Citrus Sinensis ID: 027441

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MKEGESRKRKRRRRHNSNSKPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHccccccccccHHHHHHHcccHHHHHccccccccccHHHHHccccccccccccccccHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEEEEcccHHHHHHHHcccEEEEEccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHcccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccEEEEEccccHHHHHHHccccEEEEEcccccccEEEEEccccccccccccEEEEEHHHccccHHHHHHHHHHHHccccEEEc
Coil and Loop (DISEMBL)
mkegesrkrkrrrrhnsnskpqdqesyqskSTAKTTAKKHKQDTVKNNEQQYEHHQtsaaasakrpkpssfLDKMRARLsgghfrmlneklytCTGKEALdyfnenpalfdmYHSGYqeqmshwpelpVNIIVKWLkdhspslviadfgcgdarLAKSVKNKVFsfdlvsndpsviacdmsntplnsssVDVAVFCLSLMGINFPNYLQEAQRVLkprgeeqi
Flexible Loop (DISEMBL)
mkegesrkrkrrrrhnsnskpqdqesyqskstakttakkHKQDTVKNNEQQYEHhqtsaaasakrpkpssFLDKMRARLsgghfrmlNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLkprgeeqi
Low Complexity Region (SEG)
MKEGESrkrkrrrrHNSNSKPQDQESYQskstakttakkHKQDTVKNNEQQYEHHQTsaaasakrpkpssFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI
Disordered region (IsUnstruct)
*******************************************************************************SGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIAC*********************************************
Disordered Region (DISOPRED)
***********************************************************************************FRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI
Disordered Region (DISEMBL)
*********************************************************************SFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRV*********
Disordered Region (DISPRO)
*******************************************************************PSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEGESRKRKRRRRHNSNSKPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q84JC0	287	Ribosomal RNA-processing	no	no	0.860	0.668	0.67	1e-73
Q5U4F0	457	Ribosomal RNA-processing	yes	no	0.654	0.319	0.541	8e-42
O43159	456	Ribosomal RNA-processing	yes	no	0.892	0.436	0.418	8e-42
Q9DB85	457	Ribosomal RNA-processing	yes	no	0.654	0.319	0.541	2e-41
O44410	343	Ribosomal RNA-processing	yes	no	0.704	0.457	0.452	2e-40
A8XI07	332	Ribosomal RNA-processing	N/A	no	0.663	0.445	0.466	4e-39
Q10257	318	Ribosomal RNA-processing	yes	no	0.713	0.5	0.450	6e-39
Q54CP1	390	Ribosomal RNA-processing	yes	no	0.686	0.392	0.464	2e-36
Q7K2B0	358	Ribosomal RNA-processing	yes	no	0.735	0.458	0.432	3e-35
P38961	392	Ribosomal RNA-processing	yes	no	0.977	0.556	0.328	1e-33

>sp|Q84JC0|RRP8_ARATH Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana GN=At5g40530 PE=2 SV=1

 Score =  276 bits (705), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 158/200 (79%), Gaps = 8/200 (4%)

Query: 20  KPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARL 79
           KP  +E  ++  T K   +K  Q   KN     + H  S+A S KRPKPS+FLD +R RL
Sbjct: 21  KPSKEEPIET--TPKNQNEKKNQRDTKN-----QQHGGSSAPS-KRPKPSNFLDALRERL 72

Query: 80  SGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH 139
           SGG FRMLNEKLYTC+GKEALDYF E+P +FDMYH+GYQ+QMS+WPELPVN I+ WL  +
Sbjct: 73  SGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSN 132

Query: 140 SPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSL 199
           S SLV+ADFGCGDAR+AKSVKNKVFSFDLVS +PSVIACDMSNT L SSSVDVAVFCLSL
Sbjct: 133 SSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSL 192

Query: 200 MGINFPNYLQEAQRVLKPRG 219
           MG N+ +Y++EA RVL+P G
Sbjct: 193 MGTNYSSYIKEAHRVLRPSG 212

Probable methyltransferase required to silence rDNA.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q5U4F0|RRP8_RAT Ribosomal RNA-processing protein 8 OS=Rattus norvegicus GN=Rrp8 PE=2 SV=1

 Score =  170 bits (430), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 95/146 (65%)

Query: 74  KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
           +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct: 242 RMTQRLDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301

Query: 134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
           K L+    SLV+ADFGCGD RLA SV+N V  FDL + DP V  CDM+  PL   SVDVA
Sbjct: 302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLAALDPRVTVCDMAQVPLEDESVDVA 361

Query: 194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
           VFCLSLMG N  ++L+EA RVLKP G
Sbjct: 362 VFCLSLMGTNIRDFLEEANRVLKPGG 387

Essential component of the eNoSC (energy-dependent nucleolar silencing) complex, a complex that mediates silencing of rDNA in response to intracellular energy status and acts by recruiting histone-modifying enzymes. The eNoSC complex is able to sense the energy status of cell: upon glucose starvation, elevation of NAD(+)/NADP(+) ratio activates SIRT1, leading to histone H3 deacetylation followed by dimethylation of H3 at 'Lys-9' (H3K9me2) by SUV39H1 and the formation of silent chromatin in the rDNA locus. In the complex, RRP8 binds to H3K9me2 and probably acts as a methyltransferase. Its substrates are however unknown.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O43159|RRP8_HUMAN Ribosomal RNA-processing protein 8 OS=Homo sapiens GN=RRP8 PE=1 SV=2

 Score =  170 bits (430), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 120/220 (54%), Gaps = 21/220 (9%)

Query: 2   KEGESRKRKRRRRHNSNSKPQ--DQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSA 59
           K+  +R++ +RR  N    PQ  DQ   ++ +     +   + D+          H+  A
Sbjct: 186 KQWRNRQKNKRRCKNKFQPPQVPDQAPAEAPTEKTEVSPVPRTDS----------HEARA 235

Query: 60  AASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQE 119
            A   R         M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q 
Sbjct: 236 GALRAR---------MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQS 286

Query: 120 QMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACD 179
           Q+  WP  PV+ I + L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CD
Sbjct: 287 QVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCD 346

Query: 180 MSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           M+  PL   SVDVAVFCLSLMG N  ++L+EA RVLKP G
Sbjct: 347 MAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGG 386

Essential component of the eNoSC (energy-dependent nucleolar silencing) complex, a complex that mediates silencing of rDNA in response to intracellular energy status and acts by recruiting histone-modifying enzymes. The eNoSC complex is able to sense the energy status of cell: upon glucose starvation, elevation of NAD(+)/NADP(+) ratio activates SIRT1, leading to histone H3 deacetylation followed by dimethylation of H3 at 'Lys-9' (H3K9me2) by SUV39H1 and the formation of silent chromatin in the rDNA locus. In the complex, RRP8 binds to H3K9me2 and probably acts as a methyltransferase. Its substrates are however unknown.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9DB85|RRP8_MOUSE Ribosomal RNA-processing protein 8 OS=Mus musculus GN=Rrp8 PE=1 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 94/146 (64%)

Query: 74  KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
           +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct: 242 RMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301

Query: 134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
           K L+    SLV+ADFGCGD RLA SV+N V  FDL S DP V  CDM+  PL   SVDVA
Sbjct: 302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 361

Query: 194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
           VFCLSLMG N  ++L+EA RVLK  G
Sbjct: 362 VFCLSLMGTNIRDFLEEANRVLKTGG 387

Essential component of the eNoSC (energy-dependent nucleolar silencing) complex, a complex that mediates silencing of rDNA in response to intracellular energy status and acts by recruiting histone-modifying enzymes. The eNoSC complex is able to sense the energy status of cell: upon glucose starvation, elevation of NAD(+)/NADP(+) ratio activates SIRT1, leading to histone H3 deacetylation followed by dimethylation of H3 at 'Lys-9' (H3K9me2) by SUV39H1 and the formation of silent chromatin in the rDNA locus. In the complex, RRP8 binds to H3K9me2 and probably acts as a methyltransferase. Its substrates are however unknown.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O44410|RRP8_CAEEL Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans GN=T07A9.8 PE=3 SV=1

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 2/159 (1%)

Query: 63  AKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMS 122
           A  P+ +  + + + RL  G FR LNEKLYTCTG EA D+F E+P  FD+YH G+ +Q+ 
Sbjct: 118 AAAPEEADPIAEAKKRLDAGRFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVK 177

Query: 123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDM 180
            WP  P+  I++WL+       + D GCG+A++A++V  K+K+ SFDLV+ +  V +CDM
Sbjct: 178 KWPNHPLREIIRWLQSKPDQQSVFDLGCGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDM 237

Query: 181 SNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           S  P   SS D+ ++CLSLMG N  ++++EA+RVLK  G
Sbjct: 238 SKLPAEDSSADIVIYCLSLMGTNLYDFIREARRVLKIGG 276

Probable methyltransferase required to silence rDNA.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A8XI07|RRP8_CAEBR Ribosomal RNA-processing protein 8 OS=Caenorhabditis briggsae GN=CBG13492 PE=3 SV=1

 Score =  160 bits (406), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 100/150 (66%), Gaps = 2/150 (1%)

Query: 76  RARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKW 135
           + RL  G FRMLNEKLYTCTG EA D+F E+   FD+YH G+ +Q+  WP  P+  I++W
Sbjct: 120 KKRLDAGRFRMLNEKLYTCTGSEAFDFFKEDRTAFDLYHRGFADQVKKWPNHPLREIIRW 179

Query: 136 LKDHSPSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
           L+       + D GCG+A++A++V  K+ + SFDLV+ +  V +CDMS  P    S DV 
Sbjct: 180 LQAKPDKQAVFDLGCGEAKIAEAVGEKHTIRSFDLVAVNDRVESCDMSKLPAEDGSADVV 239

Query: 194 VFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223
           +FCLSLMG N  ++++EA+RVL+  G  +I
Sbjct: 240 IFCLSLMGTNLYDFIKEARRVLRTGGVLKI 269

Probable methyltransferase required to silence rDNA.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q10257|RRP8_SCHPO Ribosomal RNA-processing protein 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp8 PE=3 SV=1

 Score =  160 bits (406), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 115/171 (67%), Gaps = 12/171 (7%)

Query: 61  ASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQ 120
             AK  K +S   KM+ +L G +FR +NE+LYT    +A+  F ENP LFD+YH+G++ Q
Sbjct: 79  GDAKHTKLTSLQQKMKDKLDGANFRWINEQLYTTESDKAVQMFKENPDLFDIYHAGFRYQ 138

Query: 121 MSHWPELPVNIIVKWLK---DHSPS-----LVIADFGCGDARLAKSVKN----KVFSFDL 168
           +  WPE PV+I ++ LK   +HS +     +VIAD GCG+A++A + +     +V SFDL
Sbjct: 139 VEGWPENPVDIFIQHLKIRFEHSNAKKKNNIVIADLGCGEAKIASTFRKSRSLQVHSFDL 198

Query: 169 VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           V+ +  V+ACD++N P+   +VD+AVFCLSLMG N+ ++L+EA R+LK  G
Sbjct: 199 VAPNEHVVACDIANVPMADETVDIAVFCLSLMGTNWQSFLKEAYRILKVGG 249

Probable methyltransferase involved in rRNA processing. Required for efficient pre-rRNA cleavage at site A2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q54CP1|RRP8_DICDI Ribosomal RNA-processing protein 8 OS=Dictyostelium discoideum GN=rrp8 PE=3 SV=1

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 2/155 (1%)

Query: 67  KPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPE 126
           K +   ++M  +L G  FR LNE LYT   KEA   F+E+ +LFD YHSG++ Q+  WP 
Sbjct: 154 KTTDLQNEMSEKLKGSRFRWLNETLYTTHSKEAFKEFSEDRSLFDQYHSGFKSQVESWPI 213

Query: 127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNK--VFSFDLVSNDPSVIACDMSNTP 184
            P+++I+  L        IAD GCG+A+LA+ +++K  + SFDLV+ +  V ACD+SN P
Sbjct: 214 NPLDLIIDDLSSIKQRKRIADLGCGEAKLAERLQHKHTIQSFDLVAVNERVTACDISNLP 273

Query: 185 LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           L + S+D+AVFCLSLMG NF +++ EA+RVL   G
Sbjct: 274 LKNESIDIAVFCLSLMGTNFIDFIIEAERVLVKGG 308

Probable methyltransferase required to silence rDNA.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q7K2B0|RRP8_DROME Ribosomal RNA-processing protein 8 OS=Drosophila melanogaster GN=CG7137 PE=1 SV=1

 Score =  148 bits (373), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 110/164 (67%)

Query: 60  AASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQE 119
           A S+  P  +S   K+++ L GG FR +NE+LY+ T ++A   F ++ + F+ YH+GY++
Sbjct: 131 ATSSTTPAANSLASKLQSELLGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQ 190

Query: 120 QMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACD 179
           Q+  WP  P+N I+K +K    + +I DFGCG+ +LA+SV NKV+S DLV+    +IAC+
Sbjct: 191 QVEKWPINPLNRIIKTIKKIPKTAIIGDFGCGEGKLAQSVPNKVYSMDLVAARSDIIACN 250

Query: 180 MSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223
           +++TPL + ++DVAV+CLSLMG +   +  EA RVLK  G   I
Sbjct: 251 ITDTPLQARTLDVAVYCLSLMGTDLNEFFLEANRVLKLHGTVYI 294

Probable methyltransferase required to silence rDNA.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P38961|RRP8_YEAST Ribosomal RNA-processing protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP8 PE=1 SV=2

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 126/259 (48%), Gaps = 41/259 (15%)

Query: 6   SRKRKRRRRHNSNSKPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKR 65
           +R++K +    +  K Q ++     S AK   KK+++ + +N   +   H   A     +
Sbjct: 40  TREQKLKEETEAELKEQVEDIPSEGSVAKDIPKKNQEKSDQNETSKKRKHDEEAPLMQVK 99

Query: 66  P---KPSS-----FLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGY 117
               KP+         KM A+L+G  FR +NE+LYT +  EAL    E P LFD YH G+
Sbjct: 100 ENIEKPTKKQLTPLQQKMMAKLTGSRFRWINEQLYTISSDEALKLIKEQPQLFDEYHDGF 159

Query: 118 QEQMSHWPELPVNIIVKWLK----------------DHSPSLVIADFGCGDARLAKSVKN 161
           + Q+  WPE PV++ V  ++                  S  +VIAD GCG+A+LA  + N
Sbjct: 160 RSQVQAWPENPVDVFVDQIRYRCMKPVNAPGGLPGLKDSKEIVIADMGCGEAQLALEINN 219

Query: 162 -----------------KVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINF 204
                            KV SFDL   +  +   D+ N PL   S  + VFCL+LMG NF
Sbjct: 220 FFKNYNKKAKKYLKRRHKVHSFDLKKANERITVADIRNVPLPDESCTIVVFCLALMGTNF 279

Query: 205 PNYLQEAQRVLKPRGEEQI 223
            ++++EA R+L PRGE  I
Sbjct: 280 LDFIKEAYRILAPRGELWI 298

Probable methyltransferase involved in rRNA processing. Required for efficient pre-rRNA cleavage at site A2. Also involved in telomere length regulation and maintenance.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
225452314	263	PREDICTED: ribosomal RNA-processing prot	0.802	0.680	0.743	4e-76
449450068	283	PREDICTED: ribosomal RNA-processing prot	0.677	0.533	0.821	2e-74
449522642	283	PREDICTED: ribosomal RNA-processing prot	0.677	0.533	0.821	2e-74
147767094	237	hypothetical protein VITISV_009442 [Viti	0.695	0.654	0.811	1e-73
297805624	295	hypothetical protein ARALYDRAFT_330455 [	0.937	0.708	0.617	2e-72
224055577	220	predicted protein [Populus trichocarpa]	0.650	0.659	0.848	6e-72
42573535	301	ribosomal RNA-processing protein 8 [Arab	0.860	0.637	0.67	6e-72
30693618	287	ribosomal RNA-processing protein 8 [Arab	0.860	0.668	0.67	6e-72
9758079	310	unnamed protein product [Arabidopsis tha	0.860	0.619	0.67	8e-72
255560934	264	Cerebral protein, putative [Ricinus comm	0.834	0.704	0.716	8e-72

>gi|225452314|ref|XP_002272751.1| PREDICTED: ribosomal RNA-processing protein 8 [Vitis vinifera]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 133/179 (74%), Positives = 150/179 (83%)

Query: 41  KQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEAL 100
           K+ T +N E Q +  +       K    SSFLDKMRARLSGGHFRM+NEKLYTCTG EAL
Sbjct: 10  KRRTPQNGESQTKKKRKHEKVDGKSKSSSSFLDKMRARLSGGHFRMINEKLYTCTGSEAL 69

Query: 101 DYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK 160
            YF E+PALF++YH GYQEQMSHWP+ PVNII+KWLKDHSPSL++ADFGCGDARLA++VK
Sbjct: 70  SYFEEDPALFNVYHVGYQEQMSHWPQQPVNIIIKWLKDHSPSLIVADFGCGDARLARNVK 129

Query: 161 NKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           NKVFSFDLVS+DPSVI CDMSNTPL SSS+DVAVFCLSLMG NF +YLQEA RVLKP G
Sbjct: 130 NKVFSFDLVSSDPSVIVCDMSNTPLESSSIDVAVFCLSLMGTNFSSYLQEAHRVLKPCG 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450068|ref|XP_004142786.1| PREDICTED: ribosomal RNA-processing protein 8-like [Cucumis sativus]

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 143/151 (94%)

Query: 69  SSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELP 128
           SSFLDKMRARLSGGHFRMLNEKLYTCTG+EAL+YF E+  LFD+YH+GYQEQM+HWPELP
Sbjct: 58  SSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELP 117

Query: 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSS 188
           VN+I+KWLK+H PS ++ADFGCGDARL+K+VKNKVFSFDLVS DPSVIACDMSNTPL+S+
Sbjct: 118 VNLIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSA 177

Query: 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           SVDVAVFCLSLMG+N+ +YL EA+RVLKPRG
Sbjct: 178 SVDVAVFCLSLMGVNYASYLAEARRVLKPRG 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522642|ref|XP_004168335.1| PREDICTED: ribosomal RNA-processing protein 8-like [Cucumis sativus]

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 143/151 (94%)

Query: 69  SSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELP 128
           SSFLDKMRARLSGGHFRMLNEKLYTCTG+EAL+YF E+  LFD+YH+GYQEQM+HWPELP
Sbjct: 58  SSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELP 117

Query: 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSS 188
           VN+I+KWLK+H PS ++ADFGCGDARL+K+VKNKVFSFDLVS DPSVIACDMSNTPL+S+
Sbjct: 118 VNLIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSA 177

Query: 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           SVDVAVFCLSLMG+N+ +YL EA+RVLKPRG
Sbjct: 178 SVDVAVFCLSLMGVNYASYLAEARRVLKPRG 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767094|emb|CAN65396.1| hypothetical protein VITISV_009442 [Vitis vinifera]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 129/159 (81%), Positives = 143/159 (89%), Gaps = 4/159 (2%)

Query: 65  RPKPS----SFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQ 120
           R KP     SFLDKMRARLSGGHFRM+NEKLYTCTG EAL YF E+PALF++YH+GYQEQ
Sbjct: 4   RAKPKIWAWSFLDKMRARLSGGHFRMINEKLYTCTGSEALSYFEEDPALFNVYHAGYQEQ 63

Query: 121 MSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDM 180
           MSHWP+ PVNII+KWLKDHSPSL++ADFGCGDARLA++VKNKVFSFDLVS+DPSVI CDM
Sbjct: 64  MSHWPQQPVNIIIKWLKDHSPSLIVADFGCGDARLARNVKNKVFSFDLVSSDPSVIVCDM 123

Query: 181 SNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           SNTPL SSS+DVAVFCLSLMG NF +YLQEA RVLKP G
Sbjct: 124 SNTPLESSSIDVAVFCLSLMGTNFSSYLQEAHRVLKPCG 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805624|ref|XP_002870696.1| hypothetical protein ARALYDRAFT_330455 [Arabidopsis lyrata subsp. lyrata] gi|297316532|gb|EFH46955.1| hypothetical protein ARALYDRAFT_330455 [Arabidopsis lyrata subsp. lyrata]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/217 (61%), Positives = 165/217 (76%), Gaps = 8/217 (3%)

Query: 3   EGESRKRKRRRRHNSNSKPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAAS 62
           E  +  + R+R+   N KP  +E  ++ +      KK ++DT      + + H  S +AS
Sbjct: 4   EESTTSKNRKRKRQRNPKPSKEELIET-TPKNQNNKKSQRDT------KVQQHGGS-SAS 55

Query: 63  AKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMS 122
           +KRPK S+FLD +R RLSGG FRMLNEKLYTC+GKEALDYF E+P +FDMYH+GYQ+QMS
Sbjct: 56  SKRPKSSNFLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPEMFDMYHTGYQQQMS 115

Query: 123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSN 182
           +WPELPVN I+ WL   S SLV+ADFGCGDAR+AKSVKNKVFSFDLVS +PSVIACDMSN
Sbjct: 116 NWPELPVNSIINWLLSKSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSN 175

Query: 183 TPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           T L SSSVDV VFCLSLMG N+ +Y++EA RVL+P G
Sbjct: 176 TSLESSSVDVTVFCLSLMGTNYSSYIKEAHRVLRPSG 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055577|ref|XP_002298548.1| predicted protein [Populus trichocarpa] gi|222845806|gb|EEE83353.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 123/145 (84%), Positives = 136/145 (93%)

Query: 75  MRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVK 134
           MRARLSGGHFRM+NEKLYTCTG EALDYF E+P+LFDMYH+GYQEQMSHWPE PVNII++
Sbjct: 1   MRARLSGGHFRMINEKLYTCTGDEALDYFKEDPSLFDMYHTGYQEQMSHWPEQPVNIIIQ 60

Query: 135 WLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAV 194
           WLK  S SLV+ADFGCGDARLAK+VKNKVFSFDLVSNDPSVIACDMSNTPL++SS+DVAV
Sbjct: 61  WLKARSSSLVVADFGCGDARLAKNVKNKVFSFDLVSNDPSVIACDMSNTPLDASSIDVAV 120

Query: 195 FCLSLMGINFPNYLQEAQRVLKPRG 219
           FCLSLMG NFP+YL+EA RVLKP G
Sbjct: 121 FCLSLMGTNFPSYLEEAHRVLKPSG 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573535|ref|NP_974864.1| ribosomal RNA-processing protein 8 [Arabidopsis thaliana] gi|332007176|gb|AED94559.1| ribosomal RNA-processing protein 8 [Arabidopsis thaliana]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 158/200 (79%), Gaps = 8/200 (4%)

Query: 20  KPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARL 79
           KP  +E  ++  T K   +K  Q   KN     + H  S+A S KRPKPS+FLD +R RL
Sbjct: 21  KPSKEEPIET--TPKNQNEKKNQRDTKN-----QQHGGSSAPS-KRPKPSNFLDALRERL 72

Query: 80  SGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH 139
           SGG FRMLNEKLYTC+GKEALDYF E+P +FDMYH+GYQ+QMS+WPELPVN I+ WL  +
Sbjct: 73  SGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSN 132

Query: 140 SPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSL 199
           S SLV+ADFGCGDAR+AKSVKNKVFSFDLVS +PSVIACDMSNT L SSSVDVAVFCLSL
Sbjct: 133 SSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSL 192

Query: 200 MGINFPNYLQEAQRVLKPRG 219
           MG N+ +Y++EA RVL+P G
Sbjct: 193 MGTNYSSYIKEAHRVLRPSG 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693618|ref|NP_198869.2| ribosomal RNA-processing protein 8 [Arabidopsis thaliana] gi|75146626|sp|Q84JC0.1|RRP8_ARATH RecName: Full=Ribosomal RNA-processing protein 8 gi|27754615|gb|AAO22753.1| unknown protein [Arabidopsis thaliana] gi|28394063|gb|AAO42439.1| unknown protein [Arabidopsis thaliana] gi|332007177|gb|AED94560.1| ribosomal RNA-processing protein 8 [Arabidopsis thaliana]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 158/200 (79%), Gaps = 8/200 (4%)

Query: 20  KPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARL 79
           KP  +E  ++  T K   +K  Q   KN     + H  S+A S KRPKPS+FLD +R RL
Sbjct: 21  KPSKEEPIET--TPKNQNEKKNQRDTKN-----QQHGGSSAPS-KRPKPSNFLDALRERL 72

Query: 80  SGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH 139
           SGG FRMLNEKLYTC+GKEALDYF E+P +FDMYH+GYQ+QMS+WPELPVN I+ WL  +
Sbjct: 73  SGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSN 132

Query: 140 SPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSL 199
           S SLV+ADFGCGDAR+AKSVKNKVFSFDLVS +PSVIACDMSNT L SSSVDVAVFCLSL
Sbjct: 133 SSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSL 192

Query: 200 MGINFPNYLQEAQRVLKPRG 219
           MG N+ +Y++EA RVL+P G
Sbjct: 193 MGTNYSSYIKEAHRVLRPSG 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758079|dbj|BAB08523.1| unnamed protein product [Arabidopsis thaliana]

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 158/200 (79%), Gaps = 8/200 (4%)

Query: 20  KPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARL 79
           KP  +E  ++  T K   +K  Q   KN     + H  S+A S KRPKPS+FLD +R RL
Sbjct: 21  KPSKEEPIET--TPKNQNEKKNQRDTKN-----QQHGGSSAPS-KRPKPSNFLDALRERL 72

Query: 80  SGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH 139
           SGG FRMLNEKLYTC+GKEALDYF E+P +FDMYH+GYQ+QMS+WPELPVN I+ WL  +
Sbjct: 73  SGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSN 132

Query: 140 SPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSL 199
           S SLV+ADFGCGDAR+AKSVKNKVFSFDLVS +PSVIACDMSNT L SSSVDVAVFCLSL
Sbjct: 133 SSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSL 192

Query: 200 MGINFPNYLQEAQRVLKPRG 219
           MG N+ +Y++EA RVL+P G
Sbjct: 193 MGTNYSSYIKEAHRVLRPSG 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560934|ref|XP_002521480.1| Cerebral protein, putative [Ricinus communis] gi|223539379|gb|EEF40970.1| Cerebral protein, putative [Ricinus communis]

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 158/187 (84%), Gaps = 1/187 (0%)

Query: 34  KTTAKKHKQDTVKN-NEQQYEHHQTSAAASAKRPKPSSFLDKMRARLSGGHFRMLNEKLY 92
           KT  K+ + +  K+ N+   E   T++A+S +    SSFL+KMRARLSGGHFRMLNEKLY
Sbjct: 4   KTNRKRKRANHSKSQNQFNSEAEPTNSASSKRPKSSSSFLEKMRARLSGGHFRMLNEKLY 63

Query: 93  TCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD 152
           TCTG EAL+YF ++P+LFDMYH+GYQEQMSHWPE PVNII+ WLK+ + SLV+ADFGCGD
Sbjct: 64  TCTGDEALNYFKDDPSLFDMYHAGYQEQMSHWPEQPVNIIINWLKNRNSSLVVADFGCGD 123

Query: 153 ARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQ 212
           ARLAK+VKNKV+SFDLVS+DPSVIACDMS TPL++SSVDVAVFCLSLMG NFP YLQEA 
Sbjct: 124 ARLAKNVKNKVYSFDLVSSDPSVIACDMSKTPLDASSVDVAVFCLSLMGTNFPRYLQEAH 183

Query: 213 RVLKPRG 219
           RVLKP G
Sbjct: 184 RVLKPSG 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2168763	301	AT5G40530 [Arabidopsis thalian	0.802	0.594	0.661	2.1e-61
UNIPROTKB|O43159	456	RRP8 "Ribosomal RNA-processing	0.654	0.320	0.534	3e-37
UNIPROTKB|E1BJI1	457	RRP8 "Uncharacterized protein"	0.654	0.319	0.527	3.9e-37
UNIPROTKB|I3LPL4	459	RRP8 "Uncharacterized protein"	0.654	0.318	0.534	3.9e-37
RGD|1308302	457	Rrp8 "ribosomal RNA processing	0.654	0.319	0.541	4.9e-37
MGI|MGI:1914251	457	Rrp8 "ribosomal RNA processing	0.654	0.319	0.541	1.3e-36
WB|WBGene00020296	343	T07A9.8 [Caenorhabditis elegan	0.645	0.419	0.479	1.3e-36
UNIPROTKB|O44410	343	T07A9.8 "Ribosomal RNA-process	0.645	0.419	0.479	1.3e-36
UNIPROTKB|E2QUX8	664	RRP8 "Uncharacterized protein"	0.654	0.219	0.527	8.4e-36
UNIPROTKB|A8XI07	332	CBG13492 "Ribosomal RNA-proces	0.645	0.433	0.472	2.4e-35

TAIR|locus:2168763 AT5G40530 [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 119/180 (66%), Positives = 140/180 (77%)

Query:    41 KQDTVKNNEQQYEHHQTXXXXXXXXXXX-XXFLDKMRARLSGGHFRMLNEKLYTCTGKEA 99
             K    K N++  ++ Q               FLD +R RLSGG FRMLNEKLYTC+GKEA
Sbjct:    33 KNQNEKKNQRDTKNQQHGGSSAPSKRPKPSNFLDALRERLSGGQFRMLNEKLYTCSGKEA 92

Query:   100 LDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSV 159
             LDYF E+P +FDMYH+GYQ+QMS+WPELPVN I+ WL  +S SLV+ADFGCGDAR+AKSV
Sbjct:    93 LDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSNSSSLVVADFGCGDARIAKSV 152

Query:   160 KNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
             KNKVFSFDLVS +PSVIACDMSNT L SSSVDVAVFCLSLMG N+ +Y++EA RVL+P G
Sbjct:   153 KNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSG 212

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|O43159 RRP8 "Ribosomal RNA-processing protein 8" [Homo sapiens (taxid:9606)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 78/146 (53%), Positives = 95/146 (65%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   241 RMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIA 300

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             + L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   SVDVA
Sbjct:   301 RDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 360

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
             VFCLSLMG N  ++L+EA RVLKP G
Sbjct:   361 VFCLSLMGTNIRDFLEEANRVLKPGG 386

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0000183 "chromatin silencing at rDNA" evidence=IDA

GO:0033553 "rDNA heterochromatin" evidence=IDA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0005677 "chromatin silencing complex" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=TAS

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IMP

GO:0071158 "positive regulation of cell cycle arrest" evidence=IMP

GO:0046015 "regulation of transcription by glucose" evidence=IMP

GO:0042149 "cellular response to glucose starvation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E1BJI1 RRP8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 77/146 (52%), Positives = 95/146 (65%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   242 RMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQNQVKKWPLQPVDRIA 301

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             + L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   S+DVA
Sbjct:   302 RDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESIDVA 361

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
             VFCLSLMG N  ++L+EA RVLKP G
Sbjct:   362 VFCLSLMGTNIRDFLEEANRVLKPGG 387

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA

GO:0046015 "regulation of transcription by glucose" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|I3LPL4 RRP8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 78/146 (53%), Positives = 96/146 (65%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   244 RMAQRLDGARFRYLNEQLYSQPSHAAQRLFQEDPEAFLLYHRGFQSQVRKWPLQPVDRIA 303

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             + L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL  +SVDVA
Sbjct:   304 RDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDASVDVA 363

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
             VFCLSLMG N  ++L+EA RVLKP G
Sbjct:   364 VFCLSLMGTNIRDFLEEANRVLKPGG 389

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA

GO:0046015 "regulation of transcription by glucose" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|1308302 Rrp8 "ribosomal RNA processing 8, methyltransferase, homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 79/146 (54%), Positives = 95/146 (65%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   242 RMTQRLDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             K L+    SLV+ADFGCGD RLA SV+N V  FDL + DP V  CDM+  PL   SVDVA
Sbjct:   302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLAALDPRVTVCDMAQVPLEDESVDVA 361

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
             VFCLSLMG N  ++L+EA RVLKP G
Sbjct:   362 VFCLSLMGTNIRDFLEEANRVLKPGG 387

GO:0000183 "chromatin silencing at rDNA" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005677 "chromatin silencing complex" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=ISO;ISS

GO:0035064 "methylated histone residue binding" evidence=ISO;ISS

GO:0042149 "cellular response to glucose starvation" evidence=IEA;ISO

GO:0046015 "regulation of transcription by glucose" evidence=IEA;ISO

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA;ISO

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA;ISO

MGI|MGI:1914251 Rrp8 "ribosomal RNA processing 8, methyltransferase, homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 79/146 (54%), Positives = 94/146 (64%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   242 RMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             K L+    SLV+ADFGCGD RLA SV+N V  FDL S DP V  CDM+  PL   SVDVA
Sbjct:   302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 361

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
             VFCLSLMG N  ++L+EA RVLK  G
Sbjct:   362 VFCLSLMGTNIRDFLEEANRVLKTGG 387

GO:0000183 "chromatin silencing at rDNA" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=ISO

GO:0035064 "methylated histone residue binding" evidence=ISO

GO:0042149 "cellular response to glucose starvation" evidence=ISO

GO:0046015 "regulation of transcription by glucose" evidence=ISO

GO:0071158 "positive regulation of cell cycle arrest" evidence=ISO

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=ISO

WB|WBGene00020296 T07A9.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 70/146 (47%), Positives = 100/146 (68%)

Query:    76 RARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKW 135
             + RL  G FR LNEKLYTCTG EA D+F E+P  FD+YH G+ +Q+  WP  P+  I++W
Sbjct:   131 KKRLDAGRFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVKKWPNHPLREIIRW 190

Query:   136 LKDHSPSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             L+       + D GCG+A++A++V  K+K+ SFDLV+ +  V +CDMS  P   SS D+ 
Sbjct:   191 LQSKPDQQSVFDLGCGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDMSKLPAEDSSADIV 250

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
             ++CLSLMG N  ++++EA+RVLK  G
Sbjct:   251 IYCLSLMGTNLYDFIREARRVLKIGG 276

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|O44410 T07A9.8 "Ribosomal RNA-processing protein 8" [Caenorhabditis elegans (taxid:6239)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 70/146 (47%), Positives = 100/146 (68%)

Query:    76 RARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKW 135
             + RL  G FR LNEKLYTCTG EA D+F E+P  FD+YH G+ +Q+  WP  P+  I++W
Sbjct:   131 KKRLDAGRFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVKKWPNHPLREIIRW 190

Query:   136 LKDHSPSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             L+       + D GCG+A++A++V  K+K+ SFDLV+ +  V +CDMS  P   SS D+ 
Sbjct:   191 LQSKPDQQSVFDLGCGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDMSKLPAEDSSADIV 250

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
             ++CLSLMG N  ++++EA+RVLK  G
Sbjct:   251 IYCLSLMGTNLYDFIREARRVLKIGG 276

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0000183 "chromatin silencing at rDNA" evidence=ISS

GO:0005677 "chromatin silencing complex" evidence=ISS

GO:0033553 "rDNA heterochromatin" evidence=ISS

UNIPROTKB|E2QUX8 RRP8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 392 (143.0 bits), Expect = 8.4e-36, P = 8.4e-36
 Identities = 77/146 (52%), Positives = 94/146 (64%)

Query:    74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
             +M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I 
Sbjct:   449 RMAQRLDGARFRYLNEQLYSKPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIA 508

Query:   134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             + L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   SVDVA
Sbjct:   509 RDLRQRPASLVVADFGCGDCRLASSIRNTVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 568

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
             VFCLSLMG N  ++L+EA RVLK  G
Sbjct:   569 VFCLSLMGTNIRDFLEEANRVLKQGG 594

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA

GO:0046015 "regulation of transcription by glucose" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|A8XI07 CBG13492 "Ribosomal RNA-processing protein 8" [Caenorhabditis briggsae (taxid:6238)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 69/146 (47%), Positives = 98/146 (67%)

Query:    76 RARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKW 135
             + RL  G FRMLNEKLYTCTG EA D+F E+   FD+YH G+ +Q+  WP  P+  I++W
Sbjct:   120 KKRLDAGRFRMLNEKLYTCTGSEAFDFFKEDRTAFDLYHRGFADQVKKWPNHPLREIIRW 179

Query:   136 LKDHSPSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
             L+       + D GCG+A++A++V  K+ + SFDLV+ +  V +CDMS  P    S DV 
Sbjct:   180 LQAKPDKQAVFDLGCGEAKIAEAVGEKHTIRSFDLVAVNDRVESCDMSKLPAEDGSADVV 239

Query:   194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
             +FCLSLMG N  ++++EA+RVL+  G
Sbjct:   240 IFCLSLMGTNLYDFIKEARRVLRTGG 265

GO:0000183 "chromatin silencing at rDNA" evidence=ISS

GO:0005677 "chromatin silencing complex" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0033553 "rDNA heterochromatin" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!
4th Layer	2.1.1.145	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020651001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (263 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•			•		0.757
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•	•		•		0.717
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•					0.667
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•					0.659
	GSVIVG00024485001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (175 aa)				•			•		0.650
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•			•		0.649
	26N20_60	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (229 aa)				•	•				0.636
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•					0.630
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•					0.630
	GSVIVG00025475001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (188 aa)				•	•		•		0.626

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
pfam05148	219	pfam05148, Methyltransf_8, Hypothetical methyltran	2e-64
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	2e-07
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	9e-05
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	0.001

>gnl|CDD|203179 pfam05148, Methyltransf_8, Hypothetical methyltransferase

 Score =  198 bits (506), Expect = 2e-64
 Identities = 78/148 (52%), Positives = 99/148 (66%), Gaps = 2/148 (1%)

Query: 74  KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
           KM+ RL GG FRMLNEKLYT  G  A D F E+P  FD+YH G+  Q+  WP  P+++I+
Sbjct: 5   KMKKRLDGGRFRMLNEKLYTGKGSRAGDLFKEDPDAFDLYHEGFNLQVKKWPVNPLDVII 64

Query: 134 KWLKDHSPSLVIADFGCGDARLAKSVKN--KVFSFDLVSNDPSVIACDMSNTPLNSSSVD 191
           + LK    + VIAD GCG+AR+A   +    V SFDLV+ +  VI CDM+  PL   SVD
Sbjct: 65  RKLKRRPGNGVIADLGCGEARIAFRKREFENVHSFDLVAVNKRVIPCDMARVPLEDESVD 124

Query: 192 VAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           VAVFCLSLMG N  ++L+EA R+LK  G
Sbjct: 125 VAVFCLSLMGTNIADFLKEANRILKNGG 152

This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209. Length = 219

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 147 DFGCGDAR----LAKSVKNKVFSFDLVSN---------DPSVIACDMSNTPLNSSSVDVA 193
           D GCG       LA+    +V   DL                +  D  + P    S DV 
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDVV 61

