gd~~eA~~~y~~aLe--ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~  202 (223)
                      +.+|... +++++|+.+|+++++  .+|.+..++.++|.++. ..+++++|+.+|+++++.+|+++.++..++.+++. .
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~  160 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA-KQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML-A  160 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-H
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-c
Confidence            3455566 788888888888888  66666788888886555 57888888888888888888888888888877777 8


Q ss_pred             CCHHHHHHHHHHHHHhCC
Q 027439          203 KDASRAESYFDQAVKAAP  220 (223)
Q Consensus       203 G~~eeAi~~fekAL~l~P  220 (223)
                      |++++|+.+|+++++.+|
T Consensus       161 ~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          161 GQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             TCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhCC
Confidence            888888888888888777

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.17  E-value=1.3e-10  Score=102.54  Aligned_cols=95  Identities=17%  Similarity=0.158  Sum_probs=87.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.+|+++++.+|++..++..+|.++.. .|++
T Consensus        33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~  110 (450)
T 2y4t_A           33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QGKL  110 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCH
Confidence            344566789999999999999999999999999997666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus       111 ~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A          111 DEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HHHHHHHHHHHTSCCCH
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999999999998864

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.17  E-value=1.8e-10  Score=107.11  Aligned_cols=95  Identities=14%  Similarity=0.110  Sum_probs=88.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH---  202 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~---  202 (223)
                      |.+|...+++++|+++|+++++++|+++.++.++|.++. .++++++|+++|+++++++|+++.++..++.++.. .   
T Consensus        64 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~  141 (568)
T 2vsy_A           64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDW  141 (568)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhcc
Confidence            456677889999999999999999999999999997666 58999999999999999999999999999988887 8   


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 027439          203 KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 G~~eeAi~~fekAL~l~Pdn  222 (223)
                      |++++|+.+|+++++.+|++
T Consensus       142 g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          142 RALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             TTHHHHHHHHHHHHHHTCCC
T ss_pred             ccHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999975

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.16  E-value=2.4e-10  Score=96.46  Aligned_cols=95  Identities=14%  Similarity=0.071  Sum_probs=88.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +..|...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.++++++..+|+++.++..+|.+++. .|++
T Consensus       127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~  204 (359)
T 3ieg_A          127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI-KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ-LGDH  204 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence            346667889999999999999999999999999997666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus       205 ~~A~~~~~~a~~~~~~~  221 (359)
T 3ieg_A          205 ELSLSEVRECLKLDQDH  221 (359)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhCccc
Confidence            99999999999999975

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.16  E-value=1.3e-10  Score=84.53  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=63.3

Q ss_pred             hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       148 ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      .+|+++.++.++|.+++ ..+++++|+.+|+++++++|+++.++..+|.++.. .|++++|+.+|++++++.|
T Consensus         2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhh
Confidence            57999999999997666 58999999999999999999999999999988877 9999999999999998865

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.16  E-value=9.9e-11  Score=96.40  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=64.5

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHc
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN----VLSMYGDLIWQSH  202 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~----~l~~lA~ll~~~~  202 (223)
                      ..|...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.+|++++. .|+++.    ++..+|.++.. .
T Consensus        11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~   87 (272)
T 3u4t_A           11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-K   87 (272)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-c
Confidence            34555677777777777777777777777777775444 46777777777777777 444333    36677766666 7


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 027439          203 KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 G~~eeAi~~fekAL~l~Pdn  222 (223)
                      |++++|+.+|+++++.+|++
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~  107 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTR  107 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTC
T ss_pred             ccHHHHHHHHHHHHhcCccc
Confidence            77777777777777777764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.15  E-value=2.6e-10  Score=101.65  Aligned_cols=94  Identities=18%  Similarity=0.149  Sum_probs=85.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+.+|+++++.+| ++.++.++|.++. ..+++++|+.+|+++++++|++..++..+|.++.. .|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~   89 (514)
T 2gw1_A           13 GNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYV-SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG-LGKF   89 (514)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHH-HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HhhH
Confidence            3456678899999999999999999 6999999997666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|++++..+|.+
T Consensus        90 ~~A~~~~~~~~~~~~~~  106 (514)
T 2gw1_A           90 ADAMFDLSVLSLNGDFN  106 (514)
T ss_dssp             HHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHhcCCCc
Confidence            99999999999998754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.15  E-value=3.2e-11  Score=116.25  Aligned_cols=94  Identities=6%  Similarity=-0.122  Sum_probs=84.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+..|+++++++|+++.++.++|.++. .++++++|++.|++|++++|+++.++..+|.++.. .|++
T Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g~~  517 (681)
T 2pzi_A          440 VRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AGNT  517 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCC
T ss_pred             HHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCh
Confidence            445566799999999999999999999999999997666 58999999999999999999999999999988777 8999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++ +.+|++|++++|++
T Consensus       518 ~~-~~~~~~al~~~P~~  533 (681)
T 2pzi_A          518 DE-HKFYQTVWSTNDGV  533 (681)
T ss_dssp             CT-TCHHHHHHHHCTTC
T ss_pred             HH-HHHHHHHHHhCCch
Confidence            99 99999999999975

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.14  E-value=1.9e-10  Score=96.42  Aligned_cols=86  Identities=16%  Similarity=0.115  Sum_probs=50.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD  213 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fe  213 (223)
                      ++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.+|++++..+|++..++..+|.++.. .|++++|+.+|+
T Consensus       106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~  183 (330)
T 3hym_B          106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-TNNSKLAERFFS  183 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            5566666666666666666666666664444 35666666666666666666555555555555544 566666666666


Q ss_pred             HHHHhCCC
Q 027439          214 QAVKAAPD  221 (223)
Q Consensus       214 kAL~l~Pd  221 (223)
                      ++++.+|+
T Consensus       184 ~al~~~~~  191 (330)
T 3hym_B          184 QALSIAPE  191 (330)
T ss_dssp             HHHTTCTT
T ss_pred             HHHHhCCC
Confidence            66655554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.14  E-value=2.3e-10  Score=95.32  Aligned_cols=95  Identities=14%  Similarity=0.042  Sum_probs=82.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQ  200 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~  200 (223)
                      ..+...+++++|+.+|+++++.+|++   +.++..+|.+++ .++++++|+..|++++..+|++   +.+++.+|.+++.
T Consensus        23 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~  101 (261)
T 3qky_A           23 MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK  101 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence            44556789999999999999999999   899999997776 5899999999999999998855   6778888965443


Q ss_pred             H-------cCCHHHHHHHHHHHHHhCCCC
Q 027439          201 S-------HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       201 ~-------~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .       .|++++|+.+|+++++.+|++
T Consensus       102 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A          102 LSPPYELDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             HCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             hcccccccchhHHHHHHHHHHHHHHCcCc
Confidence            1       799999999999999999975

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.14  E-value=2.4e-10  Score=95.79  Aligned_cols=91  Identities=16%  Similarity=0.126  Sum_probs=51.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      .+|...+++++|+.+|+++++.+|.+..++..+|.++. ..+++++|+.+|+++++.+|+++.++..+|.++.. .|+++
T Consensus       133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~  210 (330)
T 3hym_B          133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG-LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-NGEWK  210 (330)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cccHH
Confidence            44444555666666666666666655555555554333 35566666666666666666655555555555554 55566


Q ss_pred             HHHHHHHHHHHhC
Q 027439          207 RAESYFDQAVKAA  219 (223)
Q Consensus       207 eAi~~fekAL~l~  219 (223)
                      +|+.+|+++++..
T Consensus       211 ~A~~~~~~a~~~~  223 (330)
T 3hym_B          211 TAEKWFLDALEKI  223 (330)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666555543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.13  E-value=1.5e-10  Score=96.47  Aligned_cols=95  Identities=20%  Similarity=0.043  Sum_probs=83.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHhCCCCHHHH---
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEA--------RGDLLKAEEYCARAILMSPNDGNVL---  191 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~--------~gdyeeA~~~~ekAL~ldP~d~~~l---  191 (223)
                      |.+|...+++++|+..|+++++.+|++   +.++..+|.+++ .        .+++++|+..|++++..+|+++.+.   
T Consensus        59 g~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  137 (261)
T 3qky_A           59 ARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT  137 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence            456677899999999999999998855   678899996655 6        7999999999999999999987766   


Q ss_pred             --------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          192 --------------SMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       192 --------------~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                                    +.+|.+++. .|++++|+..|+++++..|++
T Consensus       138 ~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          138 QKIRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCC
Confidence                          778988887 999999999999999999974

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.11  E-value=3.8e-10  Score=108.77  Aligned_cols=92  Identities=13%  Similarity=-0.084  Sum_probs=84.8

Q ss_pred             cCCCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439          130 PNNHGNNSTDLYYQKMI--------QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aL--------eldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~  201 (223)
                      ...+++++|+++|++++        +.+|++..++.++|.++. .++++++|+..|+++++++|+++.+++.+|.+++. 
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-
Confidence            34679999999999999        999999999999997776 58999999999999999999999999999988887 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCC
Q 027439          202 HKDASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pdn~  223 (223)
                      .|++++|+..|++|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~  501 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGEL  501 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCS
T ss_pred             cCCHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999863

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.11  E-value=4.1e-10  Score=85.69  Aligned_cols=91  Identities=14%  Similarity=-0.018  Sum_probs=79.6

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL--IWQSHK  203 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l--l~~~~G  203 (223)
                      |.+|...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|+.+|+++++++|++..++..++.+  +.. .+
T Consensus        54 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~-~~  131 (166)
T 1a17_A           54 SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-QK  131 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HH
Confidence            455667789999999999999999999999999996666 58999999999999999999999988655544  555 89


Q ss_pred             CHHHHHHHHHHHHHh
Q 027439          204 DASRAESYFDQAVKA  218 (223)
Q Consensus       204 ~~eeAi~~fekAL~l  218 (223)
                      ++++|+..++++..+
T Consensus       132 ~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          132 AFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccchHHH
Confidence            999999999998755

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.11  E-value=3e-10  Score=100.18  Aligned_cols=95  Identities=12%  Similarity=0.150  Sum_probs=86.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPL----LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~----~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~  201 (223)
                      +..|...+++++|+.+|+++++++|.++.    ++.++|.++. ..+++++|+.+|++++.++|+++.++..+|.++.. 
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-  341 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS-KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI-  341 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence            45666778999999999999999999954    7888896666 58999999999999999999999999999988888 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 027439          202 HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .|++++|+.+|+++++++|++
T Consensus       342 ~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          342 EEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             TTCHHHHHHHHHHHHTTSSSC
T ss_pred             hcCHHHHHHHHHHHHHhCcch
Confidence            999999999999999999985

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.11  E-value=6.5e-10  Score=100.04  Aligned_cols=95  Identities=14%  Similarity=0.196  Sum_probs=82.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..+++++|+.+|++++..+|+++.++..+|.+++. .|++
T Consensus       283 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~  360 (537)
T 3fp2_A          283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKF  360 (537)
T ss_dssp             HHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence            455667788999999999999999999999999996666 58999999999999999999999999999988777 8999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|+++++.+|++
T Consensus       361 ~~A~~~~~~~~~~~~~~  377 (537)
T 3fp2_A          361 TESEAFFNETKLKFPTL  377 (537)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999988875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.11  E-value=1e-10  Score=92.61  Aligned_cols=48  Identities=8%  Similarity=-0.031  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          173 AEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       173 A~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      |+..++++++++|+++.+++.+|.++.. .|++++|+..|+++++.+|+
T Consensus        93 a~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~  140 (176)
T 2r5s_A           93 ELKRLEQELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLG  140 (176)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcc
Confidence            3445556666677777777777776666 78888888888888877775

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.10  E-value=1.7e-10  Score=103.80  Aligned_cols=94  Identities=22%  Similarity=0.253  Sum_probs=80.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...+++++|+.+|+++++.+|+++.++.++|.++. .++++++|+..|+++++++|+++.++..+|.++.. .|++
T Consensus        32 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~  109 (537)
T 3fp2_A           32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI-STGDLEKVIEFTTKALEIKPDHSKALLRRASANES-LGNF  109 (537)
T ss_dssp             HHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-cCCH
Confidence            345667789999999999999999999999999997666 58999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|+ ++..+|+.
T Consensus       110 ~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A          110 TDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHHHHH-HHC-----
T ss_pred             HHHHHHHH-HHhcCCCC
Confidence            99999995 77776653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.10  E-value=6.1e-10  Score=96.26  Aligned_cols=97  Identities=11%  Similarity=-0.098  Sum_probs=82.1

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLK-EARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~-~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G  203 (223)
                      -+.+|...|++++|++.|+++++.+|++..+....+.+.. ...+++++|+.+|++++..+|+++.++..+|.++.. .|
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g  214 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QG  214 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC
Confidence            3456777899999999999999999998755443332221 124799999999999999999999999999987777 99


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 027439          204 DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++++|+..|+++++++|+|
T Consensus       215 ~~~eA~~~l~~al~~~p~~  233 (291)
T 3mkr_A          215 RWEAAEGVLQEALDKDSGH  233 (291)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999986

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.09  E-value=5.6e-10  Score=102.20  Aligned_cols=96  Identities=15%  Similarity=0.140  Sum_probs=87.0

Q ss_pred             ccccccCCCChHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQA------DPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLel------dP~n-~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      -+.+|...|++++|+++|+++++.      +|++ ..++..++.++. +.|++++|+++|+++++++|+++.++..++.+
T Consensus       481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  559 (597)
T 2xpi_A          481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR-KLKMYDAAIDALNQGLLLSTNDANVHTAIALV  559 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            345666778999999999999998      6765 789999997766 58999999999999999999999999999988


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          198 IWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       198 l~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.. .|++++|+.+|+++++++|++
T Consensus       560 ~~~-~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          560 YLH-KKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHH-hCCHHHHHHHHHHHHhcCCCC
Confidence            888 999999999999999999986

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.08  E-value=6e-10  Score=77.18  Aligned_cols=71  Identities=24%  Similarity=0.294  Sum_probs=44.6

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW  199 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~  199 (223)
                      .|...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|+.+|+++++++|+++.++..++.++.
T Consensus        18 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3444566666666666666666666666666664444 3566666666666666666666666666665544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.08  E-value=4.5e-10  Score=85.27  Aligned_cols=69  Identities=13%  Similarity=0.199  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+.++.++|..++ .+++|++|+.+|++|++++|+++.++..+|.+++. .|++++|+..|+++++++|++
T Consensus         7 ~A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            7 AAIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCccc
Confidence            3567889998777 58999999999999999999999999999988888 999999999999999998754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.07  E-value=4.9e-10  Score=98.78  Aligned_cols=91  Identities=11%  Similarity=0.031  Sum_probs=81.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...+++++|+.+|+++++++|+++.++.++|.++. .++++++|+.+|++|++++|++..++..++.++.. .+++
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~-~~~~  280 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR-IRRQ  280 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHH
Confidence            456677899999999999999999999999999997776 58999999999999999999999999999988777 8999


Q ss_pred             HHH-HHHHHHHHHh
Q 027439          206 SRA-ESYFDQAVKA  218 (223)
Q Consensus       206 eeA-i~~fekAL~l  218 (223)
                      ++| ...|++++..
T Consensus       281 ~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          281 LAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            988 5677777654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.07  E-value=3.1e-10  Score=93.31  Aligned_cols=95  Identities=19%  Similarity=0.139  Sum_probs=81.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQ  200 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~---~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~---~l~~lA~ll~~  200 (223)
                      ..+...+++++|+.+|+++++.+|.++   .++.++|.+++ .++++++|+..|+++++.+|+++.   +++.+|.+++.
T Consensus        12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~   90 (225)
T 2yhc_A           12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA   90 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence            345566899999999999999999874   78999997776 589999999999999999999875   78888877654


Q ss_pred             H-----------------cCCHHHHHHHHHHHHHhCCCC
Q 027439          201 S-----------------HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       201 ~-----------------~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .                 .|++++|+..|+++++..|++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~  129 (225)
T 2yhc_A           91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS  129 (225)
T ss_dssp             HHC--------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred             hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence            1                 578999999999999999986

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.05  E-value=3.2e-10  Score=97.16  Aligned_cols=95  Identities=13%  Similarity=0.019  Sum_probs=78.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCC------HHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEAR-GDLLKAEEYCARAILMSPND------GNVLS  192 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~-gdyeeA~~~~ekAL~ldP~d------~~~l~  192 (223)
                      |.+|...|++++|+.+|++++++.|..      +.++.++|.++. .+ +++++|+.+|++|+++.|++      ..++.
T Consensus        84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~  162 (292)
T 1qqe_A           84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI  162 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            456677789999999999999987754      467889995555 55 99999999999999998765      46788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+|.++.. +|++++|+.+|++++++.|++
T Consensus       163 ~lg~~~~~-~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          163 KCADLKAL-DGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHHHHhcC
Confidence            88988777 999999999999999988764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.05  E-value=9.2e-10  Score=94.66  Aligned_cols=85  Identities=19%  Similarity=0.229  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 027439          136 NSTDLYYQKMIQ-ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-VLSMYGDLIWQSHKDASRAESYFD  213 (223)
Q Consensus       136 ~eA~~~y~~aLe-ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~-~l~~lA~ll~~~~G~~eeAi~~fe  213 (223)
                      ++|+.+|+++++ ++|++..+|.++|.++. ..+++++|+..|+++++++|+++. +|..++.++.. .|++++|+..|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence            788888888888 68888888888886555 578888888888888888888876 78888877666 788888888888


Q ss_pred             HHHHhCCCC
Q 027439          214 QAVKAAPDD  222 (223)
Q Consensus       214 kAL~l~Pdn  222 (223)
                      +|++.+|.+
T Consensus       159 ~a~~~~p~~  167 (308)
T 2ond_A          159 KAREDARTR  167 (308)
T ss_dssp             HHHTSTTCC
T ss_pred             HHHhcCCCC
Confidence            888877754

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.05  E-value=4.4e-10  Score=92.40  Aligned_cols=96  Identities=9%  Similarity=-0.021  Sum_probs=81.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-----------------hCCHHHHHHHHHHHHHhCC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPL---LLSNYARFLKEA-----------------RGDLLKAEEYCARAILMSP  185 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~---~l~nlA~~l~~~-----------------~gdyeeA~~~~ekAL~ldP  185 (223)
                      |.+|...+++++|+..|+++++.+|++..   ++..+|.+++..                 .+++++|+..|+++++.+|
T Consensus        48 g~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P  127 (225)
T 2yhc_A           48 IYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP  127 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence            45677789999999999999999999864   788888666531                 4689999999999999999


Q ss_pred             CCHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          186 NDGNVL-----------------SMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       186 ~d~~~l-----------------~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +++.+.                 ..+|.+++. .|++++|+..|+++++..|++
T Consensus       128 ~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~  180 (225)
T 2yhc_A          128 NSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDT  180 (225)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTS
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCC
Confidence            998654                 456766777 999999999999999999875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.04  E-value=5.2e-10  Score=96.20  Aligned_cols=95  Identities=14%  Similarity=0.188  Sum_probs=65.9

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPL-LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~-~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      .++...+++++|+++|+++++++|.++. +|.+++.++. +.+++++|+..|++|++.+|.+..++..++.+.+...|++
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~  185 (308)
T 2ond_A          107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred             HHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence            3445567888999999999998888876 8888886655 4677777777777777776666666655554433335666


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|+++++.+|++
T Consensus       186 ~~A~~~~~~al~~~p~~  202 (308)
T 2ond_A          186 SVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            77777777776666653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.04  E-value=1.1e-10  Score=103.26  Aligned_cols=96  Identities=11%  Similarity=0.083  Sum_probs=51.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...++|++|+.+|+++++++|+++.+++++|.++. .++++++|+.+|+++++++|++..++..++.+.....+..
T Consensus       237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC-----------------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence            455677899999999999999999999999999997766 5899999999999999999999999999998766657888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      +++...|++++...|++
T Consensus       316 ~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          316 QKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHhhCCCCCC
Confidence            99999999999998875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.03  E-value=9.4e-11  Score=92.78  Aligned_cols=94  Identities=17%  Similarity=0.043  Sum_probs=79.6

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++..+| ++.++..++.+.+....+..
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~   91 (176)
T 2r5s_A           14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAES   91 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccc
Confidence            34556789999999999999999999999999997666 68999999999999999999 88887776655443233445


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+..|+++++.+|++
T Consensus        92 ~a~~~~~~al~~~P~~  107 (176)
T 2r5s_A           92 PELKRLEQELAANPDN  107 (176)
T ss_dssp             HHHHHHHHHHHHSTTC
T ss_pred             hHHHHHHHHHHhCCCC
Confidence            6899999999999986