Query: 194 VFCLSLMGINFPN-YLQEAQRVLKPRG 219
           V  L L  +  P   L+E  RVLKP G
Sbjct: 62  VSSLVLHHLPDPERALREIARVLKPGG 88

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 26/111 (23%)

Query: 133 VKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSV----------------- 175
           +  L    P   + D  CG   +A  +   V + ++V  D S                  
Sbjct: 44  ISLL-GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN 102

Query: 176 ---IACDMSNTPLNSSSVDVAVFCLSLMGINFPNY---LQEAQRVLKPRGE 220
              +  D  N P   +S D       L   N  +    L+E  RVLKP G 
Sbjct: 103 VEFVVGDAENLPFPDNSFDAVTISFGLR--NVTDIDKALKEMYRVLKPGGR 151

Length = 238

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 38.7 bits (87), Expect = 0.001
 Identities = 33/154 (21%), Positives = 50/154 (32%), Gaps = 29/154 (18%)

Query: 90  KLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFG 149
            L        L+ ++    L D +    +E +     L        L+     L + D G
Sbjct: 3   LLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLR------LLRLLPGGLGVLDIG 56

Query: 150 CGDARLAKSVKNKVFSFDLVSNDPS--------------------VIACDMSNTPL---N 186
           CG  RLA   +       +V  D S                     +  D     L   +
Sbjct: 57  CGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFED 116

Query: 187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGE 220
           S+S D+ +  L L  +     L+E  RVLKP G 
Sbjct: 117 SASFDLVISLLVLHLLPPAKALRELLRVLKPGGR 150

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	100.0
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.83
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.8
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.75
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.75
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.71
PLN02244	340	tocopherol O-methyltransferase	99.71
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.7
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.68
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.68
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.66
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.66
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.66
PRK05785	226	hypothetical protein; Provisional	99.65
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.65
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.65
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.64
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.64
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.63
PRK11207	197	tellurite resistance protein TehB; Provisional	99.63
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.62
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.61
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.61
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.6
PLN02336	475	phosphoethanolamine N-methyltransferase	99.6
PLN02490	340	MPBQ/MSBQ methyltransferase	99.58
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.57
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.57
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.55
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.55
KOG3010	261	consensus Methyltransferase [General function pred	99.55
PRK08317	241	hypothetical protein; Provisional	99.54
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.53
PRK06922	677	hypothetical protein; Provisional	99.52
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.52
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.52
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.51
PRK12335	287	tellurite resistance protein TehB; Provisional	99.51
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.5
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.5
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.5
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.49
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.49
KOG4300	252	consensus Predicted methyltransferase [General fun	99.49
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.49
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.49
PLN02336	475	phosphoethanolamine N-methyltransferase	99.48
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.47
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.44
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.44
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.43
PRK06202	232	hypothetical protein; Provisional	99.43
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.43
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.42
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.4
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.4
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.39
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.39
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.39
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.37
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.37
TIGR00438	188	rrmJ cell division protein FtsJ.	99.35
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.35
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.34
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.34
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.33
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.33
PLN03075	296	nicotianamine synthase; Provisional	99.33
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.29
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.29
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.29
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.28
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.25
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.25
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.23
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.23
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.23
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.23
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.22
PRK04266	226	fibrillarin; Provisional	99.21
PRK14967	223	putative methyltransferase; Provisional	99.2
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.2
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.18
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.17
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.17
PTZ00146	293	fibrillarin; Provisional	99.16
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.15
PRK14968	188	putative methyltransferase; Provisional	99.14
TIGR03438	301	probable methyltransferase. This model represents	99.14
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.13
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.13
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.11
KOG1271	227	consensus Methyltransferases [General function pre	99.08
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.08
PRK07402	196	precorrin-6B methylase; Provisional	99.07
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.07
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.06
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.05
KOG2940	325	consensus Predicted methyltransferase [General fun	99.05
COG4123	248	Predicted O-methyltransferase [General function pr	99.05
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.05
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	99.04
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.04
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.03
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.03
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.03
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.02
KOG2361	264	consensus Predicted methyltransferase [General fun	99.01
KOG1331	293	consensus Predicted methyltransferase [General fun	99.01
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.99
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.99
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.99
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.97
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.97
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.97
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.97
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.96
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.95
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.94
PRK04457	262	spermidine synthase; Provisional	98.94
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.94
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.93
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.93
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.9
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.9
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.88
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.88
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.87
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.87
PHA03411	279	putative methyltransferase; Provisional	98.87
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.87
PRK00811	283	spermidine synthase; Provisional	98.86
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.86
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.86
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.84
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.83
KOG2899	288	consensus Predicted methyltransferase [General fun	98.8
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.8
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.77
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.77
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.76
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.75
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.71
PHA03412	241	putative methyltransferase; Provisional	98.69
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.69
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.67
PRK01581	374	speE spermidine synthase; Validated	98.66
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.65
PLN02366	308	spermidine synthase	98.64
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.61
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.61
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.6
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.6
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.59
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.57
COG2890	280	HemK Methylase of polypeptide chain release factor	98.54
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.54
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.51
PLN02476	278	O-methyltransferase	98.51
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.5
PRK03612	521	spermidine synthase; Provisional	98.48
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.44
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.44
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.43
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.43
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.43
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.41
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.4
COG4122	219	Predicted O-methyltransferase [General function pr	98.38
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.38
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.38
PLN02672	1082	methionine S-methyltransferase	98.35
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.35
KOG2904	328	consensus Predicted methyltransferase [General fun	98.33
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.32
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.31
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.26
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.26
COG2521	287	Predicted archaeal methyltransferase [General func	98.24
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.23
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.22
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.22
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.21
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.2
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.2
PRK04148	134	hypothetical protein; Provisional	98.18
PLN02823	336	spermine synthase	98.18
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.18
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.17
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.17
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.12
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.07
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.03
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.0
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.95
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.93
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.9
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.86
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.84
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.82
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.81
PRK00536	262	speE spermidine synthase; Provisional	97.81
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.8
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.8
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.79
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.79
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.78
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.78
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.73
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.69
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.66
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.65
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.64
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.63
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.6
COG4076	252	Predicted RNA methylase [General function predicti	97.6
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.59
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.58
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.53
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.52
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.48
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	97.39
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.34
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.25
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.25
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.23
COG4798	238	Predicted methyltransferase [General function pred	97.15
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.15
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.14
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.12
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.12
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.1
COG3897	218	Predicted methyltransferase [General function pred	97.09
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.08
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	97.06
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.04
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.01
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.01
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.98
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.97
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.97
COG2520	341	Predicted methyltransferase [General function pred	96.95
KOG2730	263	consensus Methylase [General function prediction o	96.89
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.77
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.76
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.76
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.64
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.63
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.54
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.52
PF13679	141	Methyltransf_32: Methyltransferase domain	96.28
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.11
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.07
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	95.92
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.79
KOG3115	249	consensus Methyltransferase-like protein [General	95.61
KOG2920	282	consensus Predicted methyltransferase [General fun	95.6
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.57
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.55
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.47
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	95.39
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	95.39
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.26
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.03
PTZ00357	1072	methyltransferase; Provisional	94.92
COG4262	508	Predicted spermidine synthase with an N-terminal m	94.9
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.77
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.72
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.54
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	94.39
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	94.29
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	93.76
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.73
KOG4058	199	consensus Uncharacterized conserved protein [Funct	93.46
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	91.83
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	90.81
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	90.67
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	90.67
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	89.24
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	89.23
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	88.83
KOG2671	421	consensus Putative RNA methylase [Replication, rec	88.71
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	88.62
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	88.23
COG0286	489	HsdM Type I restriction-modification system methyl	87.74
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	87.72
PRK10742	250	putative methyltransferase; Provisional	87.59
PRK11524	284	putative methyltransferase; Provisional	87.55
COG4301	321	Uncharacterized conserved protein [Function unknow	86.92
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	86.91
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	86.64
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	86.2
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	85.57
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	85.3
PHA01634	156	hypothetical protein	84.79
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	84.75
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	84.19
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	84.03
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	83.72
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	83.37
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	81.63
KOG1501	636	consensus Arginine N-methyltransferase [General fu	81.58
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	81.32
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	80.64
PF08484	160	Methyltransf_14: C-methyltransferase C-terminal do	80.52
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	80.32

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=100.00  E-value=6.1e-40  Score=269.25  Aligned_cols=222  Identities=42%  Similarity=0.775  Sum_probs=184.6

Q ss_pred             ccchhhHHHhhhhccCCCCCCchhhhhhhhhhhh----hh------hhhcccccCCcchhhcccccchhhccCCCCCchH
Q 027441            2 KEGESRKRKRRRRHNSNSKPQDQESYQSKSTAKT----TA------KKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSF   71 (223)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (223)
                      ++++++|.|+|++.++|.+.++...+.+......    .+      .+++++-...++.+..+-+..+++.......+++
T Consensus        31 k~~~~kKkkKRkk~~rkl~~~k~A~~~e~v~~~p~g~~ak~~~~~n~~kk~r~~~kkkk~~p~~~a~~~~~t~~~~~~~l  110 (325)
T KOG3045|consen   31 KTKEEKKKKKRKKGERKLKAKKAAELKENVEEPPLGSEAKSSPKENSKKKRRNETKKKKEKPPEKAGAAAETEKTEATDL  110 (325)
T ss_pred             ccchhhhhhhhhhHHHhhhhhhhhhhhcCccCCCCcccCCCCCcccchhhccCcccccccCChhhhccccchhhhcccCH
Confidence            4678899999999988888887766665443331    11      1111111111111222222222233334578999


Q ss_pred             HHHHHchhcccccccccccccccCchHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccCCCCeEEEECCc
Q 027441           72 LDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCG  151 (223)
Q Consensus        72 ~~~~~~~~~~~~fr~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~~~~~ILDiGcG  151 (223)
                      ++.|...+-|++|||+|+++|++.+.+++.+|..++..|+.||.||+.++..||.+|++.|+++|...+...+|.|+|||
T Consensus       111 ~~km~~rL~ggrFR~lNEqLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCG  190 (325)
T KOG3045|consen  111 QAKMKKRLDGGRFRYLNEQLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCG  190 (325)
T ss_pred             HHHHHHhhcccceehhhhhhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998788999999999


Q ss_pred             chHHHHHhcCceEEEecCCCCCcEEEccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          152 DARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       152 ~G~~a~~la~~v~gvDis~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+.++......|+++|+.+.+.+++.||+.++|+++++.|++|+|.+||.+|+..++.|++|+|+|||.|+|
T Consensus       191 EakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~I  262 (325)
T KOG3045|consen  191 EAKIASSERHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYI  262 (325)
T ss_pred             hhhhhhccccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEE
Confidence            999998777899999999999999999999999999999999999999999999999999999999999986

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=100.00  E-value=8.8e-36  Score=239.67  Aligned_cols=154  Identities=60%  Similarity=1.084  Sum_probs=123.8

Q ss_pred             hHHHHHHchhcccccccccccccccCchHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccCCCCeEEEEC
Q 027441           70 SFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFG  149 (223)
Q Consensus        70 ~~~~~~~~~~~~~~fr~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~~~~~ILDiG  149 (223)
                      .+|++|+.++.|++||++||++|++++.++.++|..++++|+.||.||++++..||.+|++.|+++|...++...|.|+|
T Consensus         1 ~L~~~m~~kL~gsrFR~lNE~LYT~~s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~G   80 (219)
T PF05148_consen    1 SLQEKMREKLSGSRFRWLNEQLYTTSSEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFG   80 (219)
T ss_dssp             -------HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES
T ss_pred             ChHHHHHHHcccCchHHHHHhHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECC
Confidence            36889999999999999999999999999999999999999999999999999999999999999999886778999999


Q ss_pred             CcchHHHHHhcC--ceEEEecCCCCCcEEEccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          150 CGDARLAKSVKN--KVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       150 cG~G~~a~~la~--~v~gvDis~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||.+.++..+..  .|+.+|+.+.+..++++|+.++|++++++|++|+|.+||++|+..+|.|+.|+|||||.|+|
T Consensus        81 CGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~I  156 (219)
T PF05148_consen   81 CGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKI  156 (219)
T ss_dssp             -TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEE
T ss_pred             CchHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEE
Confidence            999999998874  59999999999999999999999999999999999999999999999999999999999986

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.83  E-value=3e-20  Score=154.46  Aligned_cols=92  Identities=24%  Similarity=0.436  Sum_probs=81.4

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      .+...+... ++.+|||||||||.++..++     .+|+|+|+|+               .++.|+.+|++++||+|++|
T Consensus        42 ~~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sF  120 (238)
T COG2226          42 ALISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSF  120 (238)
T ss_pred             HHHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCcc
Confidence            344444443 78999999999999999987     4899999997               23779999999999999999


Q ss_pred             eEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|+++++|+++ |++.+|.|++|||||||.+++
T Consensus       121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~v  154 (238)
T COG2226         121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLV  154 (238)
T ss_pred             CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEE
Confidence            999999999999 999999999999999998874

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.80  E-value=1.3e-19  Score=151.10  Aligned_cols=120  Identities=22%  Similarity=0.364  Sum_probs=69.2

Q ss_pred             HHHHhhcChHHHHHHHHhHHhh-hccCCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC-
Q 027441           99 ALDYFNENPALFDMYHSGYQEQ-MSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-  170 (223)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-  170 (223)
                      ....|+.-+..||....-..-. ...|..    .+.+.+... ++.+|||+|||||.++..++      .+|+|+|+|+ 
T Consensus         9 v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~----~~~~~~~~~-~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~   83 (233)
T PF01209_consen    9 VRKMFDRIAPRYDRMNDLLSFGQDRRWRR----KLIKLLGLR-PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG   83 (233)
T ss_dssp             ----------------------------S----HHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred             HHHHHHHHHHHhCCCccccCCcHHHHHHH----HHHhccCCC-CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence            3355666666666543221111 112433    334444433 67899999999999998876      3799999997 


Q ss_pred             --------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          171 --------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 --------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                                    .++.++++|++++|+++++||+|+++++++.+ |+..+|.|++|+|||||.|+|
T Consensus        84 ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~i  151 (233)
T PF01209_consen   84 MLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVI  151 (233)
T ss_dssp             HHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence                          37889999999999999999999999999988 999999999999999999875

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.75  E-value=1.5e-18  Score=123.34  Aligned_cols=78  Identities=31%  Similarity=0.427  Sum_probs=68.1

Q ss_pred             EEECCcchHHHHHhc----CceEEEecCC------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHH
Q 027441          146 ADFGCGDARLAKSVK----NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYL  208 (223)
Q Consensus       146 LDiGcG~G~~a~~la----~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l  208 (223)
                      ||+|||+|..+..++    .+|+++|+++            ..+.+..+|+.++|+++++||+|++..++||+ ++..++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l   80 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL   80 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence            899999999999887    4699999997            34458999999999999999999999999999 889999


Q ss_pred             HHHHHccCCCCEEEc
Q 027441          209 QEAQRVLKPRGEEQI  223 (223)
Q Consensus       209 ~e~~rvLkpgG~lvi  223 (223)
                      .++.|+|||||+++|
T Consensus        81 ~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   81 REIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHEEEEEEEEE
T ss_pred             HHHHHHcCcCeEEeC
Confidence            999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.75  E-value=1.5e-17  Score=141.05  Aligned_cols=84  Identities=26%  Similarity=0.371  Sum_probs=75.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC------------------CCCcEEEccCCCCCCCCCceeEEEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS------------------NDPSVIACDMSNTPLNSSSVDVAVF  195 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~------------------~~~~~~~~d~~~lp~~~~sfD~Vi~  195 (223)
                      .++.+|||||||+|.++..++      .+|+|+|+|+                  .++.++.+|+..+|+++++||+|++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~  151 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM  151 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence            367899999999999887765      3799999996                  1467889999999999999999999


Q ss_pred             cccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+++||+ ++..++.++.|+|||||.|+|
T Consensus       152 ~~~l~~~~d~~~~l~ei~rvLkpGG~l~i  180 (261)
T PLN02233        152 GYGLRNVVDRLKAMQEMYRVLKPGSRVSI  180 (261)
T ss_pred             ecccccCCCHHHHHHHHHHHcCcCcEEEE
Confidence            9999999 999999999999999999875

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.71  E-value=8e-17  Score=135.53  Aligned_cols=93  Identities=24%  Similarity=0.391  Sum_probs=80.1

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      +.+++.+... +..+|||+|||+|.++..++   .+|+++|+|+          ....++.+|++.+|+++++||+|++.
T Consensus        32 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~  110 (251)
T PRK10258         32 DALLAMLPQR-KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSN  110 (251)
T ss_pred             HHHHHhcCcc-CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEEC
Confidence            4555555543 56789999999999988886   5899999997          23468899999999999999999999


Q ss_pred             ccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+++|+ ++..+|.++.++|+|||.|++
T Consensus       111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~  138 (251)
T PRK10258        111 LAVQWCGNLSTALRELYRVVRPGGVVAF  138 (251)
T ss_pred             chhhhcCCHHHHHHHHHHHcCCCeEEEE
Confidence            999998 999999999999999999975

>PLN02244 tocopherol O-methyltransferase

Probab=99.71  E-value=8.3e-17  Score=141.42  Aligned_cols=83  Identities=24%  Similarity=0.303  Sum_probs=75.9

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+++                .++.++++|+.++|+++++||+|++..+++
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~  197 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE  197 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence            56899999999999988876    4899999996                257889999999999999999999999999


Q ss_pred             CC-CHHHHHHHHHHccCCCCEEEc
Q 027441          201 GI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+ |...++.++.|+|+|||.|+|
T Consensus       198 h~~d~~~~l~e~~rvLkpGG~lvi  221 (340)
T PLN02244        198 HMPDKRKFVQELARVAAPGGRIII  221 (340)
T ss_pred             ccCCHHHHHHHHHHHcCCCcEEEE
Confidence            99 999999999999999999985

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.70  E-value=7.5e-17  Score=136.17  Aligned_cols=92  Identities=15%  Similarity=0.191  Sum_probs=78.6

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      ..+++.+... ++.+|||||||+|.++..++     .+|+|+|+|+        .++.++.+|+..++ ++++||+|++.
T Consensus        19 ~~ll~~l~~~-~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~~   96 (255)
T PRK14103         19 YDLLARVGAE-RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVVVSN   96 (255)
T ss_pred             HHHHHhCCCC-CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEEe
Confidence            3455555543 67899999999999998886     3799999997        46788999998875 56799999999


Q ss_pred             ccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .++||+ ++..++.++.++|+|||.|+|
T Consensus        97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~  124 (255)
T PRK14103         97 AALQWVPEHADLLVRWVDELAPGSWIAV  124 (255)
T ss_pred             hhhhhCCCHHHHHHHHHHhCCCCcEEEE
Confidence            999999 899999999999999999975

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.68  E-value=8.1e-17  Score=140.10  Aligned_cols=83  Identities=16%  Similarity=0.263  Sum_probs=75.1

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+|||||||+|.++..++   .+|+|+|+++                .++.++++|++++|+.+++||+|++..+++|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            45699999999999999887   4799999996                1567888999999888889999999999999


Q ss_pred             C-CHHHHHHHHHHccCCCCEEEc
Q 027441          202 I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      + |+..++.++.++|+|||.|+|
T Consensus       211 v~d~~~~L~~l~r~LkPGG~lii  233 (322)
T PLN02396        211 VANPAEFCKSLSALTIPNGATVL  233 (322)
T ss_pred             cCCHHHHHHHHHHHcCCCcEEEE
Confidence            9 999999999999999999985

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.68  E-value=7e-17  Score=137.68  Aligned_cols=139  Identities=16%  Similarity=0.347  Sum_probs=94.3

Q ss_pred             HHchhcccccccccccccccCchHHHHHhh------------------cChHHHHHHHHhHHhhhccCCCchHHHHHHHH
Q 027441           75 MRARLSGGHFRMLNEKLYTCTGKEALDYFN------------------ENPALFDMYHSGYQEQMSHWPELPVNIIVKWL  136 (223)
Q Consensus        75 ~~~~~~~~~fr~~~e~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l  136 (223)
                      +.||.|++.+.. ....+.|+..+.++...                  .+..++... ..|...  .......+.+...+
T Consensus         3 ~~CP~C~~~l~~-~~~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar-~~fl~~--g~y~~l~~~i~~~l   78 (272)
T PRK11088          3 YQCPLCHQPLTL-EENSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQAR-RAFLDA--GHYQPLRDAVANLL   78 (272)
T ss_pred             ccCCCCCcchhc-CCCEEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHH-HHHHHC--CChHHHHHHHHHHH
Confidence            689999999854 45677787776663332                  122222211 111111  11111223443444


Q ss_pred             hcc--CCCCeEEEECCcchHHHHHhcC--------ceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          137 KDH--SPSLVIADFGCGDARLAKSVKN--------KVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       137 ~~~--~~~~~ILDiGcG~G~~a~~la~--------~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      ...  ....+|||+|||+|.++..++.        .|+|+|+|+          .++.+.++|+.++|+++++||+|++.
T Consensus        79 ~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~  158 (272)
T PRK11088         79 AERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI  158 (272)
T ss_pred             HHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe
Confidence            322  2447899999999998887751        579999997          46778999999999999999999987


Q ss_pred             ccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++      +..+.++.|+|+|||+|++
T Consensus       159 ~~------~~~~~e~~rvLkpgG~li~  179 (272)
T PRK11088        159 YA------PCKAEELARVVKPGGIVIT  179 (272)
T ss_pred             cC------CCCHHHHHhhccCCCEEEE
Confidence            65      4457899999999999975

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.66  E-value=6.1e-16  Score=128.38  Aligned_cols=92  Identities=20%  Similarity=0.359  Sum_probs=78.2

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      .++..+... ++.+|||+|||+|.++..++      .+|+|+|+++               .++.++.+|+..+++++++
T Consensus        36 ~~l~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  114 (231)
T TIGR02752        36 DTMKRMNVQ-AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS  114 (231)
T ss_pred             HHHHhcCCC-CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence            445555433 67899999999999888775      3799999996               2567888999999988899


Q ss_pred             eeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++.++++|+ ++..++.++.++|+|||.|++
T Consensus       115 fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~  149 (231)
T TIGR02752       115 FDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVC  149 (231)
T ss_pred             ccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence            9999999999998 889999999999999999874

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.66  E-value=3e-16  Score=136.83  Aligned_cols=92  Identities=16%  Similarity=0.214  Sum_probs=79.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      +.+..++... .+.+|||||||+|.++..++    ..|+|+|+|+                .++.++.+|++++|+ +++
T Consensus       112 ~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~  189 (322)
T PRK15068        112 DRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA  189 (322)
T ss_pred             HHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence            4455566544 57899999999999988876    3699999986                246788899999998 789


Q ss_pred             eeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|+|..+++|. ++..+|.+++++|+|||.|+|
T Consensus       190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl  224 (322)
T PRK15068        190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVL  224 (322)
T ss_pred             cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEE
Confidence            9999999999999 899999999999999999975

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.66  E-value=7.4e-16  Score=127.33  Aligned_cols=93  Identities=23%  Similarity=0.350  Sum_probs=79.9

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----------CceEEEecCC------------------CCCcEEEccC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----------NKVFSFDLVS------------------NDPSVIACDM  180 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----------~~v~gvDis~------------------~~~~~~~~d~  180 (223)
                      +.+...+... .+.++||++||||-++..+.           .+|+++|+++                  ..+.++++|+
T Consensus        90 d~~v~~L~p~-~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA  168 (296)
T KOG1540|consen   90 DMFVSKLGPG-KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA  168 (296)
T ss_pred             HHhhhccCCC-CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence            4455555544 67999999999999888775           3799999997                  2367889999


Q ss_pred             CCCCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          181 SNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       181 ~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.+||++++||+.++.+.+..+ +++++|+|++|||||||.|.+
T Consensus       169 E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  169 EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence            9999999999999999999966 999999999999999999864

>PRK05785 hypothetical protein; Provisional

Probab=99.65  E-value=5.6e-16  Score=128.81  Aligned_cols=79  Identities=20%  Similarity=0.287  Sum_probs=70.4

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCCC-------CCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHH
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYL  208 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~-------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l  208 (223)
                      ++.+|||||||||.++..++    .+|+|+|+|+.       ...++++|++.+|+++++||+|++.+++||+ |++.++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l  130 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVI  130 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence            46899999999999988876    37999999982       3456889999999999999999999999999 999999


Q ss_pred             HHHHHccCCCC
Q 027441          209 QEAQRVLKPRG  219 (223)
Q Consensus       209 ~e~~rvLkpgG  219 (223)
                      .|+.|+|||.+
T Consensus       131 ~e~~RvLkp~~  141 (226)
T PRK05785        131 AEFTRVSRKQV  141 (226)
T ss_pred             HHHHHHhcCce
Confidence            99999999954

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.65  E-value=9.7e-16  Score=129.37  Aligned_cols=92  Identities=14%  Similarity=0.241  Sum_probs=77.1

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAV  194 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi  194 (223)
                      ..++..+... ++.+|||||||+|.++..++     .+|+|+|+|+          .++.+..+|+..++ ++.+||+|+
T Consensus        21 ~~ll~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~   98 (258)
T PRK01683         21 RDLLARVPLE-NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIF   98 (258)
T ss_pred             HHHHhhCCCc-CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEE
Confidence            3455555433 67899999999999988876     4799999997          46778889988765 456899999


Q ss_pred             EcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +..++||+ |+..++.++.++|+|||.|++
T Consensus        99 ~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~  128 (258)
T PRK01683         99 ANASLQWLPDHLELFPRLVSLLAPGGVLAV  128 (258)
T ss_pred             EccChhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence            99999999 999999999999999999875

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.65  E-value=1.1e-16  Score=131.81  Aligned_cols=83  Identities=19%  Similarity=0.334  Sum_probs=71.1

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCCCC--------------CcEEEccCCCCCCCCCceeEEEEcccccCC-
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSND--------------PSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~~--------------~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-  202 (223)
                      ++.+|||||||.|.+++.+|   ..|+|+|+++.+              +++....++++....++||+|+|..+++|+ 
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            68999999999999999998   689999999833              334445555555445899999999999999 


Q ss_pred             CHHHHHHHHHHccCCCCEEEc
Q 027441          203 NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+..++..+.+++||||.+++
T Consensus       139 dp~~~~~~c~~lvkP~G~lf~  159 (243)
T COG2227         139 DPESFLRACAKLVKPGGILFL  159 (243)
T ss_pred             CHHHHHHHHHHHcCCCcEEEE
Confidence            999999999999999999975

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.64  E-value=2.4e-16  Score=122.81  Aligned_cols=93  Identities=23%  Similarity=0.397  Sum_probs=75.3

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC-----CCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN-----DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~-----~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                      .+...+....++.+|||||||+|.++..++   .+|+|+|+++.     .......+....+.++++||+|+|+.+++|+
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~   91 (161)
T PF13489_consen   12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL   91 (161)
T ss_dssp             HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred             HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence            333344324478999999999999999887   48999999973     3344444445566678999999999999999


Q ss_pred             -CHHHHHHHHHHccCCCCEEEc
Q 027441          203 -NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 -d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       |+..+|.++.++|+|||+|+|
T Consensus        92 ~d~~~~l~~l~~~LkpgG~l~~  113 (161)
T PF13489_consen   92 PDPEEFLKELSRLLKPGGYLVI  113 (161)
T ss_dssp             SHHHHHHHHHHHCEEEEEEEEE
T ss_pred             ccHHHHHHHHHHhcCCCCEEEE
Confidence             899999999999999999986

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.64  E-value=6.7e-16  Score=130.42  Aligned_cols=83  Identities=24%  Similarity=0.361  Sum_probs=72.8

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCC-CCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTP-LNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||+|||+|.++..++   .+|+++|+|+                .++.++.+|+.+++ +.+++||+|++..+++
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~  123 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLE  123 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHH
Confidence            45799999999999999887   5799999996                24578888887764 5678999999999999


Q ss_pred             CC-CHHHHHHHHHHccCCCCEEEc
Q 027441          201 GI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+ ++..++.++.++|+|||+|+|
T Consensus       124 ~~~~~~~~l~~~~~~LkpgG~l~i  147 (255)
T PRK11036        124 WVADPKSVLQTLWSVLRPGGALSL  147 (255)
T ss_pred             hhCCHHHHHHHHHHHcCCCeEEEE
Confidence            99 899999999999999999974

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.63  E-value=9.8e-16  Score=130.13  Aligned_cols=93  Identities=17%  Similarity=0.218  Sum_probs=79.1

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      ..++..+... ++.+|||||||+|..+..++    .+|+|+|+++             .++.+..+|+...|+++++||+
T Consensus        42 ~~~l~~l~l~-~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~  120 (263)
T PTZ00098         42 TKILSDIELN-ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDM  120 (263)
T ss_pred             HHHHHhCCCC-CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEE
Confidence            4555555433 77899999999999888775    4899999996             2477888999999999999999


Q ss_pred             EEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..+++|+   ++..+|.++.++|+|||.|+|
T Consensus       121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi  154 (263)
T PTZ00098        121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI  154 (263)
T ss_pred             EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            9999998887   677999999999999999985

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.63  E-value=1.4e-15  Score=123.93  Aligned_cols=95  Identities=20%  Similarity=0.296  Sum_probs=77.9

Q ss_pred             CchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCC
Q 027441          126 ELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNS  187 (223)
Q Consensus       126 ~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~  187 (223)
                      ..+...+++.+... ++.+|||+|||+|..+..|+   .+|+|+|+|+               .++.+.+.|+..++++ 
T Consensus        16 ~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-   93 (197)
T PRK11207         16 TRTHSEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-   93 (197)
T ss_pred             CCChHHHHHhcccC-CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-
Confidence            34445667777655 56899999999999999998   4799999997               2466778888887774 


Q ss_pred             CceeEEEEcccccCCC---HHHHHHHHHHccCCCCEEE
Q 027441          188 SSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lv  222 (223)
                      ++||+|++..++||++   ...++.++.++|+|||.++
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~  131 (197)
T PRK11207         94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNL  131 (197)
T ss_pred             CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            6799999999999884   5699999999999999864

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.62  E-value=3.9e-15  Score=123.20  Aligned_cols=93  Identities=28%  Similarity=0.439  Sum_probs=78.3

Q ss_pred             HHHHHHhcc--CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------CCCcEEEccCCCCCCCCCceeE
Q 027441          131 IIVKWLKDH--SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      .+++.+...  ....+|||||||+|.++..++     .+++++|+++           .++.++.+|+...|+++++||+
T Consensus        22 ~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  101 (240)
T TIGR02072        22 RLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDL  101 (240)
T ss_pred             HHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeE
Confidence            344444432  234789999999999888886     3579999996           3568899999999988999999


Q ss_pred             EEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..++||+ ++..++.++.++|+|||.|++
T Consensus       102 vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~  133 (240)
T TIGR02072       102 IVSNLALQWCDDLSQALSELARVLKPGGLLAF  133 (240)
T ss_pred             EEEhhhhhhccCHHHHHHHHHHHcCCCcEEEE
Confidence            9999999999 999999999999999999975

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.61  E-value=1.2e-15  Score=119.05  Aligned_cols=82  Identities=27%  Similarity=0.431  Sum_probs=72.8

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC--CCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~  197 (223)
                      .+.+|||+|||+|.++..++      .+++|+|+++               .++.|.++|+.+++  ++ ..||+|++..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence            56899999999999888877      4799999997               46899999999987  65 8999999999


Q ss_pred             cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++|+ ++..++.++.++|++||.+++
T Consensus        82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~  108 (152)
T PF13847_consen   82 VLHHFPDPEKVLKNIIRLLKPGGILII  108 (152)
T ss_dssp             TGGGTSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhccCHHHHHHHHHHHcCCCcEEEE
Confidence            99999 788999999999999999985

...

>TIGR00452 methyltransferase, putative

Probab=99.61  E-value=1.7e-15  Score=131.32  Aligned_cols=92  Identities=14%  Similarity=0.115  Sum_probs=75.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      +.++.++... ++.+|||||||+|.++..++    ..|+|+|+|+                ..+.+..++++.+|.. .+
T Consensus       111 ~~~l~~l~~~-~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~  188 (314)
T TIGR00452       111 DRVLPHLSPL-KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YA  188 (314)
T ss_pred             HHHHHhcCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CC
Confidence            3455555444 67899999999999887765    3699999987                1345667788888764 58


Q ss_pred             eeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|+|..+++|+ ++..+|.+++++|+|||.|+|
T Consensus       189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvl  223 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVL  223 (314)
T ss_pred             cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEE
Confidence            9999999999999 899999999999999999985

Known examples to date are restricted to the proteobacteria.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.60  E-value=3.8e-15  Score=121.13  Aligned_cols=95  Identities=20%  Similarity=0.267  Sum_probs=75.5

Q ss_pred             chHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC--------------CCcEEEccCCCCCCCCCc
Q 027441          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       127 ~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~--------------~~~~~~~d~~~lp~~~~s  189 (223)
                      .....+...+... ++.+|||+|||+|.++..++   ..|+|+|+|+.              .+.+..+|+...+++ .+
T Consensus        17 ~~~~~l~~~~~~~-~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~   94 (195)
T TIGR00477        17 TTHSAVREAVKTV-APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-ED   94 (195)
T ss_pred             CchHHHHHHhccC-CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CC
Confidence            3345666776655 46799999999999999987   47999999971              345666777666664 57


Q ss_pred             eeEEEEcccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|+++.++||++   .+.++.++.++|+|||+++|
T Consensus        95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477        95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            99999999999883   46899999999999998553

Part of a tellurite-reducing operon tehA and tehB

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.60  E-value=4.3e-15  Score=135.85  Aligned_cols=92  Identities=23%  Similarity=0.258  Sum_probs=78.4

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      .+++.+.. .++.+|||||||+|.++..++    .+|+|+|+|+              .++.|..+|+..+++++++||+
T Consensus       257 ~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  335 (475)
T PLN02336        257 EFVDKLDL-KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDV  335 (475)
T ss_pred             HHHHhcCC-CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEE
Confidence            34444432 367899999999999887776    4799999995              2467889999999988899999


Q ss_pred             EEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|..+++|+ ++..++.+++|+|+|||.|+|
T Consensus       336 I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i  367 (475)
T PLN02336        336 IYSRDTILHIQDKPALFRSFFKWLKPGGKVLI  367 (475)
T ss_pred             EEECCcccccCCHHHHHHHHHHHcCCCeEEEE
Confidence            9999999999 999999999999999999985

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.58  E-value=7.2e-15  Score=128.57  Aligned_cols=84  Identities=23%  Similarity=0.243  Sum_probs=74.6

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                      .++.+|||||||+|.++..++     .+|+++|+++            .++.++.+|++.+|+++++||+|+++.+++|+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence            356899999999999877765     4799999986            35778899999999999999999999999988


Q ss_pred             -CHHHHHHHHHHccCCCCEEEc
Q 027441          203 -NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 -d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       ++..+|.++.|+|+|||.|+|
T Consensus       192 ~d~~~~L~e~~rvLkPGG~LvI  213 (340)
T PLN02490        192 PDPQRGIKEAYRVLKIGGKACL  213 (340)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEE
Confidence             889999999999999999864

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.57  E-value=4.7e-15  Score=109.17  Aligned_cols=82  Identities=23%  Similarity=0.409  Sum_probs=67.9

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccC-CCCCCCCCceeEEEEcc-
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDM-SNTPLNSSSVDVAVFCL-  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~-~~lp~~~~sfD~Vi~~~-  197 (223)
                      |+.+|||||||+|.++..++     .+|+|+|+++                .++.++.+|+ ..... ...||+|++.. 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence            56899999999999988887     5799999997                5788999999 33333 35699999999 


Q ss_pred             cccCC----CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .++++    +...++..+.+.|+|||+|+|
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence            56644    346999999999999999986

...