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.03  E-value=2.1e-09  Score=74.36  Aligned_cols=70  Identities=21%  Similarity=0.386  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       151 ~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .++.++.++|..+. ..+++++|+.+|++++.++|+++.++..+|.+++. .+++++|+.+|+++++++|++
T Consensus         7 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            7 NSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence            45778899996666 58999999999999999999999999999988888 999999999999999999975

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.02  E-value=2.8e-10  Score=97.56  Aligned_cols=96  Identities=15%  Similarity=0.088  Sum_probs=79.2

Q ss_pred             ccccccCC-CChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-------H
Q 027439          125 WGSWDPNN-HGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-------V  190 (223)
Q Consensus       125 gg~~Y~~~-gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~-------~  190 (223)
                      -|.+|... +++++|+.+|++++++.|.+      ..++.++|.++. .+++|++|+.+|+++++++|++..       +
T Consensus       123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  201 (292)
T 1qqe_A          123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA-LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (292)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            35667775 99999999999999998865      567899997666 589999999999999999998754       5


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       191 l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +..++.++.. .|++++|+.+|+++++++|+.
T Consensus       202 ~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          202 FLKKGLCQLA-ATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            6778876666 999999999999999988863

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.8e-09  Score=80.13  Aligned_cols=71  Identities=13%  Similarity=0.032  Sum_probs=64.8

Q ss_pred             CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       150 P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      |.++..+.++|..++ ..++|++|+.+|+++++++|+++.++..+|.+++. .|++++|+..|+++++++|++
T Consensus         1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~   71 (126)
T 3upv_A            1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNF   71 (126)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCc
Confidence            445678899997777 58999999999999999999999999999988888 999999999999999999986

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.01  E-value=1.7e-09  Score=99.03  Aligned_cols=94  Identities=14%  Similarity=0.057  Sum_probs=59.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...+++++|+.+|+++++++|.+..+|..++..+. ..|++++|+++|+++++.+|++..++..++.++.. .|+++
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~  458 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNIL  458 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHH
Confidence            44455566666666666666666666666666664444 35666666666666666666666666666655555 66666


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++.+|++
T Consensus       459 ~A~~~~~~~~~~~~~~  474 (597)
T 2xpi_A          459 LANEYLQSSYALFQYD  474 (597)
T ss_dssp             HHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            6666666666666553

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.01  E-value=1.6e-09  Score=77.45  Aligned_cols=69  Identities=12%  Similarity=0.002  Sum_probs=63.4

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++.++.++|..++ ..+++++|+.+|+++++++|+++.++..+|.+++. .|++++|+..|+++++++|++
T Consensus         3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCc
Confidence            4677889997666 58999999999999999999999999999988888 999999999999999999986

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.00  E-value=1.9e-09  Score=79.30  Aligned_cols=72  Identities=11%  Similarity=0.029  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          149 DPRNPLLLSNYARFLKEARGD---LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       149 dP~n~~~l~nlA~~l~~~~gd---yeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +|+|+.++..+|.+++. .++   .++|..++++|+.++|+++.++..+|.+++. .|+|++|+.+|+++++.+|++
T Consensus         2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            69999999999999875 444   7999999999999999999999999999888 999999999999999998863

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.98  E-value=3e-09  Score=94.73  Aligned_cols=96  Identities=16%  Similarity=0.155  Sum_probs=77.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQA---------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDG  188 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLel---------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--------P~d~  188 (223)
                      |.+|...|++++|+++|++++++         +|....++.++|.+++ .+|++++|+.+|++++++.        ++.+
T Consensus        58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            45666788999999999999986         6788889999996666 5899999999999998863        4567


Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 027439          189 NVLSMYGDLIWQS-HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       189 ~~l~~lA~ll~~~-~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .++...|.++... .+++++|+.+|++|++++|++
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~  171 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN  171 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence            7888888665542 357899999999999999876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.97  E-value=8.6e-10  Score=98.24  Aligned_cols=94  Identities=14%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPL------LLSNYARFLKEA---RGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~------~l~nlA~~l~~~---~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      .+|...+++++|+.+|+++++.+|.+..      ++.++|.++. .   .+++++|+.+|++++..+|+++.++..+|.+
T Consensus       380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  458 (514)
T 2gw1_A          380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM  458 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            3445556677777777777776666643      6667774444 4   5777777777777777777777777777766


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          198 IWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       198 l~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.. .|++++|+.+|+++++++|++
T Consensus       459 ~~~-~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          459 KLQ-QEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCSSH
T ss_pred             HHH-hcCHHHHHHHHHHHHHhcccc
Confidence            666 777777777777777777753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.97  E-value=7e-09  Score=77.04  Aligned_cols=74  Identities=12%  Similarity=0.020  Sum_probs=66.8

Q ss_pred             HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       147 eldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ..+|.++..+..+|..++ ..++|++|+.+|++++.++|+++.++..+|.+++. .+++++|+.+|+++++++|++
T Consensus         3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchh
Confidence            467889999999997777 58999999999999999999999999999988887 999999999999999999986

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.96  E-value=2.1e-09  Score=76.05  Aligned_cols=72  Identities=14%  Similarity=0.216  Sum_probs=66.5

Q ss_pred             hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       148 ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      ++|+++.++..+|.++. ..+++++|+.+|+++++++|++..++..+|.+++. .+++++|+.+|+++++.+|+
T Consensus         1 l~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcc
Confidence            47889999999996666 58999999999999999999999999999988887 99999999999999999987

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.94  E-value=1.3e-09  Score=90.57  Aligned_cols=94  Identities=20%  Similarity=0.270  Sum_probs=82.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------------  183 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLel--------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l--------------  183 (223)
                      |.+|...+++++|+.+|++++++        +|....++.++|.++. ..+++++|+.+|++++..              
T Consensus       160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  238 (311)
T 3nf1_A          160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL-KQGKFKQAETLYKEILTRAHEREFGSVDDENK  238 (311)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence            45677789999999999999998        7777889999997666 589999999999999984              


Q ss_pred             -----------------------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          184 -----------------------------------SPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       184 -----------------------------------dP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                                                         +|.+..++..+|.++.. .|++++|+.+|++++++.|+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR-QGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhhc
Confidence                                               46778889999988887 99999999999999999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.94  E-value=4.5e-09  Score=81.71  Aligned_cols=72  Identities=17%  Similarity=0.093  Sum_probs=66.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       149 dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++.++..+..+|..++ ..++|++|+.+|+++++++|+++.++..+|.+++. .|++++|+.+|+++++++|++
T Consensus         7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~   78 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKY   78 (164)
T ss_dssp             CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            4566788999997776 58999999999999999999999999999988888 999999999999999999986

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.94  E-value=1.4e-09  Score=88.71  Aligned_cols=92  Identities=14%  Similarity=0.203  Sum_probs=81.9

Q ss_pred             ccccccCCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------SPNDG  188 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLel--------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l--------dP~d~  188 (223)
                      -|.+|...+++++|+.+|++++++        +|....++.++|.++. ..+++++|+.+|++++.+        +|...
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            345667788999999999999998        5777889999997666 589999999999999999        77778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .++..+|.+++. .|++++|+.+|++++++
T Consensus       170 ~~~~~la~~~~~-~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          170 KTKNNLASCYLK-QGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence            899999988888 99999999999999987

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.92  E-value=2.1e-09  Score=86.11  Aligned_cols=90  Identities=18%  Similarity=0.112  Sum_probs=72.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...+++++|+.+|+++++++|+++.++.++|.++. .++++++|+.+|+++++++|++..++..++.++.. .++.
T Consensus        95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~  172 (198)
T 2fbn_A           95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK-LKEA  172 (198)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HHHH
Confidence            456677889999999999999999999999999997776 58999999999999999999999999999987766 7777


Q ss_pred             HHHH-HHHHHHHH
Q 027439          206 SRAE-SYFDQAVK  217 (223)
Q Consensus       206 eeAi-~~fekAL~  217 (223)
                      +++. ..|.+.+.
T Consensus       173 ~~~~~~~~~~~f~  185 (198)
T 2fbn_A          173 RKKDKLTFGGMFD  185 (198)
T ss_dssp             HC-----------
T ss_pred             HHHHHHHHHHHhc
Confidence            7776 45555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.91  E-value=4e-10  Score=104.44  Aligned_cols=94  Identities=14%  Similarity=0.007  Sum_probs=78.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL--IWQSHK  203 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l--l~~~~G  203 (223)
                      |.+|...+++++|+++|+++++++|+++.++.++|.++. .++++++|+++|++|++++|++..++..++.+  +.. .+
T Consensus        47 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~g  124 (477)
T 1wao_1           47 SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-QK  124 (477)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HH
Confidence            456677899999999999999999999999999997666 58999999999999999999999999999977  555 89


Q ss_pred             CHHHHHHHHH-----------HHHHhCCC
Q 027439          204 DASRAESYFD-----------QAVKAAPD  221 (223)
Q Consensus       204 ~~eeAi~~fe-----------kAL~l~Pd  221 (223)
                      ++++|+..++           ++++++|+
T Consensus       125 ~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1          125 AFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHHHHhccccccchhHhhhhhhhcccccc
Confidence            9999999999           77666654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.90  E-value=4.7e-09  Score=75.85  Aligned_cols=78  Identities=13%  Similarity=0.086  Sum_probs=69.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|+.+|++++.++|+++.++..++.++.. .|++
T Consensus        53 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~  130 (131)
T 2vyi_A           53 AAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS-SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK-LREA  130 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HTTC
T ss_pred             HHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HhcC
Confidence            455667789999999999999999999999999997666 58999999999999999999999999999987766 6654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.90  E-value=5.9e-09  Score=76.11  Aligned_cols=76  Identities=14%  Similarity=0.017  Sum_probs=68.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G  203 (223)
                      |.+|...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|+.+|++++.++|++..++..++.++.. .+
T Consensus        57 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~  132 (133)
T 2lni_A           57 AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE-AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA-QY  132 (133)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH-HT
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hc
Confidence            455667789999999999999999999999999996666 68999999999999999999999999999987766 44

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.89  E-value=1.8e-09  Score=87.95  Aligned_cols=91  Identities=20%  Similarity=0.279  Sum_probs=79.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------SPNDGN  189 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLel--------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l--------dP~d~~  189 (223)
                      |.+|...+++++|+.+|++++++        +|....++.++|.++. ..+++++|+.+|++++.+        +|....
T Consensus        50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  128 (283)
T 3edt_B           50 ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAK  128 (283)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            45566778999999999999988        4667788999996666 589999999999999998        577788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      ++..+|.+++. .|++++|+.+|++++++
T Consensus       129 ~~~~la~~~~~-~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          129 QLNNLALLCQN-QGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence            89999988887 99999999999999987

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.87  E-value=4.1e-09  Score=77.90  Aligned_cols=69  Identities=17%  Similarity=0.107  Sum_probs=61.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      |.+|...+++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++++..+|+++.+.....
T Consensus        34 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            456777899999999999999999999999999997776 589999999999999999999998765443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.86  E-value=3.8e-09  Score=94.04  Aligned_cols=61  Identities=16%  Similarity=0.233  Sum_probs=27.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY  194 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~l  194 (223)
                      +++++|+.+|+++++.+|.+..++.++|.++. ..+++++|+.+|++|++.+|+++.++..+
T Consensus       227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l  287 (472)
T 4g1t_A          227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR-RKDEPDKAIELLKKALEYIPNNAYLHCQI  287 (472)
T ss_dssp             ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence            34444555555555555555555545543333 34455555555555544444444444333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.85  E-value=2.2e-08  Score=75.37  Aligned_cols=65  Identities=12%  Similarity=0.017  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       156 l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +..+|..+. ..+++++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++++|++
T Consensus        20 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           20 PMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence            567886666 58999999999999999999999999999988887 999999999999999999986

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.84  E-value=5.8e-09  Score=89.87  Aligned_cols=94  Identities=12%  Similarity=0.010  Sum_probs=73.3

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH------HHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG------NVLS  192 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~------~~l~  192 (223)
                      .|.+|.. +++++|+.+|++++++.|..      ..++.++|.++. .+++|++|+.+|++++.+.|++.      .++.
T Consensus       122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (307)
T 2ifu_A          122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI  199 (307)
T ss_dssp             HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence            3556767 89999999999999887654      567888996665 58999999999999998866542      3566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .++.+++. .|++++|+.+|++++ ++|+.
T Consensus       200 ~~g~~~~~-~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          200 AQVLVQLH-RADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHh-CCCCC
Confidence            66655555 899999999999999 88753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.84  E-value=2.3e-08  Score=70.87  Aligned_cols=64  Identities=17%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          157 SNYARFLKEARGDLLKAEEYCARAILMSPNDGN-VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       157 ~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~-~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+.|..+. ..+++++|+.+|+++++.+|+++. ++..+|.+++. .|++++|+.+|+++++++|++
T Consensus         4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc
Confidence            45675555 589999999999999999999999 99999988887 999999999999999999986

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.83  E-value=2.9e-08  Score=84.46  Aligned_cols=91  Identities=9%  Similarity=0.072  Sum_probs=76.2

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhCCCCH----HHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAI---LMSPNDG----NVLSM  193 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL---~ldP~d~----~~l~~  193 (223)
                      ..|...+++++|+.+|+++++..+..      ..++.++|.++. .+++|++|+.+|++|+   +..|++.    .++.+
T Consensus       123 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n  201 (293)
T 2qfc_A          123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence            34555679999999999999876544      668999996666 5899999999999999   5567654    68899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          194 YGDLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       194 lA~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      +|.+++. .|++++|+.+|++++++.
T Consensus       202 lg~~y~~-~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          202 HAKALYL-DSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence            9988887 999999999999999874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.82  E-value=6.7e-09  Score=86.06  Aligned_cols=93  Identities=11%  Similarity=0.104  Sum_probs=80.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYG  195 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l------dP~d~~~l~~lA  195 (223)
                      |..+...+++++|+.+|+++++.+|.+    ..++..+|.++. ..+++++|+.++++++.+      .|....++..+|
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~   90 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   90 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            345567789999999999999999999    467889996666 589999999999999988      555678899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          196 DLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       196 ~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      .+++. .|++++|+.+|++++++.+
T Consensus        91 ~~~~~-~g~~~~A~~~~~~al~~~~  114 (338)
T 3ro2_A           91 NTLKV-LGNFDEAIVCCQRHLDISR  114 (338)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-ccCHHHHHHHHHHHHHHHH
Confidence            88877 9999999999999998743

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.81  E-value=1.2e-08  Score=88.88  Aligned_cols=91  Identities=15%  Similarity=0.139  Sum_probs=81.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNP----LLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYG  195 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~----~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l------dP~d~~~l~~lA  195 (223)
                      |..|...+++++|+.+|+++++++|++.    .++..+|.++. ..+++++|+.+|++++.+      +|....++..+|
T Consensus        55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  133 (411)
T 4a1s_A           55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG  133 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence            4455667999999999999999999997    57889997666 589999999999999998      677889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 027439          196 DLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       196 ~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .+++. .|++++|+.+|++++++
T Consensus       134 ~~~~~-~g~~~~A~~~~~~al~~  155 (411)
T 4a1s_A          134 NTLKV-MGRFDEAAICCERHLTL  155 (411)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHH
Confidence            88887 99999999999999987

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.80  E-value=7.1e-09  Score=77.10  Aligned_cols=90  Identities=12%  Similarity=0.063  Sum_probs=68.6

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMY  194 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~l  194 (223)
                      ..|...+++++|+.+|++++++.+...      .++.++|.++. ..+++++|+.++++++.+.+..      ..++..+
T Consensus        17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   95 (164)
T 3ro3_A           17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL   95 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            445567788999999999888755322      46778886555 5789999999999888876543      5677788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          195 GDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       195 A~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      |.+++. .|++++|+.+|+++++.
T Consensus        96 ~~~~~~-~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           96 GNTYTL-LQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HhhHHHHHHHHHHHHHH
Confidence            877777 88999999999888865

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.79  E-value=6.3e-09  Score=88.62  Aligned_cols=92  Identities=12%  Similarity=0.065  Sum_probs=76.8

Q ss_pred             ccccccCCCChHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQA-------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVL  191 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLel-------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l  191 (223)
                      -|.+|...+++++|+.+|+++++.       .+....++.++|.++. .+++|++|+.++++|+++.+..      +.++
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            455677889999999999999952       2233568899997666 5899999999999999987554      7899


Q ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 027439          192 SMYGDLIWQSHK-DASRAESYFDQAVKA  218 (223)
Q Consensus       192 ~~lA~ll~~~~G-~~eeAi~~fekAL~l  218 (223)
                      ..+|.+++. .| ++++|+.+|++|+.+
T Consensus       240 ~~lg~~~~~-~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          240 YQRGECLRK-LEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-hCCcHHHHHHHHHHHHHH
Confidence            999988887 88 579999999999976

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.79  E-value=2.1e-08  Score=86.00  Aligned_cols=83  Identities=13%  Similarity=0.144  Sum_probs=73.0

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND--GNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d--~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      +.++|++.|+++++.+|+++.++.++|.++. ..|++++|+..|++++..+|++  ..++..++.++.. .|+.++|+..
T Consensus       200 ~~~~a~~~l~~al~~~P~~~~~~~~la~~l~-~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~-~g~~~~a~~~  277 (287)
T 3qou_A          200 ADTPEIQQLQQQVAENPEDAALATQLALQLH-QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA-LGTGDALASX  277 (287)
T ss_dssp             TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH-HCTTCHHHHH
T ss_pred             ccCccHHHHHHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH-cCCCCcHHHH
Confidence            3444667778888999999999999997666 5899999999999999999998  8899999987766 9999999999


Q ss_pred             HHHHHHh
Q 027439          212 FDQAVKA  218 (223)
Q Consensus       212 fekAL~l  218 (223)
                      |++++..
T Consensus       278 ~r~al~~  284 (287)
T 3qou_A          278 YRRQLYA  284 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.78  E-value=9.6e-09  Score=94.31  Aligned_cols=89  Identities=8%  Similarity=-0.018  Sum_probs=73.5

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~  204 (223)
                      -|.+|...++|++|+.+|+++++++|+++.+++++|.++. .+++|++|+.+|++|++++|++..++..++.++.. .++
T Consensus       323 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~-~~~  400 (457)
T 1kt0_A          323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK-AKE  400 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHH
Confidence            3566777899999999999999999999999999997777 58999999999999999999999999999987776 888


Q ss_pred             HHHHHH-HHHHH
Q 027439          205 ASRAES-YFDQA  215 (223)
Q Consensus       205 ~eeAi~-~fekA  215 (223)
                      +++|.. .|++.
T Consensus       401 ~~~a~~~~~~~~  412 (457)
T 1kt0_A          401 HNERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            887764 34433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.78  E-value=1.2e-08  Score=87.85  Aligned_cols=93  Identities=11%  Similarity=0.094  Sum_probs=80.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNP----LLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYG  195 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~----~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l------dP~d~~~l~~lA  195 (223)
                      |..+...+++++|+.+|+++++++|.+.    .++..+|.+++ ..+++++|+.+|++++.+      .|....++..+|
T Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la   94 (406)
T 3sf4_A           16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   94 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            4556677999999999999999999984    67889996666 589999999999999887      455677899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          196 DLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       196 ~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      .+++. .|++++|+.+|++++++.|
T Consensus        95 ~~~~~-~g~~~~A~~~~~~al~~~~  118 (406)
T 3sf4_A           95 NTLKV-LGNFDEAIVCCQRHLDISR  118 (406)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-cCCHHHHHHHHHHHHHHHH
Confidence            88877 9999999999999998754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.78  E-value=1.3e-08  Score=75.67  Aligned_cols=93  Identities=12%  Similarity=0.109  Sum_probs=76.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------CHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN------DGNVLSM  193 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~------d~~~l~~  193 (223)
                      |.+|...+++++|+.+|++++++.+..      ..++.++|.++. ..+++++|+.++++++.+.+.      ...++..
T Consensus        56 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  134 (164)
T 3ro3_A           56 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS  134 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence            445667789999999999999876543      667889996666 589999999999999987432      2567888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          194 YGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       194 lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      +|.+++. .|++++|+.+|++++++..
T Consensus       135 la~~~~~-~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          135 LGNAYTA-LGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH-ccCHHHHHHHHHHHHHHHH
Confidence            8988777 9999999999999998743