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.57  E-value=1.7e-15  Score=125.72  Aligned_cols=79  Identities=23%  Similarity=0.351  Sum_probs=65.9

Q ss_pred             CCeEEEECCcchHHHHHhc---CceEEEecCCC---------------------CCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------------DPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la---~~v~gvDis~~---------------------~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      +.+|||+|||+|.+++.|+   +.|+|+|+++.                     .+.+...+++.+.   +.||+|+|+.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence            3779999999999999998   68999999972                     1233344444432   4499999999


Q ss_pred             cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++|+ |++.++..+.++|+|||.|+|
T Consensus       167 vleHV~dp~~~l~~l~~~lkP~G~lfi  193 (282)
T KOG1270|consen  167 VLEHVKDPQEFLNCLSALLKPNGRLFI  193 (282)
T ss_pred             HHHHHhCHHHHHHHHHHHhCCCCceEe
Confidence            99999 999999999999999999986

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.55  E-value=1.7e-14  Score=122.79  Aligned_cols=84  Identities=25%  Similarity=0.312  Sum_probs=73.4

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      .++.+|||||||+|.++..++      .+|+++|+++               .++.+..+|+..+|+++++||+|++..+
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v  155 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV  155 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence            377899999999998665443      3699999986               3567888999999998899999999999


Q ss_pred             ccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++|. +.+.++.++.++|+|||.|+|
T Consensus       156 ~~~~~d~~~~l~~~~r~LkpGG~l~i  181 (272)
T PRK11873        156 INLSPDKERVFKEAFRVLKPGGRFAI  181 (272)
T ss_pred             ccCCCCHHHHHHHHHHHcCCCcEEEE
Confidence            9988 889999999999999999975

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.55  E-value=3.3e-14  Score=116.88  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----CCCcEEEccCCCCC--------CCCCceeE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----~~~~~~~~d~~~lp--------~~~~sfD~  192 (223)
                      .+.+.+....++.+|||||||+|.++..++      ..|+|+|+++    .++.++.+|+.+.+        +.+++||+
T Consensus        41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~  120 (209)
T PRK11188         41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQV  120 (209)
T ss_pred             HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence            444444433467899999999999988775      3799999997    46788999998853        67789999


Q ss_pred             EEEcccccCC-CH-----------HHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-NF-----------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-d~-----------~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..+.++. ++           ..+|.++.++|+|||.|+|
T Consensus       121 V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi  163 (209)
T PRK11188        121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV  163 (209)
T ss_pred             EecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            9998887765 22           3689999999999999985

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.55  E-value=1.4e-14  Score=118.87  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=74.0

Q ss_pred             cCCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC---------CC-------cEEEccCCCC
Q 027441          123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------DP-------SVIACDMSNT  183 (223)
Q Consensus       123 ~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~---------~~-------~~~~~d~~~l  183 (223)
                      ..|.+|.+.+............++|+|||+|..++.++   .+|+|+|+|+.         ++       .+...++..|
T Consensus        15 ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L   94 (261)
T KOG3010|consen   15 ARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL   94 (261)
T ss_pred             cCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc
Confidence            45677766655554444334599999999998888887   68999999971         11       1222223333


Q ss_pred             CCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCC-EEE
Q 027441          184 PLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG-EEQ  222 (223)
Q Consensus       184 p~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG-~lv  222 (223)
                      --.++++|+|+|..++||+|.++++.+++|+||+.| ++.
T Consensus        95 ~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~ia  134 (261)
T KOG3010|consen   95 LGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIA  134 (261)
T ss_pred             cCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence            333899999999999999999999999999999866 654

>PRK08317 hypothetical protein; Provisional

Probab=99.54  E-value=3.4e-14  Score=117.41  Aligned_cols=92  Identities=23%  Similarity=0.330  Sum_probs=77.8

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC--------------CCCcEEEccCCCCCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      .++..+... ++.+|||+|||+|.++..++      .+|+|+|+++              .++.+..+|+..+++.+++|
T Consensus        10 ~~~~~~~~~-~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   88 (241)
T PRK08317         10 RTFELLAVQ-PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF   88 (241)
T ss_pred             HHHHHcCCC-CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence            344444433 67899999999999888775      3799999996              24677888998888888999


Q ss_pred             eEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++..+++|+ ++..++.++.++|+|||.|++
T Consensus        89 D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  122 (241)
T PRK08317         89 DAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV  122 (241)
T ss_pred             eEEEEechhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence            999999999999 999999999999999999874

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.53  E-value=9.7e-15  Score=105.53  Aligned_cols=76  Identities=24%  Similarity=0.336  Sum_probs=47.9

Q ss_pred             EEECCcchHHHHHhc-----CceEEEecCCCCC---------------cEEEccCCCCC--CCCCceeEEEEcccccCC-
Q 027441          146 ADFGCGDARLAKSVK-----NKVFSFDLVSNDP---------------SVIACDMSNTP--LNSSSVDVAVFCLSLMGI-  202 (223)
Q Consensus       146 LDiGcG~G~~a~~la-----~~v~gvDis~~~~---------------~~~~~d~~~lp--~~~~sfD~Vi~~~~l~~~-  202 (223)
                      ||||||+|.++..+.     .+++|+|+|+..+               ..+..+..+..  ...++||+|++..++||+ 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            799999999888876     5799999998332               12222222221  112599999999999999 


Q ss_pred             CHHHHHHHHHHccCCCCEE
Q 027441          203 NFPNYLQEAQRVLKPRGEE  221 (223)
Q Consensus       203 d~~~~l~e~~rvLkpgG~l  221 (223)
                      ++..++..+.++|+|||.|
T Consensus        81 ~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -HHHHHHHHTTT-TSS-EE
T ss_pred             hHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK06922 hypothetical protein; Provisional

Probab=99.52  E-value=7e-14  Score=129.94  Aligned_cols=83  Identities=28%  Similarity=0.392  Sum_probs=70.9

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC--CCCCceeEEEEcccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSL  199 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~l  199 (223)
                      ++.+|||||||+|.++..++     ..|+|+|+|+              .++.++++|+.++|  +++++||+|+++.++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL  497 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL  497 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence            67899999999999887775     4899999997              13456788988887  788999999999999


Q ss_pred             cCC--------------CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI--------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~--------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+              ++..+|.++.++|+|||.++|
T Consensus       498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII  535 (677)
T PRK06922        498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII  535 (677)
T ss_pred             HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence            864              346999999999999999986

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.52  E-value=3.8e-14  Score=120.66  Aligned_cols=94  Identities=18%  Similarity=0.261  Sum_probs=78.6

Q ss_pred             hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCc--EEEccCCCCCCCC
Q 027441          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPS--VIACDMSNTPLNS  187 (223)
Q Consensus       128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~--~~~~d~~~lp~~~  187 (223)
                      ..+.+..++.+. .+.+|||||||.|+++..++    ..|+|+|.++              ....  ++-..++.+|. .
T Consensus       103 KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~  180 (315)
T PF08003_consen  103 KWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L  180 (315)
T ss_pred             hHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence            347788888766 78999999999999998776    4799999997              1222  22246678887 7


Q ss_pred             CceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.||+|+|.+||+|. +|-..|.++...|+|||.|++
T Consensus       181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvL  217 (315)
T PF08003_consen  181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVL  217 (315)
T ss_pred             CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEE
Confidence            899999999999999 999999999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.52  E-value=1.5e-14  Score=123.32  Aligned_cols=81  Identities=26%  Similarity=0.379  Sum_probs=64.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||||||.|.++..++    .+|+|+.+|+                ..+.+..+|..+++.   +||.|++..++
T Consensus        61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~  137 (273)
T PF02353_consen   61 KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMF  137 (273)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEG
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEech
Confidence            488999999999999999998    5899999996                356788888877654   89999999999


Q ss_pred             cCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+   +++.++..+.++|+|||.+++
T Consensus       138 Ehvg~~~~~~~f~~~~~~LkpgG~~~l  164 (273)
T PF02353_consen  138 EHVGRKNYPAFFRKISRLLKPGGRLVL  164 (273)
T ss_dssp             GGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred             hhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence            999   678999999999999999975

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.51  E-value=5.4e-14  Score=118.35  Aligned_cols=81  Identities=21%  Similarity=0.349  Sum_probs=69.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-------CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      ++.+|||||||+|..+..++       .+|+|+|+|+                .++.++.+|+..+|++  .+|+|++..
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~  133 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF  133 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence            66899999999999877654       3799999997                2578889999888865  489999999


Q ss_pred             cccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++||++   ...++.+++++|+|||.|++
T Consensus       134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l  162 (247)
T PRK15451        134 TLQFLEPSERQALLDKIYQGLNPGGALVL  162 (247)
T ss_pred             HHHhCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            999994   35899999999999999975

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.51  E-value=6.2e-14  Score=120.49  Aligned_cols=90  Identities=18%  Similarity=0.269  Sum_probs=72.3

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEE
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAV  194 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi  194 (223)
                      ++..+... +..+|||||||+|..+.+++   .+|+|+|+|+              .++.+...|+...++ +++||+|+
T Consensus       112 ~~~~~~~~-~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~  189 (287)
T PRK12335        112 VLEAVQTV-KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFIL  189 (287)
T ss_pred             HHHHhhcc-CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEE
Confidence            34444333 45699999999999999887   5899999997              245667778877665 67899999


Q ss_pred             EcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +..++||+   +.+.++.++.++|+|||++++
T Consensus       190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            99999998   456899999999999999653

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.50  E-value=5.6e-14  Score=119.22  Aligned_cols=90  Identities=22%  Similarity=0.354  Sum_probs=75.1

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      +.+.+.+... ++.+|||||||.|.++.+++    .+|+|+++|+                .++++...|..+++   +.
T Consensus        62 ~~~~~kl~L~-~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~  137 (283)
T COG2230          62 DLILEKLGLK-PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EP  137 (283)
T ss_pred             HHHHHhcCCC-CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cc
Confidence            4444544444 89999999999999999998    5799999997                35667777776665   44


Q ss_pred             eeEEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||-|++..+++|+   +++.+|..+.++|+|||.+++
T Consensus       138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ll  174 (283)
T COG2230         138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLL  174 (283)
T ss_pred             cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEE
Confidence            9999999999999   689999999999999999874

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.50  E-value=1e-13  Score=114.21  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=79.7

Q ss_pred             HHhhhccCC-CchHHHHHHHHhcc--CCCCeEEEECCcchHHHHHhc---CceEEEecCCC-------------------
Q 027441          117 YQEQMSHWP-ELPVNIIVKWLKDH--SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN-------------------  171 (223)
Q Consensus       117 ~~~~~~~~p-~~~~~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~-------------------  171 (223)
                      |......|. ..+...+.+++...  +++.+|||+|||.|..+.+|+   -.|+|+|+|+.                   
T Consensus         7 y~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~   86 (213)
T TIGR03840         7 WQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQG   86 (213)
T ss_pred             HhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccc
Confidence            333333453 33444555555432  366899999999999999999   37999999972                   


Q ss_pred             --------CCcEEEccCCCCCCC-CCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEE
Q 027441          172 --------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       172 --------~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lv  222 (223)
                              ++.+.++|+..++.. ...||.|+...+++|+++   +.++..+.++|+|||+++
T Consensus        87 ~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~l  149 (213)
T TIGR03840        87 EFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQL  149 (213)
T ss_pred             cceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEE
Confidence                    256688999887643 467999999999999944   479999999999999754

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.50  E-value=1.3e-13  Score=112.85  Aligned_cols=90  Identities=16%  Similarity=0.233  Sum_probs=71.2

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVF  195 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~  195 (223)
                      .+...+...+++.+|||||||+|.++..|+     .+++|+|+|+          .++.+..+|+.. |+++++||+|++
T Consensus        33 ~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~  111 (204)
T TIGR03587        33 MFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLT  111 (204)
T ss_pred             HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEE
Confidence            344444444467889999999999888775     4699999997          356788889887 888999999999


Q ss_pred             cccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+++|++   ...++.++.|++  ++.++|
T Consensus       112 ~~vL~hl~p~~~~~~l~el~r~~--~~~v~i  140 (204)
T TIGR03587       112 KGVLIHINPDNLPTAYRELYRCS--NRYILI  140 (204)
T ss_pred             CChhhhCCHHHHHHHHHHHHhhc--CcEEEE
Confidence            99999995   458888888887  355543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.49  E-value=5e-14  Score=116.35  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=68.8

Q ss_pred             eEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441          144 VIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       144 ~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                      +|||||||+|.++..++     .+|+|+|+|+                .++.++.+|+...|++ ++||+|++..+++|+
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~   80 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI   80 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence            69999999999888776     3689999986                2457888888776764 589999999999999


Q ss_pred             -CHHHHHHHHHHccCCCCEEEc
Q 027441          203 -NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 -d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       ++..+|.++.++|+|||.|++
T Consensus        81 ~~~~~~l~~~~~~LkpgG~l~i  102 (224)
T smart00828       81 KDKMDLFSNISRHLKDGGHLVL  102 (224)
T ss_pred             CCHHHHHHHHHHHcCCCCEEEE
Confidence             999999999999999999975

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.49  E-value=1.6e-14  Score=105.04  Aligned_cols=75  Identities=25%  Similarity=0.553  Sum_probs=62.5

Q ss_pred             EEEECCcchHHHHHhc--------CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcc-cccC
Q 027441          145 IADFGCGDARLAKSVK--------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCL-SLMG  201 (223)
Q Consensus       145 ILDiGcG~G~~a~~la--------~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~-~l~~  201 (223)
                      |||+|||+|..+..+.        .+++|+|+++              ..+.++++|+.++++.+++||+|++++ +++|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999887765        4789999997              367899999999998889999999954 4999


Q ss_pred             CC---HHHHHHHHHHccCCCC
Q 027441          202 IN---FPNYLQEAQRVLKPRG  219 (223)
Q Consensus       202 ~d---~~~~l~e~~rvLkpgG  219 (223)
                      ++   ...+++++.++|+|||
T Consensus        81 ~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCC
Confidence            94   5699999999999998

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.49  E-value=1.2e-13  Score=111.09  Aligned_cols=83  Identities=27%  Similarity=0.339  Sum_probs=72.7

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCc-EEEccCCCCC-CCCCceeEEEEcccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPS-VIACDMSNTP-LNSSSVDVAVFCLSL  199 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~-~~~~d~~~lp-~~~~sfD~Vi~~~~l  199 (223)
                      ....||+||||||..-.+..    .+|+++|+++               ..+. |++++.+++| ++++++|.|++.++|
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL  155 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL  155 (252)
T ss_pred             CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence            34668999999999777665    5899999997               3444 8899999998 899999999999999


Q ss_pred             cCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      --+ |+...|.++.|+|||||.+++
T Consensus       156 CSve~~~k~L~e~~rlLRpgG~iif  180 (252)
T KOG4300|consen  156 CSVEDPVKQLNEVRRLLRPGGRIIF  180 (252)
T ss_pred             eccCCHHHHHHHHHHhcCCCcEEEE
Confidence            866 999999999999999999985

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.49  E-value=4e-13  Score=111.32  Aligned_cols=92  Identities=27%  Similarity=0.495  Sum_probs=76.6

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      .++..+... ++.+|||||||+|.++..++      .+|+++|+++                .++.+..+|+..++++.+
T Consensus        42 ~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  120 (239)
T PRK00216         42 KTIKWLGVR-PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN  120 (239)
T ss_pred             HHHHHhCCC-CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence            344444433 56899999999999887764      5799999986                246778889988888888


Q ss_pred             ceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++..+++++ ++..++..+.++|+|||.+++
T Consensus       121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~  156 (239)
T PRK00216        121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVI  156 (239)
T ss_pred             CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEE
Confidence            99999999999998 899999999999999998874

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.49  E-value=3e-13  Score=110.90  Aligned_cols=91  Identities=29%  Similarity=0.420  Sum_probs=77.0

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeE
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      ++..+... ++.+|||+|||+|.++..++      .+++++|+++             .++.+..+|+...+++++.||+
T Consensus        31 ~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~  109 (223)
T TIGR01934        31 AVKLIGVF-KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDA  109 (223)
T ss_pred             HHHHhccC-CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEE
Confidence            34444333 67899999999999888776      2799999985             2467889999988888889999


Q ss_pred             EEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..+++|. ++..++.++.++|+|||.|++
T Consensus       110 i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  141 (223)
T TIGR01934       110 VTIAFGLRNVTDIQKALREMYRVLKPGGRLVI  141 (223)
T ss_pred             EEEeeeeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence            9999999998 889999999999999999874

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.48  E-value=1e-13  Score=126.75  Aligned_cols=94  Identities=18%  Similarity=0.273  Sum_probs=78.6

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCC--CCCCCCCce
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMS--NTPLNSSSV  190 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~--~lp~~~~sf  190 (223)
                      ...++..+... ++.+|||||||+|.++..|+   .+|+|+|+++             .++.++++|+.  .+|+++++|
T Consensus        26 ~~~il~~l~~~-~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f  104 (475)
T PLN02336         26 RPEILSLLPPY-EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV  104 (475)
T ss_pred             hhHHHhhcCcc-CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence            35566666544 56799999999999999887   5799999997             25678888985  467888999


Q ss_pred             eEEEEcccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++..+++|+.   ...++.++.|+|+|||+|++
T Consensus       105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~  140 (475)
T PLN02336        105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF  140 (475)
T ss_pred             EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            9999999999993   46899999999999999975

>TIGR00740 methyltransferase, putative

Probab=99.47  E-value=1.2e-13  Score=115.57  Aligned_cols=81  Identities=16%  Similarity=0.287  Sum_probs=69.1

Q ss_pred             CCCeEEEECCcchHHHHHhc-------CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      ++.+|||||||+|.++..++       .+|+|+|+|+                .++.++.+|+..++++  .+|+|++..
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~  130 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF  130 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence            66899999999999887664       3599999996                2467889999988875  489999999


Q ss_pred             cccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++||++   +..++.++.++|+|||.|+|
T Consensus       131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i  159 (239)
T TIGR00740       131 TLQFLPPEDRIALLTKIYEGLNPNGVLVL  159 (239)
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            999983   46899999999999999985

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.44  E-value=3.8e-13  Score=114.32  Aligned_cols=83  Identities=18%  Similarity=0.200  Sum_probs=68.6

Q ss_pred             CCCeEEEECCcchH----HHHHhc----------CceEEEecCC-------C----------------------------
Q 027441          141 PSLVIADFGCGDAR----LAKSVK----------NKVFSFDLVS-------N----------------------------  171 (223)
Q Consensus       141 ~~~~ILDiGcG~G~----~a~~la----------~~v~gvDis~-------~----------------------------  171 (223)
                      +..+|||+|||+|.    ++..++          .+|+|+|+|+       .                            
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    333332          2699999997       0                            


Q ss_pred             -------CCcEEEccCCCCCCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441          172 -------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       172 -------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                             ++.|.++|+...+++.+.||+|+|.++++|++.+   .++.+++++|+|||+|+|
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l  240 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL  240 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence                   4567888998888778899999999999999543   799999999999999986

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.44  E-value=5.7e-13  Score=107.69  Aligned_cols=79  Identities=16%  Similarity=0.152  Sum_probs=67.8

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||||||+|..+..++     .+|+++|+++               .++.+..+|+..++. +++||+|++...  
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~--  121 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV--  121 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence            47899999999999888775     5899999996               357889999988877 779999998652  


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       .+++.++.++.++|+|||.|++
T Consensus       122 -~~~~~~l~~~~~~LkpGG~lv~  143 (187)
T PRK00107        122 -ASLSDLVELCLPLLKPGGRFLA  143 (187)
T ss_pred             -cCHHHHHHHHHHhcCCCeEEEE
Confidence             3788999999999999999985

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.43  E-value=3.9e-13  Score=108.63  Aligned_cols=91  Identities=20%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVA  193 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~V  193 (223)
                      .+.+.+... +..++||||||.|..+.+|+   -.|+++|+|+              -.+...+.|+....++ ..||+|
T Consensus        21 ~v~~a~~~~-~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I   98 (192)
T PF03848_consen   21 EVLEAVPLL-KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFI   98 (192)
T ss_dssp             HHHHHCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEE
T ss_pred             HHHHHHhhc-CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEE
Confidence            344444444 67899999999999999999   3799999997              2466788999888875 679999


Q ss_pred             EEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..+++|+   ..+.++..+...++|||+++|
T Consensus        99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li  131 (192)
T PF03848_consen   99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLI  131 (192)
T ss_dssp             EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence            999999999   445899999999999999875

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK06202 hypothetical protein; Provisional

Probab=99.43  E-value=9.1e-13  Score=109.70  Aligned_cols=81  Identities=17%  Similarity=0.185  Sum_probs=66.0

Q ss_pred             CCCCeEEEECCcchHHHHHhc---------CceEEEecCC------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      .++.+|||||||+|.++..|+         .+|+|+|+++            .++.+.+.++..+++.+++||+|+++++
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            356899999999999877765         2799999997            2456677777778877889999999999


Q ss_pred             ccCC-C--HHHHHHHHHHccCCCCEE
Q 027441          199 LMGI-N--FPNYLQEAQRVLKPRGEE  221 (223)
Q Consensus       199 l~~~-d--~~~~l~e~~rvLkpgG~l  221 (223)
                      +||+ +  ...++.++.|+++ |+++
T Consensus       139 lhh~~d~~~~~~l~~~~r~~~-~~~~  163 (232)
T PRK06202        139 LHHLDDAEVVRLLADSAALAR-RLVL  163 (232)
T ss_pred             eecCChHHHHHHHHHHHHhcC-eeEE
Confidence            9999 4  3479999999998 4443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.43  E-value=4.2e-13  Score=119.70  Aligned_cols=88  Identities=23%  Similarity=0.353  Sum_probs=70.1

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCCC------------CCcEEEccCCCCCCCCCceeEEEE
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN------------DPSVIACDMSNTPLNSSSVDVAVF  195 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~------------~~~~~~~d~~~lp~~~~sfD~Vi~  195 (223)
                      +++.+.. .++.+|||||||+|.++..++    .+|+|+|+|+.            .+.+..+|...+   +++||+|++
T Consensus       159 l~~~l~l-~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs  234 (383)
T PRK11705        159 ICRKLQL-KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVS  234 (383)
T ss_pred             HHHHhCC-CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEE
Confidence            3344433 377899999999999998876    47999999971            345556666554   478999999


Q ss_pred             cccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+++|+   +++.++.++.++|+|||.+++
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl  265 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLL  265 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            9999998   457999999999999999975

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.42  E-value=3.2e-13  Score=110.38  Aligned_cols=83  Identities=16%  Similarity=0.207  Sum_probs=69.0

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccC-CCCC--CCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDM-SNTP--LNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~-~~lp--~~~~sfD~Vi~~~  197 (223)
                      +..+|||||||+|.++..++     .+|+|+|+++               .++.++.+|+ ..++  +++++||+|++.+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            46899999999999988876     3699999997               3577889998 7766  7788999999877


Q ss_pred             cccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...|.         ..+.++.++.++|+|||.|+|
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i  154 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF  154 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence            65432         257899999999999999975

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.40  E-value=1e-12  Score=105.64  Aligned_cols=79  Identities=15%  Similarity=0.126  Sum_probs=65.6

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||||||+|.++..++     .+|+|+|+++               .++.++.+|+..++ .+++||+|++.. + 
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-  118 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-  118 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence            47899999999999888765     4799999997               35778899998875 357899999865 2 


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       .+++.++..+.++|+|||.+++
T Consensus       119 -~~~~~~~~~~~~~LkpgG~lvi  140 (181)
T TIGR00138       119 -ASLNVLLELTLNLLKVGGYFLA  140 (181)
T ss_pred             -hCHHHHHHHHHHhcCCCCEEEE
Confidence             2667889999999999999975

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.40  E-value=1.6e-12  Score=107.48  Aligned_cols=107  Identities=13%  Similarity=0.128  Sum_probs=79.8

Q ss_pred             hHHhhhccCC-CchHHHHHHHHhc--cCCCCeEEEECCcchHHHHHhc---CceEEEecCCC------------------
Q 027441          116 GYQEQMSHWP-ELPVNIIVKWLKD--HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN------------------  171 (223)
Q Consensus       116 ~~~~~~~~~p-~~~~~~i~~~l~~--~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~------------------  171 (223)
                      .|......|. ..+...+.+++..  .+++.+|||+|||.|..+..|+   ..|+|+|+|+.                  
T Consensus         9 rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~   88 (218)
T PRK13255          9 KWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQS   88 (218)
T ss_pred             HHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCcccccc
Confidence            3333333453 4555566666542  2356899999999999999998   47999999961                  


Q ss_pred             ---------CCcEEEccCCCCCCCC-CceeEEEEcccccCCC---HHHHHHHHHHccCCCCEEE
Q 027441          172 ---------DPSVIACDMSNTPLNS-SSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       172 ---------~~~~~~~d~~~lp~~~-~sfD~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lv  222 (223)
                               ++.+.++|+..++..+ ..||.|+...+++|++   ...++..+.++|+|||+++
T Consensus        89 ~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255         89 GEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             ccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence                     2456788888875432 5899999999999994   4599999999999998643

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.39  E-value=9.3e-13  Score=105.87  Aligned_cols=82  Identities=16%  Similarity=0.218  Sum_probs=65.0

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-C
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-N  203 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d  203 (223)
                      .-.++||+|||.|.++..|+   .+++++|+|+             .++.+.++|+.... +++.||+|+++.+++|+ +
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~  121 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDD  121 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSS
T ss_pred             ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCC
Confidence            55889999999999999999   5799999997             67889999997754 67899999999999999 4


Q ss_pred             HH---HHHHHHHHccCCCCEEEc
Q 027441          204 FP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 ~~---~~l~e~~rvLkpgG~lvi  223 (223)
                      .+   .++..+...|.|||.|++
T Consensus       122 ~~~L~~~l~~l~~~L~pgG~LV~  144 (201)
T PF05401_consen  122 AEDLRAALDRLVAALAPGGHLVF  144 (201)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEE
Confidence            33   789999999999999985

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.39  E-value=6.4e-13  Score=106.52  Aligned_cols=84  Identities=26%  Similarity=0.483  Sum_probs=72.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------CCCcEEEccCCC-C-CCCCCceeEEEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------NDPSVIACDMSN-T-PLNSSSVDVAVF  195 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------~~~~~~~~d~~~-l-p~~~~sfD~Vi~  195 (223)
                      +.|.+++.   ++.+|||||||.|.+..+|.    ...+|+|+++        ..+.++++|+.. + .|++++||+||+
T Consensus         5 ~~I~~~I~---pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl   81 (193)
T PF07021_consen    5 QIIAEWIE---PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL   81 (193)
T ss_pred             HHHHHHcC---CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence            46677766   78999999999999999997    3678999998        467789999965 4 488999999999


Q ss_pred             cccccCC-CHHHHHHHHHHccC
Q 027441          196 CLSLMGI-NFPNYLQEAQRVLK  216 (223)
Q Consensus       196 ~~~l~~~-d~~~~l~e~~rvLk  216 (223)
                      +.+|.++ +|..+|.|+.|+-+
T Consensus        82 sqtLQ~~~~P~~vL~EmlRVgr  103 (193)
T PF07021_consen   82 SQTLQAVRRPDEVLEEMLRVGR  103 (193)
T ss_pred             HhHHHhHhHHHHHHHHHHHhcC
Confidence            9999999 88899999998865

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.39  E-value=1.9e-12  Score=96.41  Aligned_cols=89  Identities=17%  Similarity=0.210  Sum_probs=67.3

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCC-CCCCCCce
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSV  190 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~-lp~~~~sf  190 (223)
                      ++..+... ++.+|||+|||+|.++..++     .+|+++|+++               .++.++.+|+.. ++....+|
T Consensus        11 ~~~~~~~~-~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (124)
T TIGR02469        11 TLSKLRLR-PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP   89 (124)
T ss_pred             HHHHcCCC-CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence            44444322 56799999999999988886     3799999996               345666777654 33334689


Q ss_pred             eEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++....++  ...++.++.++|+|||.|++
T Consensus        90 D~v~~~~~~~~--~~~~l~~~~~~Lk~gG~li~  120 (124)
T TIGR02469        90 DRVFIGGSGGL--LQEILEAIWRRLRPGGRIVL  120 (124)
T ss_pred             CEEEECCcchh--HHHHHHHHHHHcCCCCEEEE
Confidence            99999776443  46899999999999999985

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.37  E-value=2.3e-12  Score=105.50  Aligned_cols=88  Identities=19%  Similarity=0.257  Sum_probs=68.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~  187 (223)
                      ..+++.+... ++.+|||||||+|..+..++      .+|+++|+++                .++.+..+|+...+...
T Consensus        62 ~~~~~~l~~~-~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~  140 (205)
T PRK13944         62 AMMCELIEPR-PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH  140 (205)
T ss_pred             HHHHHhcCCC-CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence            4455555433 67899999999999887765      4799999996                13677888987655456


Q ss_pred             CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+||+|++..+++++.     .++.++|+|||.|++
T Consensus       141 ~~fD~Ii~~~~~~~~~-----~~l~~~L~~gG~lvi  171 (205)
T PRK13944        141 APFDAIIVTAAASTIP-----SALVRQLKDGGVLVI  171 (205)
T ss_pred             CCccEEEEccCcchhh-----HHHHHhcCcCcEEEE
Confidence            7999999999887653     478899999999975

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.37  E-value=2.7e-12  Score=106.70  Aligned_cols=83  Identities=17%  Similarity=0.251  Sum_probs=69.0

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCCC--------------CCcEEEccCCCCC-CCCCceeEEEEcccccCC
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTP-LNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~--------------~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~~~  202 (223)
                      ++.+|||||||+|.++..+.   ..|+++|+++.              .+.+..+++..++ ..++.||+|++..+++|+
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~  127 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV  127 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence            67899999999999888776   57999999861              2455666666554 345789999999999999


Q ss_pred             -CHHHHHHHHHHccCCCCEEEc
Q 027441          203 -NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 -d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       ++..++..+.++|+|||.|++
T Consensus       128 ~~~~~~l~~~~~~L~~gG~l~v  149 (233)
T PRK05134        128 PDPASFVRACAKLVKPGGLVFF  149 (233)
T ss_pred             CCHHHHHHHHHHHcCCCcEEEE
Confidence             889999999999999999875

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.35  E-value=6.1e-12  Score=101.49  Aligned_cols=92  Identities=22%  Similarity=0.281  Sum_probs=69.4

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCCC----CCcEEEccCCCCC--------CCCCceeEE
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVSN----DPSVIACDMSNTP--------LNSSSVDVA  193 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~----~~~~~~~d~~~lp--------~~~~sfD~V  193 (223)
                      +.+.+....++.+|||+|||+|.++..++      .+|+++|+++.    ++.++.+|+.+.+        ++++.||+|
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V  102 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV  102 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence            34444444578999999999999888765      35999999983    6778888887643        456789999


Q ss_pred             EEccccc----C-CC-------HHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLM----G-IN-------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~----~-~d-------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..+.+    | ++       ...++..+.++|+|||.++|
T Consensus       103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi  144 (188)
T TIGR00438       103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV  144 (188)
T ss_pred             EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence            9865422    1 12       25899999999999999985

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.35  E-value=1.6e-12  Score=105.45  Aligned_cols=92  Identities=15%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAV  194 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi  194 (223)
                      ..++.++... +...|.|||||+|..+..|+     +.|+|+|-|+          .++.|..+|+..+. +...+|+++
T Consensus        20 ~dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllf   97 (257)
T COG4106          20 RDLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLF   97 (257)
T ss_pred             HHHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhh
Confidence            4566666655 66899999999999999887     5799999997          68889999998875 457799999


Q ss_pred             EcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++.+|+|+ |-..+|..+.-.|.|||.|.+
T Consensus        98 aNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV  127 (257)
T COG4106          98 ANAVLQWLPDHPELLPRLVSQLAPGGVLAV  127 (257)
T ss_pred             hhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence            99999999 999999999999999999864

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.34  E-value=3.8e-12  Score=103.23  Aligned_cols=86  Identities=22%  Similarity=0.390  Sum_probs=70.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------CCCcEEEccCCC-C-CCCCCceeEEEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------NDPSVIACDMSN-T-PLNSSSVDVAVF  195 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------~~~~~~~~d~~~-l-p~~~~sfD~Vi~  195 (223)
                      +.+.+.+.   ++.+|||||||+|.++..++    ..++|+|+++        .++.++.+|+.. + ++++++||+|++
T Consensus         5 ~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~   81 (194)
T TIGR02081         5 ESILNLIP---PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVIL   81 (194)
T ss_pred             HHHHHhcC---CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEE
Confidence            34455543   56799999999999988875    3578999996        356788889865 4 477889999999


Q ss_pred             cccccCC-CHHHHHHHHHHccCCC
Q 027441          196 CLSLMGI-NFPNYLQEAQRVLKPR  218 (223)
Q Consensus       196 ~~~l~~~-d~~~~l~e~~rvLkpg  218 (223)
                      ..++||+ ++..++.++.|+++++
T Consensus        82 ~~~l~~~~d~~~~l~e~~r~~~~~  105 (194)
T TIGR02081        82 SQTLQATRNPEEILDEMLRVGRHA  105 (194)
T ss_pred             hhHhHcCcCHHHHHHHHHHhCCeE
Confidence            9999999 9999999999988764

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.34  E-value=9.8e-12  Score=99.49  Aligned_cols=90  Identities=19%  Similarity=0.324  Sum_probs=69.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVA  193 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~V  193 (223)
                      .+...+... ++.+|||+|||+|.++..++   .+|+++|+++              .++.++.+|+...+  .++||+|
T Consensus        10 ~l~~~l~~~-~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~V   86 (179)
T TIGR00537        10 LLEANLREL-KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVI   86 (179)
T ss_pred             HHHHHHHhc-CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEE
Confidence            344555544 56789999999999998887   3699999997              23556777876644  4589999


Q ss_pred             EEcccccCCC----------------------HHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGIN----------------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~d----------------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++...+++.+                      ...++.++.++|+|||.+++
T Consensus        87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~  138 (179)
T TIGR00537        87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL  138 (179)
T ss_pred             EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence            9998876552                      34689999999999999875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.33  E-value=6.3e-12  Score=103.53  Aligned_cols=88  Identities=19%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..+++.+... ++.+|||||||+|+++..++      .+|+++|+++               .++.++.+|+...+...+
T Consensus        66 ~~~~~~l~~~-~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         66 AIMCELLDLK-EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHHHcCCC-CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence            4455555443 78999999999999987765      4899999996               367889999877666678


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .||+|++..+++++     ...+.+.|+|||.|++
T Consensus       145 ~fD~I~~~~~~~~~-----~~~l~~~LkpgG~lvi  174 (212)
T PRK13942        145 PYDRIYVTAAGPDI-----PKPLIEQLKDGGIMVI  174 (212)
T ss_pred             CcCEEEECCCcccc-----hHHHHHhhCCCcEEEE
Confidence            99999998876543     3467788999999875

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.33  E-value=5.1e-12  Score=104.26  Aligned_cols=90  Identities=18%  Similarity=0.221  Sum_probs=72.5

Q ss_pred             HHHHHHHhc-cCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKD-HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      ..+++++.. ..++.+|||||||+|.++..++   .+|+|+|+++                .++.+.++|+..++   ++
T Consensus        43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~  119 (219)
T TIGR02021        43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GE  119 (219)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CC
Confidence            455666653 3367899999999999999887   5799999997                15678888888776   78


Q ss_pred             eeEEEEcccccCCC---HHHHHHHHHHccCCCCEEE
Q 027441          190 VDVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       190 fD~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lv  222 (223)
                      ||+|++..+++|++   ...++.++.+++++++++.
T Consensus       120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021       120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT  155 (219)
T ss_pred             cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            99999999999873   4588999999999877664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.33  E-value=1.2e-11  Score=105.92  Aligned_cols=82  Identities=16%  Similarity=0.216  Sum_probs=67.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-------CceEEEecCC-----------------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS-----------------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~-----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      +..+|||||||+|.++..+.       .+++++|+++                 .++.|..+|+.+.+-..+.||+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            66899999999886544322       4699999996                 35889999998764335789999999


Q ss_pred             ccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       +++++   ++..++..+.++|+|||.|++
T Consensus       203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl  231 (296)
T PLN03075        203 -ALVGMDKEEKVKVIEHLGKHMAPGALLML  231 (296)
T ss_pred             -cccccccccHHHHHHHHHHhcCCCcEEEE
Confidence             88877   778999999999999999985

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.29  E-value=1.1e-11  Score=98.57  Aligned_cols=92  Identities=21%  Similarity=0.397  Sum_probs=70.9

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      ..+++++... +..+|||+|||+|.++..++     .+|+++|+++               .++.++.+|+.... ++..
T Consensus        21 ~lL~~~l~~~-~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~~~~   98 (170)
T PF05175_consen   21 RLLLDNLPKH-KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-PDGK   98 (170)
T ss_dssp             HHHHHHHHHH-TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-CTTC
T ss_pred             HHHHHHHhhc-cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-cccc
Confidence            4567777765 77899999999999999887     2599999997               23667788875532 3789


Q ss_pred             eeEEEEcccccCC-C-----HHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI-N-----FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d-----~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++.--++.- +     ...++.++.++|+|||.|++
T Consensus        99 fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   99 FDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             EEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence            9999999877644 2     35899999999999999864

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.29  E-value=1.5e-11  Score=101.38  Aligned_cols=88  Identities=17%  Similarity=0.155  Sum_probs=68.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---C---ceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---N---KVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~---~v~gvDis~---------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..+++.+... ++.+|||||||+|.++..++   .   +|+++|+++               .++.++.+|+........
T Consensus        67 ~~~~~~l~~~-~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        67 AMMTELLELK-PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHHhCCC-CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            4555665544 77899999999999998876   2   399999996               357788889876554557


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .||+|++.....++     ...+.+.|+|||+|++
T Consensus       146 ~fD~Ii~~~~~~~~-----~~~~~~~L~~gG~lv~  175 (215)
T TIGR00080       146 PYDRIYVTAAGPKI-----PEALIDQLKEGGILVM  175 (215)
T ss_pred             CCCEEEEcCCcccc-----cHHHHHhcCcCcEEEE
Confidence            89999988775543     4567889999999875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.29  E-value=5.6e-12  Score=102.37  Aligned_cols=83  Identities=17%  Similarity=0.303  Sum_probs=67.2

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCC---CCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP---LNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~  197 (223)
                      ...+|||||||+|.++..++     ..|+|+|++.               .++.++.+|+..++   +++++||.|++.+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            45689999999999998887     4799999997               36788899987653   4567999999887


Q ss_pred             cccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...|.         ..+.++.++.++|+|||.|++
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~  130 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF  130 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence            65443         125799999999999999975

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.28  E-value=1.6e-11  Score=101.25  Aligned_cols=83  Identities=19%  Similarity=0.281  Sum_probs=70.0

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC--------------C-CCcEEEccCCCCCCC-CCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------N-DPSVIACDMSNTPLN-SSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~-~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l~~  201 (223)
                      .+.+|||+|||+|.++..++   ..++++|+++              . ++.+..+|+..++.. .++||+|++..+++|
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~  124 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH  124 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence            47899999999999888775   5799999986              1 356677777766654 378999999999999


Q ss_pred             C-CHHHHHHHHHHccCCCCEEEc
Q 027441          202 I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      + ++..++.++.++|+|||.+++
T Consensus       125 ~~~~~~~l~~~~~~L~~gG~l~i  147 (224)
T TIGR01983       125 VPDPQAFIRACAQLLKPGGILFF  147 (224)
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEE
Confidence            9 899999999999999999874

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.25  E-value=1.9e-12  Score=105.82  Aligned_cols=83  Identities=18%  Similarity=0.284  Sum_probs=67.6

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCCCCC----------cEEEccCCCC-C-CCCCceeEEEEcccccCC-CH
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSNDP----------SVIACDMSNT-P-LNSSSVDVAVFCLSLMGI-NF  204 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~~~----------~~~~~d~~~l-p-~~~~sfD~Vi~~~~l~~~-d~  204 (223)
                      +..++||+|||||..+..|.   .+++|||||...+          ...++++..+ + .....||+|++..|+.++ +.
T Consensus       125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L  204 (287)
T COG4976         125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL  204 (287)
T ss_pred             ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch
Confidence            46899999999999888776   6899999997222          2334454432 2 456889999999999999 99


Q ss_pred             HHHHHHHHHccCCCCEEEc
Q 027441          205 PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       205 ~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.++..+...|.|||.|.|
T Consensus       205 e~~~~~aa~~L~~gGlfaF  223 (287)
T COG4976         205 EGLFAGAAGLLAPGGLFAF  223 (287)
T ss_pred             hhHHHHHHHhcCCCceEEE
Confidence            9999999999999999975

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.25  E-value=2.8e-11  Score=104.83  Aligned_cols=91  Identities=18%  Similarity=0.210  Sum_probs=70.8

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      +.+.+.+.. .+..+|||||||+|.++..++     .+++++|+..               .++.++.+|+...+++.  
T Consensus       139 ~~l~~~~~~-~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--  215 (306)
T TIGR02716       139 QLLLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--  215 (306)
T ss_pred             HHHHHHcCC-CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--
Confidence            334444432 366899999999999998886     3688999743               34678899987766653  