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.78  E-value=2.6e-09  Score=82.96  Aligned_cols=73  Identities=15%  Similarity=-0.032  Sum_probs=63.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIW  199 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~-~~l~~lA~ll~  199 (223)
                      |.+|...+++++|+.+|+++++++|.++.++.++|.++. .++++++|+..|+++++++|+++ .+...+..+..
T Consensus        70 a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           70 SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARI-AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            345667789999999999999999999999999997776 58999999999999999999999 66666665543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.77  E-value=3.8e-08  Score=79.40  Aligned_cols=88  Identities=13%  Similarity=0.075  Sum_probs=78.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG---DLLKAEEYCARAILMS-P-NDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g---dyeeA~~~~ekAL~ld-P-~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      .....+++.|++.++.+|.+..+.++||+++. +..   ++++|+.+++.+++.+ | ++.+.++.+|..+++ .++|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv-~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHH
Confidence            35678899999999999999999999997666 455   7789999999999999 7 568999999988887 999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 027439          208 AESYFDQAVKAAPDD  222 (223)
Q Consensus       208 Ai~~fekAL~l~Pdn  222 (223)
                      |+.+++++++.+|+|
T Consensus        90 A~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999999999987

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.77  E-value=3.8e-08  Score=70.37  Aligned_cols=74  Identities=24%  Similarity=0.323  Sum_probs=66.3

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      +.+|...+++++|+.+|+++++.+|.+..++.++|.++. ..+++++|+.+|++++..+|+++.++..++.++..
T Consensus        50 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            345566789999999999999999999999999997666 58999999999999999999999999999977654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.77  E-value=4.2e-09  Score=90.75  Aligned_cols=92  Identities=13%  Similarity=0.123  Sum_probs=75.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPR--N----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSM  193 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~--n----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~  193 (223)
                      |.+|...+++++|+.+|++++++.+.  +    ..++.++|.++. . +++++|+.+|++|+.+.|..      ..++..
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  160 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK  160 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            35666778999999999999988532  2    467889995554 5 99999999999999998754      577888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          194 YGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       194 lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      +|.++.. .|++++|+.+|++++++.|
T Consensus       161 lg~~~~~-~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          161 ASRLLVR-QQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHHHH
Confidence            9988777 9999999999999998754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.77  E-value=5.8e-09  Score=86.52  Aligned_cols=92  Identities=15%  Similarity=0.223  Sum_probs=80.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQAD--------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------SPNDGN  189 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeld--------P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l--------dP~d~~  189 (223)
                      |.+|...+++++|+.+|++++++.        |....++.++|.++. ..+++++|+.+|++++.+        +|....
T Consensus       118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  196 (311)
T 3nf1_A          118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK  196 (311)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            456677889999999999999884        666788999996666 589999999999999998        777788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      ++..+|.+++. .|++++|+.+|+++++..
T Consensus       197 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          197 TKNNLASCYLK-QGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence            89999988888 999999999999999763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.76  E-value=1.5e-08  Score=88.79  Aligned_cols=92  Identities=13%  Similarity=0.087  Sum_probs=79.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hC-CCCHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAIL-----MS-PNDGNVLSM  193 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~-----ld-P~d~~~l~~  193 (223)
                      |.+|...+++++|+.+|++++++.+..      ..++.++|.++. .++++++|+.+|++|+.     .+ |..+.++..
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  269 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN-SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL  269 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            456777899999999999999885543      258999996666 68999999999999999     56 888999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          194 YGDLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       194 lA~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      +|.+++. .|++++|+.+|++++++.
T Consensus       270 l~~~~~~-~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          270 ITQIHYK-LGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence            9988888 999999999999999873

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.75  E-value=9.4e-09  Score=87.52  Aligned_cols=91  Identities=10%  Similarity=0.049  Sum_probs=73.3

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCHHHHHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILM-------SPNDGNVLSMY  194 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-------dP~d~~~l~~l  194 (223)
                      +|...+++++|+.+|++++++.+..      ..++.++|.++. .+++|++|+.+|++|++.       .+....++.++
T Consensus       124 ~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nl  202 (293)
T 3u3w_A          124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH  202 (293)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            3445569999999999999965433      347899996666 589999999999999952       22334678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          195 GDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       195 A~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      |.+++. +|++++|+.+|++|+++.+
T Consensus       203 g~~y~~-~~~y~~A~~~~~~al~~~~  227 (293)
T 3u3w_A          203 AKALYL-DSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence            988888 9999999999999998753

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.75  E-value=1.3e-08  Score=79.91  Aligned_cols=90  Identities=10%  Similarity=0.038  Sum_probs=66.1

Q ss_pred             ccccCCCChHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCC----HHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQ------ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM---SPND----GNVLSM  193 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLe------ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l---dP~d----~~~l~~  193 (223)
                      .+|...+++++|+.+|+++++      ..|....++.++|.++. ..+++++|+.++++++.+   .+++    ..++..
T Consensus        34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  112 (203)
T 3gw4_A           34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYE  112 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence            445566788888888888887      44555677888885555 578888888888888887   4433    455777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          194 YGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       194 lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +|.+++. .|++++|+.+|++++++
T Consensus       113 lg~~~~~-~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A          113 VATVALH-FGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hCCHHHHHHHHHHHHHH
Confidence            7877776 88888888888888765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.74  E-value=2.6e-08  Score=91.61  Aligned_cols=94  Identities=15%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~-~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      .++...+++++|+.+|+++++++|.++ .+|.+++.++. +.+++++|+.+|++|++..|.+..++...+.+.+...|++
T Consensus       329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~  407 (530)
T 2ooe_A          329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK  407 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH
T ss_pred             HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh
Confidence            444566889999999999999998885 58888886544 3455555555555555555554444444443333335555


Q ss_pred             HHHHHHHHHHHHhCCC
Q 027439          206 SRAESYFDQAVKAAPD  221 (223)
Q Consensus       206 eeAi~~fekAL~l~Pd  221 (223)
                      ++|+.+|+++++.+|+
T Consensus       408 ~~A~~~~e~al~~~p~  423 (530)
T 2ooe_A          408 SVAFKIFELGLKKYGD  423 (530)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHCCC
Confidence            5555555555555554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.74  E-value=2.2e-08  Score=89.94  Aligned_cols=84  Identities=14%  Similarity=0.051  Sum_probs=74.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...+++++|+.+|+++++++|+++.++.++|.++. .++++++|+.+|++|++++|++..++..++.++.. .+++
T Consensus       280 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~-~~~~  357 (370)
T 1ihg_A          280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK-IKAQ  357 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHH
Confidence            455667899999999999999999999999999997766 58999999999999999999999999999987766 7777


Q ss_pred             HHHHHH
Q 027439          206 SRAESY  211 (223)
Q Consensus       206 eeAi~~  211 (223)
                      ++|...
T Consensus       358 ~~a~k~  363 (370)
T 1ihg_A          358 KDKEKA  363 (370)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            776543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.72  E-value=2.7e-08  Score=84.66  Aligned_cols=91  Identities=14%  Similarity=0.053  Sum_probs=77.2

Q ss_pred             cccccCCCChHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------CHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMI---QADPRNP----LLLSNYARFLKEARGDLLKAEEYCARAILMSPN------DGNVLS  192 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aL---eldP~n~----~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~------d~~~l~  192 (223)
                      |.+|...+++++|+.+|++++   +..|++.    .++.++|.++. .+++|++|+.+|++|+.+.++      ...++.
T Consensus       162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~  240 (293)
T 2qfc_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH-HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            567777899999999999999   5567653    68899996666 689999999999999988643      278899


Q ss_pred             HHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 027439          193 MYGDLIWQSHKDASRA-ESYFDQAVKA  218 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeA-i~~fekAL~l  218 (223)
                      .+|.++.. .|++++| ..+|++|+.+
T Consensus       241 ~lg~~y~~-~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          241 QRGECLRK-LEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-cCCcHHHHHHHHHHHHHH
Confidence            99988777 9999999 8889999876

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.72  E-value=1.1e-07  Score=67.45  Aligned_cols=69  Identities=17%  Similarity=0.077  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .+..+..+|..+. ..+++++|+.+|++++..+|+++.++..+|.+++. .+++++|+.+|+++++.+|++
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~   71 (118)
T 1elw_A            3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDW   71 (118)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCccc
Confidence            3567888996666 58999999999999999999999999999988887 999999999999999999875

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.72  E-value=3.7e-08  Score=87.34  Aligned_cols=88  Identities=11%  Similarity=0.155  Sum_probs=78.1

Q ss_pred             CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCC
Q 027439          133 HGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEAR-----GDLLKAEEYCARAILMSPND-GNVLSMYGDLIWQSHKD  204 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~--n~~~l~nlA~~l~~~~-----gdyeeA~~~~ekAL~ldP~d-~~~l~~lA~ll~~~~G~  204 (223)
                      ....+|...+++++++||+  +..+|..+|. +|...     |+.++|.++|+||++++|+. ..++..||..+....++
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~-lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTK-FYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-HHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHH-HHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            4778999999999999999  6779999994 55443     89999999999999999975 99999999987774699


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 027439          205 ASRAESYFDQAVKAAPD  221 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pd  221 (223)
                      +++|..++++|++.+|.
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999998775

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=8.7e-08  Score=71.22  Aligned_cols=74  Identities=15%  Similarity=0.052  Sum_probs=67.3

Q ss_pred             HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       147 eldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ..+|.++..+..+|..++ ..+++++|+.+|+++++.+|++   ..++..+|.+++. .+++++|+.+|+++++++|++
T Consensus        22 ~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCC
T ss_pred             ccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccC
Confidence            467889999999997666 5899999999999999999988   8999999988777 999999999999999999875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.72  E-value=1e-07  Score=79.25  Aligned_cols=84  Identities=18%  Similarity=0.262  Sum_probs=46.0

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---  201 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~----~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~---  201 (223)
                      |...+++++|+.+|+++++  |+++.++.++|.++. .    .+++++|+.+|+++++.+  ++.++..+|.+ +..   
T Consensus        16 ~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~-~~~g~~   89 (273)
T 1ouv_A           16 SYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNL-YYSGQG   89 (273)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH-HHHTSS
T ss_pred             HHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH-HhCCCC
Confidence            3444556666666666655  555555556663333 4    456666666666665553  55555555533 333   


Q ss_pred             -cCCHHHHHHHHHHHHHh
Q 027439          202 -HKDASRAESYFDQAVKA  218 (223)
Q Consensus       202 -~G~~eeAi~~fekAL~l  218 (223)
                       .+++++|+.+|+++++.
T Consensus        90 ~~~~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           90 VSQNTNKALQYYSKACDL  107 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHT
T ss_pred             cccCHHHHHHHHHHHHHc
Confidence             45566666666665544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.71  E-value=7.6e-08  Score=91.52  Aligned_cols=87  Identities=10%  Similarity=0.091  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 027439          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD----------LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-  203 (223)
Q Consensus       135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gd----------yeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-  203 (223)
                      .++|+++++++++++|++..+|+.++.++.. .++          +++|+++++++++.+|++..+|...++++.. .+ 
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~-l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSS
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccc
Confidence            4788999999999999999999999977764 666          9999999999999999999999999988777 88 


Q ss_pred             -CHHHHHHHHHHHHHhCCCCC
Q 027439          204 -DASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       204 -~~eeAi~~fekAL~l~Pdn~  223 (223)
                       ++++|+++++++++++|.|+
T Consensus       123 ~~~~~el~~~~k~l~~d~~N~  143 (567)
T 1dce_A          123 PNWARELELCARFLEADERNF  143 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccHHHHHHHHHHHHhhccccc
Confidence             67999999999999999874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.70  E-value=6.5e-08  Score=79.15  Aligned_cols=86  Identities=13%  Similarity=0.068  Sum_probs=68.9

Q ss_pred             CCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 027439          132 NHGNNSTDLYYQKMIQADP--RNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK--  203 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP--~n~~~l~nlA~~l~~~----~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G--  203 (223)
                      .+++++|+.+|+++++..|  .++.++.++|.++. .    .+++++|+.+|++|+++ |.++.++..+|.++..-.+  
T Consensus       102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~  179 (212)
T 3rjv_A          102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA-SGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGF  179 (212)
T ss_dssp             SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH-HTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTT
T ss_pred             ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCC
Confidence            4588999999999998888  45888889995544 4    56899999999999988 6778888889976665223  


Q ss_pred             ---CHHHHHHHHHHHHHhC
Q 027439          204 ---DASRAESYFDQAVKAA  219 (223)
Q Consensus       204 ---~~eeAi~~fekAL~l~  219 (223)
                         ++++|+.+|++|++..
T Consensus       180 ~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          180 IEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             BCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcC
Confidence               8999999999998764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.69  E-value=3.1e-08  Score=86.98  Aligned_cols=94  Identities=12%  Similarity=-0.011  Sum_probs=81.0

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCHHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADP------RNPLLLSNYARFLKEARGDLLKAEEYCARAIL-----MSPNDGNVLSM  193 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP------~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~-----ldP~d~~~l~~  193 (223)
                      -|.+|...+++++|+.+|++++++.+      ....++.++|.++. .++++++|+.+|++|+.     .+|....++..
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence            34566778999999999999998643      12467899996666 58999999999999999     88888999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          194 YGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       194 lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      +|.+++. .|++++|+.+|++++++.+
T Consensus       267 la~~~~~-~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          267 LSWTLCK-AGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence            9988888 9999999999999999854

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.66  E-value=1.3e-07  Score=83.77  Aligned_cols=88  Identities=11%  Similarity=0.081  Sum_probs=80.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc---CC
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLI----WQSH---KD  204 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g--dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll----~~~~---G~  204 (223)
                      ..++|+++++++|.++|++..+|+.++.++.. ++  +++++++++++++..+|++..+|...+.++    .. .   ++
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~-l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-l~~~~~  125 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILKN-LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-NNNDFD  125 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-TTTCCC
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH-cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-ccccCC
Confidence            44799999999999999999999999987774 77  999999999999999999999999999887    44 5   78


Q ss_pred             HHHHHHHHHHHHHhCCCCC
Q 027439          205 ASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       205 ~eeAi~~fekAL~l~Pdn~  223 (223)
                      +++++..++++++.+|.|+
T Consensus       126 ~~~EL~~~~~~l~~~pkny  144 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNH  144 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.65  E-value=1.3e-07  Score=69.24  Aligned_cols=74  Identities=9%  Similarity=0.009  Sum_probs=64.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      |.+|...+++++|+.+|+++++.+|++   +.++.++|.++. .++++++|+.+|++++..+|+++.+......+...
T Consensus        46 g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           46 GESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY-GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            455677889999999999999999999   899999997666 58999999999999999999999887766654433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.65  E-value=2.2e-07  Score=77.21  Aligned_cols=82  Identities=15%  Similarity=0.208  Sum_probs=59.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cC
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS----HK  203 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~----~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~----~G  203 (223)
                      .+++++|+.+|+++++.+  ++.++.++|.++. .    .+++++|+.+|+++++.  +++.++..+|.+ +..    .+
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~-~~~~~~~~~  128 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGI-YHDGKVVTR  128 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH-HHHCSSSCC
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHH-HHcCCCccc
Confidence            457788888888887775  6777777874444 5    67788888888888776  367777777754 333    67


Q ss_pred             CHHHHHHHHHHHHHhC
Q 027439          204 DASRAESYFDQAVKAA  219 (223)
Q Consensus       204 ~~eeAi~~fekAL~l~  219 (223)
                      ++++|+.+|+++++.+
T Consensus       129 ~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLN  144 (273)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            7888888888877654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.64  E-value=1.3e-07  Score=86.86  Aligned_cols=86  Identities=16%  Similarity=0.244  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------hCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 027439          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEA------RGDLL-------KAEEYCARAIL-MSPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~------~gdye-------eA~~~~ekAL~-ldP~d~~~l~~lA~ll~~~  201 (223)
                      .+++.+|++++..+|.++.+|.++|.++...      .|+++       +|+..|++|+. ++|++..+|..++.++.. 
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  333 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            4777888999988898898888888665531      57776       88888999987 788888888888877666 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 027439          202 HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .|++++|+..|+++++++|++
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~  354 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDID  354 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSC
T ss_pred             cCCHHHHHHHHHHHhCccccC
Confidence            888999999999988888764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.64  E-value=7.4e-08  Score=69.57  Aligned_cols=69  Identities=10%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       151 ~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      ..+..+..+|..++ ..+++++|+.+|++++..+|+++.++..+|.+++. .|++++|+.+|++++...|+
T Consensus         2 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~   70 (131)
T 1elr_A            2 KQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRE   70 (131)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccc
Confidence            34667889996666 58999999999999999999999999999988887 99999999999999998764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.63  E-value=1.3e-07  Score=83.69  Aligned_cols=89  Identities=10%  Similarity=0.061  Sum_probs=81.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHh---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLK---EAR---GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS-  206 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~---~~~---gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e-  206 (223)
                      +++++++++++++..+|.+..+|+.++.++.   ...   +++++++++|+++++.+|+|..+|...++++.. .++++ 
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~-l~~~~~  162 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT-FDLHND  162 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCTTC
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcccCh
Confidence            8999999999999999999999999997771   235   789999999999999999999999999988777 89888 


Q ss_pred             -HHHHHHHHHHHhCCCCC
Q 027439          207 -RAESYFDQAVKAAPDDW  223 (223)
Q Consensus       207 -eAi~~fekAL~l~Pdn~  223 (223)
                       +++++++++++.+|.|+
T Consensus       163 ~~EL~~~~~~i~~d~~N~  180 (306)
T 3dra_A          163 AKELSFVDKVIDTDLKNN  180 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCH
Confidence             99999999999999884

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.63  E-value=5.3e-08  Score=83.73  Aligned_cols=91  Identities=12%  Similarity=0.086  Sum_probs=71.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSM  193 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~  193 (223)
                      |.+|...+++++|+.+|++++++.|..      ..++.++|.++. ..+++++|+.+|++++.+.+..      ..++..
T Consensus       234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  312 (406)
T 3sf4_A          234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS  312 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            345666778888988888888877665      677888886555 5788999999988888875544      667788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          194 YGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       194 lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +|.++.. .|++++|+.+|++++++
T Consensus       313 la~~~~~-~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          313 LGNAYTA-LGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHH
Confidence            8877777 88899999998888876

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.62  E-value=1.8e-08  Score=88.29  Aligned_cols=90  Identities=12%  Similarity=0.085  Sum_probs=63.8

Q ss_pred             cccCCCChHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQA---DP---RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSMY  194 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLel---dP---~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d-------~~~l~~l  194 (223)
                      .|...+++++|+.+|++++++   .+   ..+.++.++|.+++ ..+++++|+.++++|+++.+..       ..++..+
T Consensus       112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            344556888888888888876   22   24577788885555 4788888888888888774433       3467777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          195 GDLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       195 A~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      |.++.. .|++++|+.+|++|+++.
T Consensus       191 g~~~~~-~g~~~~A~~~~~~al~~~  214 (383)
T 3ulq_A          191 ATNFLD-LKQYEDAISHFQKAYSMA  214 (383)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-hcCHHHHHHHHHHHHHHH
Confidence            766666 888888888888887663

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.62  E-value=7.4e-08  Score=69.74  Aligned_cols=60  Identities=8%  Similarity=0.106  Sum_probs=54.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN  186 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~  186 (223)
                      |.+|...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|++.|++++++.|+
T Consensus        14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A           14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhc
Confidence            456677899999999999999999999999999996666 689999999999999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.62  E-value=1.6e-07  Score=80.28  Aligned_cols=71  Identities=13%  Similarity=0.016  Sum_probs=65.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       150 P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      |.++..+..+|..++ ..++|++|+.+|++|+..+|+++.++..+|.+++. .|++++|+..|+++++++|++
T Consensus         1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTC
T ss_pred             ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCC
Confidence            677889999997776 58999999999999999999999999999988887 999999999999999999986

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.61  E-value=3.6e-08  Score=81.60  Aligned_cols=92  Identities=11%  Similarity=0.062  Sum_probs=64.5

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMY  194 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~l  194 (223)
                      .+|...+++++|+.+|++++++.+..      ..++..+|.++. ..+++++|+.++++++.+.+..      ..++..+
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  309 (338)
T 3ro2_A          231 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL  309 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            44455677888888888888776554      667777775555 4788888888888887765432      4466777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          195 GDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       195 A~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      |.++.. .|++++|+.+|++++++.+
T Consensus       310 a~~~~~-~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          310 GNAYTA-LGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHH-HTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHH-cCChHHHHHHHHHHHHHHH
Confidence            766666 7888888888888887654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.60  E-value=5.7e-08  Score=76.20  Aligned_cols=91  Identities=16%  Similarity=0.148  Sum_probs=73.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCH----HHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQA---DPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSP--NDG----NVLS  192 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLel---dP~n----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP--~d~----~~l~  192 (223)
                      |.+|...+++++|+.+|++++++   .+++    ..++.++|.++. ..+++++|+.++++++.+.+  .+.    .++.
T Consensus        73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  151 (203)
T 3gw4_A           73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL-HFGDLAGARQEYEKSLVYAQQADDQVAIACAFR  151 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            34566778999999999999998   4433    567889996666 58999999999999997642  233    3457