Q ss_pred             eeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+|+++.++|+.+.   ..+|.+++++|+|||.|+|
T Consensus       216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i  252 (306)
T TIGR02716       216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLI  252 (306)
T ss_pred             CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEE
Confidence            699999999998843   4799999999999999975

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.23  E-value=5.4e-11  Score=95.86  Aligned_cols=87  Identities=16%  Similarity=0.178  Sum_probs=65.6

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCcee
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      ++..+... ++.+|||||||+|.++..++     .+|+++|+++               .++.++.+|+. .++ ...||
T Consensus        23 ~~~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D   99 (187)
T PRK08287         23 ALSKLELH-RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKAD   99 (187)
T ss_pred             HHHhcCCC-CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCC
Confidence            33444333 67899999999999988775     4799999997               24556666763 233 35799


Q ss_pred             EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++....+  ....++..+.++|+|||.|++
T Consensus       100 ~v~~~~~~~--~~~~~l~~~~~~Lk~gG~lv~  129 (187)
T PRK08287        100 AIFIGGSGG--NLTAIIDWSLAHLHPGGRLVL  129 (187)
T ss_pred             EEEECCCcc--CHHHHHHHHHHhcCCCeEEEE
Confidence            999876643  356789999999999999975

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.23  E-value=4.6e-11  Score=106.06  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=69.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCCC------------------CCcEEEccCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------------DPSVIACDMSNTPLN  186 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~------------------~~~~~~~d~~~lp~~  186 (223)
                      ..+++++... ...+|||||||+|.++..++     .+|+++|+|+.                  ++.+...|+... ++
T Consensus       218 rllL~~lp~~-~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~  295 (378)
T PRK15001        218 RFFMQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE  295 (378)
T ss_pred             HHHHHhCCcc-cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence            4566666543 34699999999999998886     47999999960                  235666666332 34


Q ss_pred             CCceeEEEEcccccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCLSLMGI------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+||+|+|.-.+|..      ....+|.++.++|+|||.|+|
T Consensus       296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~i  338 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI  338 (378)
T ss_pred             CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEE
Confidence            5689999998777643      134889999999999999985

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.23  E-value=4.5e-11  Score=105.10  Aligned_cols=91  Identities=19%  Similarity=0.255  Sum_probs=69.7

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCCCCCCce
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      ..+++.+... ...+|||+|||+|.++..++     .+|+++|+++              ....++.+|+...  .++.|
T Consensus       186 ~lLl~~l~~~-~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~f  262 (342)
T PRK09489        186 QLLLSTLTPH-TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRF  262 (342)
T ss_pred             HHHHHhcccc-CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCc
Confidence            4556666543 45689999999999998876     3799999996              1234566666442  25789


Q ss_pred             eEEEEcccccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGI------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++...+|+.      ....++.++.++|+|||.|+|
T Consensus       263 DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence            999999998863      346999999999999999975

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.23  E-value=4.3e-11  Score=106.16  Aligned_cols=92  Identities=20%  Similarity=0.298  Sum_probs=72.2

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCC--CCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~l--p~~~~  188 (223)
                      .+++.+... .+..+||||||+|.++..++     ..++|+|+++               .++.++.+|+..+  +++++
T Consensus       113 ~~~~~~~~~-~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        113 NFLDFISKN-QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHHhcCC-CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence            444555443 45789999999999999888     4799999995               4778889998654  57789


Q ss_pred             ceeEEEEcccccCC-C------HHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI-N------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~-d------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++|.|++.+..-|. .      .+.++.++.|+|+|||.+.|
T Consensus       192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence            99999987654443 1      15899999999999999875

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.22  E-value=5.3e-11  Score=98.42  Aligned_cols=89  Identities=19%  Similarity=0.242  Sum_probs=66.8

Q ss_pred             HHHHHHHhc--cCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKD--HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~--~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      +.++.++..  ..++.+|||||||+|.++..++   ..|+|+|+++                .++.+..+|+   +..++
T Consensus        50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~  126 (230)
T PRK07580         50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLG  126 (230)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccC
Confidence            455666654  3367899999999999998887   4799999986                1456777773   34468


Q ss_pred             ceeEEEEcccccCC---CHHHHHHHHHHccCCCCEE
Q 027441          189 SVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEE  221 (223)
Q Consensus       189 sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~l  221 (223)
                      +||+|++..+++|+   +...++..+.+.+++++++
T Consensus       127 ~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i  162 (230)
T PRK07580        127 RFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF  162 (230)
T ss_pred             CcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence            89999999999887   3347888888877655544

>PRK04266 fibrillarin; Provisional

Probab=99.21  E-value=6.8e-11  Score=98.30  Aligned_cols=82  Identities=15%  Similarity=0.142  Sum_probs=62.1

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCC----CCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNT----PLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~l----p~~~~sfD~Vi~~~  197 (223)
                      .++.+|||+|||+|.++..++     ..|+|+|+++             .++.++.+|+...    ++. .+||+|++..
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~  149 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDV  149 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence            377899999999999988887     3799999997             3677888888652    233 5699998643


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...+ ....++.++.++|||||.|+|
T Consensus       150 ~~p~-~~~~~L~~~~r~LKpGG~lvI  174 (226)
T PRK04266        150 AQPN-QAEIAIDNAEFFLKDGGYLLL  174 (226)
T ss_pred             CChh-HHHHHHHHHHHhcCCCcEEEE
Confidence            3100 113568999999999999986

>PRK14967 putative methyltransferase; Provisional

Probab=99.20  E-value=1.3e-10  Score=96.35  Aligned_cols=98  Identities=19%  Similarity=0.244  Sum_probs=68.8

Q ss_pred             CCchHHHHHHHHhc--cCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCC
Q 027441          125 PELPVNIIVKWLKD--HSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTP  184 (223)
Q Consensus       125 p~~~~~~i~~~l~~--~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp  184 (223)
                      |......+...+..  ..++.+|||+|||+|.++..++    .+|+++|+++              .++.++.+|+... 
T Consensus        18 p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-   96 (223)
T PRK14967         18 PQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-   96 (223)
T ss_pred             CCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-
Confidence            33333344444432  2356899999999999988776    3799999997              1345667777553 


Q ss_pred             CCCCceeEEEEcccccCC-C---------------------HHHHHHHHHHccCCCCEEEc
Q 027441          185 LNSSSVDVAVFCLSLMGI-N---------------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 ~~~~sfD~Vi~~~~l~~~-d---------------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++++||+|++...+... .                     ...++.++.++|+|||.|++
T Consensus        97 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967         97 VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            456789999997533321 1                     34688899999999999975

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.20  E-value=7.9e-11  Score=96.70  Aligned_cols=87  Identities=18%  Similarity=0.142  Sum_probs=65.4

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      .++..+... ++.+|||||||+|.++..++   .+|+++|+++               .++.+..+|........+.||+
T Consensus        69 ~l~~~l~~~-~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  147 (212)
T PRK00312         69 RMTELLELK-PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDR  147 (212)
T ss_pred             HHHHhcCCC-CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCE
Confidence            344444433 67899999999999887665   5799999986               2467788887553333578999


Q ss_pred             EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++...++++     ...+.+.|+|||.|++
T Consensus       148 I~~~~~~~~~-----~~~l~~~L~~gG~lv~  173 (212)
T PRK00312        148 ILVTAAAPEI-----PRALLEQLKEGGILVA  173 (212)
T ss_pred             EEEccCchhh-----hHHHHHhcCCCcEEEE
Confidence            9998876554     4567899999999875

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.18  E-value=6.1e-11  Score=96.51  Aligned_cols=83  Identities=18%  Similarity=0.340  Sum_probs=68.7

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCCC----------CCcEEEccC-CCCCCCCCceeEEEEcccccCC---C
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN----------DPSVIACDM-SNTPLNSSSVDVAVFCLSLMGI---N  203 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~----------~~~~~~~d~-~~lp~~~~sfD~Vi~~~~l~~~---d  203 (223)
                      ...-|||||||+|..+..|.   ..++|+|||+.          .-+++.+|+ +.+||.+++||.||+..++.|+   |
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~  129 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNAD  129 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccC
Confidence            35789999999999998887   36789999982          235778888 5699999999999999998876   2


Q ss_pred             -----H----HHHHHHHHHccCCCCEEEc
Q 027441          204 -----F----PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 -----~----~~~l~e~~rvLkpgG~lvi  223 (223)
                           +    -.|+..++.+|++|+..++
T Consensus       130 ~s~~~P~~Rl~~FF~tLy~~l~rg~raV~  158 (270)
T KOG1541|consen  130 KSLHVPKKRLLRFFGTLYSCLKRGARAVL  158 (270)
T ss_pred             ccccChHHHHHHHhhhhhhhhccCceeEE
Confidence                 1    1788999999999998764

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.17  E-value=2.4e-10  Score=94.79  Aligned_cols=108  Identities=19%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             hHHhhhccCC-CchHHHHHHHHhcc--CCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------------
Q 027441          116 GYQEQMSHWP-ELPVNIIVKWLKDH--SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------------  170 (223)
Q Consensus       116 ~~~~~~~~~p-~~~~~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------------  170 (223)
                      .|......|. ..+-..+.+++...  .++.+||+.|||.|.-+.+|+   -.|+|+|+|+                   
T Consensus        15 rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~   94 (226)
T PRK13256         15 RWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHG   94 (226)
T ss_pred             HHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecc
Confidence            3444344552 23334444555433  245899999999999999998   4799999996                   


Q ss_pred             --------CCCcEEEccCCCCCCC---CCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          171 --------NDPSVIACDMSNTPLN---SSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 --------~~~~~~~~d~~~lp~~---~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                              ..+.+.++|+..++..   .+.||+|+-..+|+++++   ..++..+.++|+|||.+++
T Consensus        95 ~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~lll  161 (226)
T PRK13256         95 NDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILL  161 (226)
T ss_pred             cccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                    1567889999988642   268999999999999944   4999999999999999874

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.17  E-value=9.9e-11  Score=95.27  Aligned_cols=81  Identities=17%  Similarity=0.250  Sum_probs=63.3

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-CCCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-PLNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~  197 (223)
                      ++.+|||+|||+|.++..++      .+|+++|+++                .++.++.+|+... +.....||+|++..
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~  119 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG  119 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence            77899999999999887653      4799999996                2456777777653 33346899999854


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .  ..++..++.++.++|+|||.|++
T Consensus       120 ~--~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        120 G--SEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             C--cccHHHHHHHHHHHcCCCcEEEE
Confidence            2  22678999999999999999875

>PTZ00146 fibrillarin; Provisional

Probab=99.16  E-value=2.2e-10  Score=98.04  Aligned_cols=82  Identities=18%  Similarity=0.131  Sum_probs=64.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCC---CCCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSN---TPLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~---lp~~~~sfD~Vi~~~  197 (223)
                      .++.+|||+|||+|.++..++      ..|+++|+++             .++.++.+|+..   +++...+||+|++..
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv  210 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV  210 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence            377899999999999998887      3699999985             467788888754   222345799999887


Q ss_pred             cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +  .. +...++.++.++|||||.|+|
T Consensus       211 a--~pdq~~il~~na~r~LKpGG~~vI  235 (293)
T PTZ00146        211 A--QPDQARIVALNAQYFLKNGGHFII  235 (293)
T ss_pred             C--CcchHHHHHHHHHHhccCCCEEEE
Confidence            5  23 334667799999999999986

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.15  E-value=1.2e-10  Score=100.29  Aligned_cols=79  Identities=20%  Similarity=0.217  Sum_probs=59.2

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCCC----------------CCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN----------------DPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~----------------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||+|||+|.++..++    .+|+|+|+++.                .+.+...+.  .++.++.||+|++....+
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~~  236 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANILAE  236 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecCHH
Confidence            56899999999999887765    47999999971                122333332  233467899999876533


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                        ....++.++.++|+|||+|++
T Consensus       237 --~l~~ll~~~~~~LkpgG~li~  257 (288)
T TIGR00406       237 --VIKELYPQFSRLVKPGGWLIL  257 (288)
T ss_pred             --HHHHHHHHHHHHcCCCcEEEE
Confidence              235789999999999999985

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14968 putative methyltransferase; Provisional

Probab=99.14  E-value=2.7e-10  Score=91.05  Aligned_cols=91  Identities=23%  Similarity=0.373  Sum_probs=67.4

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CC--CcEEEccCCCCCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------ND--PSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~--~~~~~~d~~~lp~~~~sf  190 (223)
                      .+.+.+... ++.+|||+|||+|.++..++   .+|+++|+++               .+  +.++.+|+.. ++.+..|
T Consensus        14 ~l~~~~~~~-~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~   91 (188)
T PRK14968         14 LLAENAVDK-KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKF   91 (188)
T ss_pred             HHHHhhhcc-CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCc
Confidence            344555443 67899999999999988887   6899999997               11  5667777755 3445589


Q ss_pred             eEEEEcccccCC----------------------CHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGI----------------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~----------------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++...+.+.                      ....++.++.++|+|||.+++
T Consensus        92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~  146 (188)
T PRK14968         92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL  146 (188)
T ss_pred             eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence            999987554321                      134689999999999998864

>TIGR03438 probable methyltransferase

Probab=99.14  E-value=5.3e-10  Score=96.78  Aligned_cols=83  Identities=14%  Similarity=0.209  Sum_probs=61.2

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC--------------CC--CcEEEccCCC-CCCCCC----ceeEE
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------ND--PSVIACDMSN-TPLNSS----SVDVA  193 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------~~--~~~~~~d~~~-lp~~~~----sfD~V  193 (223)
                      ++.+|||+|||+|..+..|.      .+|+++|+|+              +.  +.++++|+.+ +++...    ...++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            56789999999999877665      3699999997              12  3456889876 444332    23344


Q ss_pred             EEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..+++++++   ..+|.+++++|+|||.|+|
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            45566777754   4789999999999999985

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.13  E-value=2.1e-10  Score=80.99  Aligned_cols=80  Identities=29%  Similarity=0.505  Sum_probs=66.5

Q ss_pred             eEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCC-CCCceeEEEEcccccC-C
Q 027441          144 VIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG-I  202 (223)
Q Consensus       144 ~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~l~~-~  202 (223)
                      +|||+|||+|..+..+.    .+++++|+++               ..+.++..|+...+. ....||+|++..++++ .
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~   80 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV   80 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence            48999999999888776    4799999986               245667778776653 5678999999999998 5


Q ss_pred             -CHHHHHHHHHHccCCCCEEEc
Q 027441          203 -NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 -d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       ....++..+.++|+|||.+++
T Consensus        81 ~~~~~~l~~~~~~l~~~g~~~~  102 (107)
T cd02440          81 EDLARFLEEARRLLKPGGVLVL  102 (107)
T ss_pred             hHHHHHHHHHHHHcCCCCEEEE
Confidence             778999999999999999975

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.13  E-value=3.3e-11  Score=89.26  Aligned_cols=82  Identities=24%  Similarity=0.347  Sum_probs=65.4

Q ss_pred             CCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCC--CCCCceeEEEEcccc
Q 027441          142 SLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSL  199 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~l  199 (223)
                      +.+|||+|||+|.++..++    .+++|+|+++                .++.++++|+..++  +.+.+||+|+++--+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            3589999999999887775    5899999997                35788999997765  778999999998777


Q ss_pred             cCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...         ....++.++.++|+|||.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            632         135889999999999999875

...

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.11  E-value=4.1e-10  Score=98.61  Aligned_cols=85  Identities=25%  Similarity=0.219  Sum_probs=68.3

Q ss_pred             cCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          139 HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ..++..|||+|||+|.++..++   ..|+|+|+++               .++.+..+|+.++|+.+++||+|++..-+.
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg  259 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG  259 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence            3477899999999999877654   6899999997               235788999999998888999999963221


Q ss_pred             -------C-C-C-HHHHHHHHHHccCCCCEEEc
Q 027441          201 -------G-I-N-FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 -------~-~-d-~~~~l~e~~rvLkpgG~lvi  223 (223)
                             + . + ...++.++.++|+|||++++
T Consensus       260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~  292 (329)
T TIGR01177       260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY  292 (329)
T ss_pred             CcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence                   1 1 1 46899999999999999874

This family is found exclusively in the Archaea.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.08  E-value=2.7e-10  Score=90.26  Aligned_cols=82  Identities=22%  Similarity=0.309  Sum_probs=68.3

Q ss_pred             CCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ..+|||+|||.|.+...|+     ..++|+|.|+                ..+.|.+.|+....+..+.||+|+--..+.
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D  147 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD  147 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence            3499999999999999988     4589999997                238899999998888889999998766655


Q ss_pred             CC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          201 GI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+         -+..++..+.++|+|||+|+|
T Consensus       148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvI  179 (227)
T KOG1271|consen  148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVI  179 (227)
T ss_pred             eeecCCCCcccceeeehhhHhhccCCCcEEEE
Confidence            43         123788899999999999987

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.08  E-value=8.3e-10  Score=92.36  Aligned_cols=82  Identities=22%  Similarity=0.386  Sum_probs=63.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ...+|||+|||+|.++..++     ..|+|+|+++               .++.++.+|+.. ++++++||+|++.-.+.
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~  165 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI  165 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence            34689999999999988887     3799999997               246788888865 45678999999854322


Q ss_pred             C------C---------------------CHHHHHHHHHHccCCCCEEEc
Q 027441          201 G------I---------------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~------~---------------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .      +                     ....++.++.++|+|||.+++
T Consensus       166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~  215 (251)
T TIGR03534       166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL  215 (251)
T ss_pred             chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence            1      1                     123678999999999999985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.07  E-value=6.1e-10  Score=90.40  Aligned_cols=89  Identities=19%  Similarity=0.260  Sum_probs=63.6

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCC-CCCCCCc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSS  189 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~-lp~~~~s  189 (223)
                      .++..+.. .++.+|||+|||+|.++..++     .+|+++|+++               .++.++.+|+.. ++.....
T Consensus        31 ~l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (196)
T PRK07402         31 LLISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA  109 (196)
T ss_pred             HHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence            34555543 367899999999999988775     4799999996               246677777754 2222233


Q ss_pred             eeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|.|+...   ..++..++.++.++|+|||.|++
T Consensus       110 ~d~v~~~~---~~~~~~~l~~~~~~LkpgG~li~  140 (196)
T PRK07402        110 PDRVCIEG---GRPIKEILQAVWQYLKPGGRLVA  140 (196)
T ss_pred             CCEEEEEC---CcCHHHHHHHHHHhcCCCeEEEE
Confidence            56665432   12678999999999999999875

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.07  E-value=6e-10  Score=96.89  Aligned_cols=89  Identities=19%  Similarity=0.268  Sum_probs=63.7

Q ss_pred             HHHHHHHhcc--CCCCeEEEECCcchHHHHHhc---CceEEEecCCC--------------------CCcEEEccCCCCC
Q 027441          130 NIIVKWLKDH--SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------------DPSVIACDMSNTP  184 (223)
Q Consensus       130 ~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~--------------------~~~~~~~d~~~lp  184 (223)
                      +.+++++...  .++.+|||||||+|.++..++   .+|+|+|+|+.                    ++.|..+|+..+ 
T Consensus       131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-  209 (315)
T PLN02585        131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-  209 (315)
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-
Confidence            4556666542  256799999999999998887   47999999971                    234556666543 


Q ss_pred             CCCCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEE
Q 027441          185 LNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       185 ~~~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lv  222 (223)
                        +++||+|+|..+++|+..   ..++..+.+ +.+||+++
T Consensus       210 --~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        210 --SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             --CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence              578999999999998832   245666654 45666654

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.06  E-value=2.2e-10  Score=90.26  Aligned_cols=52  Identities=23%  Similarity=0.294  Sum_probs=49.1

Q ss_pred             CCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          172 DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       172 ~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++.++++|+.++|+++++||+|++.++++|+ |+..++.+++|+|||||.|+|
T Consensus        27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i   79 (160)
T PLN02232         27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI   79 (160)
T ss_pred             ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence            5789999999999999999999999999998 999999999999999999975

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.05  E-value=1.2e-09  Score=93.73  Aligned_cols=80  Identities=23%  Similarity=0.299  Sum_probs=61.3

Q ss_pred             CeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcc----
Q 027441          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL----  197 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~----  197 (223)
                      .+|||+|||+|.++..++     .+|+|+|+|+                .++.++.+|+.. +++...||+|++.-    
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~  194 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID  194 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence            689999999999988887     3799999997                136788888765 34445899999851    


Q ss_pred             ---------cccCC-------------CHHHHHHHHHHccCCCCEEEc
Q 027441          198 ---------SLMGI-------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ---------~l~~~-------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                               ++.|-             ....++..+.++|+|||+|++
T Consensus       195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence                     22221             134788999999999999975

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.05  E-value=2.3e-10  Score=93.75  Aligned_cols=82  Identities=22%  Similarity=0.300  Sum_probs=71.6

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC-----------C--CCcEEEccCCCCCCCCCceeEEEEcccccCC-
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------N--DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------~--~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-  202 (223)
                      ....++|||||-|.++..|.    .+++-+|.|.           +  .....++|-+.++|.+++||+|+++.++||+ 
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N  151 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN  151 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence            34679999999999999887    4678888885           1  2245688999999999999999999999999 


Q ss_pred             CHHHHHHHHHHccCCCCEEE
Q 027441          203 NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       203 d~~~~l~e~~rvLkpgG~lv  222 (223)
                      |.|..+..+.-.|||+|.|+
T Consensus       152 dLPg~m~~ck~~lKPDg~Fi  171 (325)
T KOG2940|consen  152 DLPGSMIQCKLALKPDGLFI  171 (325)
T ss_pred             cCchHHHHHHHhcCCCccch
Confidence            99999999999999999886

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.05  E-value=5e-10  Score=93.64  Aligned_cols=93  Identities=19%  Similarity=0.293  Sum_probs=72.3

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCC--CCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTP--LNS  187 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp--~~~  187 (223)
                      .++..........+|||+|||+|.++..++     .+++|||+.+                .++.++.+|+.++.  ...
T Consensus        34 iLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~  113 (248)
T COG4123          34 ILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF  113 (248)
T ss_pred             HHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence            344444434357999999999999999998     4689999996                57889999997754  344


Q ss_pred             CceeEEEEcccc----------------cCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSL----------------MGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l----------------~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+||+|+|.=-+                +|.   +.+.++..+.++|||||.|.+
T Consensus       114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence            579999987433                222   577999999999999999874

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=6e-10  Score=90.68  Aligned_cols=90  Identities=19%  Similarity=0.209  Sum_probs=71.5

Q ss_pred             hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      .+..+++.|... ++.+|||||||+|+.+..|+   .+|+++|..+               .++.+.++|...-.-+.+.
T Consensus        60 ~vA~m~~~L~~~-~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP  138 (209)
T COG2518          60 MVARMLQLLELK-PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP  138 (209)
T ss_pred             HHHHHHHHhCCC-CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence            455677777665 88999999999999888887   7899999986               4788889998765446689


Q ss_pred             eeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||.|+...+...+     -..+.+-|+|||.|++
T Consensus       139 yD~I~Vtaaa~~v-----P~~Ll~QL~~gGrlv~  167 (209)
T COG2518         139 YDRIIVTAAAPEV-----PEALLDQLKPGGRLVI  167 (209)
T ss_pred             cCEEEEeeccCCC-----CHHHHHhcccCCEEEE
Confidence            9999988886443     2335667999999985

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=99.04  E-value=9.5e-11  Score=105.55  Aligned_cols=82  Identities=23%  Similarity=0.290  Sum_probs=62.7

Q ss_pred             CCeEEEECCcchHHHHHhc-CceEEEecCCC-----CCcEE----------EccCCCCCCCCCceeEEEEcccccCC--C
Q 027441          142 SLVIADFGCGDARLAKSVK-NKVFSFDLVSN-----DPSVI----------ACDMSNTPLNSSSVDVAVFCLSLMGI--N  203 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la-~~v~gvDis~~-----~~~~~----------~~d~~~lp~~~~sfD~Vi~~~~l~~~--d  203 (223)
                      -..+||+|||+|.++.+|. ..|+.+-+.+.     .+.|.          +.-...+||++++||+|+|+..+...  +
T Consensus       118 iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~  197 (506)
T PF03141_consen  118 IRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPN  197 (506)
T ss_pred             eEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhc
Confidence            3689999999999999988 45666655542     22221          12236799999999999999988733  3


Q ss_pred             HHHHHHHHHHccCCCCEEEc
Q 027441          204 FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -..+|-|+.|+|+|||+|++
T Consensus       198 ~g~~l~evdRvLRpGGyfv~  217 (506)
T PF03141_consen  198 DGFLLFEVDRVLRPGGYFVL  217 (506)
T ss_pred             ccceeehhhhhhccCceEEe
Confidence            35899999999999999974

; GO: 0008168 methyltransferase activity

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.04  E-value=4.9e-10  Score=94.45  Aligned_cols=81  Identities=23%  Similarity=0.311  Sum_probs=56.3

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCCCCCcEEEc--------cCCCCCCCCCceeEEEEcccccCCCHHHHH
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSVIAC--------DMSNTPLNSSSVDVAVFCLSLMGINFPNYL  208 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~~~~~~~--------d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l  208 (223)
                      ++.+|||+|||+|.++..++    .+|+|+|+++..+.....        +...++..+.+||+|++....+  ....++
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~--~~~~l~  196 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILAN--PLLELA  196 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHH--HHHHHH
Confidence            67899999999999888765    359999999832211100        1111222233799999875432  235788


Q ss_pred             HHHHHccCCCCEEEc
Q 027441          209 QEAQRVLKPRGEEQI  223 (223)
Q Consensus       209 ~e~~rvLkpgG~lvi  223 (223)
                      .++.++|+|||.|++
T Consensus       197 ~~~~~~LkpgG~lil  211 (250)
T PRK00517        197 PDLARLLKPGGRLIL  211 (250)
T ss_pred             HHHHHhcCCCcEEEE
Confidence            999999999999985

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.03  E-value=2e-10  Score=94.34  Aligned_cols=89  Identities=19%  Similarity=0.205  Sum_probs=64.6

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNS  187 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~  187 (223)
                      +..+++++... ++.+|||||||+|+.+..|+      ..|+++|+.+               .++.++.+|.....-..
T Consensus        61 ~a~~l~~L~l~-pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   61 VARMLEALDLK-PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHHHHTTC--TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred             HHHHHHHHhcC-CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence            34667777644 88999999999999988887      2588999987               47788999976543346


Q ss_pred             CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.||.|++..+...+     -..+.+.|++||+|++
T Consensus       140 apfD~I~v~~a~~~i-----p~~l~~qL~~gGrLV~  170 (209)
T PF01135_consen  140 APFDRIIVTAAVPEI-----PEALLEQLKPGGRLVA  170 (209)
T ss_dssp             -SEEEEEESSBBSS-------HHHHHTEEEEEEEEE
T ss_pred             CCcCEEEEeeccchH-----HHHHHHhcCCCcEEEE
Confidence            789999999887533     2347778999999985

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.03  E-value=1.1e-09  Score=95.42  Aligned_cols=86  Identities=14%  Similarity=0.151  Sum_probs=64.5

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCce
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      +++.+.. .++.+|||||||+|.++..++      ..|+++|+++               .++.++.+|+...+.....|
T Consensus        72 ll~~L~i-~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~f  150 (322)
T PRK13943         72 FMEWVGL-DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPY  150 (322)
T ss_pred             HHHhcCC-CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCc
Confidence            3444433 367899999999999988876      2599999997               24677888887665555789


Q ss_pred             eEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++...+.+     ....+.++|+|||.+++
T Consensus       151 D~Ii~~~g~~~-----ip~~~~~~LkpgG~Lvv  178 (322)
T PRK13943        151 DVIFVTVGVDE-----VPETWFTQLKEGGRVIV  178 (322)
T ss_pred             cEEEECCchHH-----hHHHHHHhcCCCCEEEE
Confidence            99999876543     33457789999999874

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.03  E-value=1.7e-09  Score=86.38  Aligned_cols=89  Identities=19%  Similarity=0.233  Sum_probs=71.0

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      ..+..|... ++..++|||||+|..+..++     .+|+++|-++               .++.++.+++...-....+|
T Consensus        25 l~ls~L~~~-~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~  103 (187)
T COG2242          25 LTLSKLRPR-PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP  103 (187)
T ss_pred             HHHHhhCCC-CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence            344555555 78999999999999988877     5899999876               57788888885532122279


Q ss_pred             eEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |.|+....   .+.+.+|+.+...|+|||.|++
T Consensus       104 daiFIGGg---~~i~~ile~~~~~l~~ggrlV~  133 (187)
T COG2242         104 DAIFIGGG---GNIEEILEAAWERLKPGGRLVA  133 (187)
T ss_pred             CEEEECCC---CCHHHHHHHHHHHcCcCCeEEE
Confidence            99998888   5678999999999999999984

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.02  E-value=7.8e-10  Score=89.97  Aligned_cols=83  Identities=16%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             CCCeEEEECCcchH--HH--HHhc-------C---ceEEEecCC------------------------------------
Q 027441          141 PSLVIADFGCGDAR--LA--KSVK-------N---KVFSFDLVS------------------------------------  170 (223)
Q Consensus       141 ~~~~ILDiGcG~G~--~a--~~la-------~---~v~gvDis~------------------------------------  170 (223)
                      ...+||..||++|.  ++  ..+.       .   +|+|+|+++                                    
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45899999999997  22  2222       1   689999995                                    


Q ss_pred             -------CCCcEEEccCCCCCCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441          171 -------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 -------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                             ..+.|...|+.+.+...+.||+|+|.+||.|++.+   .++..+++.|+|||+|++
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l  173 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL  173 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence                   45678888888744456889999999999999655   999999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=3.6e-10  Score=93.14  Aligned_cols=81  Identities=22%  Similarity=0.412  Sum_probs=64.5

Q ss_pred             CeEEEECCcchHHHHHhc-------CceEEEecCC--------------CCCcEEEccCCC----CCCCCCceeEEEEcc
Q 027441          143 LVIADFGCGDARLAKSVK-------NKVFSFDLVS--------------NDPSVIACDMSN----TPLNSSSVDVAVFCL  197 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la-------~~v~gvDis~--------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~  197 (223)
                      .+||+||||.|.....+.       -.|+++|.|+              .++...+.|+..    -|+..+++|+|++.+
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            389999999998776665       2589999998              233344556533    356789999999999


Q ss_pred             cccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|..+   .+..++..+.++|||||.|++
T Consensus       153 vLSAi~pek~~~a~~nl~~llKPGG~llf  181 (264)
T KOG2361|consen  153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLF  181 (264)
T ss_pred             EEeccChHHHHHHHHHHHHHhCCCcEEEE
Confidence            99988   445999999999999999975

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=4.4e-10  Score=94.75  Aligned_cols=93  Identities=23%  Similarity=0.374  Sum_probs=76.4

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-CceEEEecCC--------CCC-cEEEccCCCCCCCCCceeEEEEccccc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-NKVFSFDLVS--------NDP-SVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-~~v~gvDis~--------~~~-~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ...+++...+.+..+||+|||.|.+...-. ..++|+|++.        .+. ....+|+.++|+.+.+||.+++..++|
T Consensus        35 ~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavih  114 (293)
T KOG1331|consen   35 MVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIH  114 (293)
T ss_pred             HHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhh
Confidence            555666666678999999999998665432 4678899886        344 578899999999999999999999999


Q ss_pred             CC----CHHHHHHHHHHccCCCCEEEc
Q 027441          201 GI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+    ....+++++.|+|+|||...|
T Consensus       115 hlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  115 HLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             hhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            99    345999999999999998653

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.99  E-value=9.6e-10  Score=90.93  Aligned_cols=92  Identities=21%  Similarity=0.273  Sum_probs=72.0

Q ss_pred             HHHHHHHhc--cCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------------------CCCcEEE
Q 027441          130 NIIVKWLKD--HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------------------NDPSVIA  177 (223)
Q Consensus       130 ~~i~~~l~~--~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------------------~~~~~~~  177 (223)
                      ..+.+++..  ..++.+||..|||.|.-+..|+   -+|+|+|+|+                           .++.+.+
T Consensus        24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~  103 (218)
T PF05724_consen   24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC  103 (218)
T ss_dssp             HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred             HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence            344455443  3366799999999999999998   3799999997                           2456788


Q ss_pred             ccCCCCCCCC-CceeEEEEcccccCC---CHHHHHHHHHHccCCCCEE
Q 027441          178 CDMSNTPLNS-SSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEE  221 (223)
Q Consensus       178 ~d~~~lp~~~-~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~l  221 (223)
                      +|+..++... ++||+|+-..+|+.+   ..+.+...+.++|+|||.+
T Consensus       104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~  151 (218)
T PF05724_consen  104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG  151 (218)
T ss_dssp             S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred             cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence            9998877544 589999999998887   4569999999999999994

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.99  E-value=2.8e-09  Score=91.57  Aligned_cols=82  Identities=21%  Similarity=0.214  Sum_probs=61.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccc-
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS-  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~-  198 (223)
                      +..+|||+|||+|.++..++     .+|+|+|+|+                .++.++.+|+.. ++++.+||+|++.-- 
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence            35789999999999998887     3799999996                246788888754 234568999998611 


Q ss_pred             -----c-------cCC-------------CHHHHHHHHHHccCCCCEEEc
Q 027441          199 -----L-------MGI-------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 -----l-------~~~-------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                           +       +|-             ....++..+.++|+|||.|++
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                 1       111             124778999999999999975

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.99  E-value=3.2e-09  Score=88.80  Aligned_cols=81  Identities=26%  Similarity=0.334  Sum_probs=66.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCC---C
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---N  203 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d  203 (223)
                      ....+|||||+|+|.++..++     .+++.+|+-.        .++.++.+|+. -|++.  +|+|+..++||+.   +
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~  175 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDED  175 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHH
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcchHH
Confidence            355789999999999998887     4688888853        68899999998 66665  9999999999977   3


Q ss_pred             HHHHHHHHHHccCCC--CEEEc
Q 027441          204 FPNYLQEAQRVLKPR--GEEQI  223 (223)
Q Consensus       204 ~~~~l~e~~rvLkpg--G~lvi  223 (223)
                      ...+|+.+++.|+||  |.|+|
T Consensus       176 ~~~iL~~~~~al~pg~~g~llI  197 (241)
T PF00891_consen  176 CVKILRNAAAALKPGKDGRLLI  197 (241)
T ss_dssp             HHHHHHHHHHHSEECTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCeEEE
Confidence            449999999999999  99986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.97  E-value=2.5e-09  Score=91.57  Aligned_cols=82  Identities=17%  Similarity=0.212  Sum_probs=65.7

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCCC---------------------CCcEEEccCCC------CCCCCCc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN---------------------DPSVIACDMSN------TPLNSSS  189 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~---------------------~~~~~~~d~~~------lp~~~~s  189 (223)
                      ++..+||+|||-|.-+....    ..++|+||+..                     .+.|+++|...      +++.+.+
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~  196 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR  196 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence            67889999999998655443    68999999971                     24678888743      5556667


Q ss_pred             eeEEEEcccccCC--C---HHHHHHHHHHccCCCCEEE
Q 027441          190 VDVAVFCLSLMGI--N---FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       190 fD~Vi~~~~l~~~--d---~~~~l~e~~rvLkpgG~lv  222 (223)
                      ||+|-|.+++|+.  .   ...+|..+.++|+|||+||
T Consensus       197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI  234 (389)
T KOG1975|consen  197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI  234 (389)
T ss_pred             cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence            9999999999965  3   3489999999999999997

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.97  E-value=8.9e-10  Score=96.42  Aligned_cols=83  Identities=23%  Similarity=0.291  Sum_probs=58.7

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC-------------------------CCCcEEEccCCC------CCC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------------------NDPSVIACDMSN------TPL  185 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------------------~~~~~~~~d~~~------lp~  185 (223)
                      ++..|||||||-|.-..-+.    ..++|+||+.                         -...++.+|...      ++.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            67899999999888555443    6899999996                         012356677643      222


Q ss_pred             CCCceeEEEEcccccCC--CH---HHHHHHHHHccCCCCEEEc
Q 027441          186 NSSSVDVAVFCLSLMGI--NF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 ~~~sfD~Vi~~~~l~~~--d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      ....||+|-|.+++||.  ..   ..+|..+...|+|||+|+.
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg  184 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG  184 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            23699999999999987  32   3799999999999999974

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.97  E-value=2.2e-09  Score=89.79  Aligned_cols=83  Identities=18%  Similarity=0.273  Sum_probs=68.3

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCCC------CCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHHHH
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQE  210 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e  210 (223)
                      ...++||||+|.|..+..++   .+|++.++|+.      .-.|.+.+..++.-.+..||+|.|.++|... +|..+|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~  173 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRD  173 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHHH
Confidence            45789999999999999988   68999999982      2234444555555456789999999999966 88899999


Q ss_pred             HHHccCCCCEEEc
Q 027441          211 AQRVLKPRGEEQI  223 (223)
Q Consensus       211 ~~rvLkpgG~lvi  223 (223)
                      +++.|+|+|.|++
T Consensus       174 i~~~l~p~G~lil  186 (265)
T PF05219_consen  174 IRRALKPNGRLIL  186 (265)
T ss_pred             HHHHhCCCCEEEE
Confidence            9999999999985

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=2.9e-09  Score=91.00  Aligned_cols=92  Identities=22%  Similarity=0.306  Sum_probs=69.2

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~  188 (223)
                      .+.+++.+... ...+|||+|||.|.++..++     .+++-+|++.               .+..+...|+.. +..+ 
T Consensus       147 S~lLl~~l~~~-~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-  223 (300)
T COG2813         147 SRLLLETLPPD-LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-  223 (300)
T ss_pred             HHHHHHhCCcc-CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-
Confidence            35677777766 44599999999999999998     4788999985               222344444433 3333 


Q ss_pred             ceeEEEEcccccCC---C---HHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI---N---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~---d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|+|+--||--   .   -..++.+..+.|++||.|+|
T Consensus       224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence            89999999999832   2   23899999999999999986

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=1.3e-09  Score=93.49  Aligned_cols=80  Identities=24%  Similarity=0.352  Sum_probs=57.1

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC------------CCCc----EEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS------------NDPS----VIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~------------~~~~----~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||+|||+|.++...+    ..|+|+|+.+            ..+.    ....+....+ ....||+|+++-..+
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANILA~  240 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANILAE  240 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhhHH
Confidence            67999999999999998876    5799999998            2222    1111111111 236899999886322


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                        ....+...+.+.|+|||+|++
T Consensus       241 --vl~~La~~~~~~lkpgg~lIl  261 (300)
T COG2264         241 --VLVELAPDIKRLLKPGGRLIL  261 (300)
T ss_pred             --HHHHHHHHHHHHcCCCceEEE
Confidence              123788899999999999985

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.95  E-value=1.9e-09  Score=85.58  Aligned_cols=90  Identities=16%  Similarity=0.075  Sum_probs=64.8

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAV  194 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi  194 (223)
                      .+++.+... ++.+|||||||+|.++..++   .+|+++|+++             .++.++.+|+..+++++..||+|+
T Consensus         4 ~i~~~~~~~-~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi   82 (169)
T smart00650        4 KIVRAANLR-PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVV   82 (169)
T ss_pred             HHHHhcCCC-CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEE
Confidence            455555433 56799999999999999887   5799999996             257788999999988877899999


Q ss_pred             EcccccCCCHHHHHHHHHHc--cCCCCEEEc
Q 027441          195 FCLSLMGINFPNYLQEAQRV--LKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~d~~~~l~e~~rv--LkpgG~lvi  223 (223)
                      +..-++..  ...+..+...  +.++|.|++
T Consensus        83 ~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~  111 (169)
T smart00650       83 GNLPYNIS--TPILFKLLEEPPAFRDAVLMV  111 (169)
T ss_pred             ECCCcccH--HHHHHHHHhcCCCcceEEEEE
Confidence            87665432  2333333322  447777764

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.94  E-value=4.6e-09  Score=91.21  Aligned_cols=80  Identities=20%  Similarity=0.179  Sum_probs=60.6

Q ss_pred             CeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccc---
Q 027441          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS---  198 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~---  198 (223)
                      .+|||+|||+|.++..++     .+|+++|+|+                .++.++.+|+.. ++++.+||+|++.--   
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence            689999999999988886     3799999996                246788888754 234568999998621   


Q ss_pred             ----------ccCC-------------CHHHHHHHHHHccCCCCEEEc
Q 027441          199 ----------LMGI-------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 ----------l~~~-------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                                ++|-             ....++.++.++|+|||.|++
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence                      0111             024788999999999999985

>PRK04457 spermidine synthase; Provisional

Probab=98.94  E-value=2.8e-09  Score=90.55  Aligned_cols=89  Identities=18%  Similarity=0.232  Sum_probs=64.8

Q ss_pred             HHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCC-CCCCCcee
Q 027441          134 KWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNT-PLNSSSVD  191 (223)
Q Consensus       134 ~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~l-p~~~~sfD  191 (223)
                      ..+...++..+|||||||+|.++..++     .+|+++|+++                .++.++.+|+... +-...+||
T Consensus        59 ~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD  138 (262)
T PRK04457         59 GFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTD  138 (262)
T ss_pred             HHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCC
Confidence            333333356789999999999998775     4799999986                3456778887442 22236899


Q ss_pred             EEEEcccccC------CCHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMG------INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~------~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++.. ++.      +....++.++.++|+|||+|+|
T Consensus       139 ~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi  175 (262)
T PRK04457        139 VILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVV  175 (262)
T ss_pred             EEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence            999753 221      1236999999999999999975

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.94  E-value=7.8e-09  Score=87.82  Aligned_cols=82  Identities=21%  Similarity=0.316  Sum_probs=61.7

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||+|||+|.++..++     ..|+|+|+++               .++.++.+|+... +.+++||+|++.-...
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~  186 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPYI  186 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCcC
Confidence            56799999999999888886     4799999996               2467778887442 3357899999853211


Q ss_pred             --------------C------------C-CHHHHHHHHHHccCCCCEEEc
Q 027441          201 --------------G------------I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 --------------~------------~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                                    |            + ....++.++.++|+|||.+++
T Consensus       187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~  236 (275)
T PRK09328        187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL  236 (275)
T ss_pred             CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence                          0            0 134788889999999999985

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.93  E-value=4.9e-09  Score=95.22  Aligned_cols=115  Identities=26%  Similarity=0.357  Sum_probs=79.4

Q ss_pred             chHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccC---CCCeEEEECCcchHHHHHhc---------Cce
Q 027441           96 GKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHS---PSLVIADFGCGDARLAKSVK---------NKV  163 (223)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~---~~~~ILDiGcG~G~~a~~la---------~~v  163 (223)
                      +...++.|..++-.|+.|......           .+.+......   .+..|||||||+|.++...+         .+|
T Consensus       149 ~s~tYe~fE~D~vKY~~Ye~AI~~-----------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~V  217 (448)
T PF05185_consen  149 ESQTYEVFEKDPVKYDQYERAIEE-----------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKV  217 (448)
T ss_dssp             -HHHHHHHCC-HHHHHHHHHHHHH-----------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEE
T ss_pred             ccccHhhHhcCHHHHHHHHHHHHH-----------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEE
Confidence            445678888999989888755432           2333333221   25789999999999875442         489


Q ss_pred             EEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC---CHHHHHHHHHHccCCCCEEE
Q 027441          164 FSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       164 ~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lv  222 (223)
                      ++++-++                ..+.++.+|++++.++. .+|+||+-..-...   -.+.+|..+.|.|+|||+++
T Consensus       218 yAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  218 YAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            9999987                56889999999988754 89999988765533   45688999999999999886

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.93  E-value=3.8e-09  Score=90.95  Aligned_cols=89  Identities=21%  Similarity=0.307  Sum_probs=58.4

Q ss_pred             HHHHHHhcc-CCCCeEEEECCcchHHHHHhc----CceEEEecCC------------C--CCcEEEccCCCCCCCCCcee
Q 027441          131 IIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS------------N--DPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       131 ~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~------------~--~~~~~~~d~~~lp~~~~sfD  191 (223)
                      ..+..|... .++.+|||+|||+|.++...+    .+|+|+|+++            .  ...+.+....  ......||
T Consensus       150 lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~--~~~~~~~d  227 (295)
T PF06325_consen  150 LCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE--DLVEGKFD  227 (295)
T ss_dssp             HHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS--CTCCS-EE
T ss_pred             HHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec--ccccccCC
Confidence            344444332 356899999999999988776    5899999998            1  1123222222  23358999


Q ss_pred             EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+++-...-  ...++..+.++|+|||+|++
T Consensus       228 lvvANI~~~v--L~~l~~~~~~~l~~~G~lIl  257 (295)
T PF06325_consen  228 LVVANILADV--LLELAPDIASLLKPGGYLIL  257 (295)
T ss_dssp             EEEEES-HHH--HHHHHHHCHHHEEEEEEEEE
T ss_pred             EEEECCCHHH--HHHHHHHHHHhhCCCCEEEE
Confidence            9998766321  13667778899999999985

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.90  E-value=6.2e-09  Score=89.32  Aligned_cols=94  Identities=15%  Similarity=0.133  Sum_probs=67.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchH--H--HHHhc---------CceEEEecCC--------------------------
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDAR--L--AKSVK---------NKVFSFDLVS--------------------------  170 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~--~--a~~la---------~~v~gvDis~--------------------------  170 (223)
                      +.+.+.+.......+||..||+||.  +  +..+.         -+|+|+||++                          
T Consensus       104 ~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~r  183 (287)
T PRK10611        104 PILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQR  183 (287)
T ss_pred             HHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHH
Confidence            3344433332234799999999997  2  22221         1589999995                          


Q ss_pred             --------------------CCCcEEEccCCCCCCC-CCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          171 --------------------NDPSVIACDMSNTPLN-SSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 --------------------~~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                                          ..+.|...|+...+++ .+.||+|+|.+++.|++.   ..++..+++.|+|||+|++
T Consensus       184 yF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l  260 (287)
T PRK10611        184 YFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA  260 (287)
T ss_pred             HcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                                1234556677664443 578999999999999944   4999999999999999985

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.90  E-value=7.7e-09  Score=93.89  Aligned_cols=83  Identities=18%  Similarity=0.204  Sum_probs=64.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC----CCCCceeEEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP----LNSSSVDVAV  194 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp----~~~~sfD~Vi  194 (223)
                      .++.+|||+|||+|..+..++      ++|+++|+++               .++.++.+|+..++    +..++||.|+
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  330 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL  330 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence            367899999999999887765      4799999997               35678888988765    4467899999


Q ss_pred             Ec------ccccCC-C----------------HHHHHHHHHHccCCCCEEE
Q 027441          195 FC------LSLMGI-N----------------FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       195 ~~------~~l~~~-d----------------~~~~l~e~~rvLkpgG~lv  222 (223)
                      +.      +++.+. +                ...+|.++.++|||||.|+
T Consensus       331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv  381 (434)
T PRK14901        331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV  381 (434)
T ss_pred             EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            63      233322 2                2478999999999999986

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.88  E-value=3.7e-09  Score=96.20  Aligned_cols=92  Identities=14%  Similarity=0.125  Sum_probs=65.9

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      .+...+....++.+|||+|||+|..+..++      .+|+|+|+++               .++.++.+|+..++ ++.+
T Consensus       240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~  318 (445)
T PRK14904        240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQ  318 (445)
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCC
Confidence            333333333467899999999998776554      4799999997               24677888887765 4578


Q ss_pred             eeEEEEc----cccc--------C-CC----------HHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFC----LSLM--------G-IN----------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~----~~l~--------~-~d----------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++.    ..-+        | .+          ...+|.++.++|+|||+|++
T Consensus       319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy  375 (445)
T PRK14904        319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVY  375 (445)
T ss_pred             CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            9999952    2111        1 11          12689999999999999974

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.88  E-value=4.5e-09  Score=91.05  Aligned_cols=82  Identities=22%  Similarity=0.236  Sum_probs=68.4

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      .+..|||||||+|.++...+    .+|+|+|.|.               .-++++.+.++++.+|...+|+|++-++-++
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~  139 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF  139 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence            78999999999999988776    5899999996               2367788888887776788999999998887


Q ss_pred             CC----HHHHHHHHHHccCCCCEEE
Q 027441          202 IN----FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       202 ~d----~~~~l~e~~rvLkpgG~lv  222 (223)
                      +-    ...+|..-.+.|+|||.++
T Consensus       140 Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  140 LLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHHhhhhhhhhhhhhhccCCCceEc
Confidence            73    3467777779999999875

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.87  E-value=1.8e-08  Score=85.14  Aligned_cols=82  Identities=18%  Similarity=0.296  Sum_probs=59.7

Q ss_pred             CCeEEEECCcchHHHHHhc-----CceEEEecCC------------CCCcEEEccCCCC-CC-CCCceeEEEEccccc--
Q 027441          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSNT-PL-NSSSVDVAVFCLSLM--  200 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------~~~~~~~~d~~~l-p~-~~~sfD~Vi~~~~l~--  200 (223)
                      ..+|||+|||+|.++..++     .+|+|+|+++            ....++.+|+... +- ..+.||+|++.--..  
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence            4589999999999988876     3799999997            2356788887653 21 135799999874221  


Q ss_pred             ------------CC---------C----HHHHHHHHHHccCCCCEEEc
Q 027441          201 ------------GI---------N----FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ------------~~---------d----~~~~l~e~~rvLkpgG~lvi  223 (223)
                                  |-         |    ...++..+.++|+|||.|++
T Consensus       167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l  214 (251)
T TIGR03704       167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV  214 (251)
T ss_pred             hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                        10         0    23778888899999999985

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.87  E-value=1.5e-08  Score=90.77  Aligned_cols=99  Identities=16%  Similarity=0.135  Sum_probs=68.3

Q ss_pred             CCchHHHHHHHHhc-cCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC
Q 027441          125 PELPVNIIVKWLKD-HSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP  184 (223)
Q Consensus       125 p~~~~~~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp  184 (223)
                      |....+.+.+.+.. ..++.+|||+|||+|.++..++     .+|+|+|+|+              .++.++.+|+....
T Consensus       234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~  313 (423)
T PRK14966        234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD  313 (423)
T ss_pred             CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence            44334455555432 2345799999999999988775     4799999997              24678888886543


Q ss_pred             C-CCCceeEEEEcccccC-----C-----------------C----HHHHHHHHHHccCCCCEEEc
Q 027441          185 L-NSSSVDVAVFCLSLMG-----I-----------------N----FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 ~-~~~sfD~Vi~~~~l~~-----~-----------------d----~~~~l~e~~rvLkpgG~lvi  223 (223)
                      + ..++||+|+|.--...     .                 |    ...++..+.+.|+|||.+++
T Consensus       314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil  379 (423)
T PRK14966        314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL  379 (423)
T ss_pred             cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence            3 2457999999543210     0                 0    23677788899999999874

>PHA03411 putative methyltransferase; Provisional

Probab=98.87  E-value=1.1e-08  Score=86.73  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEcccccCCC--
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN--  203 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d--  203 (223)
                      ...+|||+|||+|.++..++     .+|+++|+++          .++.++.+|+..+.. +..||+|++.-.++|.+  
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~  142 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT  142 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence            45799999999999877664     4799999997          357788999987653 46899999988877641  


Q ss_pred             -------------------HHHHHHHHHHccCCCCEEEc
Q 027441          204 -------------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 -------------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                                         ...++.....+|+|+|.+++
T Consensus       143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~  181 (279)
T PHA03411        143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF  181 (279)
T ss_pred             hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence                               23567778899999997753

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.87  E-value=7.5e-09  Score=88.02  Aligned_cols=91  Identities=12%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCce
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      +...+....++.+|||+|||+|..+..++      +.|+++|+++               .++.++..|+..++.....|
T Consensus        62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~f  141 (264)
T TIGR00446        62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKF  141 (264)
T ss_pred             HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCC
Confidence            33333333477899999999999887765      4799999997               34667778877766555679


Q ss_pred             eEEEEcc------cccC--------C---------CHHHHHHHHHHccCCCCEEE
Q 027441          191 DVAVFCL------SLMG--------I---------NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       191 D~Vi~~~------~l~~--------~---------d~~~~l~e~~rvLkpgG~lv  222 (223)
                      |+|++.-      ++.+        .         ....+|..+.++|+|||+|+
T Consensus       142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv  196 (264)
T TIGR00446       142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV  196 (264)
T ss_pred             CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            9999532      1111        0         01259999999999999986

>PRK00811 spermidine synthase; Provisional

Probab=98.86  E-value=6.6e-09  Score=89.24  Aligned_cols=83  Identities=16%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------------CCCcEEEccCCCC-CCCCCceeEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------------NDPSVIACDMSNT-PLNSSSVDVAV  194 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------------~~~~~~~~d~~~l-p~~~~sfD~Vi  194 (223)
                      ...+||+||||+|..+..+.     .+|+++|+++                    +++.++.+|+..+ ....++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            56799999999999988775     3799999997                    2345677777542 23467899999


Q ss_pred             EcccccCC-----CHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMGI-----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~-----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +...-.+.     --..++..+.++|+|||+|++
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~  189 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA  189 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            87543322     125788999999999999874

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.86  E-value=9.9e-09  Score=93.04  Aligned_cols=86  Identities=14%  Similarity=0.157  Sum_probs=63.7

Q ss_pred             ccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC-CCCCceeEEEE
Q 027441          138 DHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAVF  195 (223)
Q Consensus       138 ~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~  195 (223)
                      ...++.+|||+|||+|..+..++      .+|+++|+++               .++.++.+|+..++ +.+++||.|++
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            33477899999999998776655      4799999997               24567888887766 44678999996


Q ss_pred             cc---cccCC--CH------------------HHHHHHHHHccCCCCEEEc
Q 027441          196 CL---SLMGI--NF------------------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~---~l~~~--d~------------------~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..   .+..+  ++                  ..+|..+.++|+|||.|+.
T Consensus       314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY  364 (431)
T PRK14903        314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLY  364 (431)
T ss_pred             CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            21   11111  11                  3679999999999999873

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.86  E-value=9.3e-09  Score=93.15  Aligned_cols=84  Identities=14%  Similarity=0.179  Sum_probs=62.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC--CCCCceeEEEE---
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP--LNSSSVDVAVF---  195 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp--~~~~sfD~Vi~---  195 (223)
                      .++.+|||+|||+|..+..++     .+|+++|+++              ..+.++.+|+..++  +...+||.|++   
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P  322 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP  322 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence            478899999999999887776     3799999997              13567888987654  34678999994   


Q ss_pred             -ccc--cc------CC-C----------HHHHHHHHHHccCCCCEEEc
Q 027441          196 -CLS--LM------GI-N----------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 -~~~--l~------~~-d----------~~~~l~e~~rvLkpgG~lvi  223 (223)
                       +..  +.      |. .          ...+|..+.++|+|||.|++
T Consensus       323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvy  370 (427)
T PRK10901        323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLY  370 (427)
T ss_pred             CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence             221  11      11 1          12689999999999999974

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.84  E-value=9.4e-09  Score=83.56  Aligned_cols=93  Identities=19%  Similarity=0.245  Sum_probs=62.8

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhcCceE-----EEecCC---------------CCC-cEEEccCCCC--CC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVF-----SFDLVS---------------NDP-SVIACDMSNT--PL  185 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la~~v~-----gvDis~---------------~~~-~~~~~d~~~l--p~  185 (223)
                      ++.+.+++...  +.+|||||||||..+.+++.++.     -.|+.+               .++ .-+..|+...  |.
T Consensus        15 l~vL~~~l~~~--~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~   92 (204)
T PF06080_consen   15 LEVLKQYLPDS--GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW   92 (204)
T ss_pred             HHHHHHHhCcc--CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence            34455555432  22599999999999999984221     223322               111 1234555443  22


Q ss_pred             ------CCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441          186 ------NSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 ------~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                            ...+||+|+|..++|-+.+.   .+|..+.++|+|||.|++
T Consensus        93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~  139 (204)
T PF06080_consen   93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFL  139 (204)
T ss_pred             ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence                  34689999999999977554   999999999999999985

The function of this family is unknown.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.83  E-value=1.6e-08  Score=91.51  Aligned_cols=84  Identities=12%  Similarity=0.062  Sum_probs=60.6

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCCC------------C--CcE--EEccCCCCCC--CCCceeEEEEc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------D--PSV--IACDMSNTPL--NSSSVDVAVFC  196 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~------------~--~~~--~~~d~~~lp~--~~~sfD~Vi~~  196 (223)
                      .++.+|||+|||+|..+..++     .+|+|+|+++.            .  +.+  ..+|....++  .+.+||.|++.
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD  316 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD  316 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence            377899999999999877765     48999999971            1  222  4455554443  56789999952


Q ss_pred             ------ccccCC-C----------------HHHHHHHHHHccCCCCEEEc
Q 027441          197 ------LSLMGI-N----------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ------~~l~~~-d----------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                            +++++. +                ...+|.++.++|+|||.|++
T Consensus       317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvy  366 (426)
T TIGR00563       317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVY  366 (426)
T ss_pred             CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence                  233332 2                24799999999999999974

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.80  E-value=8.7e-09  Score=85.12  Aligned_cols=83  Identities=14%  Similarity=0.227  Sum_probs=59.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCCC-------C------------------------------------
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------D------------------------------------  172 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~-------~------------------------------------  172 (223)
                      .+..+|||||..|.++..++     ..|.|+||.+.       +                                    
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            45789999999999999887     47999999970       0                                    


Q ss_pred             -------CcEEEcc----CC-CCCCCCCceeEEEEcccccCC--CH-----HHHHHHHHHccCCCCEEEc
Q 027441          173 -------PSVIACD----MS-NTPLNSSSVDVAVFCLSLMGI--NF-----PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       173 -------~~~~~~d----~~-~lp~~~~sfD~Vi~~~~l~~~--d~-----~~~l~e~~rvLkpgG~lvi  223 (223)
                             +.|...+    .. -+.+....||+|+|--+-.|+  +|     ..+|..++++|.|||+|++
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv  207 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV  207 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence                   0000000    00 012234679999988777755  43     4999999999999999986

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.80  E-value=1.6e-08  Score=84.49  Aligned_cols=90  Identities=11%  Similarity=0.105  Sum_probs=65.6

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-C----
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P----  184 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p----  184 (223)
                      ++..+....+..+|||||||+|+.+..++      .+|+++|+++                .++.++.+|+... +    
T Consensus        59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~  138 (234)
T PLN02781         59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN  138 (234)
T ss_pred             HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence            44444444467899999999999666554      5899999997                3467788887542 1    


Q ss_pred             -CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          185 -LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 -~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       .+..+||+|++...-  -....++..+.++|+|||++++
T Consensus       139 ~~~~~~fD~VfiDa~k--~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        139 NDPKPEFDFAFVDADK--PNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             CCCCCCCCEEEECCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence             124689999875431  1456889999999999999874

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.77  E-value=1.1e-07  Score=80.72  Aligned_cols=82  Identities=13%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             CCeEEEECCcchH--HHHHh--c----------CceEEEecCC-------------------------------------
Q 027441          142 SLVIADFGCGDAR--LAKSV--K----------NKVFSFDLVS-------------------------------------  170 (223)
Q Consensus       142 ~~~ILDiGcG~G~--~a~~l--a----------~~v~gvDis~-------------------------------------  170 (223)
                      ..+||-.||+||.  ++.++  .          -+|+|+||+.                                     
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            6899999999997  33322  1          2688999995                                     


Q ss_pred             -------CCCcEEEccCCCCCCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441          171 -------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 -------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                             ..|.|-..|+...++..+.||+|+|..|+.++|.+   .++..++..|+|||+|+|
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence                   23456666765554345779999999999999665   999999999999999986

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.77  E-value=9.6e-09  Score=84.05  Aligned_cols=83  Identities=17%  Similarity=0.232  Sum_probs=59.4

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC-----------C---C-CcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------N---D-PSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------~---~-~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ...++||.|||-|..+..+.    .+|-.+|+++           .   . ..+.+..++++..+...||+|++.+++.|
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh  134 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH  134 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence            45799999999999998775    4666677665           1   1 24556667776655689999999999999


Q ss_pred             C---CHHHHHHHHHHccCCCCEEEc
Q 027441          202 I---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +   |...+|..+...|+|+|+++|
T Consensus       135 LTD~dlv~fL~RCk~~L~~~G~Ivv  159 (218)
T PF05891_consen  135 LTDEDLVAFLKRCKQALKPNGVIVV  159 (218)
T ss_dssp             S-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhCcCCcEEEE
Confidence            9   667999999999999999986

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.76  E-value=3.2e-08  Score=90.06  Aligned_cols=82  Identities=13%  Similarity=0.100  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC--CCCCceeEEEEc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFC  196 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~  196 (223)
                      .++.+|||+|||+|..+..++      .+|+++|+++               .++.++.+|+..++  ++ ++||+|++.
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D  327 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD  327 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence            367899999999999887765      4799999996               24678888987653  33 789999964


Q ss_pred             cc------ccCC-------C----------HHHHHHHHHHccCCCCEEE
Q 027441          197 LS------LMGI-------N----------FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       197 ~~------l~~~-------d----------~~~~l~e~~rvLkpgG~lv  222 (223)
                      .-      +.+.       .          ...+|.++.++|+|||.|+
T Consensus       328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv  376 (444)
T PRK14902        328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV  376 (444)
T ss_pred             CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            32      1110       0          1258999999999999997

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.75  E-value=4.4e-08  Score=90.52  Aligned_cols=81  Identities=20%  Similarity=0.237  Sum_probs=59.0

Q ss_pred             CCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc-
Q 027441          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL-  199 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-  199 (223)
                      ..+|||+|||+|.++..++     .+|+++|+|+                .++.++.+|+.. +++...||+|++.--. 
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence            4689999999999988775     4799999996                245677777643 2345689999984211 


Q ss_pred             -------------cCC-------------CHHHHHHHHHHccCCCCEEEc
Q 027441          200 -------------MGI-------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 -------------~~~-------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                                   .|-             .+..++..+.++|+|||.|++
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l  267 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL  267 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence                         110             023577888999999999985

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=1.1e-07  Score=77.43  Aligned_cols=94  Identities=20%  Similarity=0.251  Sum_probs=70.3

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----CCCcEEEccCCCCC--------CCCCcee
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----~~~~~~~~d~~~lp--------~~~~sfD  191 (223)
                      ..|.+...-..++.+|+||||.+|.|++.++      ..|+|+|+.+    +++.++.+|+..-+        +....+|
T Consensus        34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D  113 (205)
T COG0293          34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVD  113 (205)
T ss_pred             HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence            3444444444578999999999999999887      3499999998    67889999997644        3355689


Q ss_pred             EEEEcccc--------cCC----CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSL--------MGI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l--------~~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++-++-        +|.    -...++.-+..+|+|||.+++
T Consensus       114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~  157 (205)
T COG0293         114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA  157 (205)
T ss_pred             eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence            99987765        222    123677777889999999874

>PHA03412 putative methyltransferase; Provisional

Probab=98.69  E-value=1.1e-07  Score=79.04  Aligned_cols=79  Identities=14%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             CCCeEEEECCcchHHHHHhc--------CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEccccc--
Q 027441          141 PSLVIADFGCGDARLAKSVK--------NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM--  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la--------~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~--  200 (223)
                      .+.+|||+|||+|.++..++        ..|+++|+++          .++.++.+|+...++ +.+||+||+.--+.  
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~  127 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI  127 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence            46899999999999988664        2699999997          456788999977665 56899999875443  


Q ss_pred             --------CC--C-HHHHHHHHHHccCCCCE
Q 027441          201 --------GI--N-FPNYLQEAQRVLKPRGE  220 (223)
Q Consensus       201 --------~~--d-~~~~l~e~~rvLkpgG~  220 (223)
                              |.  . ...++..+.++++||+.
T Consensus       128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence                    11  1 34688888997777765

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.69  E-value=2.9e-08  Score=80.81  Aligned_cols=81  Identities=21%  Similarity=0.313  Sum_probs=60.8

Q ss_pred             CeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCC-CC--CCCCceeEEEEcccc
Q 027441          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TP--LNSSSVDVAVFCLSL  199 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~-lp--~~~~sfD~Vi~~~~l  199 (223)
                      ..+||||||.|.++..+|     ..++|+|+..               .|+.++.+|+.. ++  ++++++|.|+..+-=
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD   98 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD   98 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence            489999999999999888     4799999996               688999999877 22  457899999876643


Q ss_pred             cCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -|.         --+.++..+.++|+|||.|.+
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence            222         124899999999999999875

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.67  E-value=1.1e-07  Score=77.60  Aligned_cols=94  Identities=9%  Similarity=0.061  Sum_probs=63.8

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHH-hc---CceEEEecCC---------------CCCcEEEccCCC-CCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKS-VK---NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~-la---~~v~gvDis~---------------~~~~~~~~d~~~-lp~~~~s  189 (223)
                      +.+++.+....++.+|||+|||+|.++.. ++   .+|+++|+++               .++.++.+|+.. ++.....
T Consensus        42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~  121 (199)
T PRK10909         42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTP  121 (199)
T ss_pred             HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCC
Confidence            34555554323567999999999999875 43   5899999997               346677888754 2222457


Q ss_pred             eeEEEEcccccCCCHHHHHHHHHH--ccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINFPNYLQEAQR--VLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~~~~l~e~~r--vLkpgG~lvi  223 (223)
                      ||+|++.--+..--.+.++..+..  +|.|+|+++|
T Consensus       122 fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~v  157 (199)
T PRK10909        122 HNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYV  157 (199)
T ss_pred             ceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEE
Confidence            999998776433233455555554  3789998875

>PRK01581 speE spermidine synthase; Validated

Probab=98.66  E-value=5.9e-08  Score=85.44  Aligned_cols=83  Identities=20%  Similarity=0.142  Sum_probs=59.7

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------------CCCcEEEccCCC-CCCCCCceeE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSN-TPLNSSSVDV  192 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------------~~~~~~~~d~~~-lp~~~~sfD~  192 (223)
                      ...+||+||||+|..+..+.     .+|+++|+++                      +++.++.+|+.. ++-..+.||+
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV  229 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV  229 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence            55799999999999777665     4799999997                      133445566544 2333568999


Q ss_pred             EEEccccc---CC---CHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLM---GI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~---~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++...-.   ..   --..++..+.+.|+|||+|++
T Consensus       230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~  266 (374)
T PRK01581        230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVC  266 (374)
T ss_pred             EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            99885311   11   124799999999999999874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.4e-07  Score=78.73  Aligned_cols=87  Identities=21%  Similarity=0.271  Sum_probs=71.8

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      .|+..+... ++.+|||.|.|+|.++.+|+      ++|+.+|+-+                .++.+..+|+.+.-+++ 
T Consensus        85 ~I~~~~gi~-pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-  162 (256)
T COG2519          85 YIVARLGIS-PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-  162 (256)
T ss_pred             HHHHHcCCC-CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-
Confidence            455655554 89999999999999999998      6899999986                33777788888776655 


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .||+|+.-.-    +|+.++..+..+|+|||.+++
T Consensus       163 ~vDav~LDmp----~PW~~le~~~~~Lkpgg~~~~  193 (256)
T COG2519         163 DVDAVFLDLP----DPWNVLEHVSDALKPGGVVVV  193 (256)
T ss_pred             ccCEEEEcCC----ChHHHHHHHHHHhCCCcEEEE
Confidence            8999985544    889999999999999999875

>PLN02366 spermidine synthase

Probab=98.64  E-value=1e-07  Score=82.79  Aligned_cols=84  Identities=12%  Similarity=0.081  Sum_probs=62.1

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC--CCCCCceeEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT--PLNSSSVDVA  193 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l--p~~~~sfD~V  193 (223)
                      +...+||+||||.|.++..++     .+|+.+|+++                   +++.++.+|+...  ..+.+.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            356899999999999988886     3688888886                   2466777886432  1235689999


Q ss_pred             EEcccccCCC-----HHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGIN-----FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~d-----~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++...-.+..     -..+++.+.++|+|||+|++
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~  204 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT  204 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            9865433221     24789999999999999963

>TIGR00417 speE spermidine synthase

Probab=98.61  E-value=1.5e-07  Score=80.32  Aligned_cols=83  Identities=13%  Similarity=0.054  Sum_probs=58.6

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCCC-------------------CCcEEEccCCC-CCCCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------------------DPSVIACDMSN-TPLNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~-------------------~~~~~~~d~~~-lp~~~~sfD~Vi~  195 (223)
                      ...+||+||||+|.++..+.     .+|+++|+++.                   ++.++.+|... +.-..++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            34699999999999887764     46899999861                   23344455432 1112468999998


Q ss_pred             cccccCC---C--HHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI---N--FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~---d--~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .......   .  ...++..+.+.|+|||.+++
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~  184 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVA  184 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence            7653221   1  45889999999999999974

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.61  E-value=1.9e-07  Score=76.38  Aligned_cols=91  Identities=31%  Similarity=0.444  Sum_probs=70.3

Q ss_pred             HHHHHHHhccC-------CCCeEEEECCcchHHHHHh--cCceEEEecCCCCCcEEEccCCCCCCC---CCceeEEEEcc
Q 027441          130 NIIVKWLKDHS-------PSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDMSNTPLN---SSSVDVAVFCL  197 (223)
Q Consensus       130 ~~i~~~l~~~~-------~~~~ILDiGcG~G~~a~~l--a~~v~gvDis~~~~~~~~~d~~~lp~~---~~sfD~Vi~~~  197 (223)
                      .+++++|....       ...++|||||=+......-  .-.|+.+|+.+....+..+|+...|++   ++.||+|.++.
T Consensus        33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SL  112 (219)
T PF11968_consen   33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSL  112 (219)
T ss_pred             HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEE
Confidence            45566655431       2369999999644322211  124999999999999999999888874   67999999999


Q ss_pred             cccCC-CHH---HHHHHHHHccCCCCE
Q 027441          198 SLMGI-NFP---NYLQEAQRVLKPRGE  220 (223)
Q Consensus       198 ~l~~~-d~~---~~l~e~~rvLkpgG~  220 (223)
                      ||.++ ++.   ..+..+++.|+|+|.
T Consensus       113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  113 VLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             EEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            99999 443   899999999999999

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.60  E-value=1.2e-07  Score=78.90  Aligned_cols=84  Identities=14%  Similarity=0.226  Sum_probs=55.8

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------CCCc---EEEccCCCCC-----CCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------NDPS---VIACDMSNTP-----LNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------~~~~---~~~~d~~~lp-----~~~~sf  190 (223)
                      .++..+....++.+|||+|||||.++..++    .+|+|+|+++        .+..   +...|+..+.     ..-..|
T Consensus        65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~  144 (228)
T TIGR00478        65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATF  144 (228)
T ss_pred             HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceee
Confidence            344444333367799999999999999886    5799999997        1222   2333444322     122467


Q ss_pred             eEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441          191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv  222 (223)
                      |+++++..+       .+..+.+.|+| |.++
T Consensus       145 DvsfiS~~~-------~l~~i~~~l~~-~~~~  168 (228)
T TIGR00478       145 DVSFISLIS-------ILPELDLLLNP-NDLT  168 (228)
T ss_pred             eEEEeehHh-------HHHHHHHHhCc-CeEE
Confidence            777766653       57788888998 7765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.60  E-value=5.4e-08  Score=86.04  Aligned_cols=84  Identities=21%  Similarity=0.312  Sum_probs=74.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++..++|+|||-|....+++    ..++|+|.++                ....++.+|+-..|+++++||.+.+..+.
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~  188 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV  188 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence            356689999999999988887    5789999987                34456888999999999999999999999


Q ss_pred             cCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .|. +...++.|++|+|+|||++++
T Consensus       189 ~~~~~~~~~y~Ei~rv~kpGG~~i~  213 (364)
T KOG1269|consen  189 CHAPDLEKVYAEIYRVLKPGGLFIV  213 (364)
T ss_pred             ccCCcHHHHHHHHhcccCCCceEEe
Confidence            999 899999999999999999874

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.59  E-value=1.8e-07  Score=85.19  Aligned_cols=89  Identities=16%  Similarity=0.309  Sum_probs=63.3

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC----CCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN----TPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~----lp~~~~  188 (223)
                      .+++++... ++.+|||+|||+|.++..++   .+|+|+|+|+               .++.++.+|+..    +++.+.
T Consensus       288 ~vl~~l~~~-~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~  366 (443)
T PRK13168        288 RALEWLDPQ-PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALG  366 (443)
T ss_pred             HHHHHhcCC-CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcC
Confidence            344444333 66899999999999999887   5799999997               357788998854    335567


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++.---..  ....+..+.+ |+|+++++|
T Consensus       367 ~fD~Vi~dPPr~g--~~~~~~~l~~-~~~~~ivyv  398 (443)
T PRK13168        367 GFDKVLLDPPRAG--AAEVMQALAK-LGPKRIVYV  398 (443)
T ss_pred             CCCEEEECcCCcC--hHHHHHHHHh-cCCCeEEEE
Confidence            8999987543222  2355555555 688888775

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.57  E-value=6.3e-08  Score=92.81  Aligned_cols=83  Identities=11%  Similarity=0.098  Sum_probs=63.0

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC-----------------CCCcEEEccCCCCC-CCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTP-LNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~  198 (223)
                      ++.+|||+|||+|.++..++    .+|+++|+|+                 .++.++.+|+.++. -...+||+|++.--
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            57899999999999999887    3699999997                 14678888875421 11468999998521


Q ss_pred             -----------ccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          199 -----------LMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 -----------l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                                 +... +...++..+.++|+|||+|++
T Consensus       618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~  654 (702)
T PRK11783        618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYF  654 (702)
T ss_pred             CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence                       1112 456889999999999999874

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=3.4e-07  Score=78.51  Aligned_cols=78  Identities=26%  Similarity=0.391  Sum_probs=54.7

Q ss_pred             eEEEECCcchHHHHHhc-----CceEEEecCC------------CC---CcEEEccCCCCCCCCCceeEEEEcccc----
Q 027441          144 VIADFGCGDARLAKSVK-----NKVFSFDLVS------------ND---PSVIACDMSNTPLNSSSVDVAVFCLSL----  199 (223)
Q Consensus       144 ~ILDiGcG~G~~a~~la-----~~v~gvDis~------------~~---~~~~~~d~~~lp~~~~sfD~Vi~~~~l----  199 (223)
                      +|||||||+|.++..++     ..|+|+|+|+            ..   +.++.+|.... + .+.||+|+|+--.    
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-c-CCceeEEEeCCCCCCCc
Confidence            79999999999999988     3899999998            12   22333433221 1 2489999986321    


Q ss_pred             -cCC-------C--------------HHHHHHHHHHccCCCCEEEc
Q 027441          200 -MGI-------N--------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 -~~~-------d--------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                       .+.       +              ...++.++.+.|+|||.+++
T Consensus       191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l  236 (280)
T COG2890         191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL  236 (280)
T ss_pred             ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence             111       1              22888899999999999875

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.54  E-value=1.8e-07  Score=74.72  Aligned_cols=84  Identities=21%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------------CCCcEEEccCCC-C---CCCCCceeEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------------NDPSVIACDMSN-T---PLNSSSVDVA  193 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------------~~~~~~~~d~~~-l---p~~~~sfD~V  193 (223)
                      ..+.+|||||||+|..+..++     .+|+..|..+                 ..+.+...|-.+ .   .+....||+|
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I  123 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI  123 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence            467899999999998777665     5799999886                 112233333222 1   1234689999


Q ss_pred             EEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++.+++.. ..+.++..+.++|+|+|.+++
T Consensus       124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~  154 (173)
T PF10294_consen  124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLL  154 (173)
T ss_dssp             EEES--S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred             EEecccchHHHHHHHHHHHHHHhCCCCEEEE
Confidence            999999976 778999999999999988653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.2e-07  Score=75.36  Aligned_cols=88  Identities=20%  Similarity=0.287  Sum_probs=65.5

Q ss_pred             HHHHHHhc-cCCCCeEEEECCcchHHHHHhc-------CceEEEecCC-------------------------CCCcEEE
Q 027441          131 IIVKWLKD-HSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS-------------------------NDPSVIA  177 (223)
Q Consensus       131 ~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~-------------------------~~~~~~~  177 (223)
                      .++++|.. ..|+.++||+|+|+|+++..++       ..++|+|.-+                         .++.+++
T Consensus        71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv  150 (237)
T KOG1661|consen   71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV  150 (237)
T ss_pred             HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence            44555542 2388999999999999887766       1236776654                         3556788


Q ss_pred             ccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          178 CDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       178 ~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|.....-+...||.|++..+.     +....++...|+|||.|+|
T Consensus       151 GDgr~g~~e~a~YDaIhvGAaa-----~~~pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  151 GDGRKGYAEQAPYDAIHVGAAA-----SELPQELLDQLKPGGRLLI  191 (237)
T ss_pred             CCccccCCccCCcceEEEccCc-----cccHHHHHHhhccCCeEEE
Confidence            8988777778999999988653     5666777888999999875