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .+|.+++. .|++++|+.+|++++++
T Consensus       152 ~la~~~~~-~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          152 GLGDLAQQ-EKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence            88877777 99999999999999876

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.60  E-value=1.2e-07  Score=76.85  Aligned_cols=59  Identities=10%  Similarity=0.104  Sum_probs=52.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-----------GDLLKAEEYCARAILMSPNDGNVLSM  193 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~-----------gdyeeA~~~~ekAL~ldP~d~~~l~~  193 (223)
                      .+++|+.+|+++|+++|++..+|+++|.++.. +           +++++|+++|++|++++|++......
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~-lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a  130 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  130 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            47899999999999999999999999988874 4           48999999999999999998755443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.60  E-value=1.8e-07  Score=89.00  Aligned_cols=86  Identities=9%  Similarity=0.087  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 027439          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-DASRAESY  211 (223)
Q Consensus       135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g--dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-~~eeAi~~  211 (223)
                      +++|+++|+++++.+|++..+|..++.++. +.+  ++++|+++|+++++++|+|..+|...+.++.. .+ .+++|+++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH-cCCChHHHHHH
Confidence            899999999999999999999999996666 578  77999999999999999999999999988887 77 99999999


Q ss_pred             HHHHHHhCCCC
Q 027439          212 FDQAVKAAPDD  222 (223)
Q Consensus       212 fekAL~l~Pdn  222 (223)
                      ++++++.+|+|
T Consensus       167 ~~~~I~~~p~n  177 (567)
T 1dce_A          167 TDSLITRNFSN  177 (567)
T ss_dssp             HHTTTTTTCCC
T ss_pred             HHHHHHHCCCC
Confidence            99999999987

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.59  E-value=5.2e-08  Score=84.88  Aligned_cols=93  Identities=13%  Similarity=0.050  Sum_probs=70.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSM  193 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~  193 (223)
                      +.+|...+++++|+.+|++++++.+..      ..++.++|.++. ..+++++|+.+|++++.+.+..      ..++..
T Consensus       270 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  348 (411)
T 4a1s_A          270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT-LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWS  348 (411)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence            445666778888888888888877654      677788886555 5788888888888888875432      457778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          194 YGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       194 lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      +|.++.. .|++++|+.+|++++++.+
T Consensus       349 la~~~~~-~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          349 LGNAHSA-IGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHH-hccHHHHHHHHHHHHHHHh
Confidence            8877776 8888888888888887754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.59  E-value=1.2e-07  Score=87.73  Aligned_cols=85  Identities=13%  Similarity=0.025  Sum_probs=70.9

Q ss_pred             CCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHH
Q 027439          132 NHGNNSTDLYYQKMIQA-----DPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILM-----SPNDGNV---LSMYG  195 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLel-----dP~n~---~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-----dP~d~~~---l~~lA  195 (223)
                      .|+|++|+.+|++++++     .|+++   .++.++|.++. .+|+|++|+.+|++++++     .|+++.+   +.++|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            46899999999999984     56665   56889996666 589999999999999986     4666654   77788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 027439          196 DLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       196 ~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .+++. +|++++|+.+|+||+++
T Consensus       390 ~~~~~-qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          390 RLYMG-LENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHh-ccCHHHHHHHHHHHHHH
Confidence            77777 99999999999999986

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.58  E-value=9.7e-07  Score=67.98  Aligned_cols=90  Identities=18%  Similarity=0.183  Sum_probs=74.6

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~----~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      -|.+|....++++|+.+|+++.+.  .++.++.++|.++. .    .+++++|+++|++|.+.  .++.++..+|.++..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE-NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            345666667888899999999987  78999999995554 4    68999999999999986  689999999965443


Q ss_pred             H---cCCHHHHHHHHHHHHHhC
Q 027439          201 S---HKDASRAESYFDQAVKAA  219 (223)
Q Consensus       201 ~---~G~~eeAi~~fekAL~l~  219 (223)
                      -   .+++++|+.+|++|.+..
T Consensus       106 G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          106 GKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCcCHHHHHHHHHHHHHCC
Confidence            1   689999999999998874

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.58  E-value=2.4e-07  Score=75.14  Aligned_cols=68  Identities=19%  Similarity=0.172  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 027439          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-------DGN-----VLSMYGDLIWQSHKDASRAESYFDQAVKA--  218 (223)
Q Consensus       153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~-------d~~-----~l~~lA~ll~~~~G~~eeAi~~fekAL~l--  218 (223)
                      +..+.+.|..++ ..|+|++|+..|++||+++|+       +..     +|.++|.++.. +|++++|+..|++|+++  
T Consensus        11 a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence            456788997777 589999999999999999999       544     99999987777 99999999999999999  


Q ss_pred             -----CCCC
Q 027439          219 -----APDD  222 (223)
Q Consensus       219 -----~Pdn  222 (223)
                           +|++
T Consensus        89 ~~~e~~pd~   97 (159)
T 2hr2_A           89 RRGELNQDE   97 (159)
T ss_dssp             HHCCTTSTH
T ss_pred             ccccCCCch
Confidence                 9974

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.55  E-value=1.5e-07  Score=88.37  Aligned_cols=88  Identities=14%  Similarity=0.084  Sum_probs=72.5

Q ss_pred             ccCCCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHH---HH
Q 027439          129 DPNNHGNNSTDLYYQKMIQA-----DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILM-----SPNDGNV---LS  192 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLel-----dP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-----dP~d~~~---l~  192 (223)
                      +..+|+|++|+.+|++++++     .|++   +.++.++|.++. .+|+|++|+.+|++++++     .|+++.+   +.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            34678999999999999985     4555   467889996666 589999999999999986     4666654   67


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      ++|.+++. +|++++|+.+|++|+++
T Consensus       398 nLa~~~~~-~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          398 RAGLTNWH-AGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence            77877777 99999999999999976

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.55  E-value=7e-07  Score=81.45  Aligned_cols=87  Identities=11%  Similarity=0.045  Sum_probs=72.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------------------------------------------HHHhCC
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFL-------------------------------------------KEARGD  169 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l-------------------------------------------~~~~gd  169 (223)
                      .++.+|+.+|+++++++|+++.++..++.++                                           ....++
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd  292 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK  292 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence            4568899999999999999988777544322                                           123689


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          170 LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       170 yeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +++|+.++++|+.++| +..++..+|.++.. .|++++|++.|++|+.++|.
T Consensus       293 ~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999997 57778888877777 99999999999999999986

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.53  E-value=3.3e-07  Score=82.89  Aligned_cols=89  Identities=9%  Similarity=0.055  Sum_probs=81.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-DASRAESY  211 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g-dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-~~eeAi~~  211 (223)
                      ..++|+++++++|.++|++..+|+.++.++.. .+ +++++++++++++..+|++..+|...++++....+ ++++++.+
T Consensus        69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTS-LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            45789999999999999999999999977774 67 69999999999999999999999999988887337 89999999


Q ss_pred             HHHHHHhCCCCC
Q 027439          212 FDQAVKAAPDDW  223 (223)
Q Consensus       212 fekAL~l~Pdn~  223 (223)
                      ++++++.+|.|+
T Consensus       148 ~~k~L~~dpkNy  159 (349)
T 3q7a_A          148 IHGSLLPDPKNY  159 (349)
T ss_dssp             HHHHTSSCTTCH
T ss_pred             HHHHHHhCCCCH
Confidence            999999999874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.52  E-value=2.6e-07  Score=75.58  Aligned_cols=83  Identities=16%  Similarity=0.088  Sum_probs=67.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH---cC
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSP--NDGNVLSMYGDLIWQS---HK  203 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~----~gdyeeA~~~~ekAL~ldP--~d~~~l~~lA~ll~~~---~G  203 (223)
                      .++++|+.+|++++  ++.++.++.++|.++. .    .+++++|+.+|++|++..|  +++.++..+|.++..-   .+
T Consensus        67 ~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~  143 (212)
T 3rjv_A           67 ADYPQARQLAEKAV--EAGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE  143 (212)
T ss_dssp             CCHHHHHHHHHHHH--HTTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred             CCHHHHHHHHHHHH--HCCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence            38999999999985  4678999999995544 3    5799999999999999888  3588999999655441   56


Q ss_pred             CHHHHHHHHHHHHHh
Q 027439          204 DASRAESYFDQAVKA  218 (223)
Q Consensus       204 ~~eeAi~~fekAL~l  218 (223)
                      ++++|+.+|++|++.
T Consensus       144 d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          144 DDVKASEYFKGSSSL  158 (212)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            899999999999887

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.52  E-value=7.6e-07  Score=79.86  Aligned_cols=88  Identities=13%  Similarity=0.008  Sum_probs=63.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD-LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH----------  202 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gd-yeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~----------  202 (223)
                      ++++++++++++++.+|.|..+|...+.++. ..+. ++++++++.++|+.+|.|..+|...+.++....          
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~-~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~  203 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  203 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence            4677777777777778877777777775444 4566 577777778888778877777777776665521          


Q ss_pred             ---CCHHHHHHHHHHHHHhCCCC
Q 027439          203 ---KDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       203 ---G~~eeAi~~fekAL~l~Pdn  222 (223)
                         +.++++++++++++..+|+|
T Consensus       204 ~~~~~~~eEle~~~~ai~~~P~d  226 (331)
T 3dss_A          204 LPENVLLKELELVQNAFFTDPND  226 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             cchHHHHHHHHHHHHHHHhCCCC
Confidence               34677777788887777775

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.51  E-value=2.1e-07  Score=67.88  Aligned_cols=61  Identities=11%  Similarity=0.128  Sum_probs=54.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND  187 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d  187 (223)
                      |.+|...+++++|+.+|+++++++|.+..++.++|.++. ..+++++|+.+|++++.++|++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccc
Confidence            456677899999999999999999999999999997666 5899999999999999998853

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.49  E-value=1.7e-06  Score=77.51  Aligned_cols=88  Identities=9%  Similarity=0.075  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD-ASRAES  210 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g--dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~-~eeAi~  210 (223)
                      .+++++.+++.++..+|.+..+|...+.++. ..+  ++++++.+|.++++.+|.|..+|...+.++.. .+. ++++++
T Consensus        89 ~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~-~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~  166 (331)
T 3dss_A           89 LVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELA  166 (331)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHH
Confidence            3789999999999999999999999996665 577  49999999999999999999999999988777 787 699999


Q ss_pred             HHHHHHHhCCCCC
Q 027439          211 YFDQAVKAAPDDW  223 (223)
Q Consensus       211 ~fekAL~l~Pdn~  223 (223)
                      ++++++..+|.|+
T Consensus       167 ~~~~~I~~~p~N~  179 (331)
T 3dss_A          167 FTDSLITRNFSNY  179 (331)
T ss_dssp             HHHHHHHHCSCCH
T ss_pred             HHHHHHHHCCCCH
Confidence            9999999999873

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.44  E-value=1.9e-06  Score=63.40  Aligned_cols=69  Identities=14%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             cccccCCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQAD-------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeld-------P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      |..+...++|..|+..|++|++..       +..+.++.++|.+++ ++|++++|+.++++|++++|++..++.++.
T Consensus        12 G~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            445566788999999999988753       345788888886666 588999999999999999999988877776

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.42  E-value=3.9e-07  Score=80.19  Aligned_cols=92  Identities=7%  Similarity=-0.192  Sum_probs=75.2

Q ss_pred             cccCCCChHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHc
Q 027439          128 WDPNNHGNNSTDLYYQKMIQAD-PRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMS--PN-DGNVLSMYGDLIWQSH  202 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeld-P~n-~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--P~-d~~~l~~lA~ll~~~~  202 (223)
                      +|...++|++|+.+|+++++.. |.. ..++.++|.++. .+|++++|+.+|++++...  |. .+.+++.+|.++.. +
T Consensus       144 l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-l  221 (282)
T 4f3v_A          144 VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-Q  221 (282)
T ss_dssp             HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-H
T ss_pred             HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-c
Confidence            4566789999999998877653 221 357899996655 6999999999999999654  55 66789999977777 9


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 027439          203 KDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       203 G~~eeAi~~fekAL~l~Pd  221 (223)
                      |+.++|+..|++++..+|+
T Consensus       222 Gr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          222 GNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             TCHHHHHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHHHhcCCc
Confidence            9999999999999999986

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.41  E-value=2.6e-07  Score=81.02  Aligned_cols=87  Identities=10%  Similarity=-0.059  Sum_probs=59.6

Q ss_pred             cCCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQAD------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-------DGNVLSMYGD  196 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeld------P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~-------d~~~l~~lA~  196 (223)
                      ...+++++|+.+|++++++.      +..+.++.++|.+++ ..+++++|+.++++|+++.+.       ...++..+|.
T Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  190 (378)
T 3q15_A          112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG  190 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence            34567888888888887653      224567777775555 477888888888888776442       1345667776


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Q 027439          197 LIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       197 ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      ++.. .|++++|+.+|++|+++
T Consensus       191 ~y~~-~~~~~~A~~~~~~al~~  211 (378)
T 3q15_A          191 NYDD-FKHYDKALPHLEAALEL  211 (378)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHH-hCCHHHHHHHHHHHHHH
Confidence            6666 78888888888887765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.40  E-value=5e-07  Score=83.18  Aligned_cols=86  Identities=15%  Similarity=-0.003  Sum_probs=71.0

Q ss_pred             CCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHH---HHHH
Q 027439          131 NNHGNNSTDLYYQKMIQA-----DPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILM-----SPNDGNV---LSMY  194 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLel-----dP~n~---~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-----dP~d~~~---l~~l  194 (223)
                      ..++|++|++.|++++++     .|+++   .++.++|.++. .+|+|++|+.+|++++++     .|+++.+   +.++
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            457999999999999975     45554   56888996666 589999999999999976     3666654   6778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          195 GDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       195 A~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      |.+++. +|++++|+.+|++|+++
T Consensus       378 a~~~~~-~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          378 GKLQLH-QGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHh-cCCHHHHHHHHHHHHHH
Confidence            877777 99999999999999976

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.39  E-value=7.9e-07  Score=80.36  Aligned_cols=89  Identities=8%  Similarity=0.063  Sum_probs=80.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH------
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS------  206 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g-dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e------  206 (223)
                      +++++++++++++..+|++..+|+.++.++....+ +++++++++.++++.+|+|..+|...++++.. .+.++      
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~-l~~~~~~~~~~  182 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH-FSTLGRISEAQ  182 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH-HHHTTCCCHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccccccchhh
Confidence            68999999999999999999999999977764327 89999999999999999999999999988766 66666      


Q ss_pred             --HHHHHHHHHHHhCCCCC
Q 027439          207 --RAESYFDQAVKAAPDDW  223 (223)
Q Consensus       207 --eAi~~fekAL~l~Pdn~  223 (223)
                        +++++++++++.+|.|+
T Consensus       183 ~~eELe~~~k~I~~dp~N~  201 (349)
T 3q7a_A          183 WGSELDWCNEMLRVDGRNN  201 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCH
Confidence              99999999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.38  E-value=9.6e-07  Score=76.44  Aligned_cols=92  Identities=17%  Similarity=0.016  Sum_probs=76.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQAD--------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-----GNVLS  192 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeld--------P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d-----~~~l~  192 (223)
                      |.+|...|++++|+.+|++++++.        |....++.++|.+++ ..|++++|+.++++++.+.+..     ..++.
T Consensus       100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A          100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            345566789999999999999875        345667888997666 5899999999999999998753     45678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      .++.++.. .|++++|+.++++++.+.
T Consensus       179 ~la~~~~~-~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          179 MLIQCSLA-RGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             HHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence            88888777 999999999999998773

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.36  E-value=1.3e-06  Score=64.27  Aligned_cols=59  Identities=15%  Similarity=0.207  Sum_probs=52.0

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          162 FLKEARGDLLKAEEYCARAILMS-------PNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       162 ~l~~~~gdyeeA~~~~ekAL~ld-------P~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .++ .+++|..|+..|++|+...       +..+.++..+|.++++ +|++++|+.+++++++++|++
T Consensus        14 ~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A           14 VAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCC
Confidence            445 4799999999999999863       3568899999988888 999999999999999999986

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.35  E-value=4.8e-07  Score=78.39  Aligned_cols=93  Identities=16%  Similarity=0.115  Sum_probs=70.3

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNVLS  192 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--------P~d~~~l~  192 (223)
                      ..|...|++++|+.+|++++++.|..      ..++.++|.++. ..|++++|+.+|++++.+.        |....++.
T Consensus        61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  139 (373)
T 1hz4_A           61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR  139 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence            34455678999999999998875543      233677885555 5899999999999998875        33455677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      .+|.+++. .|++++|+.+|++++...+.
T Consensus       140 ~la~~~~~-~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          140 IRAQLLWA-WARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHH-hcCHHHHHHHHHHHHHHhhc
Confidence            78877777 89999999999999887664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.24  E-value=3.3e-06  Score=61.74  Aligned_cols=56  Identities=14%  Similarity=0.012  Sum_probs=50.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~  190 (223)
                      ..++|..+++++++++|+++.++..+|..++ ..++|++|+.+|+++++.+|.+++.
T Consensus        24 ~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~~~~~   79 (93)
T 3bee_A           24 MTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDPNLDR   79 (93)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCccH
Confidence            4699999999999999999999999997666 5899999999999999999985543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.19  E-value=2.8e-06  Score=77.52  Aligned_cols=89  Identities=12%  Similarity=0.099  Sum_probs=67.2

Q ss_pred             ccccCCC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 027439          127 SWDPNNH---GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR----GDLLKAEEYCARAILMSPNDGNVLSMYGDLIW  199 (223)
Q Consensus       127 ~~Y~~~g---d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~----gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~  199 (223)
                      .+|...+   ++++|+.+|+++.+.+|.++..+.++|.++. ..    +++++|+.+|+++.   |+++.+++.+|.+++
T Consensus       184 ~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~  259 (452)
T 3e4b_A          184 TVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLY  259 (452)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHH
T ss_pred             HHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence            3444456   7888888888888888888888888885443 22    58888888888887   788888888887644


Q ss_pred             --HHcCCHHHHHHHHHHHHHhC
Q 027439          200 --QSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       200 --~~~G~~eeAi~~fekAL~l~  219 (223)
                        ...+++++|+.+|+++.+.+
T Consensus       260 ~~~~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          260 DFPELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             HSGGGCCHHHHHHHHHHHHHTT
T ss_pred             hCCCCCCHHHHHHHHHHHHHCC
Confidence              33788888888888887653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.16  E-value=8.8e-06  Score=73.93  Aligned_cols=82  Identities=15%  Similarity=0.149  Sum_probs=56.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---SHKDAS  206 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~----~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~---~~G~~e  206 (223)
                      ++++|+.+|+++++.  +++.++.++|.++. .    .+++++|+.+|++|++.  +++.++..+|.++..   ..++++
T Consensus       346 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~  420 (490)
T 2xm6_A          346 EHKKAVEWFRKAAAK--GEKAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYV  420 (490)
T ss_dssp             HHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence            667777777777766  56777777774444 4    46778888888887775  357777777755443   157788


Q ss_pred             HHHHHHHHHHHhCC
Q 027439          207 RAESYFDQAVKAAP  220 (223)
Q Consensus       207 eAi~~fekAL~l~P  220 (223)
                      +|+.+|++|++.+|
T Consensus       421 ~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          421 QAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCC
Confidence            88888888877763

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.07  E-value=5.5e-06  Score=77.66  Aligned_cols=92  Identities=9%  Similarity=0.037  Sum_probs=72.5

Q ss_pred             ccccccCCCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQA-----DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILM-----SPNDGNVL  191 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLel-----dP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-----dP~d~~~l  191 (223)
                      -+.+|...|+|++|+.+|++++++     .|++   +..++++|.++. .+|+|++|+.+|++|+++     .|+++.+.
T Consensus       357 La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  435 (490)
T 3n71_A          357 ASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW-HAGHIEVGHGMICKAYAILLVTHGPSHPITK  435 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence            345666779999999999999975     4555   566899996655 689999999999999985     58888775


Q ss_pred             HH---HHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          192 SM---YGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       192 ~~---lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      ..   ++.+... ++.+++|+..|+++.+.
T Consensus       436 ~~~~~l~~~~~e-~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          436 DLEAMRMQTEME-LRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            54   4433444 88899999999998764