>PLN02476 O-methyltransferase

Probab=98.51  E-value=3.1e-07  Score=78.46  Aligned_cols=91  Identities=12%  Similarity=0.067  Sum_probs=68.4

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CC-C-
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP-L-  185 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp-~-  185 (223)
                      .++..+....+..+|||||||+|+.+.+++      ++|+++|.++                ..+.++.+|+.. ++ + 
T Consensus       108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~  187 (278)
T PLN02476        108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI  187 (278)
T ss_pred             HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence            444445444467899999999999888876      3799999997                357778888744 22 1 


Q ss_pred             ---CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          186 ---NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 ---~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         ..++||+|+.-..=  -+.+.++..+.++|+|||++++
T Consensus       188 ~~~~~~~FD~VFIDa~K--~~Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        188 QNGEGSSYDFAFVDADK--RMYQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             hcccCCCCCEEEECCCH--HHHHHHHHHHHHhcCCCcEEEE
Confidence               24689999976541  2567899999999999999975

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.50  E-value=1.4e-07  Score=84.55  Aligned_cols=83  Identities=16%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------C--CCcEEEccCCCCC----CCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N--DPSVIACDMSNTP----LNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~--~~~~~~~d~~~lp----~~~~sfD~Vi~  195 (223)
                      ++.+|||+|||+|.++..++    .+|+++|+++               .  ++.++.+|+..+.    ....+||+|++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            57899999999999887644    4799999997               1  4568888886531    12468999997


Q ss_pred             cccccCC----------CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI----------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~----------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .--....          +...++..+.++|+|||+|++
T Consensus       300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~  337 (396)
T PRK15128        300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLT  337 (396)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence            7332111          344666778899999999873

>PRK03612 spermidine synthase; Provisional

Probab=98.48  E-value=2.7e-07  Score=85.69  Aligned_cols=83  Identities=20%  Similarity=0.149  Sum_probs=61.7

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------------CCCcEEEccCCCC-CCCCCceeE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSNT-PLNSSSVDV  192 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------------~~~~~~~~d~~~l-p~~~~sfD~  192 (223)
                      +..+|||||||+|..+..+.     .+|+++|+++                      ++++++.+|.... ...+++||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            56889999999999888775     4799999986                      1345666776542 223468999


Q ss_pred             EEEcccccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++.....+.      --..+++.+.+.|+|||.+++
T Consensus       377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~  413 (521)
T PRK03612        377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVV  413 (521)
T ss_pred             EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEE
Confidence            9998654332      123689999999999999974

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.44  E-value=2.2e-07  Score=76.16  Aligned_cols=90  Identities=17%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CC----
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP----  184 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp----  184 (223)
                      ++..+.......+||+|||++|+.+.+++      ++|+.+|+++                .++.++.+|+.. ++    
T Consensus        36 lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~  115 (205)
T PF01596_consen   36 LLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN  115 (205)
T ss_dssp             HHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred             HHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence            33343333367899999999999888887      5899999997                357788888743 11    


Q ss_pred             -CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          185 -LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 -~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       ...++||+|+.-..=  -+...++..+.++|+|||++++
T Consensus       116 ~~~~~~fD~VFiDa~K--~~y~~y~~~~~~ll~~ggvii~  153 (205)
T PF01596_consen  116 DGEEGQFDFVFIDADK--RNYLEYFEKALPLLRPGGVIIA  153 (205)
T ss_dssp             TTTTTSEEEEEEESTG--GGHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCCCceeEEEEcccc--cchhhHHHHHhhhccCCeEEEE
Confidence             124689999976642  2567889999999999999985

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.44  E-value=4.9e-07  Score=76.04  Aligned_cols=88  Identities=20%  Similarity=0.348  Sum_probs=64.8

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCC--
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLN--  186 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~--  186 (223)
                      .|+.++... |+.+|||.|.|+|.++..|+      ++|+.+|+.+                .++.+...|+....|.  
T Consensus        31 ~I~~~l~i~-pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~  109 (247)
T PF08704_consen   31 YILMRLDIR-PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE  109 (247)
T ss_dssp             HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred             HHHHHcCCC-CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence            445555444 89999999999999999887      5899999986                4678889998654442  


Q ss_pred             -CCceeEEEEcccccCCCHHHHHHHHHHcc-CCCCEEEc
Q 027441          187 -SSSVDVAVFCLSLMGINFPNYLQEAQRVL-KPRGEEQI  223 (223)
Q Consensus       187 -~~sfD~Vi~~~~l~~~d~~~~l~e~~rvL-kpgG~lvi  223 (223)
                       +..||.|+.-.-    +|..++..+.++| +|||.|++
T Consensus       110 ~~~~~DavfLDlp----~Pw~~i~~~~~~L~~~gG~i~~  144 (247)
T PF08704_consen  110 LESDFDAVFLDLP----DPWEAIPHAKRALKKPGGRICC  144 (247)
T ss_dssp             -TTSEEEEEEESS----SGGGGHHHHHHHE-EEEEEEEE
T ss_pred             ccCcccEEEEeCC----CHHHHHHHHHHHHhcCCceEEE
Confidence             367999986554    7789999999999 89999874

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.43  E-value=4e-07  Score=72.78  Aligned_cols=83  Identities=22%  Similarity=0.260  Sum_probs=53.9

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCCC----CCcEEEccCCCC----------CCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSN----DPSVIACDMSNT----------PLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~----~~~~~~~d~~~l----------p~~~~sfD~Vi~~~~l~  200 (223)
                      .+.+||||||++|.|+..+.      .+|+|+|+.+.    .+.++.+|+.+.          +-....||+|+|-.+..
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~  102 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN  102 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence            45899999999999999886      46899999974    445556665321          11126899999998654


Q ss_pred             CC-----CHH-------HHHHHHHHccCCCCEEEc
Q 027441          201 GI-----NFP-------NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~-----d~~-------~~l~e~~rvLkpgG~lvi  223 (223)
                      ..     |..       ..+.-+...|+|||.+++
T Consensus       103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~  137 (181)
T PF01728_consen  103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI  137 (181)
T ss_dssp             --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence            33     211       555566678999998774

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.43  E-value=6.5e-07  Score=78.02  Aligned_cols=89  Identities=13%  Similarity=0.197  Sum_probs=60.0

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCC-CCCceeE
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDV  192 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~-~~~sfD~  192 (223)
                      +.+++... ++.+|||+|||+|.++..++   .+|+|+|+++               .++.|+.+|+..+.. ....||+
T Consensus       165 v~~~l~~~-~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~  243 (315)
T PRK03522        165 ARDWVREL-PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDL  243 (315)
T ss_pred             HHHHHHhc-CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeE
Confidence            34444433 46899999999999999888   5799999997               357889999876542 2457999


Q ss_pred             EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++.---.... ..++ ++..-+.|++++++
T Consensus       244 Vv~dPPr~G~~-~~~~-~~l~~~~~~~ivyv  272 (315)
T PRK03522        244 VLVNPPRRGIG-KELC-DYLSQMAPRFILYS  272 (315)
T ss_pred             EEECCCCCCcc-HHHH-HHHHHcCCCeEEEE
Confidence            99764322211 2222 33334677777764

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.43  E-value=1.3e-06  Score=64.67  Aligned_cols=79  Identities=29%  Similarity=0.449  Sum_probs=59.8

Q ss_pred             EEEECCcchHH--HHHhcC---ceEEEecCC--------CC-------CcEEEccCCC--CCCCC-CceeEEEEcccccC
Q 027441          145 IADFGCGDARL--AKSVKN---KVFSFDLVS--------ND-------PSVIACDMSN--TPLNS-SSVDVAVFCLSLMG  201 (223)
Q Consensus       145 ILDiGcG~G~~--a~~la~---~v~gvDis~--------~~-------~~~~~~d~~~--lp~~~-~sfD~Vi~~~~l~~  201 (223)
                      +||+|||+|..  ...+..   .++|+|+++        ..       +.+..++...  +++.. ..||++.+...+++
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  131 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHL  131 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhc
Confidence            99999999984  333333   688999986        11       3567777766  78877 58999944444445


Q ss_pred             CCHHHHHHHHHHccCCCCEEEc
Q 027441          202 INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+....+.++.++|+|+|.+++
T Consensus       132 ~~~~~~~~~~~~~l~~~g~~~~  153 (257)
T COG0500         132 LPPAKALRELLRVLKPGGRLVL  153 (257)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEE
Confidence            5778999999999999998864

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.41  E-value=4.8e-07  Score=77.27  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=53.4

Q ss_pred             hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC------------CCCcEEEccCCCCCCCCCceeE
Q 027441          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      ..+.+++.+... ++.+|||||||+|.++..++   .+|+|+|+++            .++.++.+|+..+++++-.+|.
T Consensus        30 i~~~i~~~l~~~-~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~  108 (272)
T PRK00274         30 ILDKIVDAAGPQ-PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK  108 (272)
T ss_pred             HHHHHHHhcCCC-CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence            344555655433 67899999999999999887   4799999997            3577889999888775433577


Q ss_pred             EEEcccc
Q 027441          193 AVFCLSL  199 (223)
Q Consensus       193 Vi~~~~l  199 (223)
                      |+++.-.
T Consensus       109 vv~NlPY  115 (272)
T PRK00274        109 VVANLPY  115 (272)
T ss_pred             EEEeCCc
Confidence            8776543

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.40  E-value=1.3e-06  Score=75.50  Aligned_cols=90  Identities=22%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCcee
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      .+++...+. .+..|||+|||+|.++...+    .+|++++.|.               .++.++.+-++++.++ +..|
T Consensus       168 Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~D  245 (517)
T KOG1500|consen  168 AILENHSDF-QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVD  245 (517)
T ss_pred             HHHhccccc-CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhcc
Confidence            445544455 78999999999999888765    5899999986               5677888889988876 5699


Q ss_pred             EEEEcccccCC-CH--HHHHHHHHHccCCCCEEE
Q 027441          192 VAVFCLSLMGI-NF--PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       192 ~Vi~~~~l~~~-d~--~~~l~e~~rvLkpgG~lv  222 (223)
                      +||+.-.-.-+ +.  -.-.-.+.|.|+|.|.++
T Consensus       246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             EEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            99976544333 21  122234559999999864

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.38  E-value=1.4e-06  Score=71.88  Aligned_cols=91  Identities=18%  Similarity=0.236  Sum_probs=67.3

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEE-ccCCC-CC-C
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIA-CDMSN-TP-L  185 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~-~d~~~-lp-~  185 (223)
                      .++..+....+..+||+||++.|+.+.+++      .+++.+|+++                ..+.++. +|..+ +. +
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~  128 (219)
T COG4122          49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL  128 (219)
T ss_pred             HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence            344444444477999999999999998887      4699999997                2355556 35522 22 4


Q ss_pred             CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          186 NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 ~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..++||+|+.-..=  -+.+.++..+.++|+|||++++
T Consensus       129 ~~~~fDliFIDadK--~~yp~~le~~~~lLr~GGliv~  164 (219)
T COG4122         129 LDGSFDLVFIDADK--ADYPEYLERALPLLRPGGLIVA  164 (219)
T ss_pred             cCCCccEEEEeCCh--hhCHHHHHHHHHHhCCCcEEEE
Confidence            57899999855431  1568999999999999999984

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.38  E-value=8.4e-07  Score=75.18  Aligned_cols=68  Identities=21%  Similarity=0.328  Sum_probs=53.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVA  193 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~V  193 (223)
                      +.+.+.+... ++.+|||||||+|.++..++   .+|+|+|+++             .++.++.+|+..++++  .||.|
T Consensus        19 ~~iv~~~~~~-~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~V   95 (258)
T PRK14896         19 DRIVEYAEDT-DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKV   95 (258)
T ss_pred             HHHHHhcCCC-CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEE
Confidence            4555554433 67899999999999999887   5799999996             3577889999888765  38999


Q ss_pred             EEccccc
Q 027441          194 VFCLSLM  200 (223)
Q Consensus       194 i~~~~l~  200 (223)
                      +++.-++
T Consensus        96 v~NlPy~  102 (258)
T PRK14896         96 VSNLPYQ  102 (258)
T ss_pred             EEcCCcc
Confidence            9886654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.38  E-value=1.1e-06  Score=79.70  Aligned_cols=81  Identities=17%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC----CCCCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN----TPLNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~~  198 (223)
                      ++.+|||+|||+|.++..++   .+|+|+|+++               .++.++.+|+..    +++.+.+||+|++.-.
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP  371 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP  371 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence            56799999999999999987   5799999997               367888999854    2344567999996443


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -..+ ...++..+.+ |+|++++++
T Consensus       372 r~G~-~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       372 RKGC-AAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             CCCC-CHHHHHHHHh-cCCCEEEEE
Confidence            2221 2455555554 789888764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02672 methionine S-methyltransferase

Probab=98.35  E-value=2.3e-06  Score=84.70  Aligned_cols=99  Identities=20%  Similarity=0.318  Sum_probs=66.9

Q ss_pred             CCchHHHHHHHHhccC----CCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------C-------------
Q 027441          125 PELPVNIIVKWLKDHS----PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------N-------------  171 (223)
Q Consensus       125 p~~~~~~i~~~l~~~~----~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------~-------------  171 (223)
                      |....+.+.+.|...+    ++.+|||||||+|.++..++     .+|+|+|+|+           .             
T Consensus        98 PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~  177 (1082)
T PLN02672         98 PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG  177 (1082)
T ss_pred             CchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence            3333445555544331    23589999999999999886     4799999997           1             


Q ss_pred             -------CCcEEEccCCCCCCC-CCceeEEEEccccc---------------------C-----C---C----------H
Q 027441          172 -------DPSVIACDMSNTPLN-SSSVDVAVFCLSLM---------------------G-----I---N----------F  204 (223)
Q Consensus       172 -------~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l~---------------------~-----~---d----------~  204 (223)
                             ++.++.+|+...... ...||+||++--..                     |     .   .          .
T Consensus       178 ~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~y  257 (1082)
T PLN02672        178 EGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLI  257 (1082)
T ss_pred             ccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHH
Confidence                   256778887653311 23699999873210                     1     1   0          1


Q ss_pred             HHHHHHHHHccCCCCEEEc
Q 027441          205 PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       205 ~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..++.++.++|+|||.|++
T Consensus       258 r~i~~~a~~~L~pgG~l~l  276 (1082)
T PLN02672        258 ARAVEEGISVIKPMGIMIF  276 (1082)
T ss_pred             HHHHHHHHHhccCCCEEEE
Confidence            4788889999999999985

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.35  E-value=7.1e-07  Score=75.16  Aligned_cols=91  Identities=11%  Similarity=0.065  Sum_probs=67.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CC-C-
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP-L-  185 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp-~-  185 (223)
                      .++..+....+..+||+||+++|+.+.+++      ++|+.+|+++                ..+.++.+++.. ++ + 
T Consensus        69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~  148 (247)
T PLN02589         69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI  148 (247)
T ss_pred             HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence            444444444467899999999999888776      4799999987                456777787644 22 1 


Q ss_pred             ----CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          186 ----NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 ----~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                          ..++||+|+.-..  .-....++..+.++|+|||+|++
T Consensus       149 ~~~~~~~~fD~iFiDad--K~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        149 EDGKYHGTFDFIFVDAD--KDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             hccccCCcccEEEecCC--HHHhHHHHHHHHHhcCCCeEEEE
Confidence                1368999997655  22567888899999999999975

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.33  E-value=2.8e-06  Score=71.65  Aligned_cols=95  Identities=26%  Similarity=0.371  Sum_probs=63.0

Q ss_pred             HHHHHHHHhcc--CCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEc----cC-
Q 027441          129 VNIIVKWLKDH--SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIAC----DM-  180 (223)
Q Consensus       129 ~~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~----d~-  180 (223)
                      ++.+++.+...  ..+..|||+|||+|..+..+.     ..|+|+|.|.                ..+.++.-    |. 
T Consensus       134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~  213 (328)
T KOG2904|consen  134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS  213 (328)
T ss_pred             HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc
Confidence            34455544432  245679999999999888776     4789999997                23444422    22 


Q ss_pred             CCCCCCCCceeEEEEcccccCC-C--------------------------HHHHHHHHHHccCCCCEEEc
Q 027441          181 SNTPLNSSSVDVAVFCLSLMGI-N--------------------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       181 ~~lp~~~~sfD~Vi~~~~l~~~-d--------------------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...++..+.+|+++++--.... |                          ...++.-+.|+|+|||.+++
T Consensus       214 ~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l  283 (328)
T KOG2904|consen  214 DEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL  283 (328)
T ss_pred             cccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence            2244667899999987432211 1                          12666778899999999874

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.32  E-value=4e-06  Score=67.58  Aligned_cols=76  Identities=22%  Similarity=0.236  Sum_probs=62.4

Q ss_pred             eEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccCCC
Q 027441          144 VIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN  203 (223)
Q Consensus       144 ~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d  203 (223)
                      +|+|||+|.|.-+..|+     .+++.+|...               .++.++.+++++ +.....||+|++..+.   +
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---~  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA---P  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---S
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---C
Confidence            89999999998777766     4789999886               678888888888 5567899999998873   5


Q ss_pred             HHHHHHHHHHccCCCCEEEc
Q 027441          204 FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...++.-+.+.|++||.+++
T Consensus       127 l~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  127 LDKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             HHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEE
Confidence            67899999999999999874

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.31  E-value=1.4e-06  Score=72.39  Aligned_cols=81  Identities=15%  Similarity=0.230  Sum_probs=64.1

Q ss_pred             CeEEEECCcchHHHHHhc-----CceEEEecCC--------------C-CCcEEEccCCCC---CCCCCceeEEEEcccc
Q 027441          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------N-DPSVIACDMSNT---PLNSSSVDVAVFCLSL  199 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~-~~~~~~~d~~~l---p~~~~sfD~Vi~~~~l  199 (223)
                      ..+||||||.|.+...+|     ..++|+++..              - |+.+++.|+..+   -+++++.|-|...+.=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            589999999999999888     3689999986              3 778888888542   2345699999977754


Q ss_pred             cCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -|.         -.+.++..+.++|+|||.|.+
T Consensus       130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~  162 (227)
T COG0220         130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF  162 (227)
T ss_pred             CCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence            332         234999999999999999864

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.26  E-value=6.1e-06  Score=66.81  Aligned_cols=93  Identities=11%  Similarity=0.079  Sum_probs=60.7

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCC-C-C-CC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT-P-L-NS  187 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~l-p-~-~~  187 (223)
                      .+...+...-.+.+|||++||+|.++..++    ..|+++|.++                .++.++.+|+... . + ..
T Consensus        39 a~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~  118 (189)
T TIGR00095        39 LFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK  118 (189)
T ss_pred             HHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc
Confidence            344444333367899999999999988886    4799999996                2456778888432 1 1 12


Q ss_pred             -CceeEEEEcccccCCCHHHHHHHHH--HccCCCCEEEc
Q 027441          188 -SSVDVAVFCLSLMGINFPNYLQEAQ--RVLKPRGEEQI  223 (223)
Q Consensus       188 -~sfD~Vi~~~~l~~~d~~~~l~e~~--rvLkpgG~lvi  223 (223)
                       ..||+|+..=-+.......++..+.  .+|+++|++++
T Consensus       119 ~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~  157 (189)
T TIGR00095       119 PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVV  157 (189)
T ss_pred             CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEE
Confidence             2478887655444333445555443  46889998874

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.26  E-value=2.5e-06  Score=71.98  Aligned_cols=67  Identities=21%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCcee--
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD--  191 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD--  191 (223)
                      +.+++.+... ++.+|||||||+|.++..++   ..|+++|+++             .++.++.+|+..++++  .||  
T Consensus        19 ~~i~~~~~~~-~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~   95 (253)
T TIGR00755        19 QKIVEAANVL-EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQ   95 (253)
T ss_pred             HHHHHhcCCC-CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCc
Confidence            4455554433 67899999999999999987   5799999986             3467788999888875  466  


Q ss_pred             -EEEEcccc
Q 027441          192 -VAVFCLSL  199 (223)
Q Consensus       192 -~Vi~~~~l  199 (223)
                       +|++...+
T Consensus        96 ~~vvsNlPy  104 (253)
T TIGR00755        96 LKVVSNLPY  104 (253)
T ss_pred             ceEEEcCCh
Confidence             66665543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.24  E-value=2e-06  Score=70.96  Aligned_cols=82  Identities=18%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             CCCeEEEECCcchHHHHHhc---C-ceEEEecCC-----------------CCCcEEEccCCCC--CCCCCceeEEEEc-
Q 027441          141 PSLVIADFGCGDARLAKSVK---N-KVFSFDLVS-----------------NDPSVIACDMSNT--PLNSSSVDVAVFC-  196 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~-~v~gvDis~-----------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~-  196 (223)
                      .+.+|||.+.|-|+.+....   + +|+.++.++                 ..+.++.+|+..+  .|+|.+||+|+-. 
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP  213 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP  213 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence            58999999999999888765   3 777777665                 3457778887553  5789999999832 


Q ss_pred             --cccc-CCCHHHHHHHHHHccCCCCEEE
Q 027441          197 --LSLM-GINFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       197 --~~l~-~~d~~~~l~e~~rvLkpgG~lv  222 (223)
                        +++. ++--..+..|++|+|+|||.|+
T Consensus       214 PRfS~AgeLYseefY~El~RiLkrgGrlF  242 (287)
T COG2521         214 PRFSLAGELYSEEFYRELYRILKRGGRLF  242 (287)
T ss_pred             CccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence              2222 2234589999999999999986

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.23  E-value=4e-06  Score=74.79  Aligned_cols=81  Identities=15%  Similarity=0.157  Sum_probs=57.7

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCC-CCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+|||+|||+|.++..++   ..|+|+|+++               .++.++.+|+..+.. ....||+|++.---.+
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G  312 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG  312 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence            45799999999999998887   5799999997               356788888865321 1245999987654333


Q ss_pred             CCHHHHHHHHHHccCCCCEEEc
Q 027441          202 INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+ ..++..+. .++|++++++
T Consensus       313 ~~-~~~l~~l~-~~~p~~ivyv  332 (374)
T TIGR02085       313 IG-KELCDYLS-QMAPKFILYS  332 (374)
T ss_pred             Cc-HHHHHHHH-hcCCCeEEEE
Confidence            32 24445554 4789988875

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.22  E-value=1.4e-06  Score=73.48  Aligned_cols=83  Identities=19%  Similarity=0.364  Sum_probs=55.9

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC-------------------------------------------CCC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------------------------------------NDP  173 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------------------------------------~~~  173 (223)
                      .+.++||||||+-.+-..-+    .+++..|.++                                           ..+
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            45789999999976533222    4678888875                                           001


Q ss_pred             -cEEEccCCCC-CCCC-----CceeEEEEcccccCC--CH---HHHHHHHHHccCCCCEEEc
Q 027441          174 -SVIACDMSNT-PLNS-----SSVDVAVFCLSLMGI--NF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       174 -~~~~~d~~~l-p~~~-----~sfD~Vi~~~~l~~~--d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                       .++.+|+... |+..     ..||+|++++.++..  |.   ..++..+.++|||||.|++
T Consensus       136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil  197 (256)
T PF01234_consen  136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL  197 (256)
T ss_dssp             EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence             2567888664 3333     259999999999966  44   4899999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=3.3e-06  Score=67.67  Aligned_cols=54  Identities=20%  Similarity=0.364  Sum_probs=43.4

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      .+.+|+|+|||||.++...+    ..|+|+|+.+              .++.|+++|+..+.   ..||.|+.+-
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNP  116 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNP  116 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECC
Confidence            56789999999999887665    6899999997              36889999998875   4467777653

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.21  E-value=3.7e-06  Score=73.35  Aligned_cols=93  Identities=25%  Similarity=0.301  Sum_probs=70.2

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEE-EccCCCCCCCCCcee
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVI-ACDMSNTPLNSSSVD  191 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~-~~d~~~lp~~~~sfD  191 (223)
                      .++-.|....++..|||==||||.++..+.   .+++|.|+..               ....+. .+|+.++||++.+||
T Consensus       187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vd  266 (347)
T COG1041         187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVD  266 (347)
T ss_pred             HHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccc
Confidence            444455555578899999999999877665   7999999986               122233 449999999999999


Q ss_pred             EEEEcccc------cCCC----HHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSL------MGIN----FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l------~~~d----~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .|++---.      ....    ...+|..+.++|++||++++
T Consensus       267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf  308 (347)
T COG1041         267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF  308 (347)
T ss_pred             eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence            99975422      1112    45999999999999999875

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.20  E-value=7.9e-06  Score=64.24  Aligned_cols=82  Identities=15%  Similarity=0.199  Sum_probs=67.8

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC----------CCCcEEEccCCCCC-----CCCCceeEEEEcccc
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------NDPSVIACDMSNTP-----LNSSSVDVAVFCLSL  199 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------~~~~~~~~d~~~lp-----~~~~sfD~Vi~~~~l  199 (223)
                      .+.-||++|.|||.++..+.      ..+++++.++          +.+.++.+|+.++.     +.+..||.|+|+.-+
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl  127 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL  127 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence            66799999999999999886      4688999997          56678888887654     456789999999987


Q ss_pred             cCCCH---HHHHHHHHHccCCCCEEE
Q 027441          200 MGINF---PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       200 ~~~d~---~~~l~e~~rvLkpgG~lv  222 (223)
                      --+..   ..+|+.+...|.+||.|+
T Consensus       128 l~~P~~~~iaile~~~~rl~~gg~lv  153 (194)
T COG3963         128 LNFPMHRRIAILESLLYRLPAGGPLV  153 (194)
T ss_pred             ccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence            76633   388999999999999886

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.20  E-value=8.3e-06  Score=74.68  Aligned_cols=85  Identities=11%  Similarity=0.091  Sum_probs=62.0

Q ss_pred             ccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC-CCCCceeEEE-
Q 027441          138 DHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAV-  194 (223)
Q Consensus       138 ~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi-  194 (223)
                      ...++.+|||++||+|.=+..++      +.|+++|+++               .++.+...|...++ .....||.|+ 
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence            33478999999999999766665      4799999997               34556667766543 2246799999 


Q ss_pred             ---EcccccCC-CH------------------HHHHHHHHHccCCCCEEE
Q 027441          195 ---FCLSLMGI-NF------------------PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       195 ---~~~~l~~~-d~------------------~~~l~e~~rvLkpgG~lv  222 (223)
                         |+..-+.- ++                  ..+|..+.++|||||+|+
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV  239 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV  239 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence               55443322 22                  278999999999999986

>PRK04148 hypothetical protein; Provisional

Probab=98.18  E-value=5.7e-06  Score=63.11  Aligned_cols=67  Identities=18%  Similarity=0.173  Sum_probs=50.6

Q ss_pred             HHHHHHhccCCCCeEEEECCcchH-HHHHhc---CceEEEecCCC--------CCcEEEccCCCCCCC-CCceeEEEEcc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDAR-LAKSVK---NKVFSFDLVSN--------DPSVIACDMSNTPLN-SSSVDVAVFCL  197 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~-~a~~la---~~v~gvDis~~--------~~~~~~~d~~~lp~~-~~sfD~Vi~~~  197 (223)
                      .|.+++... .+.+|||||||.|. ++..|+   ..|+++|+++.        .+.++.+|+.+.++. ...+|+|.+..
T Consensus         7 ~l~~~~~~~-~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir   85 (134)
T PRK04148          7 FIAENYEKG-KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR   85 (134)
T ss_pred             HHHHhcccc-cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence            444444333 45789999999996 787777   58999999983        457889999887655 46789998776


Q ss_pred             c
Q 027441          198 S  198 (223)
Q Consensus       198 ~  198 (223)
                      -
T Consensus        86 p   86 (134)
T PRK04148         86 P   86 (134)
T ss_pred             C
Confidence            5

>PLN02823 spermine synthase

Probab=98.18  E-value=5.1e-06  Score=73.02  Aligned_cols=83  Identities=18%  Similarity=0.170  Sum_probs=59.4

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCC-CCCCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  195 (223)
                      ...+||.||+|.|..+..+.     .+|+.+|+++                   +++.++.+|... +.-..++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            45789999999999888665     4689999997                   244566677644 2333578999998


Q ss_pred             cccc-------cCCCHHHHHH-HHHHccCCCCEEEc
Q 027441          196 CLSL-------MGINFPNYLQ-EAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l-------~~~d~~~~l~-e~~rvLkpgG~lvi  223 (223)
                      -..=       .++--..++. .+.+.|+|||+|++
T Consensus       183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~  218 (336)
T PLN02823        183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT  218 (336)
T ss_pred             cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence            7421       1111236777 89999999999874

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.18  E-value=7.3e-06  Score=69.71  Aligned_cols=82  Identities=24%  Similarity=0.282  Sum_probs=63.4

Q ss_pred             CCCeEEEECCcchHHHHHhcC---ceEEEecCC-----------------------------------------------
Q 027441          141 PSLVIADFGCGDARLAKSVKN---KVFSFDLVS-----------------------------------------------  170 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la~---~v~gvDis~-----------------------------------------------  170 (223)
                      ...+||-=|||.|.++-.++.   .+.|.|.|-                                               
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~  135 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD  135 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence            357999999999999999883   566666662                                               


Q ss_pred             --------CCCcEEEccCCCCCCCC---CceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441          171 --------NDPSVIACDMSNTPLNS---SSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       171 --------~~~~~~~~d~~~lp~~~---~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                              .+..+..+|+..+..++   ++||+|+.++.+.-. +...+|..+.++|||||+.|
T Consensus       136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence                    13345567776655444   799999999776654 78899999999999999765

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.17  E-value=1.5e-05  Score=69.48  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             CCeEEEECCcchHHHHHhc---CceEEEecCC-----------CCCcEEEccCCCCCCCCCceeEEEEcccccCC---CH
Q 027441          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NF  204 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la---~~v~gvDis~-----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d~  204 (223)
                      -...+|+|.|.|..+..+.   .+|-+++...           +.+..+.+|+..- .|.+  |+|++.+++||.   |.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDedc  254 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDEDC  254 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChHHH
Confidence            4789999999999888776   4455555543           2256666776443 3333  699999999988   67


Q ss_pred             HHHHHHHHHccCCCCEEEc
Q 027441          205 PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       205 ~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+|..++..|+|||.++|
T Consensus       255 vkiLknC~~sL~~~GkIiv  273 (342)
T KOG3178|consen  255 VKILKNCKKSLPPGGKIIV  273 (342)
T ss_pred             HHHHHHHHHhCCCCCEEEE
Confidence            7999999999999999985

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.17  E-value=2.3e-06  Score=79.17  Aligned_cols=83  Identities=14%  Similarity=0.068  Sum_probs=64.0

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCC--CCCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~  198 (223)
                      ....+||||||.|.++..+|     ..++|+|+..               .|+.++..|+..+  -++++++|.|+..+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            46789999999999988888     3689999996               3566666666432  267889999987765


Q ss_pred             ccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      =-|.         --+.++..+.++|+|||.|.+
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence            4332         124999999999999999864

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.12  E-value=4.6e-06  Score=72.05  Aligned_cols=70  Identities=21%  Similarity=0.252  Sum_probs=52.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCce
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      +.|++.+... ++..|||||||+|.++..++   .+|+|+|+++                .++.++.+|+...+++  .|
T Consensus        26 ~~Iv~~~~~~-~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~  102 (294)
T PTZ00338         26 DKIVEKAAIK-PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YF  102 (294)
T ss_pred             HHHHHhcCCC-CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--cc
Confidence            4455544433 67899999999999998887   5799999996                2467888998776653  68


Q ss_pred             eEEEEcccccCC
Q 027441          191 DVAVFCLSLMGI  202 (223)
Q Consensus       191 D~Vi~~~~l~~~  202 (223)
                      |+|+++.-.+..
T Consensus       103 d~VvaNlPY~Is  114 (294)
T PTZ00338        103 DVCVANVPYQIS  114 (294)
T ss_pred             CEEEecCCcccC
Confidence            999877655433

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.07  E-value=1.1e-05  Score=73.21  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=62.0

Q ss_pred             CCCeEEEECCcchHHHHHhc-CceEEEecCCC------CCcEEE------cc-CCCCCCCCCceeEEEEcccccCC----
Q 027441          141 PSLVIADFGCGDARLAKSVK-NKVFSFDLVSN------DPSVIA------CD-MSNTPLNSSSVDVAVFCLSLMGI----  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-~~v~gvDis~~------~~~~~~------~d-~~~lp~~~~sfD~Vi~~~~l~~~----  202 (223)
                      .-..|+|+.+|.|.++.+|. ..|..+.+.+.      .+.+-.      .| .+.++.-+.+||+|++..+|...    
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC  444 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRC  444 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccc
Confidence            34789999999999999998 34555544441      111111      11 25567778999999999988855    


Q ss_pred             CHHHHHHHHHHccCCCCEEEc
Q 027441          203 NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +...+|-|+.|+|+|||.++|
T Consensus       445 ~~~~illEmDRILRP~G~~ii  465 (506)
T PF03141_consen  445 EMEDILLEMDRILRPGGWVII  465 (506)
T ss_pred             cHHHHHHHhHhhcCCCceEEE
Confidence            778999999999999999986

; GO: 0008168 methyltransferase activity

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=7e-06  Score=63.14  Aligned_cols=60  Identities=23%  Similarity=0.428  Sum_probs=50.4

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      .+.+++|+|||.|-++....    ..|+|+||.+              .+++++++|+..+-+..+.||.++..--+-
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG  125 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence            67899999999999886554    5799999998              356789999999888889999999776553

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.00  E-value=1.3e-05  Score=71.62  Aligned_cols=79  Identities=16%  Similarity=0.060  Sum_probs=58.7

Q ss_pred             CCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ..+|||++||+|..+..++     ..|+++|+++               .++.+..+|+..+......||+|++.- +  
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~--  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F--  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence            4689999999999999886     2799999997               234467777755321145799998753 1  


Q ss_pred             CCHHHHHHHHHHccCCCCEEEc
Q 027441          202 INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -.+..++..+.+.+++||+|+|
T Consensus       135 Gs~~~~l~~al~~~~~~gilyv  156 (382)
T PRK04338        135 GSPAPFLDSAIRSVKRGGLLCV  156 (382)
T ss_pred             CCcHHHHHHHHHHhcCCCEEEE
Confidence            2345788887888999999975

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.95  E-value=1.3e-05  Score=65.46  Aligned_cols=79  Identities=23%  Similarity=0.280  Sum_probs=55.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      .++..|||+-||-|.++..++     ..|+++|++|                ..+..+.+|+..++. ...||.|++..-
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp  178 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP  178 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence            378999999999999998887     4699999997                346678899887765 789999998664


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEE
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lv  222 (223)
                      -+   ...+|..+.+++++||++-
T Consensus       179 ~~---~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  179 ES---SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             SS---GGGGHHHHHHHEEEEEEEE
T ss_pred             HH---HHHHHHHHHHHhcCCcEEE
Confidence            22   1368888999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.93  E-value=0.00011  Score=58.91  Aligned_cols=84  Identities=20%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC----CCCcEEEc-cCCCC--------CCCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIAC-DMSNT--------PLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----~~~~~~~~-d~~~l--------p~~~~sfD~Vi~~~~l~  200 (223)
                      .|+.+|||+||.+|.|+....      +.|.|+|+-.    +.+.++.+ |+.+.        .+++...|+|++-++-.
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapn  147 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPN  147 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCC
Confidence            578999999999999999776      4689999986    44455555 66442        24678899999887754


Q ss_pred             CC-----CHH-------HHHHHHHHccCCCCEEEc
Q 027441          201 GI-----NFP-------NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~-----d~~-------~~l~e~~rvLkpgG~lvi  223 (223)
                      .+     |-.       .++.-....++|+|.|+.
T Consensus       148 aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc  182 (232)
T KOG4589|consen  148 ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVC  182 (232)
T ss_pred             CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEE
Confidence            33     322       445555677889999873

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.90  E-value=9.9e-05  Score=63.04  Aligned_cols=87  Identities=16%  Similarity=0.162  Sum_probs=65.0

Q ss_pred             HhccCCCCeEEEECCcchHHHHHhc-------CceEEEecCC---------------CCC-cEEEccCCCC---CCCCCc
Q 027441          136 LKDHSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS---------------NDP-SVIACDMSNT---PLNSSS  189 (223)
Q Consensus       136 l~~~~~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~---------------~~~-~~~~~d~~~l---p~~~~s  189 (223)
                      |.......+||||.||.|.+.....       ..|.-.|.++               .++ .|..+|+.+.   .--+-.
T Consensus       130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~  209 (311)
T PF12147_consen  130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPA  209 (311)
T ss_pred             HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCC
Confidence            4444567899999999998755443       3677889997               334 7888888653   111344


Q ss_pred             eeEEEEcccccCC-CH---HHHHHHHHHccCCCCEEE
Q 027441          190 VDVAVFCLSLMGI-NF---PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d~---~~~l~e~~rvLkpgG~lv  222 (223)
                      .++++.++.++.+ |-   ...|..+.+.|.|||+|+
T Consensus       210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lI  246 (311)
T PF12147_consen  210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLI  246 (311)
T ss_pred             CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence            6999999999988 42   367889999999999997

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.86  E-value=9.7e-05  Score=60.95  Aligned_cols=85  Identities=16%  Similarity=0.187  Sum_probs=61.7

Q ss_pred             HHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-C-----CCC
Q 027441          135 WLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-T-----PLN  186 (223)
Q Consensus       135 ~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-l-----p~~  186 (223)
                      .++.. ...++||||.=||+.+..++      ++|+++|+.+                ..+.++.+++.+ +     ..+
T Consensus        68 li~~~-~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~  146 (237)
T KOG1663|consen   68 LIRLL-NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGE  146 (237)
T ss_pred             HHHHh-CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCC
Confidence            33444 67899999988887555554      6899999997                345667766533 1     135


Q ss_pred             CCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .++||+++.-.-   = +...++.++.++||+||+|++
T Consensus       147 ~~tfDfaFvDad---K~nY~~y~e~~l~Llr~GGvi~~  181 (237)
T KOG1663|consen  147 SGTFDFAFVDAD---KDNYSNYYERLLRLLRVGGVIVV  181 (237)
T ss_pred             CCceeEEEEccc---hHHHHHHHHHHHhhcccccEEEE
Confidence            689999984321   1 455899999999999999985

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=9.9e-05  Score=58.88  Aligned_cols=81  Identities=21%  Similarity=0.335  Sum_probs=56.7

Q ss_pred             CCeEEEECCcchHHHHHhc------CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          142 SLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ...+||||||+|..+..|+      ..+.++|+++              ..+..+++|+..-- ..++.|++++.--.--
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYVp  122 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYVP  122 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcCc
Confidence            5789999999999988887      2467999998              34456677764422 2377888876543221


Q ss_pred             C------------------C----HHHHHHHHHHccCCCCEEEc
Q 027441          202 I------------------N----FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~------------------d----~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .                  +    ...++..+-.+|.|.|.|++
T Consensus       123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl  166 (209)
T KOG3191|consen  123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL  166 (209)
T ss_pred             CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence            1                  1    23677777788899999874

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.82  E-value=8.9e-05  Score=67.18  Aligned_cols=90  Identities=26%  Similarity=0.435  Sum_probs=72.0

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      .|+.++...  ..++|-+|||.-.+...+-    ..|+.+|+|+              .-..+...|+..+.|++++||+
T Consensus        40 ~i~~~~~p~--~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdi  117 (482)
T KOG2352|consen   40 SIMKYLSPS--DFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDI  117 (482)
T ss_pred             HHHHhhchh--hceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeE
Confidence            444444422  1389999999998888775    5789999997              2345778999999999999999


Q ss_pred             EEEcccccCC--CH---------HHHHHHHHHccCCCCEEE
Q 027441          193 AVFCLSLMGI--NF---------PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       193 Vi~~~~l~~~--d~---------~~~l~e~~rvLkpgG~lv  222 (223)
                      |+.-+.++++  |-         ...+.+++|+|+|||+++
T Consensus       118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~  158 (482)
T KOG2352|consen  118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI  158 (482)
T ss_pred             EEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence            9999999987  21         267899999999999975

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.81  E-value=5.9e-05  Score=60.50  Aligned_cols=86  Identities=26%  Similarity=0.326  Sum_probs=58.5

Q ss_pred             hccCCCCeEEEECCcchHHHHHhc---C--c---------eEEEecCC----------------CCCcEEEccCCCCCCC
Q 027441          137 KDHSPSLVIADFGCGDARLAKSVK---N--K---------VFSFDLVS----------------NDPSVIACDMSNTPLN  186 (223)
Q Consensus       137 ~~~~~~~~ILDiGcG~G~~a~~la---~--~---------v~gvDis~----------------~~~~~~~~d~~~lp~~  186 (223)
                      ....++..|||--||+|.+....+   .  .         ++|+|+++                ..+.+...|+..+++.
T Consensus        24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~  103 (179)
T PF01170_consen   24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP  103 (179)
T ss_dssp             TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT
T ss_pred             hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc
Confidence            333467899999999999876554   2  2         67999997                2456788899999988


Q ss_pred             CCceeEEEEcccccCC-C--------HHHHHHHHHHccCCCCEEE
Q 027441          187 SSSVDVAVFCLSLMGI-N--------FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~-d--------~~~~l~e~~rvLkpgG~lv  222 (223)
                      ++++|+|++.--+--- .        ...++.++.++|++...++
T Consensus       104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l  148 (179)
T PF01170_consen  104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL  148 (179)
T ss_dssp             TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred             cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence            8999999987654321 1        2378899999999944443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=97.81  E-value=9.3e-05  Score=62.85  Aligned_cols=77  Identities=13%  Similarity=0.001  Sum_probs=57.1

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      +...+||=||.|.|..++.+.   .+|+-+||.+                   +++.++. .+.  ....++||+||+-.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEcC
Confidence            456899999999999999887   4799999986                   2233322 111  11236899999775


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .    +.+.+++.+.|.|+|||+++.
T Consensus       148 ~----~~~~fy~~~~~~L~~~Gi~v~  169 (262)
T PRK00536        148 E----PDIHKIDGLKRMLKEDGVFIS  169 (262)
T ss_pred             C----CChHHHHHHHHhcCCCcEEEE
Confidence            3    447888999999999999974

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.80  E-value=0.00042  Score=60.52  Aligned_cols=84  Identities=14%  Similarity=0.218  Sum_probs=56.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc---------CceEEEecCC---------------CCCcE--EEccCCC----CCC--CC
Q 027441          140 SPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS---------------NDPSV--IACDMSN----TPL--NS  187 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~---------------~~~~~--~~~d~~~----lp~--~~  187 (223)
                      +++..|+|+|||.|.=+..|.         ..++++|+|.               +.+.+  +++|..+    +|-  ..
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence            356789999999998544432         2478999996               22333  5666643    221  12


Q ss_pred             CceeEEEEcc-cccCCCHH---HHHHHHHH-ccCCCCEEEc
Q 027441          188 SSVDVAVFCL-SLMGINFP---NYLQEAQR-VLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~-~l~~~d~~---~~l~e~~r-vLkpgG~lvi  223 (223)
                      ....+|++.+ ++..++++   .+|..+.+ +|.|||.|+|
T Consensus       155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            3457777666 55566544   88899999 9999999876

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.80  E-value=3.4e-06  Score=68.54  Aligned_cols=82  Identities=16%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             CCeEEEECCcchHHHHHhc---CceEEEecCCCCC------cEEEccCCCCCCCCCceeEEEEccccc-CCCHHHHHHHH
Q 027441          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVSNDP------SVIACDMSNTPLNSSSVDVAVFCLSLM-GINFPNYLQEA  211 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la---~~v~gvDis~~~~------~~~~~d~~~lp~~~~sfD~Vi~~~~l~-~~d~~~~l~e~  211 (223)
                      +.++||+|+|.|.++..++   .+|++.++|....      .+-+..+-+..-.+-.||+|.|...+. |.++-.+|..+
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di  192 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDI  192 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHHH
Confidence            4789999999999999888   5788999886211      111222222222345699999999998 56999999999


Q ss_pred             HHccCC-CCEEEc
Q 027441          212 QRVLKP-RGEEQI  223 (223)
Q Consensus       212 ~rvLkp-gG~lvi  223 (223)
                      +-+|+| +|.+++
T Consensus       193 ~~vl~psngrviv  205 (288)
T KOG3987|consen  193 HLVLAPSNGRVIV  205 (288)
T ss_pred             HHHhccCCCcEEE
Confidence            999999 888764

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.79  E-value=5.5e-05  Score=62.29  Aligned_cols=78  Identities=14%  Similarity=0.103  Sum_probs=59.7

Q ss_pred             CCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      +.+++|||+|.|.-+..++     .+|+-+|...               .|+.++.+.++++.-....||+|++..+.  
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva--  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA--  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence            5899999999998777765     4688888776               56888888888876322229999988763  


Q ss_pred             CCHHHHHHHHHHccCCCCEEE
Q 027441          202 INFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       202 ~d~~~~l~e~~rvLkpgG~lv  222 (223)
                       +...++.=+...|++||.++
T Consensus       146 -~L~~l~e~~~pllk~~g~~~  165 (215)
T COG0357         146 -SLNVLLELCLPLLKVGGGFL  165 (215)
T ss_pred             -chHHHHHHHHHhcccCCcch
Confidence             34567777888999988764

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.79  E-value=9.2e-05  Score=64.79  Aligned_cols=74  Identities=14%  Similarity=0.036  Sum_probs=52.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCCCHHHHH
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL  208 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l  208 (223)
                      .++..+|||||++|.|+..|.   ..|+|||..+        .++.....|..........+|.|+|-.+-   .|.++.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~rva  286 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPARVA  286 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHHHHH
Confidence            478899999999999999997   5899999886        44556666654443226779999988773   334444


Q ss_pred             HHHHHccC
Q 027441          209 QEAQRVLK  216 (223)
Q Consensus       209 ~e~~rvLk  216 (223)
                      .-+.+-|.
T Consensus       287 ~lm~~Wl~  294 (357)
T PRK11760        287 ELMAQWLV  294 (357)
T ss_pred             HHHHHHHh
Confidence            44444443

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.78  E-value=4.8e-06  Score=64.59  Aligned_cols=76  Identities=20%  Similarity=0.264  Sum_probs=53.2

Q ss_pred             eEEEECCcchHHHHHhcCceEEEecCC-CCCcEEEccCCCCCCCCCceeEEEEcccccCC---CHHHHHHHHHHccCCCC
Q 027441          144 VIADFGCGDARLAKSVKNKVFSFDLVS-NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRG  219 (223)
Q Consensus       144 ~ILDiGcG~G~~a~~la~~v~gvDis~-~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG  219 (223)
                      -.+-||||.=.+..    --+-+|+.. +.+++++-.....+|.+++.|+|.+.++++|+   .-..++.+++|+|||||
T Consensus         5 ~kv~ig~G~~r~np----gWi~~d~ed~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G   80 (185)
T COG4627           5 EKVKIGAGGKRVNP----GWIITDVEDRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGG   80 (185)
T ss_pred             eEEEEeccccccCC----CceeeehhcccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCc
Confidence            36778998744331    112234432 23444333345578999999999999999999   33489999999999999


Q ss_pred             EEEc
Q 027441          220 EEQI  223 (223)
Q Consensus       220 ~lvi  223 (223)
                      +|-|
T Consensus        81 ~Lri   84 (185)
T COG4627          81 KLRI   84 (185)
T ss_pred             EEEE
Confidence            9864

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.78  E-value=0.00011  Score=63.09  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=59.6

Q ss_pred             CeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC-CCCCCceeEEEEcc
Q 027441          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT-PLNSSSVDVAVFCL  197 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~  197 (223)
                      .+||-||.|.|..++.+.     .+++.+||.+                   +++.++..|...+ .-....||+|++-.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            699999999999999887     5789999987                   3345556665332 11123799999765


Q ss_pred             cccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .=. .      .-..+++.+.+.|+|+|+++.
T Consensus       158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~  188 (282)
T COG0421         158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVA  188 (282)
T ss_pred             CCC-CCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence            433 2      236999999999999999874

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.73  E-value=2.1e-05  Score=63.42  Aligned_cols=95  Identities=14%  Similarity=0.100  Sum_probs=64.2

Q ss_pred             HHHHHHHHhcc-CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCC-C---
Q 027441          129 VNIIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSN-T---  183 (223)
Q Consensus       129 ~~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~-l---  183 (223)
                      .+.+.+.|... -.+.++||+=||+|.++....    .+|+.||.++                ..+.++..|+.. +   
T Consensus        29 realFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~  108 (183)
T PF03602_consen   29 REALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKL  108 (183)
T ss_dssp             HHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHH
T ss_pred             HHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhh
Confidence            35566666654 478999999999999988665    5899999996                234566677532 2   


Q ss_pred             CCCCCceeEEEEcccccCCC-HHHHHHHHH--HccCCCCEEEc
Q 027441          184 PLNSSSVDVAVFCLSLMGIN-FPNYLQEAQ--RVLKPRGEEQI  223 (223)
Q Consensus       184 p~~~~sfD~Vi~~~~l~~~d-~~~~l~e~~--rvLkpgG~lvi  223 (223)
                      ......||+|++.--...-. .+.++..+.  .+|+++|++++
T Consensus       109 ~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~  151 (183)
T PF03602_consen  109 AKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII  151 (183)
T ss_dssp             HHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred             cccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence            12468899999876665554 377788777  78999999885

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.69  E-value=6.4e-05  Score=67.23  Aligned_cols=88  Identities=15%  Similarity=0.141  Sum_probs=65.3

Q ss_pred             HhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC-----------------CCCcEEEccCCCC----CCCCCce
Q 027441          136 LKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNT----PLNSSSV  190 (223)
Q Consensus       136 l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------------~~~~~~~~d~~~l----p~~~~sf  190 (223)
                      +...-.+.+|||+=|=||.++...+    .+|++||+|.                 ..+.++++|+..+    .-...+|
T Consensus       212 l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f  291 (393)
T COG1092         212 LGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF  291 (393)
T ss_pred             HhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence            3333358899999999999999887    4899999996                 3456888888543    1224589


Q ss_pred             eEEEEcccc-----cC----C-CHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSL-----MG----I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l-----~~----~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|+.----     ..    . +...++..+.++|+|||+|++
T Consensus       292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~  334 (393)
T COG1092         292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVT  334 (393)
T ss_pred             cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            999954211     01    1 566899999999999999974

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=9.9e-05  Score=62.39  Aligned_cols=72  Identities=18%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             chHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCC-c
Q 027441          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSS-S  189 (223)
Q Consensus       127 ~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~-s  189 (223)
                      +..+.|.+.+... ++..|||||+|.|.++..|+   .+|+++++.+             .++.++.+|+-..+++.- .
T Consensus        17 ~v~~kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~   95 (259)
T COG0030          17 NVIDKIVEAANIS-PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ   95 (259)
T ss_pred             HHHHHHHHhcCCC-CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence            3445666666655 57899999999999999998   5799999996             467789999988887643 5


Q ss_pred             eeEEEEcccc
Q 027441          190 VDVAVFCLSL  199 (223)
Q Consensus       190 fD~Vi~~~~l  199 (223)
                      ++.|+++.-.
T Consensus        96 ~~~vVaNlPY  105 (259)
T COG0030          96 PYKVVANLPY  105 (259)
T ss_pred             CCEEEEcCCC
Confidence            7777766543

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.65  E-value=4.8e-05  Score=67.41  Aligned_cols=40  Identities=10%  Similarity=0.350  Sum_probs=33.6

Q ss_pred             CeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC
Q 027441          143 LVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN  182 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~  182 (223)
                      .+|||++||+|.++..|+   .+|+|+|+++               .++.++.+|+..
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            469999999999999887   5799999997               356788888755

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.64  E-value=0.00013  Score=63.71  Aligned_cols=61  Identities=10%  Similarity=0.100  Sum_probs=41.2

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------CC------CcEEE-ccCCCCC----CCCCceeEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------ND------PSVIA-CDMSNTP----LNSSSVDVA  193 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------~~------~~~~~-~d~~~lp----~~~~sfD~V  193 (223)
                      ...+|||||||+|.+...++     .+++|+|+++           .+      +.+.. .+...+.    .+++.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            45899999999997766665     3799999997           12      22322 2222221    246789999


Q ss_pred             EEcccccC
Q 027441          194 VFCLSLMG  201 (223)
Q Consensus       194 i~~~~l~~  201 (223)
                      +|.=-++-
T Consensus       194 vcNPPf~~  201 (321)
T PRK11727        194 LCNPPFHA  201 (321)
T ss_pred             EeCCCCcC
Confidence            99977663

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.63  E-value=4.3e-05  Score=62.67  Aligned_cols=91  Identities=20%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC------------------------CCCcEEEccCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------------------NDPSVIACDMS  181 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------------------~~~~~~~~d~~  181 (223)
                      .+++.+.. .++...+|||||.|......+     .+++|+++.+                        ..+.+..+|+.
T Consensus        33 ~il~~~~l-~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl  111 (205)
T PF08123_consen   33 KILDELNL-TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL  111 (205)
T ss_dssp             HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred             HHHHHhCC-CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence            44555543 378999999999999766555     4699999996                        23445566665


Q ss_pred             CCCCCC---CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441          182 NTPLNS---SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       182 ~lp~~~---~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv  222 (223)
                      +.++..   ...|+|++....-.-+....|.++..-||||-.++
T Consensus       112 ~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II  155 (205)
T PF08123_consen  112 DPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII  155 (205)
T ss_dssp             THHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred             ccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence            543211   23688888776321133366677778889988775

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.60  E-value=6.6e-05  Score=66.75  Aligned_cols=40  Identities=10%  Similarity=0.337  Sum_probs=33.8

Q ss_pred             CeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC
Q 027441          143 LVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN  182 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~  182 (223)
                      .+|||++||+|.++..++   .+|+|+|+++               .++.++.+|+..
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            579999999999999887   5799999997               356788888755

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.60  E-value=0.00014  Score=58.42  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=59.9

Q ss_pred             CCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-
Q 027441          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-  202 (223)
                      ...+.|+|+|+|.++...+   .+|++++..|               .++.++.+|+....|  ...|+|+|-+.=..+ 
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi  110 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI  110 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence            4789999999999888765   6899999987               456788999998888  346999877643322 


Q ss_pred             --CHHHHHHHHHHccCCCCEEE
Q 027441          203 --NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       203 --d~~~~l~e~~rvLkpgG~lv  222 (223)
                        ....++..+...||-+|.++
T Consensus       111 ~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         111 EEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             cccccHHHHHHHHHhhcCCccc
Confidence              23367777777888877664

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00033  Score=62.14  Aligned_cols=98  Identities=14%  Similarity=0.142  Sum_probs=66.2

Q ss_pred             CCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc-------CceEEEecCC---------------CCCcEEEccCCC
Q 027441          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS---------------NDPSVIACDMSN  182 (223)
Q Consensus       125 p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~---------------~~~~~~~~d~~~  182 (223)
                      .+.....+...+....++.+|||+.+++|.=+..++       ..|+++|+++               .++.++..|...
T Consensus       140 vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~  219 (355)
T COG0144         140 VQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARR  219 (355)
T ss_pred             EcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccc
Confidence            334444555555555688999999999998555554       2369999997               345677777765


Q ss_pred             CC---CCCCceeEEEE----cc--ccc-CCC----------------HHHHHHHHHHccCCCCEEE
Q 027441          183 TP---LNSSSVDVAVF----CL--SLM-GIN----------------FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       183 lp---~~~~sfD~Vi~----~~--~l~-~~d----------------~~~~l~e~~rvLkpgG~lv  222 (223)
                      ++   .....||.|+.    +.  ++. |-+                -..+|..+.++|||||.|+
T Consensus       220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV  285 (355)
T COG0144         220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV  285 (355)
T ss_pred             ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            53   22235999983    22  221 111                1189999999999999997

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.58  E-value=9.9e-05  Score=63.95  Aligned_cols=99  Identities=18%  Similarity=0.274  Sum_probs=60.5

Q ss_pred             CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc------------CceEEEecCC-----------------CCCc
Q 027441          124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------------NKVFSFDLVS-----------------NDPS  174 (223)
Q Consensus       124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------------~~v~gvDis~-----------------~~~~  174 (223)
                      -|...++.+...+... ++.+|||-+||+|.+...+.            ..++|+|+++                 ....
T Consensus        30 TP~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~  108 (311)
T PF02384_consen   30 TPREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN  108 (311)
T ss_dssp             --HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred             hHHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence            3555666666666443 66789999999999765442            3689999987                 1223


Q ss_pred             EEEccCCCCCCC--CCceeEEEEcccccCC---------C-------------HHHHHHHHHHccCCCCEEEc
Q 027441          175 VIACDMSNTPLN--SSSVDVAVFCLSLMGI---------N-------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       175 ~~~~d~~~lp~~--~~sfD~Vi~~~~l~~~---------d-------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +..+|....+..  ...||+|++.--+-..         +             ...++..+.+.|++||.+++
T Consensus       109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~  181 (311)
T PF02384_consen  109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI  181 (311)
T ss_dssp             EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence            566776444332  4789999976433210         0             11688999999999998753

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.53  E-value=9.9e-05  Score=62.19  Aligned_cols=83  Identities=18%  Similarity=0.158  Sum_probs=59.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC-CCCCC-ceeEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT-PLNSS-SVDVAV  194 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l-p~~~~-sfD~Vi  194 (223)
                      ...+||=||.|.|..+..+.     .+|+++|+++                   +++.++.+|...+ .-... .||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            57899999999999998886     4799999997                   3566777777432 11123 899999


Q ss_pred             EcccccCC-----CHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMGI-----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~-----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .-..-...     --..+++.+.++|+|||++++
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~  189 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL  189 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence            75543211     124899999999999999974

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.52  E-value=0.00031  Score=60.15  Aligned_cols=78  Identities=12%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCCCCCcE---------------EEccC--CCCCCCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSNDPSV---------------IACDM--SNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~~~~~---------------~~~d~--~~lp~~~~sfD~Vi~~~  197 (223)
                      ...+|||+|||+|..+-.+.      ..++++|.|+....+               .....  ...++  ...|+|++++
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~  110 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASY  110 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEeh
Confidence            45789999999997544333      468899998711110               00111  11222  2339999999


Q ss_pred             cccCC-C--HHHHHHHHHHccCCCCEEE
Q 027441          198 SLMGI-N--FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       198 ~l~~~-d--~~~~l~e~~rvLkpgG~lv  222 (223)
                      +|..+ +  ...++..+...+.+  .|+
T Consensus       111 ~L~EL~~~~r~~lv~~LW~~~~~--~LV  136 (274)
T PF09243_consen  111 VLNELPSAARAELVRSLWNKTAP--VLV  136 (274)
T ss_pred             hhhcCCchHHHHHHHHHHHhccC--cEE
Confidence            99988 3  34677777766665  444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.00097  Score=55.44  Aligned_cols=89  Identities=19%  Similarity=0.269  Sum_probs=63.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCCC--------CCcEE---EccCCCCC---CCCCceeE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN--------DPSVI---ACDMSNTP---LNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~--------~~~~~---~~d~~~lp---~~~~sfD~  192 (223)
                      .+++.+....++.++||||+.||.++..+.    .+|+|+|....        +..++   ..|+..+.   +. +..|+
T Consensus        69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~  147 (245)
T COG1189          69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDL  147 (245)
T ss_pred             HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCe
Confidence            455555555688999999999999999886    58999999862        22222   23444332   22 25688


Q ss_pred             EEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441          193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv  222 (223)
                      |+|--++  +....+|..+..+|+|+|.++
T Consensus       148 ~v~DvSF--ISL~~iLp~l~~l~~~~~~~v  175 (245)
T COG1189         148 IVIDVSF--ISLKLILPALLLLLKDGGDLV  175 (245)
T ss_pred             EEEEeeh--hhHHHHHHHHHHhcCCCceEE
Confidence            8887764  355688888999999998876

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.39  E-value=0.0004  Score=57.45  Aligned_cols=81  Identities=17%  Similarity=0.192  Sum_probs=62.1

Q ss_pred             CCeEEEECCcchHHHHHhc--------------CceEEEecCC----CCCcEEEccCCCCC--------CCCCceeEEEE
Q 027441          142 SLVIADFGCGDARLAKSVK--------------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVAVF  195 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la--------------~~v~gvDis~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~  195 (223)
                      -.+++|+.+.+|.|+..|.              ..+++||+-+    +.+..+++|+....        |.....|+|+|
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvc  121 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVC  121 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEe
Confidence            4689999999999999886              1389999987    45566788887643        55678999999


Q ss_pred             cccccCC---CH---------HHHHHHHHHccCCCCEEE
Q 027441          196 CLSLMGI---NF---------PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       196 ~~~l~~~---d~---------~~~l~e~~rvLkpgG~lv  222 (223)
                      -++-.-+   |.         -.+|.-..++|+|||.|+
T Consensus       122 DGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV  160 (294)
T KOG1099|consen  122 DGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV  160 (294)
T ss_pred             CCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence            8865422   22         267777889999999986

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.34  E-value=0.00027  Score=61.11  Aligned_cols=71  Identities=17%  Similarity=0.230  Sum_probs=52.2

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCCCC--CCC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP--LNS  187 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~lp--~~~  187 (223)
                      ++.+++.+... ++..+||.+||.|..+..++      .+|+|+|.++             .++.++.+|+.++.  ++.
T Consensus         8 l~Evl~~L~~~-pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~   86 (296)
T PRK00050          8 LDEVVDALAIK-PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE   86 (296)
T ss_pred             HHHHHHhhCCC-CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence            34666766654 67899999999999998876      3699999997             15677778876643  112


Q ss_pred             --CceeEEEEccccc
Q 027441          188 --SSVDVAVFCLSLM  200 (223)
Q Consensus       188 --~sfD~Vi~~~~l~  200 (223)
                        .+||.|++...+.
T Consensus        87 ~~~~vDgIl~DLGvS  101 (296)
T PRK00050         87 GLGKVDGILLDLGVS  101 (296)
T ss_pred             CCCccCEEEECCCcc
Confidence              2799999776554

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.0018  Score=54.93  Aligned_cols=88  Identities=19%  Similarity=0.342  Sum_probs=66.9

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCC-
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLN-  186 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~-  186 (223)
                      ..|+..|.-. |+.+||+-|.|+|.++.+++      ++++.+|+..                .++++..-|+....|. 
T Consensus        95 a~I~~~L~i~-PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   95 AMILSMLEIR-PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHhcCC-CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            3566666655 89999999999999888876      6899999985                5788889999776554 


Q ss_pred             -CCceeEEEEcccccCCCHHHHHHHHHHccCCCC-EEE
Q 027441          187 -SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG-EEQ  222 (223)
Q Consensus       187 -~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG-~lv  222 (223)
                       +..+|.|+.-.-    .|..++-.++.+|+.+| +|+
T Consensus       174 ks~~aDaVFLDlP----aPw~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  174 KSLKADAVFLDLP----APWEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             cccccceEEEcCC----ChhhhhhhhHHHhhhcCceEE
Confidence             577898886544    45566667777888766 443

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.25  E-value=0.0013  Score=54.10  Aligned_cols=98  Identities=11%  Similarity=0.205  Sum_probs=66.4

Q ss_pred             cCCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCC--
Q 027441          123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSN--  182 (223)
Q Consensus       123 ~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~--  182 (223)
                      .|.....+.+.+.+.  .++.+||.||-|-|.....+.    .+-+-++..+              .++.++.+.-++  
T Consensus        85 ~WEtpiMha~A~ai~--tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl  162 (271)
T KOG1709|consen   85 RWETPIMHALAEAIS--TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL  162 (271)
T ss_pred             hhhhHHHHHHHHHHh--hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhh
Confidence            354333333333333  378999999999999887776    2233456555              455555443333  


Q ss_pred             CCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441          183 TPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       183 lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                      ..++++.||-|+.-.-.++- |...+...+.|+|||+|.|-
T Consensus       163 ~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S  203 (271)
T KOG1709|consen  163 NTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS  203 (271)
T ss_pred             ccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence            13568899999977665555 88899999999999999874

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.001  Score=57.44  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=30.3

Q ss_pred             CceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441          188 SSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                      ++||+|+.++.+.-. +.-.+|..+..+|+|||+.+
T Consensus       258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi  293 (369)
T KOG2798|consen  258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI  293 (369)
T ss_pred             CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence            579999999776654 78899999999999999875

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.15  E-value=0.0011  Score=53.69  Aligned_cols=83  Identities=14%  Similarity=0.186  Sum_probs=54.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------------CCCcEEEccCCCCCCCCCceeE
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      .++.+|+|+=-|.|+|++.|+      +.|+++-..+                     .|+..+-.+...++ +....|+
T Consensus        47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~  125 (238)
T COG4798          47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL  125 (238)
T ss_pred             CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence            378999999999999999887      4566654443                     23333333333344 3344566


Q ss_pred             EEEccccc--CC------CHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLM--GI------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~--~~------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++.....|  |.      ....+..++++.|||||.++|
T Consensus       126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V  164 (238)
T COG4798         126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLV  164 (238)
T ss_pred             cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEE
Confidence            65433322  22      345899999999999999875

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.15  E-value=0.00022  Score=61.27  Aligned_cols=84  Identities=15%  Similarity=0.213  Sum_probs=58.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC-----------------CCCcEEEccCCCC-C-C-CCCceeEEEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNT-P-L-NSSSVDVAVF  195 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------------~~~~~~~~d~~~l-p-~-~~~sfD~Vi~  195 (223)
                      ..+.+|||+=|=||.++...+    .+|++||+|.                 ..+.++..|+... . + ..+.||+||+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            367899999999999988765    4799999996                 3556788887542 1 1 2468999995


Q ss_pred             ccc-cc--CC----CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLS-LM--GI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~-l~--~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      --- +.  ..    ++..++..+.++|+|||.|++
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~  236 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLT  236 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            421 11  11    566889999999999999874

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.14  E-value=0.0022  Score=51.64  Aligned_cols=95  Identities=14%  Similarity=0.087  Sum_probs=66.9

Q ss_pred             HHHHHHHHhc-cCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCC--CC
Q 027441          129 VNIIVKWLKD-HSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT--PL  185 (223)
Q Consensus       129 ~~~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~l--p~  185 (223)
                      .+.+.++|.. .-.+.++||+=+|+|.++....    ..++.+|.+.                .+..++..|+...  ..
T Consensus        30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~  109 (187)
T COG0742          30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL  109 (187)
T ss_pred             HHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence            3566777776 3578999999999999988775    5789999986                3455666676532  12


Q ss_pred             CC-CceeEEEEcccccCC--CHHHHHHH--HHHccCCCCEEEc
Q 027441          186 NS-SSVDVAVFCLSLMGI--NFPNYLQE--AQRVLKPRGEEQI  223 (223)
Q Consensus       186 ~~-~sfD~Vi~~~~l~~~--d~~~~l~e--~~rvLkpgG~lvi  223 (223)
                      .. ..||+|+.---++.-  +....+..  -...|+|+|.+++
T Consensus       110 ~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~  152 (187)
T COG0742         110 GTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVV  152 (187)
T ss_pred             CCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEE
Confidence            22 259999987777633  33444444  4577999999985

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.12  E-value=0.0024  Score=52.73  Aligned_cols=83  Identities=18%  Similarity=0.172  Sum_probs=59.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCCCC---CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~  197 (223)
                      .++.+||-+|+++|.....++      +.|+|++.|+             .|+--+..|+....   .--+.+|+|++--
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV  151 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDV  151 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecC
Confidence            378999999999999777665      4899999997             67777888886521   1234799999765


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      + +.-...-++..+...||+||.++|
T Consensus       152 a-Qp~Qa~I~~~Na~~fLk~gG~~~i  176 (229)
T PF01269_consen  152 A-QPDQARIAALNARHFLKPGGHLII  176 (229)
T ss_dssp             S-STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             C-ChHHHHHHHHHHHhhccCCcEEEE
Confidence            5 222445788888899999999875

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.12  E-value=0.00062  Score=60.79  Aligned_cols=78  Identities=18%  Similarity=0.112  Sum_probs=58.5

Q ss_pred             CeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC-CCCCceeEEEEccccc
Q 027441          143 LVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAVFCLSLM  200 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~  200 (223)
                      .+|||+.||+|..+..++      ..|+++|+++               .++.++..|+..+- .....||+|..-- + 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F-  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence            689999999999988876      3589999997               23456666765432 1135699998644 2 


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       -.+..++..+.+.+++||+|+|
T Consensus       124 -Gs~~~fld~al~~~~~~glL~v  145 (374)
T TIGR00308       124 -GTPAPFVDSAIQASAERGLLLV  145 (374)
T ss_pred             -CCcHHHHHHHHHhcccCCEEEE
Confidence             2445799999999999999975

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.10  E-value=0.0013  Score=55.89  Aligned_cols=70  Identities=19%  Similarity=0.200  Sum_probs=53.4

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCC---Cc
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNS---SS  189 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~---~s  189 (223)
                      .+.|.+.+... ++..|||||+|+|.++..|.   .+|+++|+++             .++.++.+|+..+....   ..
T Consensus        19 ~~~Iv~~~~~~-~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~   97 (262)
T PF00398_consen   19 ADKIVDALDLS-EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQ   97 (262)
T ss_dssp             HHHHHHHHTCG-TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSS
T ss_pred             HHHHHHhcCCC-CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCC
Confidence            35666766554 78999999999999999997   6899999996             46788899998877654   45


Q ss_pred             eeEEEEcccc
Q 027441          190 VDVAVFCLSL  199 (223)
Q Consensus       190 fD~Vi~~~~l  199 (223)
                      ...|+++.-.
T Consensus        98 ~~~vv~NlPy  107 (262)
T PF00398_consen   98 PLLVVGNLPY  107 (262)
T ss_dssp             EEEEEEEETG
T ss_pred             ceEEEEEecc
Confidence            5667665543

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.09  E-value=0.0014  Score=53.02  Aligned_cols=87  Identities=14%  Similarity=0.227  Sum_probs=56.0

Q ss_pred             HHHHHHhccC---CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCc
Q 027441          131 IIVKWLKDHS---PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       131 ~i~~~l~~~~---~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      .+.+++..++   .+.+|||+|+|+|..+...+    ..|++.|+.+              ..+.++..|+-.   .+..
T Consensus        66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~  142 (218)
T COG3897          66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPA  142 (218)
T ss_pred             HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcc
Confidence            3455555442   56899999999998776654    4677888876              233344444433   5678


Q ss_pred             eeEEEEcccccCC-CHHHHHHHHHHccCCCCEE
Q 027441          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEE  221 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~l  221 (223)
                      ||+|+...++..- --.+++. +.+.|+..|..
T Consensus       143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~  174 (218)
T COG3897         143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAA  174 (218)
T ss_pred             eeEEEeeceecCchHHHHHHH-HHHHHHhCCCE
Confidence            9999999887743 3345555 55555554443

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.08  E-value=0.0026  Score=54.39  Aligned_cols=81  Identities=17%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             CeEEEECCcchHHHHHhc-------CceEEEecCC-----------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441          143 LVIADFGCGDARLAKSVK-------NKVFSFDLVS-----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la-------~~v~gvDis~-----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      .+|+=||||+=.++..+.       ..|+++|+++                 ..+.|+.+|+...+..-..||+|+....
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal  201 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL  201 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence            599999999987665443       3588999997                 4567888898777655578999886554


Q ss_pred             ccCC--CHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGI--NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~--d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..-.  +...+|..+.+.++||+.+++
T Consensus       202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  202 VGMDAEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             -S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred             cccccchHHHHHHHHHhhCCCCcEEEE
Confidence            4322  778999999999999998874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=97.06  E-value=0.0016  Score=59.68  Aligned_cols=115  Identities=23%  Similarity=0.336  Sum_probs=81.5

Q ss_pred             hHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccC--CCCeEEEECCcchHHHHHhc---------CceEE
Q 027441           97 KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHS--PSLVIADFGCGDARLAKSVK---------NKVFS  165 (223)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~--~~~~ILDiGcG~G~~a~~la---------~~v~g  165 (223)
                      ...++.|.+++-.|+.|.+...           ..+++...+..  ...+|+=+|+|-|.+.....         -++++
T Consensus       332 ~~TYetFEkD~VKY~~Yq~Ai~-----------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklya  400 (649)
T KOG0822|consen  332 NQTYETFEKDPVKYDQYQQAIL-----------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYA  400 (649)
T ss_pred             hhhhhhhhccchHHHHHHHHHH-----------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEE
Confidence            3455777788888887764332           22333332221  14678999999999766543         25788


Q ss_pred             EecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC---CHHHHHHHHHHccCCCCEEE
Q 027441          166 FDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       166 vDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lv  222 (223)
                      ++-+|               ..+.++.+|+..++-+..+.|++++-..-.+-   --+.+|..+.+.|+|+|+.+
T Consensus       401 vEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  401 VEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             EecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence            88877               46788899999998556889999977655544   34699999999999999864

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.04  E-value=0.0015  Score=58.32  Aligned_cols=18  Identities=28%  Similarity=0.270  Sum_probs=16.8

Q ss_pred             CCCCceeEEEEcccccCC
Q 027441          185 LNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       185 ~~~~sfD~Vi~~~~l~~~  202 (223)
                      ||.++.++++++.++||+
T Consensus       158 fP~~Slh~~~Ss~slHWL  175 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWL  175 (386)
T ss_pred             cCCCceEEEEeeccceec
Confidence            678999999999999998

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.01  E-value=0.0016  Score=59.20  Aligned_cols=65  Identities=20%  Similarity=0.321  Sum_probs=50.8

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCC---CC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~---~~  188 (223)
                      ..+.+++... ++.++||+=||.|.++..|+   .+|+|+|+++               .|+.|..++++.+...   ..
T Consensus       283 ~~a~~~~~~~-~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~  361 (432)
T COG2265         283 ETALEWLELA-GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY  361 (432)
T ss_pred             HHHHHHHhhc-CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence            4455555554 66899999999999999999   5899999997               4678888988776533   34


Q ss_pred             ceeEEEE
Q 027441          189 SVDVAVF  195 (223)
Q Consensus       189 sfD~Vi~  195 (223)
                      .+|.|+.
T Consensus       362 ~~d~Vvv  368 (432)
T COG2265         362 KPDVVVV  368 (432)
T ss_pred             CCCEEEE
Confidence            7898884

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.01  E-value=0.0021  Score=54.56  Aligned_cols=56  Identities=25%  Similarity=0.331  Sum_probs=44.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      .+...||+||-|||.++..|.   ..|+++++.+                ....++.+|+...+++  .||.+|+..
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl  131 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL  131 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccC
Confidence            378999999999999999886   6899999997                2456788888665543  488888743

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.00074  Score=59.13  Aligned_cols=83  Identities=16%  Similarity=0.174  Sum_probs=51.2

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccC--CCCCCC-CCceeEEEEc
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDM--SNTPLN-SSSVDVAVFC  196 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~--~~lp~~-~~sfD~Vi~~  196 (223)
                      ...+|||+|.|+|..+.++.      ..++-++.|+               .....-..|+  ..++++ .+.|++|+..
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~  192 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL  192 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence            34679999999987555443      2344444444               1111222222  123333 3567877766


Q ss_pred             ccccCC----CHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .-|-+.    .....++.++.++.|||.|+|
T Consensus       193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi  223 (484)
T COG5459         193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVI  223 (484)
T ss_pred             hhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence            666555    334699999999999999986

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.97  E-value=0.0022  Score=56.50  Aligned_cols=62  Identities=24%  Similarity=0.243  Sum_probs=34.6

Q ss_pred             CCCeEEEECCcchHHHHHhc--------------C-------ceEEEecCC-------------------CCCcEE---E
Q 027441          141 PSLVIADFGCGDARLAKSVK--------------N-------KVFSFDLVS-------------------NDPSVI---A  177 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la--------------~-------~v~gvDis~-------------------~~~~~~---~  177 (223)
                      ...+|+|+||..|..+..+.              .       +|+--|+-.                   ....|+   -
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp   95 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP   95 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence            45799999999999766553              1       345556543                   012222   2


Q ss_pred             ccCCCCCCCCCceeEEEEcccccCC
Q 027441          178 CDMSNTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       178 ~d~~~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                      +.+-+--||+++.|+++++.++||+
T Consensus        96 gSFy~rLfP~~Svh~~~Ss~alHWL  120 (334)
T PF03492_consen   96 GSFYGRLFPSNSVHFGHSSYALHWL  120 (334)
T ss_dssp             S-TTS--S-TT-EEEEEEES-TTB-
T ss_pred             chhhhccCCCCceEEEEEechhhhc
Confidence            3334444789999999999999997

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.97  E-value=0.0026  Score=59.20  Aligned_cols=45  Identities=22%  Similarity=0.273  Sum_probs=29.8