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.06  E-value=2.2e-05  Score=61.28  Aligned_cols=87  Identities=13%  Similarity=0.074  Sum_probs=73.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG---DLLKAEEYCARAILMS-P-NDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g---dyeeA~~~~ekAL~ld-P-~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      ....++..|++.+..++.+..+.++||+++- +..   +..+++.+++..+..+ | ..-+.++.+|..+++ .|+|++|
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv-~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHT-TSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHHH
Confidence            4567888899999989999999999996665 344   3456999999999987 5 466888999987888 9999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027439          209 ESYFDQAVKAAPDD  222 (223)
Q Consensus       209 i~~fekAL~l~Pdn  222 (223)
                      +.+++.+|+.+|+|
T Consensus        94 ~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           94 LKYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999999987

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.03  E-value=9.4e-06  Score=74.00  Aligned_cols=77  Identities=22%  Similarity=0.338  Sum_probs=47.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----CH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLK--EARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-----DA  205 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~--~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-----~~  205 (223)
                      +++++|+.+|+++.   |+++.++.++|.+++  ...+++++|+.+|++|++.  +++.+++.+|.++.  .|     ++
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~--~G~g~~~d~  303 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY--EGKWVPADA  303 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH--HCSSSCCCH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH--cCCCCCCCH
Confidence            46677777777765   666666667775433  2356666666666666653  35666666664433  34     66


Q ss_pred             HHHHHHHHHHH
Q 027439          206 SRAESYFDQAV  216 (223)
Q Consensus       206 eeAi~~fekAL  216 (223)
                      ++|+.+|++|.
T Consensus       304 ~~A~~~~~~Aa  314 (452)
T 3e4b_A          304 KAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHHh
Confidence            66666666665

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.02  E-value=3.5e-05  Score=59.09  Aligned_cols=79  Identities=20%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---SHKDASRAE  209 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~---~~G~~eeAi  209 (223)
                      +|+++|+.+|+++.+.....+.    +|.++. ....+++|+++|++|.+.  .++.+++.+|.++..   ..+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            5899999999999999865555    884444 467899999999999997  789999999965543   168999999


Q ss_pred             HHHHHHHHh
Q 027439          210 SYFDQAVKA  218 (223)
Q Consensus       210 ~~fekAL~l  218 (223)
                      .+|++|.+.
T Consensus        82 ~~~~~Aa~~   90 (138)
T 1klx_A           82 QYYSKACGL   90 (138)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            999999875

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.97  E-value=5e-05  Score=68.92  Aligned_cols=82  Identities=10%  Similarity=0.057  Sum_probs=55.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCC
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---HKD  204 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~----~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~---~G~  204 (223)
                      .+++++|+.+|+++++.  +++.++..+|.++. .    .+++++|+++|++|++.  +++.++..+|.++..-   .++
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~  130 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYM-NGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVD  130 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence            35777777777777765  56777777774433 4    56777777777777764  4677777777544331   457


Q ss_pred             HHHHHHHHHHHHHh
Q 027439          205 ASRAESYFDQAVKA  218 (223)
Q Consensus       205 ~eeAi~~fekAL~l  218 (223)
                      +++|+.+|+++.+.
T Consensus       131 ~~~A~~~~~~a~~~  144 (490)
T 2xm6_A          131 KAESVKWFRLAAEQ  144 (490)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            77777777777654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.92  E-value=3.2e-06  Score=74.28  Aligned_cols=87  Identities=10%  Similarity=-0.103  Sum_probs=72.4

Q ss_pred             ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHH
Q 027439          129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND--GNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d--~~~l~~lA~ll~~~~G~~e  206 (223)
                      +...++|++|.++|+.++..+|++. +.+.+|..++ ..+++++|+.+|++++...++.  ..+++.+|.++.. +|+++
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG~~~  188 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LALFT  188 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CCCHH
Confidence            4456899999999999999999998 8889995555 6899999999999888753221  3478899977666 99999


Q ss_pred             HHHHHHHHHHHh
Q 027439          207 RAESYFDQAVKA  218 (223)
Q Consensus       207 eAi~~fekAL~l  218 (223)
                      +|+.+|++++..
T Consensus       189 eAl~~l~~a~~g  200 (282)
T 4f3v_A          189 EAERRLTEANDS  200 (282)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhcC
Confidence            999999999843

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.82  E-value=3.2e-05  Score=68.82  Aligned_cols=82  Identities=20%  Similarity=0.143  Sum_probs=68.7

Q ss_pred             ChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILM----------SPNDGNVLSMYGDLIWQS  201 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~--n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l----------dP~d~~~l~~lA~ll~~~  201 (223)
                      ++.+|..+|+++.+..|+  ....+.+    ++..+|++++|+..++++++.          +|+|+.++.++..+.+. 
T Consensus       193 ~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~-  267 (310)
T 3mv2_B          193 TATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM-  267 (310)
T ss_dssp             TTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH-
Confidence            789999999999888887  3444444    344689999999999988876          59999999999877777 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 027439          202 HKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       202 ~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      .|+  +|.++++++.+.+|++
T Consensus       268 lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          268 QGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             TTC--TTHHHHHHHHHTTCCC
T ss_pred             hCh--HHHHHHHHHHHhCCCC
Confidence            887  8999999999999986

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=4.4e-05  Score=66.81  Aligned_cols=89  Identities=10%  Similarity=0.053  Sum_probs=72.2

Q ss_pred             ccCCCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 027439          129 DPNNHGNNSTDLYYQKMIQADP------RNPLLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYGD  196 (223)
Q Consensus       129 Y~~~gd~~eA~~~y~~aLeldP------~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l------dP~d~~~l~~lA~  196 (223)
                      +...+++++|+.+|++++...+      ....++.++|.++. ..|+|++|..++++++..      .+....++...+.
T Consensus       105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  183 (434)
T 4b4t_Q          105 EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESK  183 (434)
T ss_dssp             CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            3445689999999999987632      33678899997666 589999999999999876      3444678888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Q 027439          197 LIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       197 ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      ++.. .+++++|..+|++++...
T Consensus       184 ~~~~-~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          184 VYHK-LRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHH-hCcHHHHHHHHHHHHHHh
Confidence            8887 999999999999998764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.78  E-value=5e-05  Score=61.03  Aligned_cols=61  Identities=8%  Similarity=0.006  Sum_probs=54.7

Q ss_pred             ChHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQAD-P-RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       134 d~~eA~~~y~~aLeld-P-~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      ++++++.++++.++.+ | .+.++++++|..++ +.++|++|.++++++++++|+|..+....-
T Consensus        50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            7789999999999999 7 67899999996666 699999999999999999999998876655

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.77  E-value=0.00013  Score=71.07  Aligned_cols=81  Identities=11%  Similarity=0.043  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027439          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAE-EYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ  214 (223)
Q Consensus       136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~-~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fek  214 (223)
                      +.....|++++...|.++.+|..+|.++. ..++.++|. ..|++|+...|.+..++..++.+... .+++++|...|++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~-~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQG-EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence            45678899999999999999999997776 478889997 99999999999999999999987776 9999999999999


Q ss_pred             HHHh
Q 027439          215 AVKA  218 (223)
Q Consensus       215 AL~l  218 (223)
                      ++..
T Consensus       404 ~l~~  407 (679)
T 4e6h_A          404 CIDR  407 (679)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9975

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.76  E-value=4.2e-05  Score=68.04  Aligned_cols=95  Identities=9%  Similarity=0.026  Sum_probs=69.0

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADP--RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNVLSMY--GD  196 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP--~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~----d~~~l~~l--A~  196 (223)
                      .|..|...+++++|+..+++.+..+|  ++..++..++.++. .+++.++|.+.++++...+|+    +..++..+  ++
T Consensus       106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~  184 (310)
T 3mv2_B          106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESY  184 (310)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHH
Confidence            34556667889999999999888887  77888777775555 588999999999998888883    22233333  44


Q ss_pred             HHHHHcC--CHHHHHHHHHHHHHhCCC
Q 027439          197 LIWQSHK--DASRAESYFDQAVKAAPD  221 (223)
Q Consensus       197 ll~~~~G--~~eeAi~~fekAL~l~Pd  221 (223)
                      +.+. .|  ++++|+.+|+++.+..|+
T Consensus       185 v~l~-~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          185 IKFA-TNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHH-HTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHH-hCCccHHHHHHHHHHHHHhCCC
Confidence            4444 45  888999999988776664

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.61  E-value=0.0004  Score=61.50  Aligned_cols=73  Identities=14%  Similarity=0.046  Sum_probs=57.6

Q ss_pred             CCCCHHHHHHHHHHHHHH--h--C------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 027439          149 DPRNPLLLSNYARFLKEA--R--G------DLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSH-----KDASRAESY  211 (223)
Q Consensus       149 dP~n~~~l~nlA~~l~~~--~--g------dyeeA~~~~ekAL~ldP~--d~~~l~~lA~ll~~~~-----G~~eeAi~~  211 (223)
                      +|+++.+++..|..+...  .  +      ...+|...++||+++||+  ++.+|..+|.++.. .     |+.++|.++
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~-vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA-APESFGGGMEKAHTA  226 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH-SCTTTTCCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh-CCCccCCCHHHHHHH
Confidence            456677777777544321  1  2      258899999999999999  78899999966555 4     999999999


Q ss_pred             HHHHHHhCCCC
Q 027439          212 FDQAVKAAPDD  222 (223)
Q Consensus       212 fekAL~l~Pdn  222 (223)
                      |+||++++|+.
T Consensus       227 ferAL~LnP~~  237 (301)
T 3u64_A          227 FEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHCCTT
T ss_pred             HHHHHHhCCCC
Confidence            99999999974

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.53  E-value=0.00031  Score=68.29  Aligned_cols=88  Identities=6%  Similarity=-0.035  Sum_probs=69.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~---d~~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      ++++.|.++|+++++..|+++.+|..++.+.. ..++.+.|..+|++|+...|+   ...+|..+..+-.. .|+.+.+.
T Consensus       484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~-~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~-~G~~~~~~  561 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYFATDGEYINKYLDFLI-YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK-VGSLNSVR  561 (679)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH-TCCSHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCHHHHH
Confidence            45788888888888888888888888887665 468888888888888888773   45666666655555 88888888


Q ss_pred             HHHHHHHHhCCCC
Q 027439          210 SYFDQAVKAAPDD  222 (223)
Q Consensus       210 ~~fekAL~l~Pdn  222 (223)
                      ..++++++..|++
T Consensus       562 ~v~~R~~~~~P~~  574 (679)
T 4e6h_A          562 TLEKRFFEKFPEV  574 (679)
T ss_dssp             HHHHHHHHHSTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            8888888888874

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.00013  Score=63.83  Aligned_cols=91  Identities=14%  Similarity=0.095  Sum_probs=70.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---CC----HHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQA------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP---ND----GNVLS  192 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLel------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP---~d----~~~l~  192 (223)
                      |.+|...|+|++|..++++++..      .+....++...+.++. .+++|++|..++++++...+   +.    ..++.
T Consensus       142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  220 (434)
T 4b4t_Q          142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH-KLRNLAKSKASLTAARTAANSIYCPTQTVAELDL  220 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence            45667779999999999999876      3444678899997776 58999999999999988743   33    23445


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .++.++.. .+++++|..+|.+++..
T Consensus       221 ~~g~~~~~-~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          221 MSGILHCE-DKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHTTS-SSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence            55544444 89999999999999865

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.40  E-value=0.00037  Score=72.93  Aligned_cols=78  Identities=14%  Similarity=0.092  Sum_probs=63.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      .+++++|.+++++     .+++.+|.++|.++. ..|++++|+..|.+|     +|+..+...+.++.. .|++++|+++
T Consensus      1089 i~nldrAiE~Aer-----vn~p~vWsqLAKAql-~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIey 1156 (1630)
T 1xi4_A         1089 IGNLDRAYEFAER-----CNEPAVWSQLAKAQL-QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKY 1156 (1630)
T ss_pred             HhhHHHHHHHHHh-----cCCHHHHHHHHHHHH-hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHH
Confidence            3455555555543     377999999997666 589999999999886     889999999988777 9999999999


Q ss_pred             HHHHHHhCCC
Q 027439          212 FDQAVKAAPD  221 (223)
Q Consensus       212 fekAL~l~Pd  221 (223)
                      |++|.+..++
T Consensus      1157 L~mArk~~~e 1166 (1630)
T 1xi4_A         1157 LQMARKKARE 1166 (1630)
T ss_pred             HHHHHhhccc
Confidence            9999987754

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.39  E-value=0.0017  Score=51.63  Aligned_cols=85  Identities=12%  Similarity=-0.063  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG---DLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g---dyeeA~~~~ekAL~ldP~-d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      ....++.|++-+. +.-++.+.++||+++.. -.   +..+++.+++..+..+|. .-+.++.+|..+++ .|+|++|+.
T Consensus        22 L~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~-S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~   98 (144)
T 1y8m_A           22 LEILRQQVVSEGG-PTATIQSRFNYAWGLIK-STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKR   98 (144)
T ss_dssp             HHHHHHHHHHTTS-TTSCHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHH
T ss_pred             HHHHHHHHHHhcc-CCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHH
Confidence            3444444444312 35678889999977663 33   457899999999999985 45778888877888 999999999


Q ss_pred             HHHHHHHhCCCC
Q 027439          211 YFDQAVKAAPDD  222 (223)
Q Consensus       211 ~fekAL~l~Pdn  222 (223)
                      +.+.+|+.+|+|
T Consensus        99 y~d~lL~~eP~n  110 (144)
T 1y8m_A           99 YVDTLFEHERNN  110 (144)
T ss_dssp             HHHHHHHTCCCC
T ss_pred             HHHHHHhcCCCc
Confidence            999999999987

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.38  E-value=0.00018  Score=66.27  Aligned_cols=70  Identities=11%  Similarity=0.013  Sum_probs=55.5

Q ss_pred             ccccccCCCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQA-----DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILM-----SPNDGNVL  191 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLel-----dP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-----dP~d~~~l  191 (223)
                      -+.+|..+|+|++|+.+|++++++     .|++   +..++|+|..+. .+|+|++|+.+|++|+++     .|+++.+.
T Consensus       346 La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          346 AMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM-GLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            455666789999999999999975     3454   566899996655 699999999999999986     58888776


Q ss_pred             HHHH
Q 027439          192 SMYG  195 (223)
Q Consensus       192 ~~lA  195 (223)
                      ....
T Consensus       425 ~l~~  428 (433)
T 3qww_A          425 EIKQ  428 (433)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.30  E-value=0.00043  Score=64.50  Aligned_cols=81  Identities=14%  Similarity=0.119  Sum_probs=51.4

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH------------
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSM------------  193 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~------------  193 (223)
                      |..+...|.|++|..+|.++        ..|..+|.++. ++++|++|++.+++|     +++.+|..            
T Consensus       129 Gd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~-~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~  194 (449)
T 1b89_A          129 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR  194 (449)
T ss_dssp             --------CTTTHHHHHHHT--------TCHHHHHHHHH-TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHH-HhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHH
Confidence            34555667888888888766        34677776666 578888888888877     23433333            


Q ss_pred             ------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          194 ------------------YGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       194 ------------------lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                                        +.. +|...|++++|+.+|++++.+++.
T Consensus       195 lA~~~~l~L~~~ad~l~~lv~-~Yek~G~~eEai~lLe~aL~le~a  239 (449)
T 1b89_A          195 LAQMCGLHIVVHADELEELIN-YYQDRGYFEELITMLEAALGLERA  239 (449)
T ss_dssp             HHHHTTTTTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred             HHHHHHHHHHhCHhhHHHHHH-HHHHCCCHHHHHHHHHHHhCCcHH
Confidence                              233 344489999999999999988764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.26  E-value=0.0017  Score=52.37  Aligned_cols=83  Identities=17%  Similarity=0.151  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          136 NSTDLYYQKMIQADPR--------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       136 ~eA~~~y~~aLeldP~--------n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      ++.+..|++|+..-|-        .+.+|.+||.+ . ..+|.++|.+.|+.++.+....+.+|..+|.+-.. +|+..+
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~-ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiR-qgnl~k  112 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-K-AIQEPDDARDYFQMARANCKKFAFVHISFAQFELS-QGNVKK  112 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-H-HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-H-HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cccHHH
Confidence            7888999999987765        35778889843 4 46899999999999999988999999999988888 999999


Q ss_pred             HHHHHHHHHHhCCC
Q 027439          208 AESYFDQAVKAAPD  221 (223)
Q Consensus       208 Ai~~fekAL~l~Pd  221 (223)
                      |...+.+|+.+.|.
T Consensus       113 ARkILg~AiG~~~k  126 (161)
T 4h7y_A          113 SKQLLQKAVERGAV  126 (161)
T ss_dssp             HHHHHHHHHHTTCB
T ss_pred             HHHHHHHHhccCCC
Confidence            99999999988774

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.26  E-value=0.00087  Score=52.73  Aligned_cols=85  Identities=12%  Similarity=-0.058  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG---DLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g---dyeeA~~~~ekAL~ldP~-d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      ....++.|++-+ ...-.+.+.++||+++.. ..   +..+++.+++..+..+|. .-+.++.+|..+++ .|+|++|+.
T Consensus        23 L~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~-S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~   99 (134)
T 3o48_A           23 LEILRQQVVSEG-GPTATIQSRFNYAWGLIK-STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKR   99 (134)
T ss_dssp             HHHHHHHHHHTT-GGGSCHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCCChhhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHH
Confidence            344444454433 223357888999977663 33   457899999999999984 46778888877888 999999999


Q ss_pred             HHHHHHHhCCCC
Q 027439          211 YFDQAVKAAPDD  222 (223)
Q Consensus       211 ~fekAL~l~Pdn  222 (223)
                      +.+.+|+..|+|
T Consensus       100 y~d~lL~~eP~N  111 (134)
T 3o48_A          100 YVDTLFEHERNN  111 (134)
T ss_dssp             HHHHHHTTCTTC
T ss_pred             HHHHHHhhCCCC
Confidence            999999999987

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.18  E-value=0.0006  Score=71.42  Aligned_cols=89  Identities=12%  Similarity=0.087  Sum_probs=67.8

Q ss_pred             CccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------------------
Q 027439          124 RWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP------------------  185 (223)
Q Consensus       124 ~gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP------------------  185 (223)
                      ..|..++..++|++|..+|+++        ..|..+|.++. +++++++|++.+++|...++                  
T Consensus      1200 ~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLv-kLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A         1200 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHH-HhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHH
Confidence            4677888899999999999996        46788886666 58999999999999844332                  


Q ss_pred             -------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          186 -------NDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       186 -------~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                             .+++.+..++. +|...|.+++|+.+|++++.++|.+
T Consensus      1271 ~cgl~Iiv~~deLeeli~-yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A         1271 MCGLHIVVHADELEELIN-YYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred             HHHHhhhcCHHHHHHHHH-HHHHcCCHHHHHHHHHHHhccChhH
Confidence                   13333444443 3455999999999999999988754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.09  E-value=0.00044  Score=63.47  Aligned_cols=69  Identities=7%  Similarity=-0.052  Sum_probs=54.6

Q ss_pred             cccccCCCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQA-----DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILM-----SPNDGNVLS  192 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLel-----dP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-----dP~d~~~l~  192 (223)
                      +..|...|+|++|+.+|++++++     .|++   +..++++|..+. .+|++++|+.+|++|+++     .|+++.+..
T Consensus       336 ~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~-~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          336 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL-HQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            44556679999999999999975     3555   456889996555 699999999999999985     588887765


Q ss_pred             HHH
Q 027439          193 MYG  195 (223)
Q Consensus       193 ~lA  195 (223)
                      .+.
T Consensus       415 ~~~  417 (429)
T 3qwp_A          415 LIL  417 (429)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.04  E-value=0.00054  Score=62.39  Aligned_cols=63  Identities=11%  Similarity=0.024  Sum_probs=52.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      .+++++|+.+++++++++|+ ..++..+|.++. ..|++++|++.|++|+.++|..+ .+.....+
T Consensus       290 ~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~-~~G~~~eA~e~~~~AlrL~P~~~-t~~~~~~l  352 (372)
T 3ly7_A          290 KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE-MKGMNREAADAYLTAFNLRPGAN-TLYWIENG  352 (372)
T ss_dssp             HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCSHH-HHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcC-hHHHHhCc
Confidence            58999999999999999975 778888895555 68999999999999999999765 44444444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.80  E-value=0.0045  Score=50.37  Aligned_cols=83  Identities=16%  Similarity=0.063  Sum_probs=64.1

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CC------------
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNP---------LLLSNYARFLKEARGDLLKAEEYCARAILMS---PN------------  186 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~---------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld---P~------------  186 (223)
                      ..+.|+.|+.+...++.+..+++         .++..+|..++. +++|.+|+.+|++||.+.   ++            
T Consensus        32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~s  110 (167)
T 3ffl_A           32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSA  110 (167)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC--------------
T ss_pred             HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCccccccccC
Confidence            35789999999999877654333         378889988885 899999999999987643   11            


Q ss_pred             ----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439          187 ----------DGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (223)
Q Consensus       187 ----------d~~~l~~lA~ll~~~~G~~eeAi~~fekA  215 (223)
                                +.++.+..|.++.. .+++++|+..++.+
T Consensus       111 s~p~s~~~~~e~Elkykia~C~~~-l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          111 STPQSQCLPSEIEVKYKLAECYTV-LKQDKDAIAILDGI  148 (167)
T ss_dssp             ------CCCCHHHHHHHHHHHHHH-TTCHHHHHHHHHTS
T ss_pred             CCcccccccchHHHHHHHHHHHHH-HCCHHHHHHHHhcC
Confidence                      22678888876666 99999999998763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.75  E-value=0.0028  Score=49.30  Aligned_cols=61  Identities=8%  Similarity=0.006  Sum_probs=52.1

Q ss_pred             ChHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQAD-P-RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       134 d~~eA~~~y~~aLeld-P-~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      +..+++.+++..++.+ | .+-..++.+|..++ +.++|++|..+++.+++.+|+|..+.....
T Consensus        53 d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           53 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5567999999999987 5 56778888886666 699999999999999999999998876555

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.57  E-value=0.017  Score=53.53  Aligned_cols=87  Identities=8%  Similarity=-0.030  Sum_probs=61.1

Q ss_pred             ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHh--C--C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          134 GNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEAR--G--D---LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~-n~~~l~nlA~~l~~~~--g--d---yeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      .+..|...|+++....+. +...|..|..+-. ..  +  +   ...+...|++++...|..+.+|..++..+.. .++.
T Consensus       152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~-~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~-~~~~  229 (493)
T 2uy1_A          152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM-ENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG-IGQK  229 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH-TCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh-cCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCH
Confidence            345566666666654333 4556766664322 11  0  0   3456778999999999999999999977766 8899


Q ss_pred             HHHHHHHHHHHHhCCCCC
Q 027439          206 SRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn~  223 (223)
                      ++|...|++|+.. |.++
T Consensus       230 ~~ar~i~erAi~~-P~~~  246 (493)
T 2uy1_A          230 EKAKKVVERGIEM-SDGM  246 (493)
T ss_dssp             HHHHHHHHHHHHH-CCSS
T ss_pred             HHHHHHHHHHHhC-CCcH
Confidence            9999999999988 8763

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.55  E-value=0.0075  Score=47.35  Aligned_cols=63  Identities=10%  Similarity=-0.024  Sum_probs=53.7

Q ss_pred             CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD  196 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~-n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~  196 (223)
                      .+..+++.+++..++.+|. .-+.++.+|..++ +.|+|++|.++++++++..|+|..+......
T Consensus        57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            3677999999999999984 4677888886666 6899999999999999999999998876553

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.47  E-value=0.014  Score=54.08  Aligned_cols=82  Identities=12%  Similarity=0.131  Sum_probs=61.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY  211 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~  211 (223)
                      .++.+.|.+.|+++ +..+....+|...|.+-+...++++.|..+|+++++..|+++..+..++.+... .|+.++|...
T Consensus       299 ~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~-~~~~~~aR~l  376 (493)
T 2uy1_A          299 KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR-IGDEENARAL  376 (493)
T ss_dssp             HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            35678888999988 443345667777775555434478999999999999888888887778876655 7888888888


Q ss_pred             HHHH
Q 027439          212 FDQA  215 (223)
Q Consensus       212 fekA  215 (223)
                      |+++
T Consensus       377 ~er~  380 (493)
T 2uy1_A          377 FKRL  380 (493)
T ss_dssp             HHHS
T ss_pred             HHHH
Confidence            7775

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.47  E-value=0.011  Score=46.95  Aligned_cols=62  Identities=10%  Similarity=-0.009  Sum_probs=52.6

Q ss_pred             CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~-n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      .+..+++.+++..++.+|. .-+.++.+|..++ ++++|++|.++++.+++.+|+|..+.....
T Consensus        56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            3678899999999999985 4567778885566 699999999999999999999998876555

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.84  E-value=0.11  Score=46.69  Aligned_cols=83  Identities=8%  Similarity=-0.073  Sum_probs=64.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNP----------------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~----------------------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~  190 (223)
                      ++.++|...+++|+.+.-...                      .+...++..+. ..|++++|+..+++++..+|-+-.+
T Consensus       129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P~~E~~  207 (388)
T 2ff4_A          129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREPL  207 (388)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            467778888888888753210                      12233443333 5799999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439          191 LSMYGDLIWQSHKDASRAESYFDQAVK  217 (223)
Q Consensus       191 l~~lA~ll~~~~G~~eeAi~~fekAL~  217 (223)
                      +..+-.+++. .|+..+|+..|+++-+
T Consensus       208 ~~~lm~al~~-~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          208 WTQLITAYYL-SDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            9888888888 9999999999998754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.71  E-value=0.18  Score=43.85  Aligned_cols=90  Identities=18%  Similarity=0.160  Sum_probs=70.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------------
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL-------------  197 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l-------------  197 (223)
                      +.++.++|++..+..++.+|.|+.....|-..|. ..|++++|...++.+.+++|........|-.+             
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG   87 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   87 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            4578999999999999999999999988887777 48999999999999999999875443333222             


Q ss_pred             ---------------------HHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          198 ---------------------IWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       198 ---------------------l~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                                           .....|+.++|.+.-.+|++..|.
T Consensus        88 ~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           88 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence                                 111257888888888888877654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.35  E-value=0.031  Score=52.49  Aligned_cols=66  Identities=20%  Similarity=0.251  Sum_probs=50.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLI  198 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll  198 (223)
                      ...+..|..+|++|+.++|++...++.+| ++....++.-+|+.+|.|++......+.+..++..++
T Consensus       165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLa-vla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          165 RNQTSQAESYYRHAAQLVPSNGQPYNQLA-ILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTBSHHHHHHH-HHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCchHHHHH-HHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            34567888888888888888888888888 5554567888888888888887766777777777543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.28  E-value=0.15  Score=47.28  Aligned_cols=81  Identities=14%  Similarity=-0.003  Sum_probs=35.6

Q ss_pred             CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439          133 HGNNSTDLYYQKMIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHKDASRAE  209 (223)
Q Consensus       133 gd~~eA~~~y~~aLeld-P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--P~d~~~l~~lA~ll~~~~G~~eeAi  209 (223)
                      +++++|..+|+++.+.. .-+..+|+.+-..+. +.|+.++|.++|++..+..  | |...+..+-..+.+ .|+.++|.
T Consensus       119 g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~-~g~~d~A~  195 (501)
T 4g26_A          119 DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC-RKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMD-TKNADKVY  195 (501)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCccceehHHHHHHH-HCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhh-CCCHHHHH
Confidence            45555555555554431 112333333332232 3455555555555544432  2 33333334434444 55555555


Q ss_pred             HHHHHHH
Q 027439          210 SYFDQAV  216 (223)
Q Consensus       210 ~~fekAL  216 (223)
                      .+|++.-
T Consensus       196 ~ll~~Mr  202 (501)
T 4g26_A          196 KTLQRLR  202 (501)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=95.25  E-value=0.0078  Score=55.97  Aligned_cols=85  Identities=6%  Similarity=-0.046  Sum_probs=59.6

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA--RGDLLKAEEYCARAILMSP-----NDGNVLSMYGDLIW  199 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~--~gdyeeA~~~~ekAL~ldP-----~d~~~l~~lA~ll~  199 (223)
                      .+|+..|.+++|+.+|++++.+++.+..++..+| .++.+  .++..++++.|...+.+.|     .+...|..+..++.
T Consensus       215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~-il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~  293 (449)
T 1b89_A          215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELA-ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD  293 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH-HHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            4577778888888888888888888888888888 44422  1345555666666666666     67777777776666


Q ss_pred             HHcCCHHHHHHHHH
Q 027439          200 QSHKDASRAESYFD  213 (223)
Q Consensus       200 ~~~G~~eeAi~~fe  213 (223)
                      . .++++.|+..+-
T Consensus       294 ~-~~e~d~A~~tm~  306 (449)
T 1b89_A          294 K-YEEYDNAIITMM  306 (449)
T ss_dssp             H-TTCHHHHHHHHH
T ss_pred             h-hchHHHHHHHHH
Confidence            6 888888776543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.19  E-value=0.044  Score=44.49  Aligned_cols=55  Identities=16%  Similarity=0.187  Sum_probs=46.1

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          162 FLKEARGDLLKAEEYCARAILMSPNDGN---------VLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       162 ~l~~~~gdyeeA~~~~ekAL~ldP~d~~---------~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .++. .+.|+-|+.....++.+..++++         ++..+|+++|. .++|.+|..+|++||+.
T Consensus        29 ~L~d-~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           29 DMAA-AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHH-hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHH
Confidence            5564 68999999999987776554444         78899999999 99999999999999875

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.86  E-value=0.063  Score=43.21  Aligned_cols=59  Identities=14%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS  192 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~  192 (223)
                      +|.++|...|+.++.+.-..+.+|..+|.|-. ++++..+|...+.+|+.+.|.....+-
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi-Rqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFEL-SQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            68899999999999998888999999997766 699999999999999999998776653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.59  E-value=0.12  Score=51.03  Aligned_cols=58  Identities=14%  Similarity=0.060  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439          156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (223)
Q Consensus       156 l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA  215 (223)
                      +..=+.||.. +++|+-|+++.++|+..-|.+...|..+|.+|.. .++++.|+-.+.-.
T Consensus       340 L~~Qa~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence            3344556664 7999999999999999999999999999999888 99999999776543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.11  E-value=0.17  Score=47.42  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .+..+|.... ....+..|..+|.+|+.++|+++..+..+|.+... .++.-+|+.+|.|++..
T Consensus       154 ~l~~LGDL~R-Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          154 CLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSS
T ss_pred             HHHHcccHHH-HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhc
Confidence            4567774444 46789999999999999999999999999976666 89999999999999854

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.05  E-value=0.75  Score=42.55  Aligned_cols=84  Identities=19%  Similarity=0.077  Sum_probs=65.9

Q ss_pred             CCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439          132 NHGNNSTDLYYQKMIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHKDASRA  208 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeld-P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l--dP~d~~~l~~lA~ll~~~~G~~eeA  208 (223)
                      .++.++|.++|+++.+.. .-|..+|+.+-..+. +.|++++|.+++++..+.  .| |...+..+-..+.+ .|+.++|
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~-~g~~~~A  159 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCR-KGDADKA  159 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH-TTCHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHH-CCCHHHH
Confidence            457899999999998764 225667777775666 589999999999998875  35 56666666656677 9999999


Q ss_pred             HHHHHHHHHh
Q 027439          209 ESYFDQAVKA  218 (223)
Q Consensus       209 i~~fekAL~l  218 (223)
                      ...|++..+.
T Consensus       160 ~~l~~~M~~~  169 (501)
T 4g26_A          160 YEVDAHMVES  169 (501)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998765

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.85  E-value=0.15  Score=44.44  Aligned_cols=55  Identities=31%  Similarity=0.414  Sum_probs=51.8

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +.++.++|++.++..|+.+|.|......+..++.. .|++++|.+.++-+.+++|+
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGG
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCch
Confidence            36899999999999999999999999999998888 99999999999999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.32  E-value=0.63  Score=43.69  Aligned_cols=65  Identities=15%  Similarity=-0.008  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHH------------HHHHcCCHHHH
Q 027439          149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAI--------LMSPNDGNVLSMYGDL------------IWQSHKDASRA  208 (223)
Q Consensus       149 dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL--------~ldP~d~~~l~~lA~l------------l~~~~G~~eeA  208 (223)
                      ..++...|.++|..+. ..++++.|+++|.++-        .....+...+..++.+            ++.+.|++++|
T Consensus       677 ~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a  755 (814)
T 3mkq_A          677 DESAEMKWRALGDASL-QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGA  755 (814)
T ss_dssp             TCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH
T ss_pred             hhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHH
Confidence            4567889999996555 5899999999999852        1224455554455433            33336677777


Q ss_pred             HHHHHH
Q 027439          209 ESYFDQ  214 (223)
Q Consensus       209 i~~fek  214 (223)
                      +++|.+
T Consensus       756 ~~~~~~  761 (814)
T 3mkq_A          756 KDLLIK  761 (814)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666655

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.51  E-value=4  Score=33.82  Aligned_cols=57  Identities=18%  Similarity=0.147  Sum_probs=43.9

Q ss_pred             HHHHHhCCHHHHHHHHHHHHH-----------------hCCCCHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          162 FLKEARGDLLKAEEYCARAIL-----------------MSPNDGNV-LSMYGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       162 ~l~~~~gdyeeA~~~~ekAL~-----------------ldP~d~~~-l~~lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      +++ .+++|.+|+..++..++                 .||.|.+. +..+|.++.+ .|+.++|+.+|.+.....|
T Consensus        71 Cy~-klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq-~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A           71 CYK-KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTL-SGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCC
T ss_pred             HHH-HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHH-hcCHHHhhhHhhhhcCCcc
Confidence            344 58999999999999993                 24556654 5567766666 9999999999999877654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.22  E-value=0.84  Score=37.12  Aligned_cols=78  Identities=14%  Similarity=0.060  Sum_probs=51.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH------
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNVLSMYGDL------  197 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--------P~d~~~l~~lA~l------  197 (223)
                      .|+++.|.+..++.     ++...|..+|.... .+++++-|+++|+++-..+        -.|.+-+..++.+      
T Consensus        18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~   91 (177)
T 3mkq_B           18 YGNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTRED   91 (177)
T ss_dssp             TTCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCcc
Confidence            46788888877654     67889999996665 5899999999988653321        1122222233222      


Q ss_pred             ------HHHHcCCHHHHHHHHHHH
Q 027439          198 ------IWQSHKDASRAESYFDQA  215 (223)
Q Consensus       198 ------l~~~~G~~eeAi~~fekA  215 (223)
                            ++..+|+++++++.|.+.
T Consensus        92 ~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           92 FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHC
Confidence                  333378888888888663

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.07  E-value=0.56  Score=42.50  Aligned_cols=93  Identities=12%  Similarity=0.042  Sum_probs=64.5

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHH---HHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNV---LSMYGD  196 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--P~d~~~---l~~lA~  196 (223)
                      -|+.|...||+++|.++|.++.......   ..++....+.... .+++..|..++.+|..+.  ..++..   +..+..
T Consensus       137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g  215 (429)
T 4b4t_R          137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG  215 (429)
T ss_dssp             HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence            4566777899999999999998764332   4555555555554 699999999999996552  223332   233333


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Q 027439          197 LIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       197 ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      +++...++|.+|..+|..++..
T Consensus       216 l~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          216 IHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHHHHHHhcc
Confidence            4444489999999999887654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=89.39  E-value=1.8  Score=35.17  Aligned_cols=54  Identities=20%  Similarity=0.159  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA  215 (223)
Q Consensus       152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA  215 (223)
                      ++...+.+|    ...|+++.|.++++.+     ++...|..+|..... +|+++-|+..|+++
T Consensus         7 D~~~rF~LA----L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            7 DPHIRFDLA----LEYGNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQ   60 (177)
T ss_dssp             CHHHHHHHH----HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred             ChHHHHHHH----HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHh
Confidence            456666666    3579999999998765     688999999999888 99999999999885

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.04  E-value=0.93  Score=41.18  Aligned_cols=91  Identities=14%  Similarity=0.068  Sum_probs=61.9

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCC---C---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCHHH---HHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPR---N---PLLLSNYARFLKEARGDLLKAEEYCARAILMS---PNDGNV---LSMY  194 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~---n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld---P~d~~~---l~~l  194 (223)
                      .+|...++|.+|.+++.++++.-..   .   ..++..-..++. ..+++.++..+|.+|....   +.+|.+   +...
T Consensus       107 ~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~  185 (394)
T 3txn_A          107 ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-ALSNLPKARAALTSARTTANAIYCPPKVQGALDLQ  185 (394)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence            4666778999999999998874211   2   233333343344 5799999999999996643   233432   3344


Q ss_pred             HHHHHH-HcCCHHHHHHHHHHHHHh
Q 027439          195 GDLIWQ-SHKDASRAESYFDQAVKA  218 (223)
Q Consensus       195 A~ll~~-~~G~~eeAi~~fekAL~l  218 (223)
                      +.+++. ..++|.+|..+|-.++..
T Consensus       186 ~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          186 SGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhccCHHHHHHHHHHHHhc
Confidence            445665 599999999999988743

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.92  E-value=0.75  Score=41.11  Aligned_cols=66  Identities=8%  Similarity=-0.012  Sum_probs=52.3

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL-------MSPNDGNVLSMYGDL  197 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~-------ldP~d~~~l~~lA~l  197 (223)
                      ...+++.+|+..+++++..+|.+-.++..+-.+++ +.|+..+|++.|+++-.       ++| .+.....+..+
T Consensus       182 l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~-~~Gr~~~Al~~y~~~r~~L~~eLG~~P-~~~l~~l~~~i  254 (388)
T 2ff4_A          182 IACGRASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKTTLADDLGIDP-GPTLRALNERI  254 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHSCCC-CHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHH
Confidence            34689999999999999999999999988887777 58999999999888754       345 45454444433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=85.27  E-value=2  Score=40.14  Aligned_cols=53  Identities=11%  Similarity=-0.065  Sum_probs=31.3

Q ss_pred             ccccccCCCChHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQ--------ADPRNPLLLSNYARFLKEARGDLLKAEEYCA  178 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLe--------ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~e  178 (223)
                      .|+.+...++++.|+.+|.++-.        ....+...+..++.... ..+++..|..+|.
T Consensus       687 la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~-~~~~~~~A~~~~~  747 (814)
T 3mkq_A          687 LGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAE-TTGKFNLAFNAYW  747 (814)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHH-HcCchHHHHHHHH
Confidence            45566677899999999988521        22445555555553333 3555555555443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=84.26  E-value=7.1  Score=40.04  Aligned_cols=86  Identities=7%  Similarity=-0.135  Sum_probs=64.0

Q ss_pred             cCCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcC
Q 027439          130 PNNHGNNSTDLYYQKMIQA----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHK  203 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLel----dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--P~d~~~l~~lA~ll~~~~G  203 (223)
                      .+.|+.++|..+|+++-+.    -.-|..+|+.+-..+. +.|++++|.++|++..+..  | |...+..+-..+.+ .|
T Consensus       138 cK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glc-k~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK-~G  214 (1134)
T 3spa_A          138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA-RQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGR-QD  214 (1134)
T ss_dssp             HHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH-HT
T ss_pred             HhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHh-CC
Confidence            3458999999999876543    2335777777776666 5899999999999998754  5 55566666656666 67


Q ss_pred             C-HHHHHHHHHHHHHh
Q 027439          204 D-ASRAESYFDQAVKA  218 (223)
Q Consensus       204 ~-~eeAi~~fekAL~l  218 (223)
                      + .++|..+|++....
T Consensus       215 ~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          215 QDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHc
Confidence            6 57899999998765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=84.24  E-value=2.3  Score=41.89  Aligned_cols=88  Identities=14%  Similarity=0.152  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHH
Q 027439          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-GDLLKAEEYCARAILM--------SPND----------GNVLSMYG  195 (223)
Q Consensus       135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~-gdyeeA~~~~ekAL~l--------dP~d----------~~~l~~lA  195 (223)
                      ++.|+.++++..+.+|.+...+......+.... .+--+|+....++++.        .+.+          ...+..-+
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa  344 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT  344 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence            477999999999999987654422221121111 2446677777777642        2333          23555566


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 027439          196 DLIWQSHKDASRAESYFDQAVKAAPDDW  223 (223)
Q Consensus       196 ~ll~~~~G~~eeAi~~fekAL~l~Pdn~  223 (223)
                      .++.. .++++-|+..-++|+.+.|++|
T Consensus       345 ~FLl~-K~~~elAL~~Ak~AV~~aPseF  371 (754)
T 4gns_B          345 NFLLN-RGDYELALGVSNTSTELALDSF  371 (754)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHhc-cCcHHHHHHHHHHHHhcCchhh
Confidence            66676 8999999999999999999876

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.13  E-value=7.3  Score=35.36  Aligned_cols=91  Identities=7%  Similarity=0.038  Sum_probs=60.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCCCCHH----HHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQA----DPRN--PLLLSNYARFLKEARGDLLKAEEYCARAIL---MSPNDGN----VLS  192 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLel----dP~n--~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~---ldP~d~~----~l~  192 (223)
                      +..|+..|++.+|...++.....    .+..  ..++..-.+.+. ..+++.+|..++.++..   ..+.++.    .+.
T Consensus       144 a~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l-~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~  222 (445)
T 4b4t_P          144 VEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI-LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN  222 (445)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence            35566778999999999987643    1111  344555554555 47999999999998732   2344443    334


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKA  218 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l  218 (223)
                      .++ .++...++|.+|-.+|..++..
T Consensus       223 ~~~-~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          223 LLV-KISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHH-HHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHhhhHHHHHHHHHHHHhc
Confidence            444 3444489999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.001
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.001

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
              + I+A P++  L S++   L    GD  +A+E   ++I + P      S    L+  
Sbjct: 18  LLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 76

Query: 201 SHKDASRAESYFDQAVKAAPDDW 223
           +      A+      V    ++ 
Sbjct: 77  AQARKDFAQGAATAKVLGENEEL 99

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
              + I+  P      S     +K A+     A+      +L    +     +    +  
Sbjct: 52  QLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSF-NLSM 110

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
             +D  +      Q  +   + 
Sbjct: 111 VSQDYEQVSELALQIEELRQEK 132

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW 223
           + G L +A E    AI  SP D ++ S + +L      D  RA+    Q++K  P+  
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIEL-LCIDGDFERADEQLMQSIKLFPEYL 64

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 34/115 (29%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKE---------------------------------AR 167
            Y++ I+  P  P    N A  LKE                                  +
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318

Query: 168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
           G++ +A     +A+ + P      S     + Q       A  ++ +A++ +P  
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
           +  ++ + +P N  +L   +    +    L ++  +   AI  +P      S  G++  +
Sbjct: 21  HCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79

Query: 201 SH 202
             
Sbjct: 80  RG 81

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y+K ++  P      SN A  L++ +G L +A  +   AI +SP   +  S  G+ + +
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW 223
            GD   AE +C +     P++  VL +    I    +   R+  +   A+K  P   
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLA 67

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y + +   P + ++  N A    E +G +  A +   RAI + P+  +      +   +
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYE-QGLIDLAIDTYRRAIELQPHFPDAYCNLAN-ALK 282

Query: 201 SHKDASRAESYFDQAVKAAPDDW 223
                + AE  ++ A++  P   
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHA 305

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 3/85 (3%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEA--RGDLLKAEEYCARAILMSPNDGNVLSMYG-DL 197
            +Q    A   +      YA  L       D+ K        +     +     ++   +
Sbjct: 21  KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80

Query: 198 IWQSHKDASRAESYFDQAVKAAPDD 222
                K+  +A  Y    ++  P +
Sbjct: 81  GNYRLKEYEKALKYVRGLLQTEPQN 105

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 142 YQKMIQADPRNPLLLSNYARFLKEA-----RGDLLKAEEYCARAILMSPNDGNVLSMYGD 196
           Y K  Q +  NPL   ++ +  +E       GDL  A      A+   P         G 
Sbjct: 4   YDKGYQFEEENPL--RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLG- 60

Query: 197 LIWQSHKDASRAESYFDQAVKAAPDDW 223
                ++    A S   + ++  PD+ 
Sbjct: 61  TTQAENEQELLAISALRRCLELKPDNQ 87

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS 184
            G+   N + +      Y++ ++  P       N         G   +A E+   A+ M 
Sbjct: 212 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAVEHFLEALNMQ 270

Query: 185 PNDGNVLSMYGDL---IWQSHKDASRAESYFDQAVKAAPDD 222
                     G +   IW + + A       D    A   D
Sbjct: 271 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 311

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)

Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200
            Y + I  +P   +  +N             +A   C RA+ +           G     
Sbjct: 26  CYGRAITRNPLVAVYYTNR-ALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG-QCQL 83

Query: 201 SHKDASRAESYFDQAVKAAPDD 222
             +    A +   +A   A + 
Sbjct: 84  EMESYDEAIANLQRAYSLAKEQ 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.63
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.55
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.48
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.47
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.44
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.43
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.41
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.37
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.36
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.34
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.34
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.34
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.31
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.24
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.09
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.05
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.99
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.99
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.98
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.95
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.95
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.95
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.93
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.89
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.86
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.82
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.78
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.67
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.67
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.61
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.57
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.55
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.49
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.47
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.44
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.98
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.95
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.92
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.85
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.52
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.44
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.43
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.18
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.94

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.8e-16  Score=116.40  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=87.4

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+...++|++|+.+|+++|+.+|.++.+|.++|.++. .++++++|+..|+++++++|+++.+++.+|.++.. .|+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHH-ccCHH
Confidence            44566789999999999999999999999999996666 58999999999999999999999999999987777 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+..|+++++++|++
T Consensus        89 ~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          89 EAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999999999986

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.9e-16  Score=125.09  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=87.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...|+|++|+.+|+++++++|.++.+|.++|.++. ..++|++|+.+|++|+.++|+++.+|..+|.+++. +|++
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~~~   88 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESY   88 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCH
Confidence            456777899999999999999999999999999996655 69999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|++|++++|++
T Consensus        89 ~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          89 DEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            99999999999988753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-15  Score=118.30  Aligned_cols=95  Identities=15%  Similarity=0.045  Sum_probs=88.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...++|++|+.+|+++++++|+++.+|.++|.++. ..+++++|+..|+++++++|++..++..+|.++.. .|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cCCH
Confidence            345677899999999999999999999999999996666 58999999999999999999999999999988887 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|+++++++|+|
T Consensus        95 ~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          95 RAALRDYETVVKVKPHD  111 (159)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.4e-14  Score=117.89  Aligned_cols=95  Identities=13%  Similarity=0.116  Sum_probs=88.6

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.+|...|++++|+.+|+++++++|+++.++.++|.++. .++++++|+.+|+++++++|+++.++..+|.+++. .|++
T Consensus        44 G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~  121 (259)
T d1xnfa_          44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRD  121 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-HhhH
Confidence            456778899999999999999999999999999996665 68999999999999999999999999999988877 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|+++++.+|++
T Consensus       122 ~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         122 KLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhcccc
Confidence            99999999999999975

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.50  E-value=4.3e-14  Score=104.87  Aligned_cols=89  Identities=12%  Similarity=-0.011  Sum_probs=82.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..+...|++++|+.+|+++++.+|+++.+|.++|.++. +.+++++|+.+|++|++++|+++.++..+|.++.. .|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHH-CCCH
Confidence            345667799999999999999999999999999996665 68999999999999999999999999999987777 9999


Q ss_pred             HHHHHHHHHHH
Q 027439          206 SRAESYFDQAV  216 (223)
Q Consensus       206 eeAi~~fekAL  216 (223)
                      ++|++.|+|.|
T Consensus       101 ~~A~~~l~~~l  111 (112)
T d1hxia_         101 NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.48  E-value=3.4e-14  Score=110.47  Aligned_cols=96  Identities=18%  Similarity=0.191  Sum_probs=83.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---------ARGDLLKAEEYCARAILMSPNDGNVLSMYGD  196 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~---------~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~  196 (223)
                      ++.|++.+.|++|+..|+++++++|+|+.++.++|.++..         ..+.+++|+..|++|++++|+++.++..+|.
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   83 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence            3456667789999999999999999999999999987763         2356789999999999999999999999998


Q ss_pred             HHHHHcC-----------CHHHHHHHHHHHHHhCCCC
Q 027439          197 LIWQSHK-----------DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       197 ll~~~~G-----------~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++.. +|           ++++|+.+|++|++++|+|
T Consensus        84 ~y~~-~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          84 AYTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHH-cccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence            8765 43           4789999999999999986

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-13  Score=109.34  Aligned_cols=95  Identities=19%  Similarity=0.160  Sum_probs=84.6

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---------------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~  190 (223)
                      |..|...++|++|+.+|+++++..|..               ..++.++|.++. .+++|++|+.+|++||.++|+++.+
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a   98 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKG   98 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhccccchhh
Confidence            345666789999999999999998764               356788995555 6899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       191 l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++.+|.+++. .|++++|+..|+++++++|+|
T Consensus        99 ~~~~g~~~~~-~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1          99 LSRRGEAHLA-VNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSC
T ss_pred             hHHHHHHHHH-hhhHHHHHHHHHHHHHhCCCC
Confidence            9999988888 999999999999999999987

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.5e-14  Score=107.98  Aligned_cols=91  Identities=12%  Similarity=0.079  Sum_probs=80.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE--ARGDLLKAEEYCARAILMSPND--GNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~--~~gdyeeA~~~~ekAL~ldP~d--~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+++++|++.|+++++++|.++.++++||.++..  ..+++++|+.+|++++..+|++  ..+++.+|.+++. .|+++
T Consensus        11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~-~g~~~   89 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYE   89 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-HhhhH
Confidence            34689999999999999999999999999977752  1346778999999999998865  4589999988777 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+.+|+++++++|+|
T Consensus        90 ~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          90 KALKYVRGLLQTEPQN  105 (122)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCcCC
Confidence            9999999999999986

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.3e-14  Score=105.21  Aligned_cols=94  Identities=18%  Similarity=0.304  Sum_probs=82.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-------VLSMYGDLI  198 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~-------~l~~lA~ll  198 (223)
                      |..|...++|++|+.+|+++++++|+++.++.++|.++. ++++|++|++.|++||+++|++..       ++..+|.++
T Consensus        11 G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            456677899999999999999999999999999997776 589999999999999999998865       455566566


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Q 027439          199 WQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       199 ~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      .. .+++++|+.+|++++..+++
T Consensus        90 ~~-~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          90 FK-EEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHCCC
T ss_pred             HH-hCCHHHHHHHHHHHHhcCCC
Confidence            66 89999999999999988764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.9e-13  Score=114.63  Aligned_cols=95  Identities=14%  Similarity=0.047  Sum_probs=88.0

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |.++...+++++|+.+|+++++.+|+++.+|.++|.++. .++++++|+.+|+++++++|+++.++..+|.+++. .|++
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~  256 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAH  256 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-CCCH
Confidence            455667789999999999999999999999999996666 68999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+.+|++|+.++|++
T Consensus       257 ~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         257 REAVEHFLEALNMQRKS  273 (323)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCcC
Confidence            99999999999998875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.43  E-value=5e-13  Score=104.06  Aligned_cols=94  Identities=14%  Similarity=0.042  Sum_probs=83.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRN----------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n----------------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~  190 (223)
                      ..+...++|.+|+.+|+++++..+..                ..++.|+|.+++ +++++++|+.+|++||+++|++..+
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~ka  103 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKA  103 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-Hhcccchhhhhhhccccccchhhhh
Confidence            34556789999999999999876543                246788996666 6899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       191 l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++.+|.+++. .|++++|+..|+++++++|+|
T Consensus       104 ~~~~g~~~~~-lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1         104 LYKLGVANMY-FGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHhHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence            9999988888 999999999999999999986

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=3.1e-13  Score=106.13  Aligned_cols=94  Identities=17%  Similarity=0.128  Sum_probs=83.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQA----------------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLel----------------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~  190 (223)
                      ..+...++|++|+.+|+++++.                +|.+..++.++|.++. .+++|++|+..|++||+++|+++.+
T Consensus        35 ~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a  113 (169)
T d1ihga1          35 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKA  113 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhH
Confidence            3445668999999999999863                5677788999996655 6899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       191 l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++.+|.++.. .|++++|+..|+++++++|+|
T Consensus       114 ~~~~g~~~~~-l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1         114 LYRRAQGWQG-LKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHhHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence            9999988888 999999999999999999986

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.37  E-value=2.1e-12  Score=101.61  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=82.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV  190 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---------------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~  190 (223)
                      |..+...++|.+|+.+|++++...|..               ..++.|+|.+++ .+++|++|+.+|++++.++|++..+
T Consensus        22 G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a  100 (168)
T d1kt1a1          22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKG  100 (168)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHH
Confidence            344566789999999999999765432               356788996666 6999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       191 l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++.+|.++.. .|++++|+..|+++++++|+|
T Consensus       101 ~~~~~~~~~~-l~~~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1         101 LYRRGEAQLL-MNEFESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence            9999988888 999999999999999999986

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.8e-12  Score=104.51  Aligned_cols=91  Identities=11%  Similarity=0.041  Sum_probs=80.7

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..+...++|++|+..|++   +.|.++.+|+++|.+++ .+|++++|+.+|++||+++|+++.++..+|.+++. +|+++
T Consensus        13 ~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hccHH
Confidence            345567899999999986   57778999999996666 69999999999999999999999999999988877 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+..|++|+...+.|
T Consensus        88 ~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHhCccC
Confidence            9999999999876643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.7e-12  Score=106.75  Aligned_cols=94  Identities=14%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      +.+...|+|++|+++|+++++.+|+++.++..+|.++. .++++++|+.+|+++++++|+++.++..+|.++.. .|+++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~-~g~~~   84 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE-RGQLQ   84 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhh-hcccc
Confidence            44566789999999999999999999999999997666 58999999999999999999999999999988887 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      +|+..|++++..+|.+
T Consensus        85 ~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          85 EAIEHYRHALRLKPDF  100 (388)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             cccccccccccccccc
Confidence            9999999999988764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.9e-12  Score=106.37  Aligned_cols=95  Identities=13%  Similarity=0.100  Sum_probs=87.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      |..|...|++++|+.+|+++++.+|+++.+|..+|.++. .++++++|+.+|++|++++|++..++..+|.++.. .+++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~  103 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQ  103 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHhhhccccccccccccccccccc-cccc
Confidence            344567799999999999999999999999999996666 58999999999999999999999999999988877 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|++++..+|++
T Consensus       104 ~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_         104 RQACEILRDWLRYTPAY  120 (323)
T ss_dssp             HHHHHHHHHHHHTSTTT
T ss_pred             cccccchhhHHHhccch
Confidence            99999999999998864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.3e-12  Score=112.66  Aligned_cols=94  Identities=14%  Similarity=0.112  Sum_probs=82.5

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      ++...+.+++|+++|+++|+++|.+..+|.++|.++....+++++|+.+++++++++|++..+|..+|.++.. .|++++
T Consensus        52 ~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l~~~~e  130 (315)
T d2h6fa1          52 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQ  130 (315)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTT
T ss_pred             HHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-hccHHH
Confidence            4455678899999999999999999999999997766423469999999999999999999999999987776 999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 027439          208 AESYFDQAVKAAPDD  222 (223)
Q Consensus       208 Ai~~fekAL~l~Pdn  222 (223)
                      |+.+|+++++++|+|
T Consensus       131 Al~~~~kal~~dp~n  145 (315)
T d2h6fa1         131 ELEFIADILNQDAKN  145 (315)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHhhhhhhhhcc
Confidence            999999999999987

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2e-12  Score=107.61  Aligned_cols=88  Identities=16%  Similarity=0.218  Sum_probs=57.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF  212 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f  212 (223)
                      +++++|+++|++++...|.+..++..++.++. ..+++++|+.+|+++++++|+++.++..+|.+++. .|++++|+.+|
T Consensus       285 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  362 (388)
T d1w3ba_         285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHY  362 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCHHHHHHH
T ss_pred             CCHHHHHHHHHhhhccCCccchhhhHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            34444444444444444444444444443333 35677777777777877788888777778776666 78888888888


Q ss_pred             HHHHHhCCCC
Q 027439          213 DQAVKAAPDD  222 (223)
Q Consensus       213 ekAL~l~Pdn  222 (223)
                      ++|++++|++
T Consensus       363 ~~al~l~P~~  372 (388)
T d1w3ba_         363 KEAIRISPTF  372 (388)
T ss_dssp             HHHHTTCTTC
T ss_pred             HHHHHhCCCC
Confidence            8888777765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-11  Score=99.67  Aligned_cols=94  Identities=11%  Similarity=0.039  Sum_probs=83.6

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----------------HH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND----------------GN  189 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d----------------~~  189 (223)
                      |.+|...|++++|+.+|+++++++|+++.+|.++|.+++ .+++|++|+..|++|+...+.+                ..
T Consensus        43 G~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e  121 (192)
T d1hh8a_          43 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE  121 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred             HHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH-hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHH
Confidence            567788899999999999999999999999999996666 6999999999999999876654                47


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                      +++.+|.++.. .+++++|++.|++|+.+.|+
T Consensus       122 ~~~n~a~~~~~-~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         122 VLYNIAFMYAK-KEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCC
Confidence            78899977666 99999999999999998775

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=6.5e-12  Score=108.11  Aligned_cols=87  Identities=15%  Similarity=0.113  Sum_probs=81.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD  213 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fe  213 (223)
                      ++++|+.+|+++++++|++..+|.++|.++. .++++++|+++|+++++++|++..+|..+|.++.. .+++++|+..|+
T Consensus        93 ~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~-~~~~~~Al~~~~  170 (315)
T d2h6fa1          93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYVD  170 (315)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence            6899999999999999999999999996555 68999999999999999999999999999988887 999999999999


Q ss_pred             HHHHhCCCC
Q 027439          214 QAVKAAPDD  222 (223)
Q Consensus       214 kAL~l~Pdn  222 (223)
                      ++++++|+|
T Consensus       171 ~al~~~p~n  179 (315)
T d2h6fa1         171 QLLKEDVRN  179 (315)
T ss_dssp             HHHHHCTTC
T ss_pred             HHHHHCCcc
Confidence            999999986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=6.2e-11  Score=95.83  Aligned_cols=91  Identities=14%  Similarity=0.146  Sum_probs=79.6

Q ss_pred             cCCCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          130 PNNHGNNSTDLYYQKMIQAD----PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeld----P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      ....+++.|+..+++++...    +..+.++.++|.++. .+|++++|+..|++|+.++|+++.++..+|.++.. .|++
T Consensus        10 ~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~-~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~   87 (259)
T d1xnfa_          10 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNF   87 (259)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCH
T ss_pred             cccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHH
Confidence            34556788999999999753    345679999996665 69999999999999999999999999999987777 9999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 027439          206 SRAESYFDQAVKAAPDD  222 (223)
Q Consensus       206 eeAi~~fekAL~l~Pdn  222 (223)
                      ++|+..|+++++++|++
T Consensus        88 ~~A~~~~~~al~~~p~~  104 (259)
T d1xnfa_          88 DAAYEAFDSVLELDPTY  104 (259)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHhhhhhhHHHHHHhhh
Confidence            99999999999999986

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.09  E-value=3.3e-11  Score=93.35  Aligned_cols=92  Identities=8%  Similarity=-0.042  Sum_probs=76.7

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRN------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---------  186 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n------------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~---------  186 (223)
                      .+...|+|++|+..|+++++++|.+            +.++.++|.++. .+|+|++|+..|++++.+.|.         
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~~~   96 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEG   96 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhccccccccccccc
Confidence            3445689999999999999998875            467899997766 589999999999999987542         


Q ss_pred             --CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439          187 --DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD  221 (223)
Q Consensus       187 --d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd  221 (223)
                        ...++.++|.++.. .|++++|+..|++|+++.|+
T Consensus        97 ~~~~~a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          97 KLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHH
Confidence              23467889987777 99999999999999998654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.6e-10  Score=88.27  Aligned_cols=74  Identities=14%  Similarity=0.022  Sum_probs=67.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      +.+|...++|++|+.+++++|+++|+++.++.++|.+++ .+++|++|+..|+++++++|+|+.+...++.+...
T Consensus        69 a~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          69 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            456778899999999999999999999999999997777 58999999999999999999999999999977544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.2e-10  Score=80.73  Aligned_cols=71  Identities=14%  Similarity=0.143  Sum_probs=61.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN-------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n-------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      |..+...++|.+|+..|++|+++.|.+       +.++.++|.+++ +.|++++|+.+|+++++++|+++.++.+++.+
T Consensus        12 G~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~   89 (95)
T d1tjca_          12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKYF   89 (95)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            445667889999999999999986554       688999996666 69999999999999999999999999998843

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.99  E-value=5.8e-10  Score=86.91  Aligned_cols=74  Identities=14%  Similarity=0.051  Sum_probs=66.9

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      |.+|...+++++|+..|+++++++|+++.+|.++|.++. .++++++|+..|++|++++|++..+...+..+...
T Consensus        84 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1          84 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  157 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            356777899999999999999999999999999997777 58999999999999999999999999988876544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.98  E-value=9.2e-10  Score=86.06  Aligned_cols=90  Identities=10%  Similarity=-0.022  Sum_probs=74.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA  205 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~  205 (223)
                      +.+|...+++++|+.+|+++++++|.+..++.++|.++. .+++|++|+..|++++.++|+++.++..++.+... ...+
T Consensus        71 a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~-~~~~  148 (168)
T d1kt1a1          71 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK-AKEH  148 (168)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHhH
Confidence            456778899999999999999999999999999997777 58999999999999999999999999999977555 3333


Q ss_pred             -HHHHHHHHHHHH
Q 027439          206 -SRAESYFDQAVK  217 (223)
Q Consensus       206 -eeAi~~fekAL~  217 (223)
                       ++....|.+.+.
T Consensus       149 ~e~~kk~~~~~f~  161 (168)
T d1kt1a1         149 NERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence             344455444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=1.6e-09  Score=84.36  Aligned_cols=69  Identities=13%  Similarity=0.019  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++..+...|..++ ..|+|++|+.+|++||+++|+++.+|..+|.++.. .|++++|+.+|++|++++|++
T Consensus         3 ~a~~l~~~Gn~~~-~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~   71 (201)
T d2c2la1           3 SAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQS   71 (201)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTC
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCc
Confidence            4566778997777 58999999999999999999999999999988777 999999999999999999986

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2e-09  Score=77.01  Aligned_cols=68  Identities=13%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d-------~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ++-++++|..++ .+++|++|+..|++|+++.|.+       ..++..+|.+++. .|++++|+.+|+++++++|++
T Consensus         5 addc~~lG~~~~-~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~   79 (95)
T d1tjca_           5 AEDSFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEH   79 (95)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCC
Confidence            455679997777 5899999999999999986654       6789999988888 999999999999999999986

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.9e-09  Score=82.93  Aligned_cols=88  Identities=14%  Similarity=-0.051  Sum_probs=73.6

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HcCC
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ-SHKD  204 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~-~~G~  204 (223)
                      |.+|...+++++|+..|+++++++|++..++.++|.++. ..|++++|+..|+++++++|+++.++..++.+... ..+.
T Consensus        51 g~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~-~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  129 (159)
T d1a17a_          51 SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA  129 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999999997777 58999999999999999999999999888766322 1455


Q ss_pred             HHHHHHHHHH
Q 027439          205 ASRAESYFDQ  214 (223)
Q Consensus       205 ~eeAi~~fek  214 (223)
                      +++|+...+.
T Consensus       130 ~~~a~~~~~~  139 (159)
T d1a17a_         130 FERAIAGDEH  139 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhCcHH
Confidence            6677655443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.2e-09  Score=80.77  Aligned_cols=71  Identities=10%  Similarity=-0.038  Sum_probs=64.5

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      |.+|...+++++|+..|+++++++|+++.+|.++|.++. .++++++|+..|+++++++|+++.++..++.+
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          44 SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cccccccccccccchhhhhHHHhccchhhHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            345667799999999999999999999999999996666 69999999999999999999999999988865

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.89  E-value=1.6e-09  Score=83.65  Aligned_cols=74  Identities=18%  Similarity=0.077  Sum_probs=66.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      |.+|...+++++|+.+|+++++++|.+..+|.++|.++. .++++++|+..|+++++++|+|..+...+..+..+
T Consensus        74 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          74 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            456778899999999999999999999999999997777 58999999999999999999999999888865443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.9e-09  Score=79.79  Aligned_cols=67  Identities=10%  Similarity=0.166  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ..+.++|..++ ..++|++|+.+|+++|.++|+++.++..+|.+++. .|++++|+..|++|++++|++
T Consensus         5 ~~~k~~G~~~~-~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           5 LKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCccc
Confidence            34568897777 58999999999999999999999999999988888 999999999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.86  E-value=9.2e-09  Score=75.32  Aligned_cols=65  Identities=12%  Similarity=0.017  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       156 l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.++|..++ ..|++++|+.+|+++++.+|+++.++..+|.++.. .+++++|+.+|+++++++|++
T Consensus        19 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          19 PMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHH-HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhccccccccccccc
Confidence            457785555 58999999999999999999999999999988777 999999999999999999986

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.82  E-value=2e-08  Score=85.04  Aligned_cols=92  Identities=17%  Similarity=0.150  Sum_probs=79.4

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL------------  197 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l------------  197 (223)
                      ...|++++|++.|+++++.+|+|+.++.+++.++. +.|++++|+..|+++++++|++..++..++.+            
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence            35689999999999999999999999999997766 58999999999999999999998887777654            


Q ss_pred             ----------------------HHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          198 ----------------------IWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       198 ----------------------l~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                                            .....|++++|+..++++++..|+.
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                                  1222688999999999999988763

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.78  E-value=1.8e-08  Score=80.32  Aligned_cols=86  Identities=8%  Similarity=-0.072  Sum_probs=75.9

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNP----------------------LLLSNYARFLKEARGDLLKAEEYCARAILMSPND  187 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~----------------------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d  187 (223)
                      ...|++++|+.+|.+++++.+.+.                      .++.+++.++. .+|++++|+.+|++++.++|.+
T Consensus        22 ~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g~~~~Al~~~~~al~~~P~~  100 (179)
T d2ff4a2          22 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYR  100 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHhCCcc
Confidence            446799999999999999987542                      46778886666 5899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439          188 GNVLSMYGDLIWQSHKDASRAESYFDQAVK  217 (223)
Q Consensus       188 ~~~l~~lA~ll~~~~G~~eeAi~~fekAL~  217 (223)
                      ..+|..++.+++. .|++.+|+..|+++..
T Consensus       101 e~~~~~l~~al~~-~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2         101 EPLWTQLITAYYL-SDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Confidence            9999999988888 9999999999999854

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=7.3e-09  Score=94.00  Aligned_cols=91  Identities=12%  Similarity=0.069  Sum_probs=68.1

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ..|...+++++|+..|++++..+|.  .++.++|..+. .+++|++|+.+|++|+.++|+++.++..+|.++.. .|++.
T Consensus       128 ~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~~~~  203 (497)
T d1ya0a1         128 IISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHL  203 (497)
T ss_dssp             ---------------CCHHHHHHHH--HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cCCHH
Confidence            4445667899999999999988875  57788996665 58999999999999999999999999999977776 99999


Q ss_pred             HHHHHHHHHHHhCCC
Q 027439          207 RAESYFDQAVKAAPD  221 (223)
Q Consensus       207 eAi~~fekAL~l~Pd  221 (223)
                      +|+.+|.||+..+|.
T Consensus       204 ~A~~~y~ral~~~~~  218 (497)
T d1ya0a1         204 TTIFYYCRSIAVKFP  218 (497)
T ss_dssp             HHHHHHHHHHSSSBC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999998775

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=1.8e-08  Score=84.32  Aligned_cols=96  Identities=13%  Similarity=0.016  Sum_probs=68.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSM  193 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~  193 (223)
                      |.+|...+++++|+.+|++++++.+.+      ..++.++|..+....+++++|+++|++|+.+.+.+      ..++..
T Consensus        84 g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~  163 (290)
T d1qqea_          84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK  163 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Confidence            456677778888888888888776554      45667777555433588888888888887764322      345677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          194 YGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       194 lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +|.++.. .|+|++|+.+|++++...+++
T Consensus       164 la~~~~~-~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         164 CADLKAL-DGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHH-cChHHHHHHHHHHHHHhCccc
Confidence            7877666 888888888888888776653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=2e-08  Score=84.75  Aligned_cols=92  Identities=9%  Similarity=0.066  Sum_probs=78.9

Q ss_pred             cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439          130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR  207 (223)
Q Consensus       130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g--dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee  207 (223)
                      ...+++++|+.+|+++++.+|++..+|..++.++.. .+  ++++|+..++++++++|++..++......++...+++++
T Consensus        84 ~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence            344578999999999999999999999999966653 44  589999999999999999999876555455555899999


Q ss_pred             HHHHHHHHHHhCCCC
Q 027439          208 AESYFDQAVKAAPDD  222 (223)
Q Consensus       208 Ai~~fekAL~l~Pdn  222 (223)
                      |+.+++++++.+|+|
T Consensus       163 Al~~~~~~i~~~p~~  177 (334)
T d1dcea1         163 ELAFTDSLITRNFSN  177 (334)
T ss_dssp             HHHHHHTTTTTTCCC
T ss_pred             HHHHHHHHHHcCCCC
Confidence            999999999999986

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=3e-07  Score=77.36  Aligned_cols=88  Identities=10%  Similarity=0.051  Sum_probs=75.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 027439          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA---------RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-  203 (223)
Q Consensus       134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~---------~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-  203 (223)
                      ..++|+.+++++++++|++..+|+.++.++...         .+++++|+.+++++++.+|+++.++..++.++.. .+ 
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-~~~  122 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPE  122 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSS
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-hcc
Confidence            458999999999999999999998888665431         2348999999999999999999999999977665 54 


Q ss_pred             -CHHHHHHHHHHHHHhCCCC
Q 027439          204 -DASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       204 -~~eeAi~~fekAL~l~Pdn  222 (223)
                       ++++|+..++++++.+|++
T Consensus       123 ~~~~~a~~~~~~al~~~~~~  142 (334)
T d1dcea1         123 PNWARELELCARFLEADERN  142 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHHhhCchh
Confidence             5899999999999999975

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.3e-07  Score=79.54  Aligned_cols=90  Identities=10%  Similarity=0.052  Sum_probs=73.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439          131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES  210 (223)
Q Consensus       131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~  210 (223)
                      ..++++.|+++|+++++..|.+...+..+|...+...++.+.|..+|++++..+|+++.++..++.++.. .|++++|+.
T Consensus       146 ~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g~~~~aR~  224 (308)
T d2onda1         146 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRV  224 (308)
T ss_dssp             HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cCChHHHHH
Confidence            3467788888888888888888888888885544445788888888999988888888888888887776 888888988


Q ss_pred             HHHHHHHhCCC
Q 027439          211 YFDQAVKAAPD  221 (223)
Q Consensus       211 ~fekAL~l~Pd  221 (223)
                      .|++|++..|.
T Consensus       225 ~fe~ai~~~~~  235 (308)
T d2onda1         225 LFERVLTSGSL  235 (308)
T ss_dssp             HHHHHHHSSSS
T ss_pred             HHHHHHHhCCC
Confidence            99988886653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.55  E-value=9.6e-08  Score=73.05  Aligned_cols=66  Identities=9%  Similarity=0.096  Sum_probs=56.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439          132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----------RGDLLKAEEYCARAILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~----------~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l  197 (223)
                      .+.+++|+.+|+++++++|+++.++.++|.++...          .+.|++|+++|++|++++|++..++..++..
T Consensus        54 ~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            35678999999999999999999999999776531          2357999999999999999999988877743

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=6.1e-08  Score=80.96  Aligned_cols=94  Identities=13%  Similarity=0.052  Sum_probs=77.5

Q ss_pred             ccccccCCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 027439          125 WGSWDPNNHGNNSTDLYYQKMIQAD------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLS  192 (223)
Q Consensus       125 gg~~Y~~~gd~~eA~~~y~~aLeld------P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~  192 (223)
                      .|.+|...++|++|+.+|++++++.      +.-+.++.++|.++. ..+++++|+.+|++++++.+..      ..++.
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            3567778899999999999999873      223567899997666 5899999999999999987665      56777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          193 MYGDLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       193 ~lA~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      .++.++....+++++|+.+|++|+++.
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~  148 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWY  148 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence            888777664699999999999998763

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=9.6e-08  Score=71.52  Aligned_cols=65  Identities=8%  Similarity=0.000  Sum_probs=56.3

Q ss_pred             CChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRN--PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLI  198 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n--~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll  198 (223)
                      +++++|+.+|+++++.+|.+  ..++.++|.+++ ..|+|++|+.+|+++++++|++..++.....+.
T Consensus        50 ~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~-~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          50 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            46778999999999999876  458999996666 689999999999999999999999988877543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=2.3e-07  Score=77.91  Aligned_cols=94  Identities=15%  Similarity=0.207  Sum_probs=79.0

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS  206 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n~-~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e  206 (223)
                      ++...+++++|...|+++++..|.+. .+|..++.++. +.+++++|..+|++|+...|.+..++..+|.+.+...++.+
T Consensus       108 ~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~  186 (308)
T d2onda1         108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHH
Confidence            34556789999999999999998774 57888886666 57899999999999999999999999888876666578999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027439          207 RAESYFDQAVKAAPDD  222 (223)
Q Consensus       207 eAi~~fekAL~l~Pdn  222 (223)
                      .|...|++++..+|++
T Consensus       187 ~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         187 VAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            9999999999988875

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=4.3e-07  Score=73.24  Aligned_cols=90  Identities=11%  Similarity=0.091  Sum_probs=73.6

Q ss_pred             cccCCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Q 027439          128 WDPNNHGNNSTDLYYQKMIQADPRN-----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGD  196 (223)
Q Consensus       128 ~Y~~~gd~~eA~~~y~~aLeldP~n-----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~lA~  196 (223)
                      ++...|++++|+.+|+++++..|.+     ..++..+|.++. .+|++++|+.+|++++.+.+..      ..++..++.
T Consensus        21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            4456789999999999999999987     357888996666 5899999999999999876543      345566676


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Q 027439          197 LIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       197 ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      ++.. .+++.+|+..+.+++.+.
T Consensus       100 ~~~~-~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_         100 ILFA-QGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHh
Confidence            6666 999999999999998763

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4e-07  Score=82.26  Aligned_cols=74  Identities=18%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ  200 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~  200 (223)
                      |.++...+++++|+.+|++|++++|++..+++++|.++. ..+++.+|+.+|.||+..+|.++.++.+++.++-.
T Consensus       159 G~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~-~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            455666789999999999999999999999999995444 68999999999999999999999999999976544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=1.1e-06  Score=66.70  Aligned_cols=69  Identities=14%  Similarity=0.019  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          153 PLLLSNYARFLKEA--RGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       153 ~~~l~nlA~~l~~~--~gdyeeA~~~~ekAL~ldP~d~-~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      +.+.++||+++..-  ..+.++|+.++++++..+|.+. +.++.+|..+++ .|+|++|+.+++++|+++|+|
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCc
Confidence            77889999777531  2467899999999999999775 789999988888 999999999999999999987

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=5.9e-07  Score=72.45  Aligned_cols=92  Identities=17%  Similarity=0.087  Sum_probs=76.1

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILM------SPNDGNVLSMYG  195 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l------dP~d~~~l~~lA  195 (223)
                      +..+...+++++|..+++++++..|.+    ...+.++|.++. ..+++++|+.++++++..      .|....++..+|
T Consensus       220 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  298 (366)
T d1hz4a_         220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI-LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN  298 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence            445566789999999999999987765    456777886666 589999999999999853      455677899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Q 027439          196 DLIWQSHKDASRAESYFDQAVKAA  219 (223)
Q Consensus       196 ~ll~~~~G~~eeAi~~fekAL~l~  219 (223)
                      .+++. .|++++|+.+|++|+++.
T Consensus       299 ~~~~~-~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         299 QLYWQ-AGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             HHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHHh
Confidence            88888 999999999999999863

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.98  E-value=6.3e-06  Score=69.16  Aligned_cols=56  Identities=30%  Similarity=0.390  Sum_probs=53.1

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439          166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD  222 (223)
Q Consensus       166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn  222 (223)
                      ..|++++|+..|+++++.+|+|..++..++.++.. .|++++|+..|+++++++|++
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~   63 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEY   63 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGG
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCc
Confidence            36999999999999999999999999999998888 999999999999999999974

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=1.4e-05  Score=60.33  Aligned_cols=62  Identities=10%  Similarity=-0.009  Sum_probs=54.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG  195 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~-~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA  195 (223)
                      .+.++++.+++++++.+|.+. +.++++|..++ ++|+|++|.++++++++++|+|..+....-
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            477899999999999999875 79999996666 689999999999999999999998876554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.92  E-value=1.3e-05  Score=60.88  Aligned_cols=59  Identities=17%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439          160 ARFLKEARGDLLKAEEYCARAILMSPNDG------------NVLSMYGDLIWQSHKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       160 A~~l~~~~gdyeeA~~~~ekAL~ldP~d~------------~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P  220 (223)
                      |...+ ..|+|++|+..|++||+++|+.+            .++.++|.+++. +|++++|+..+++++.+.|
T Consensus        16 g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1          16 AQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhccc
Confidence            54455 47999999999999999998753            568889988877 9999999999999998754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.85  E-value=0.00015  Score=53.38  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---SHKDAS  206 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~---~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~---~~G~~e  206 (223)
                      .++++|+.+|+++.+.  +++.+..++|.++..   ...++++|+++|+++.+.  .++.+...+|.++..   ...+++
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence            4789999999998765  688889999954442   135799999999999885  578899999976554   135899


Q ss_pred             HHHHHHHHHHHhC
Q 027439          207 RAESYFDQAVKAA  219 (223)
Q Consensus       207 eAi~~fekAL~l~  219 (223)
                      +|+.+|++|.+..
T Consensus       113 ~A~~~~~~Aa~~G  125 (133)
T d1klxa_         113 QAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999998764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.52  E-value=0.00012  Score=54.07  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=63.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHH
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS---HKDASRAE  209 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~---~G~~eeAi  209 (223)
                      .|+++|+.+|+++.+.+  ++.+..+++. .  ...++++|+.+|+++.+.  +++.+.+.+|.++..-   ..++++|+
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~-~--~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS-N--SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT-C--TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc-c--cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            59999999999999885  4555566663 2  357999999999999885  6899999999665431   34789999


Q ss_pred             HHHHHHHHhC
Q 027439          210 SYFDQAVKAA  219 (223)
Q Consensus       210 ~~fekAL~l~  219 (223)
                      .+|+++.+..
T Consensus        80 ~~~~~aa~~g   89 (133)
T d1klxa_          80 QYYSKACGLN   89 (133)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHhhhhccC
Confidence            9999998764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.44  E-value=0.00017  Score=56.51  Aligned_cols=70  Identities=7%  Similarity=-0.002  Sum_probs=56.7

Q ss_pred             cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHH
Q 027439          126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA-------ILMSPNDGNVLSMYGDL  197 (223)
Q Consensus       126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekA-------L~ldP~d~~~l~~lA~l  197 (223)
                      +..+...|++++|+.+++++++++|.+..+|.+++.++. ..|++.+|++.|+++       +-++|. +.....+..+
T Consensus        74 a~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~-~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~i  150 (179)
T d2ff4a2          74 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERI  150 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHH
Confidence            445666799999999999999999999999999997777 589999999999998       346674 4444444433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.43  E-value=0.00056  Score=54.57  Aligned_cols=90  Identities=17%  Similarity=0.242  Sum_probs=70.6

Q ss_pred             ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 027439          127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKE---ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--  201 (223)
Q Consensus       127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~---~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~--  201 (223)
                      ..+...+|+++|+++|+++.+.  +++.++.+||.++..   +..++.+|..+++++...  +++.+...++.++...  
T Consensus        10 ~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~   85 (265)
T d1ouva_          10 AKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQG   85 (265)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccccccccc
Confidence            3455678999999999999775  588999999966553   256999999999998874  5788888888665431  


Q ss_pred             -cCCHHHHHHHHHHHHHhCC
Q 027439          202 -HKDASRAESYFDQAVKAAP  220 (223)
Q Consensus       202 -~G~~eeAi~~fekAL~l~P  220 (223)
                       ..+.+.|...|+++....+
T Consensus        86 ~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          86 VSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             SCCCHHHHHHHHHHHHHTTC
T ss_pred             cchhhHHHHHHHhhhhhhhh
Confidence             4688999999999987643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.18  E-value=0.0011  Score=52.81  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=54.1

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh
Q 027439          152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ---SHKDASRAESYFDQAVKA  218 (223)
Q Consensus       152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~---~~G~~eeAi~~fekAL~l  218 (223)
                      ||.+++++|..++ ..+|+++|+++|++|.+.  ++..+++.+|.+++.   ...++.+|..+++++...
T Consensus         1 ~p~~~~~lG~~~~-~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~   67 (265)
T d1ouva_           1 DPKELVGLGAKSY-KEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   67 (265)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence            6789999996666 589999999999999875  689999999977664   256999999999998765

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.94  E-value=1.3  Score=30.24  Aligned_cols=45  Identities=7%  Similarity=0.092  Sum_probs=26.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 027439          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN  186 (223)
Q Consensus       133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~  186 (223)
                      .+..+|+.+.++|++.|-..     +|-.    ...-|.+|+++|..++...|+
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g-----~y~e----A~~~Y~~aie~l~~~~~~e~~   54 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAES-----RYQQ----ALVCYQEGIDMLLQVLKGTKE   54 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT-----CHHH----HHHHHHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHHHHHHcC-----CHHH----HHHHHHHHHHHHHHHhhccCC
Confidence            37789999999998875331     1111    112244566666666666654