Q ss_pred             CchHHHHHHHHhcc-C-----CCCeEEEECCcchHHHHHhc-------------CceEEEecCC
Q 027441          126 ELPVNIIVKWLKDH-S-----PSLVIADFGCGDARLAKSVK-------------NKVFSFDLVS  170 (223)
Q Consensus       126 ~~~~~~i~~~l~~~-~-----~~~~ILDiGcG~G~~a~~la-------------~~v~gvDis~  170 (223)
                      ...++.|++.+... .     ...+|||.|||+|.+...+.             ..++|+|+++
T Consensus        10 ~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~   73 (524)
T TIGR02987        10 PDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK   73 (524)
T ss_pred             HHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH
Confidence            33445555554322 1     34689999999999877654             2468899876

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.95  E-value=0.0027  Score=55.83  Aligned_cols=80  Identities=18%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||+=||-|.++..++    ..|+++|++|                ..+..+.+|+..++.....||.|++...-
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~  266 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK  266 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence            368999999999999999887    3499999998                23668899998877665889999987663


Q ss_pred             cCCCHHHHHHHHHHccCCCCEEE
Q 027441          200 MGINFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       200 ~~~d~~~~l~e~~rvLkpgG~lv  222 (223)
                         +-..++..+.+.|++||++.
T Consensus       267 ---~a~~fl~~A~~~~k~~g~iH  286 (341)
T COG2520         267 ---SAHEFLPLALELLKDGGIIH  286 (341)
T ss_pred             ---cchhhHHHHHHHhhcCcEEE
Confidence               23467778888888899874

>KOG2730 consensus Methylase [General function prediction only]

Probab=96.89  E-value=0.00076  Score=55.49  Aligned_cols=100  Identities=18%  Similarity=0.274  Sum_probs=66.1

Q ss_pred             HHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhcc----CCCCeEEEECCcchHHHHHhc---CceEEEecCC
Q 027441           98 EALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH----SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS  170 (223)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~----~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~  170 (223)
                      +...++.....+|..+.++..-..+.|.....+.+..+++..    .....|+|.-||.|..+..++   ..|+++|+++
T Consensus        47 ~l~kywk~ryrlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDP  126 (263)
T KOG2730|consen   47 ELFKYWKNRYRLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDP  126 (263)
T ss_pred             HHHHHHHHHHHHHHhhccceeecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccH
Confidence            344566666677777776655555667655555555555432    355789999999998877776   5799999997


Q ss_pred             ----------------CCCcEEEccCCC----CCCCCCceeEEEEcc
Q 027441          171 ----------------NDPSVIACDMSN----TPLNSSSVDVAVFCL  197 (223)
Q Consensus       171 ----------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~  197 (223)
                                      .++.|+++|+.+    +.+...-+|+|+.+.
T Consensus       127 ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen  127 VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP  173 (263)
T ss_pred             HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence                            467889998744    333333455555443

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.77  E-value=0.00074  Score=53.31  Aligned_cols=54  Identities=20%  Similarity=0.295  Sum_probs=36.2

Q ss_pred             eEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCC--CCCCc-eeEEEEcc
Q 027441          144 VIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSSS-VDVAVFCL  197 (223)
Q Consensus       144 ~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp--~~~~s-fD~Vi~~~  197 (223)
                      .|||+.||.|..+..++   .+|+++|+++                .++.++.+|..++.  +.... ||+|+++-
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            69999999999999998   5899999997                47889999985532  22222 89998763

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.76  E-value=0.0091  Score=50.74  Aligned_cols=93  Identities=16%  Similarity=0.208  Sum_probs=53.3

Q ss_pred             HHHHHHhccCCCCeEEEECCcchH------HHHHhc--CceEEEecCC-------------CC--CcEEEccCCCCC---
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDAR------LAKSVK--NKVFSFDLVS-------------ND--PSVIACDMSNTP---  184 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~------~a~~la--~~v~gvDis~-------------~~--~~~~~~d~~~lp---  184 (223)
                      ....++.....-...||||||-=.      .+....  .+|+-+|..+             .+  ..++.+|+.+..   
T Consensus        58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL  137 (267)
T PF04672_consen   58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL  137 (267)
T ss_dssp             HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH
T ss_pred             HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh
Confidence            334444443234679999999422      333333  6899999997             33  568899986621   


Q ss_pred             --------CCCCceeEEEEcccccCC----CHHHHHHHHHHccCCCCEEEc
Q 027441          185 --------LNSSSVDVAVFCLSLMGI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 --------~~~~sfD~Vi~~~~l~~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                              +.-..-=.|++..+|||+    ++..++..+...|.||.+|+|
T Consensus       138 ~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~i  188 (267)
T PF04672_consen  138 AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAI  188 (267)
T ss_dssp             CSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEE
T ss_pred             cCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEE
Confidence                    111333467788899998    577999999999999999986

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.76  E-value=0.0002  Score=51.98  Aligned_cols=78  Identities=17%  Similarity=0.125  Sum_probs=36.2

Q ss_pred             EEECCcchHHHHHhc--------CceEEEecCC---------------CCCcEEEccCCCC--CCCCCceeEEEEccccc
Q 027441          146 ADFGCGDARLAKSVK--------NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       146 LDiGcG~G~~a~~la--------~~v~gvDis~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l~  200 (223)
                      ||||+..|..+..++        .+++++|..+               .++.++.++....  .+...+||+|+.-..=.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~   80 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS   80 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence            689999998777765        1689999987               1344555555321  12257899998766311


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +-.....+..+.+.|+|||++++
T Consensus        81 ~~~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   81 YEAVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEE
Confidence            11345788889999999999985

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.64  E-value=0.0022  Score=55.18  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=58.3

Q ss_pred             cCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCC-C-CCCCceeEEEE
Q 027441          139 HSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNT-P-LNSSSVDVAVF  195 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~l-p-~~~~sfD~Vi~  195 (223)
                      ..++..|||+++|+|.=+..++      +.|+++|++.               .++..+..|...+ + .....||.|+.
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            3478899999999998666555      5899999997               3444555566544 1 22346999984


Q ss_pred             ----ccc--ccCC-C----------------HHHHHHHHHHcc----CCCCEEE
Q 027441          196 ----CLS--LMGI-N----------------FPNYLQEAQRVL----KPRGEEQ  222 (223)
Q Consensus       196 ----~~~--l~~~-d----------------~~~~l~e~~rvL----kpgG~lv  222 (223)
                          +..  +..- +                -..+|..+.+.|    +|||+|+
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv  216 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV  216 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence                332  2211 1                118899999999    9999987

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.63  E-value=0.011  Score=48.47  Aligned_cols=83  Identities=13%  Similarity=0.076  Sum_probs=48.4

Q ss_pred             CCCeEEEECCcchHHHHHhc---------CceEEEecCC--------------CCCcEEEccCCCCC----CC--CCcee
Q 027441          141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVS--------------NDPSVIACDMSNTP----LN--SSSVD  191 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~--------------~~~~~~~~d~~~lp----~~--~~sfD  191 (223)
                      +...|+++|.-.|.-+..++         ++|+|+|+..              .++.++.+|..+..    ..  ....+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            45889999999988665554         5899999942              57888999886532    11  11234


Q ss_pred             EEEEcccccCC--CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGI--NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~--d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -++...-.+|.  +....|.....+|.||++++|
T Consensus       112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV  145 (206)
T PF04989_consen  112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV  145 (206)
T ss_dssp             SEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred             ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence            34444444444  777888889999999999985

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.54  E-value=0.005  Score=59.40  Aligned_cols=83  Identities=8%  Similarity=0.042  Sum_probs=55.1

Q ss_pred             CCCeEEEECCcchHHHHHhc-----------------------------------------------CceEEEecCC---
Q 027441          141 PSLVIADFGCGDARLAKSVK-----------------------------------------------NKVFSFDLVS---  170 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----------------------------------------------~~v~gvDis~---  170 (223)
                      ++..++|-+||+|.+....+                                               .+++|+|+++   
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            56899999999999765432                                               1489999997   


Q ss_pred             -------------CCCcEEEccCCCCCCC--CCceeEEEEcccccC-C----CHHHHHH---HHHHccCCCCEEEc
Q 027441          171 -------------NDPSVIACDMSNTPLN--SSSVDVAVFCLSLMG-I----NFPNYLQ---EAQRVLKPRGEEQI  223 (223)
Q Consensus       171 -------------~~~~~~~~d~~~lp~~--~~sfD~Vi~~~~l~~-~----d~~~~l~---e~~rvLkpgG~lvi  223 (223)
                                   ..+.+..+|+.+++.+  .++||+|++.--+-. +    +...+..   +..+.+.+|+.++|
T Consensus       270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~l  345 (702)
T PRK11783        270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAAL  345 (702)
T ss_pred             HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence                         2467888999887654  357999998854421 1    2223333   33444448877654

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.52  E-value=0.0027  Score=56.30  Aligned_cols=51  Identities=20%  Similarity=0.421  Sum_probs=34.7

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN  182 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~  182 (223)
                      +.+++++... ++ .|||+=||.|.++..|+   .+|+|+|+++               .++.|+.+++++
T Consensus       187 ~~~~~~l~~~-~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  187 EQALEWLDLS-KG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             HHHHHHCTT--TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             HHHHHHhhcC-CC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            4455555543 33 79999999999999998   6899999996               567788766543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.28  E-value=0.0073  Score=46.32  Aligned_cols=31  Identities=19%  Similarity=0.503  Sum_probs=27.1

Q ss_pred             CCCCeEEEECCcchHHHHHhcC---------ceEEEecCC
Q 027441          140 SPSLVIADFGCGDARLAKSVKN---------KVFSFDLVS  170 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la~---------~v~gvDis~  170 (223)
                      .+...|+|+|||.|+++..|+.         +|+++|.++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~   63 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE   63 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence            4678999999999999988874         689999997

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.0021  Score=50.58  Aligned_cols=82  Identities=13%  Similarity=0.203  Sum_probs=50.5

Q ss_pred             CCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCc-------------EEEc-----cC--CCCCCCCCceeEEE
Q 027441          141 PSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPS-------------VIAC-----DM--SNTPLNSSSVDVAV  194 (223)
Q Consensus       141 ~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~-------------~~~~-----d~--~~lp~~~~sfD~Vi  194 (223)
                      .+..||++|.|- |..+.+++     ..|...|-+...+.             ...+     +.  ........+||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            457899999995 44444455     35666666541110             0011     11  11123356899999


Q ss_pred             EcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441          195 FCLSLMGI-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       195 ~~~~l~~~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                      |+..+-+- -...++..+.++|+|.|.-+
T Consensus       109 aADClFfdE~h~sLvdtIk~lL~p~g~Al  137 (201)
T KOG3201|consen  109 AADCLFFDEHHESLVDTIKSLLRPSGRAL  137 (201)
T ss_pred             eccchhHHHHHHHHHHHHHHHhCccccee
Confidence            98876433 34688999999999988754

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.07  E-value=0.0086  Score=49.09  Aligned_cols=53  Identities=21%  Similarity=0.169  Sum_probs=34.7

Q ss_pred             EEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccC-CCCCCCCCceeEEEEccc
Q 027441          145 IADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDM-SNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       145 ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~-~~lp~~~~sfD~Vi~~~~  198 (223)
                      |+||||..|++..+|.     .+++++|+++                ..+++..+|- ..++. ....|.|+.+++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecC
Confidence            6899999999999997     4799999997                4566777774 33432 223788876654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=95.92  E-value=0.012  Score=55.09  Aligned_cols=83  Identities=16%  Similarity=0.149  Sum_probs=56.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC----CCCcEEEccCCC----CC----CCCCceeEEEEccccc-
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSN----TP----LNSSSVDVAVFCLSLM-  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----~~~~~~~~d~~~----lp----~~~~sfD~Vi~~~~l~-  200 (223)
                      .+...|||+||.+|.|.....      +-|+|+||.|    +++..++.|+..    .+    +.....|+|+.-++-. 
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnV  122 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNV  122 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCcc
Confidence            477899999999999988765      4689999998    455555666532    22    2234568888665533 


Q ss_pred             ---CC-CH-------HHHHHHHHHccCCCCEEE
Q 027441          201 ---GI-NF-------PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       201 ---~~-d~-------~~~l~e~~rvLkpgG~lv  222 (223)
                         |+ |.       -.+|.-+...|+.||.|+
T Consensus       123 g~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv  155 (780)
T KOG1098|consen  123 GGNWVQDAFQQACLTLRALKLATEFLAKGGTFV  155 (780)
T ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence               22 11       155666677788888865

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.79  E-value=0.02  Score=48.18  Aligned_cols=82  Identities=12%  Similarity=0.122  Sum_probs=53.2

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------------CCCcEE---EccCCCCCCCCCc-eeE
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------------NDPSVI---ACDMSNTPLNSSS-VDV  192 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------------~~~~~~---~~d~~~lp~~~~s-fD~  192 (223)
                      ....||++|+|+|..+...+    ..|+-.|+..                    ..+.+.   .++.....+.... ||+
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            35679999999996555444    4666666654                    011111   1222221111223 999


Q ss_pred             EEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441          193 AVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       193 Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                      |+++.++.+. .++.++..+...|..+|.++
T Consensus       166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~  196 (248)
T KOG2793|consen  166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIF  196 (248)
T ss_pred             EEEeeeeecCCcchhHHHHHHHHHhcCCeEE
Confidence            9999999887 78888888888898888544

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.61  E-value=0.017  Score=47.19  Aligned_cols=29  Identities=21%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecC
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLV  169 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis  169 (223)
                      ....+.|||||.|.+...|+     ..+.|++|-
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR   93 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIR   93 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhh
Confidence            34679999999999998887     246677664

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=95.60  E-value=0.016  Score=49.48  Aligned_cols=83  Identities=16%  Similarity=0.128  Sum_probs=48.0

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCCCCCcEEEccC----------------------C---CCCC-CCC-
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSVIACDM----------------------S---NTPL-NSS-  188 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~~~~~~~d~----------------------~---~lp~-~~~-  188 (223)
                      ..+.+|||+|||+|.......    ..++..|++..-+..+..+.                      .   +.-+ ..+ 
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~  194 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER  194 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence            357899999999998666554    35666777752221111110                      0   0000 012 


Q ss_pred             -ceeEEEEcccccCCCHH-HH-HHHHHHccCCCCEEE
Q 027441          189 -SVDVAVFCLSLMGINFP-NY-LQEAQRVLKPRGEEQ  222 (223)
Q Consensus       189 -sfD~Vi~~~~l~~~d~~-~~-l~e~~rvLkpgG~lv  222 (223)
                       .||+|.++..+.-.+.. .+ +......++++|.++
T Consensus       195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~  231 (282)
T KOG2920|consen  195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFY  231 (282)
T ss_pred             cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhh
Confidence             67777777777666333 33 556666778888765

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.57  E-value=0.041  Score=45.36  Aligned_cols=65  Identities=22%  Similarity=0.209  Sum_probs=43.8

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCC-C
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLN-S  187 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~-~  187 (223)
                      ..+.+++.   .+..++||||-.|++..+|.     ..+++.|+++                ..++...+|.. .++. +
T Consensus         8 ~~va~~V~---~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl-~~l~~~   83 (226)
T COG2384           8 TTVANLVK---QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL-AVLELE   83 (226)
T ss_pred             HHHHHHHH---cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc-cccCcc
Confidence            45556665   34559999999999999987     4688999997                22333344441 2333 4


Q ss_pred             CceeEEEEccc
Q 027441          188 SSVDVAVFCLS  198 (223)
Q Consensus       188 ~sfD~Vi~~~~  198 (223)
                      +.+|+|+.+++
T Consensus        84 d~~d~ivIAGM   94 (226)
T COG2384          84 DEIDVIVIAGM   94 (226)
T ss_pred             CCcCEEEEeCC
Confidence            47899887665

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.55  E-value=0.037  Score=49.71  Aligned_cols=82  Identities=17%  Similarity=0.151  Sum_probs=57.0

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC---CCCCceeEEE-
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP---LNSSSVDVAV-  194 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp---~~~~sfD~Vi-  194 (223)
                      .++.+|||+.|.+|.=+.+++      +.|+|.|.+.               .+..++..|...+|   ++. +||-|+ 
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL  318 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL  318 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence            378999999999998665555      5789999876               23334455665554   444 899998 


Q ss_pred             ---Ecc--ccc------CC----C-------HHHHHHHHHHccCCCCEEE
Q 027441          195 ---FCL--SLM------GI----N-------FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       195 ---~~~--~l~------~~----d-------~~~~l~e~~rvLkpgG~lv  222 (223)
                         |++  ++.      +.    +       -..+|..+..++++||+|+
T Consensus       319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLV  368 (460)
T KOG1122|consen  319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLV  368 (460)
T ss_pred             cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEE
Confidence               444  221      00    1       1178888999999999997

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.47  E-value=0.033  Score=46.81  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=46.2

Q ss_pred             HHHHHHHhcc-CCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      +.+.+.+-.. ++..+|+|||||.-.++..+.     ..++|+||+.              ....+...|+..-+ +...
T Consensus        93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~  171 (251)
T PF07091_consen   93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEP  171 (251)
T ss_dssp             HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSE
T ss_pred             HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCC
Confidence            4455554433 457899999999999988776     3789999997              35556677776554 3466


Q ss_pred             eeEEEEcccccCC
Q 027441          190 VDVAVFCLSLMGI  202 (223)
Q Consensus       190 fD~Vi~~~~l~~~  202 (223)
                      .|+++..=+++-+
T Consensus       172 ~DlaLllK~lp~l  184 (251)
T PF07091_consen  172 ADLALLLKTLPCL  184 (251)
T ss_dssp             ESEEEEET-HHHH
T ss_pred             cchhhHHHHHHHH
Confidence            8888877666544

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=95.39  E-value=0.014  Score=53.46  Aligned_cols=43  Identities=12%  Similarity=0.378  Sum_probs=35.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN  182 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~  182 (223)
                      +.+..+||+-||||.++..++   .+|+|+++++               .|..|+++-+++
T Consensus       382 ~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED  442 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence            366899999999999999998   6899999997               466788875544

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=95.39  E-value=0.013  Score=44.50  Aligned_cols=27  Identities=19%  Similarity=0.348  Sum_probs=23.7

Q ss_pred             eEEEECCcchHHHHHhc-----CceEEEecCC
Q 027441          144 VIADFGCGDARLAKSVK-----NKVFSFDLVS  170 (223)
Q Consensus       144 ~ILDiGcG~G~~a~~la-----~~v~gvDis~  170 (223)
                      +|||||||.|.++..++     .+|+++|+++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~   32 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP   32 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence            48999999999988876     3699999997

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.26  E-value=0.0083  Score=47.11  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=32.0

Q ss_pred             CCceeEEEEcccccCC------CH------HHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCLSLMGI------NF------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~------d~------~~~l~e~~rvLkpgG~lvi  223 (223)
                      .++||.+.|..+++|+      ||      ...+.++.++|||||.|++
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l  109 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFL  109 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEE
Confidence            5789999999999987      22      3889999999999999985

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.03  E-value=0.23  Score=40.62  Aligned_cols=83  Identities=14%  Similarity=0.107  Sum_probs=56.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCCC---CCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~~  198 (223)
                      .++.+||=+|+.+|.....++     +.++|++.|+             .|+--+..|+....   +--...|+|+.--+
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVA  154 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVA  154 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEecC
Confidence            478999999999998777665     5799999998             45555666664321   11245788775433


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       .--...-+...+...|++||.++|
T Consensus       155 -Qp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         155 -QPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             -CchHHHHHHHHHHHhcccCCeEEE
Confidence             111234677788889999996654

>PTZ00357 methyltransferase; Provisional

Probab=94.92  E-value=0.1  Score=49.93  Aligned_cols=125  Identities=17%  Similarity=0.202  Sum_probs=80.7

Q ss_pred             chHHHHHhhcChHHHHHHHHhHHhhhccCCCchHH--------HH------HHHHhccC---CCCeEEEECCcchHHHHH
Q 027441           96 GKEALDYFNENPALFDMYHSGYQEQMSHWPELPVN--------II------VKWLKDHS---PSLVIADFGCGDARLAKS  158 (223)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~i------~~~l~~~~---~~~~ILDiGcG~G~~a~~  158 (223)
                      +...++.|..++-.|+.|+......+..|......        .+      ++......   ....|+=+|+|-|.+...
T Consensus       638 ES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdr  717 (1072)
T PTZ00357        638 SSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDE  717 (1072)
T ss_pred             chhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHH
Confidence            44566888899999999987776666444210000        00      01111111   124699999999997554


Q ss_pred             hc---------CceEEEecCC----------------C--------CCcEEEccCCCCCCC-----------CCceeEEE
Q 027441          159 VK---------NKVFSFDLVS----------------N--------DPSVIACDMSNTPLN-----------SSSVDVAV  194 (223)
Q Consensus       159 la---------~~v~gvDis~----------------~--------~~~~~~~d~~~lp~~-----------~~sfD~Vi  194 (223)
                      ..         -+|++|+-++                .        .+.++..|+..+..+           -+.+|+||
T Consensus       718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVV  797 (1072)
T PTZ00357        718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIV  797 (1072)
T ss_pred             HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceeh
Confidence            32         2688998884                1        257788899876432           13699999


Q ss_pred             EcccccCC---CHHHHHHHHHHccCC----CCE
Q 027441          195 FCLSLMGI---NFPNYLQEAQRVLKP----RGE  220 (223)
Q Consensus       195 ~~~~l~~~---d~~~~l~e~~rvLkp----gG~  220 (223)
                      +-..-.+-   --|.+|..+.+.||+    +|+
T Consensus       798 SELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        798 SELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             HhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence            86655544   346999999999987    776

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=94.90  E-value=0.065  Score=47.53  Aligned_cols=83  Identities=16%  Similarity=0.152  Sum_probs=58.1

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------------CCCcEEEccCCCC-CCCCCceeE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSNT-PLNSSSVDV  192 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------------~~~~~~~~d~~~l-p~~~~sfD~  192 (223)
                      ...+||-+|.|.|..++.+.     .+++-+|+.|                      +++.++..|+.++ .-..+.||+
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~  368 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV  368 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence            45789999999999888876     5789999997                      3344555555442 122357999


Q ss_pred             EEEccc------ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLS------LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~------l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||...-      +.-+--..+..-+.|.|+++|++++
T Consensus       369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv  405 (508)
T COG4262         369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV  405 (508)
T ss_pred             EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence            986542      1111123788889999999999985

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.77  E-value=0.092  Score=38.50  Aligned_cols=30  Identities=20%  Similarity=0.344  Sum_probs=23.1

Q ss_pred             CCCeEEEECCcchHHHHHhcC---ceEEEecCC
Q 027441          141 PSLVIADFGCGDARLAKSVKN---KVFSFDLVS  170 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la~---~v~gvDis~  170 (223)
                      +.....|||||+|.+.-.|..   .-.|+|+-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence            356799999999998888873   456777654

; GO: 0008168 methyltransferase activity

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.72  E-value=0.064  Score=44.19  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=22.7

Q ss_pred             CCCeEEEECCcchHHHHHhc-------CceEEEecCC
Q 027441          141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS  170 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~  170 (223)
                      ....++|-.||.|++...+.       ..|+|.|+++
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~   87 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDE   87 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-H
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCH
Confidence            34689999999999877765       4799999995

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.54  E-value=0.13  Score=45.22  Aligned_cols=77  Identities=17%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             CCCCeEEEECCcchH--HHHHhc----CceEEEecCCCC---------CcEEEcc-CCCCCCCCCceeEEEEcccccCCC
Q 027441          140 SPSLVIADFGCGDAR--LAKSVK----NKVFSFDLVSND---------PSVIACD-MSNTPLNSSSVDVAVFCLSLMGIN  203 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~--~a~~la----~~v~gvDis~~~---------~~~~~~d-~~~lp~~~~sfD~Vi~~~~l~~~d  203 (223)
                      .|+..|+=+|+| |.  .+..++    .+|+++|.++..         ..++... .....--.+.||+|+..-.     
T Consensus       165 ~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-----  238 (339)
T COG1064         165 KPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-----  238 (339)
T ss_pred             CCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence            478999999998 54  444444    799999999832         1222222 1111111123999997766     


Q ss_pred             HHHHHHHHHHccCCCCEEEc
Q 027441          204 FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~lvi  223 (223)
                       +..+....+.|++||.+++
T Consensus       239 -~~~~~~~l~~l~~~G~~v~  257 (339)
T COG1064         239 -PATLEPSLKALRRGGTLVL  257 (339)
T ss_pred             -hhhHHHHHHHHhcCCEEEE
Confidence             5577788889999999874

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.39  E-value=0.073  Score=47.48  Aligned_cols=83  Identities=11%  Similarity=0.135  Sum_probs=56.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc--C------------------------------------------ceEEEecCC-----
Q 027441          140 SPSLVIADFGCGDARLAKSVK--N------------------------------------------KVFSFDLVS-----  170 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la--~------------------------------------------~v~gvDis~-----  170 (223)
                      .++..++|--||+|.++...+  .                                          .++|+|+++     
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            455789999999999877654  1                                          267999997     


Q ss_pred             -----------CCCcEEEccCCCCCCCCCceeEEEEccccc-CC-C-------HHHHHHHHHHccCCCCEEE
Q 027441          171 -----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM-GI-N-------FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       171 -----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~-~~-d-------~~~~l~e~~rvLkpgG~lv  222 (223)
                                 ..+.|.++|+..++-+.+.+|+|||+--.- -+ +       ...+...+.+++.--+.++
T Consensus       270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v  341 (381)
T COG0116         270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYV  341 (381)
T ss_pred             HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEE
Confidence                       457899999998875447899999885432 11 1       1244445556655544444

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=94.29  E-value=0.084  Score=45.88  Aligned_cols=70  Identities=17%  Similarity=0.171  Sum_probs=51.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC-----C
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP-----L  185 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp-----~  185 (223)
                      +.+++.|... ++..++|.=||.|..+..+.     .+|+|+|.++              .++.++.++..+++     .
T Consensus        10 ~Evl~~L~~~-~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~   88 (305)
T TIGR00006        10 DEVVEGLNIK-PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL   88 (305)
T ss_pred             HHHHHhcCcC-CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence            4566666544 67899999999999888776     4799999987              25667777765542     2


Q ss_pred             CCCceeEEEEccccc
Q 027441          186 NSSSVDVAVFCLSLM  200 (223)
Q Consensus       186 ~~~sfD~Vi~~~~l~  200 (223)
                      ...++|.|++...+.
T Consensus        89 ~~~~vDgIl~DLGvS  103 (305)
T TIGR00006        89 LVTKIDGILVDLGVS  103 (305)
T ss_pred             CCCcccEEEEeccCC
Confidence            335789888776553

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=93.76  E-value=0.048  Score=41.95  Aligned_cols=62  Identities=31%  Similarity=0.461  Sum_probs=39.5

Q ss_pred             ceEEEecCC----------------CCCcEEEccCCCCC--CCCCceeEEEEccccc-CCC------HH---HHHHHHHH
Q 027441          162 KVFSFDLVS----------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSLM-GIN------FP---NYLQEAQR  213 (223)
Q Consensus       162 ~v~gvDis~----------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~l~-~~d------~~---~~l~e~~r  213 (223)
                      +|+|+||-+                .++.++...-+++.  ++.+.+|+|+++...- +-|      +.   .++..+.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~   80 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE   80 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence            588899885                34666665555543  2235899999887653 112      22   88999999


Q ss_pred             ccCCCCEEEc
Q 027441          214 VLKPRGEEQI  223 (223)
Q Consensus       214 vLkpgG~lvi  223 (223)
                      +|+|||+++|
T Consensus        81 lL~~gG~i~i   90 (140)
T PF06962_consen   81 LLKPGGIITI   90 (140)
T ss_dssp             HEEEEEEEEE
T ss_pred             hhccCCEEEE
Confidence            9999999975

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.73  E-value=0.091  Score=46.45  Aligned_cols=78  Identities=23%  Similarity=0.336  Sum_probs=50.9

Q ss_pred             CCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCcEEEc----cCCCCC-----------CCC-CceeEEEEccc
Q 027441          141 PSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSVIAC----DMSNTP-----------LNS-SSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~~~~~----d~~~lp-----------~~~-~sfD~Vi~~~~  198 (223)
                      ++.+|+=+|||+ |.++..++     ..|+++|.++.+..+...    +....+           ... ..||+|+=+-.
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            445899999998 55554444     589999999844332211    111111           111 25899985544


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                           -+.++..+.++++|||.+++
T Consensus       248 -----~~~~~~~ai~~~r~gG~v~~  267 (350)
T COG1063         248 -----SPPALDQALEALRPGGTVVV  267 (350)
T ss_pred             -----CHHHHHHHHHHhcCCCEEEE
Confidence                 26799999999999999874

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.46  E-value=0.22  Score=38.84  Aligned_cols=69  Identities=19%  Similarity=0.251  Sum_probs=46.4

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      .++.++... +.++.+|+|+|.|.+....+    ..-+|+++++                ....|..-|+-...+.+-.+
T Consensus        63 nVLSll~~n-~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~  141 (199)
T KOG4058|consen   63 NVLSLLRGN-PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRN  141 (199)
T ss_pred             HHHHHccCC-CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccce
Confidence            344444443 66899999999999766655    2457889887                34556677776666666666


Q ss_pred             eEEEEccccc
Q 027441          191 DVAVFCLSLM  200 (223)
Q Consensus       191 D~Vi~~~~l~  200 (223)
                      -+|+-..+++
T Consensus       142 vviFgaes~m  151 (199)
T KOG4058|consen  142 VVIFGAESVM  151 (199)
T ss_pred             EEEeehHHHH
Confidence            6666555544

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=91.83  E-value=0.79  Score=38.63  Aligned_cols=83  Identities=18%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCCCC---CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~  197 (223)
                      .|+.+||=||++.|.....+.      .-|++++.|+             .|+.-++-|+....   +.-.-+|+|++..
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv  234 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV  234 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccC
Confidence            488999999999998655554      4689999997             45555566654321   1223567776543


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      . +-.....+.-.+...|++||.|+|
T Consensus       235 a-qpdq~RivaLNA~~FLk~gGhfvi  259 (317)
T KOG1596|consen  235 A-QPDQARIVALNAQYFLKNGGHFVI  259 (317)
T ss_pred             C-CchhhhhhhhhhhhhhccCCeEEE
Confidence            3 111112445567788999999875

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=90.81  E-value=1.9  Score=36.92  Aligned_cols=78  Identities=17%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCC--------CcEEEccCCCC------CCCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSND--------PSVIACDMSNT------PLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~--------~~~~~~d~~~l------p~~~~sfD~Vi~~~~l~  200 (223)
                      .++.+||..|||. |..+..++    .+|++++.++..        +..+.......      ......+|+|+.+... 
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~-  242 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGT-  242 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCC-
Confidence            3667888888763 56655555    368888776522        12221111111      1234568998865431 


Q ss_pred             CCCHHHHHHHHHHccCCCCEEE
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lv  222 (223)
                          ...+.++.+.|+++|.++
T Consensus       243 ----~~~~~~~~~~l~~~G~~v  260 (338)
T cd08254         243 ----QPTFEDAQKAVKPGGRIV  260 (338)
T ss_pred             ----HHHHHHHHHHhhcCCEEE
Confidence                568889999999999986

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=90.67  E-value=1.2  Score=39.53  Aligned_cols=84  Identities=23%  Similarity=0.394  Sum_probs=52.1

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCC---------CcEEEccCCC-C-----CC-CCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSND---------PSVIACDMSN-T-----PL-NSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~---------~~~~~~d~~~-l-----p~-~~~sfD~Vi~~~  197 (223)
                      .++.+||.+|||. |..+..++    . .|+++|.++..         ..++...-.+ +     .+ ....+|+|+.+.
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v  262 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAV  262 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence            3678999999987 76666665    2 58888877521         1111111110 0     11 223689998764


Q ss_pred             ccc-----------C-----CCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLM-----------G-----INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~-----------~-----~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+           |     .+....+.++.++|+|+|.+++
T Consensus       263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~  304 (386)
T cd08283         263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSI  304 (386)
T ss_pred             CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEE
Confidence            321           1     1456789999999999999874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=90.67  E-value=1.2  Score=41.63  Aligned_cols=82  Identities=21%  Similarity=0.260  Sum_probs=53.1

Q ss_pred             CCCeEEEECCcchHH-HHHhc----CceEEEecCCC--------CCcEEEccCCC-----------C--C--------CC
Q 027441          141 PSLVIADFGCGDARL-AKSVK----NKVFSFDLVSN--------DPSVIACDMSN-----------T--P--------LN  186 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~-a~~la----~~v~gvDis~~--------~~~~~~~d~~~-----------l--p--------~~  186 (223)
                      ++.+|+=+|||.-.+ +...+    ..|+++|.++.        ...++..|...           +  .        +.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~  243 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA  243 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence            679999999998553 33333    57999999972        22333222211           0  0        01


Q ss_pred             C--CceeEEEEcccccCCCHHHH-HHHHHHccCCCCEEE
Q 027441          187 S--SSVDVAVFCLSLMGINFPNY-LQEAQRVLKPRGEEQ  222 (223)
Q Consensus       187 ~--~sfD~Vi~~~~l~~~d~~~~-l~e~~rvLkpgG~lv  222 (223)
                      +  ..+|+||.+.....-..+.+ .+++.+.+||||.++
T Consensus       244 ~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIV  282 (509)
T PRK09424        244 EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIV  282 (509)
T ss_pred             hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEE
Confidence            1  35899998877544322344 599999999999986

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=89.24  E-value=1.6  Score=37.90  Aligned_cols=73  Identities=10%  Similarity=0.049  Sum_probs=33.2

Q ss_pred             HHHHHHHhccC----CCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------------CCCcEEEccCC--
Q 027441          130 NIIVKWLKDHS----PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------------NDPSVIACDMS--  181 (223)
Q Consensus       130 ~~i~~~l~~~~----~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------------~~~~~~~~d~~--  181 (223)
                      ..|.+.|....    ...++||||||...+=..|.     =+++|+|+++                 ..|.+....-.  
T Consensus        87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~  166 (299)
T PF05971_consen   87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDN  166 (299)
T ss_dssp             HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-S
T ss_pred             HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccc
Confidence            34555554432    24689999999875333332     3789999997                 23444332211  


Q ss_pred             ---CCCCCCCceeEEEEcccccCC
Q 027441          182 ---NTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       182 ---~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                         .+...++.||+++|.--++-.
T Consensus       167 i~~~i~~~~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  167 IFDGIIQPNERFDFTMCNPPFYSS  190 (299)
T ss_dssp             STTTSTT--S-EEEEEE-----SS
T ss_pred             cchhhhcccceeeEEecCCccccC
Confidence               122234689999998777644

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=89.23  E-value=0.86  Score=39.70  Aligned_cols=78  Identities=13%  Similarity=0.118  Sum_probs=45.8

Q ss_pred             CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCC-----CCCCCCCceeEEEEcccccCC
Q 027441          141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMS-----NTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~-----~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                      ++.+||=+|||. |.++..++    . +|+++|.++.+..+       ...|..     .+....+.||+|+-+..    
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G----  244 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG----  244 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence            567888889864 33444443    2 68888887622111       011111     11111234888886544    


Q ss_pred             CHHHHHHHHHHccCCCCEEEc
Q 027441          203 NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       -+..+..+.++|++||.+++
T Consensus       245 -~~~~~~~~~~~l~~~G~iv~  264 (343)
T PRK09880        245 -HPSSINTCLEVTRAKGVMVQ  264 (343)
T ss_pred             -CHHHHHHHHHHhhcCCEEEE
Confidence             14577888999999999874

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=88.83  E-value=0.3  Score=40.82  Aligned_cols=71  Identities=18%  Similarity=0.059  Sum_probs=39.8

Q ss_pred             HHHHHHhccC-CCCeEEEECCcchHHHHHhc---CceEEEecCC------------------------CCCcEEEccCCC
Q 027441          131 IIVKWLKDHS-PSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACDMSN  182 (223)
Q Consensus       131 ~i~~~l~~~~-~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------------------~~~~~~~~d~~~  182 (223)
                      .|++.....+ ...+|||.-+|-|.-+..++   .+|++++-|+                        .++.++.+|...
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~  143 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE  143 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence            4455443321 22489999999999887776   6899999997                        245677888765


Q ss_pred             -CCCCCCceeEEEEcccccC
Q 027441          183 -TPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       183 -lp~~~~sfD~Vi~~~~l~~  201 (223)
                       ++.++.+||+|.+--++.+
T Consensus       144 ~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  144 YLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             HCCCHSS--SEEEE--S---
T ss_pred             HHhhcCCCCCEEEECCCCCC
Confidence             5666899999998877765

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=88.71  E-value=0.56  Score=41.42  Aligned_cols=97  Identities=21%  Similarity=0.142  Sum_probs=68.9

Q ss_pred             chHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC------------------------CCCcEEEcc
Q 027441          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACD  179 (223)
Q Consensus       127 ~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------------------~~~~~~~~d  179 (223)
                      ..+..++..++...++..|+|==.|||.+....+   +.|+|.||.-                        ...+++.+|
T Consensus       194 AeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D  273 (421)
T KOG2671|consen  194 AELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD  273 (421)
T ss_pred             hhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence            3345777777777799999999999998766555   6899999884                        134567888


Q ss_pred             CCCCCCC-CCceeEEEEcccc------------------------cCCC----------HHHHHHHHHHccCCCCEEEc
Q 027441          180 MSNTPLN-SSSVDVAVFCLSL------------------------MGIN----------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       180 ~~~lp~~-~~sfD~Vi~~~~l------------------------~~~d----------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+.|+- ...||.|+|---.                        .|.+          ....|.=..|+|..||.|++
T Consensus       274 ~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~  352 (421)
T KOG2671|consen  274 FSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF  352 (421)
T ss_pred             ccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence            8887764 5689999986211                        1221          11556667789999999874

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=88.62  E-value=0.69  Score=40.00  Aligned_cols=84  Identities=15%  Similarity=0.073  Sum_probs=55.4

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC--CCCCCceeEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT--PLNSSSVDVA  193 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l--p~~~~sfD~V  193 (223)
                      +....+|=||-|.|.+.+...     ..+.-+|+..                   ..+.+..+|...+  ....+.||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            356889999999999887665     2344444443                   4555666665332  1336889999


Q ss_pred             EEcccccCCC-----HHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGIN-----FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~d-----~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.--+=.-.+     ...++..+.+.||+||++++
T Consensus       200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~  234 (337)
T KOG1562|consen  200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT  234 (337)
T ss_pred             EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence            8543311111     23788889999999999874

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=88.23  E-value=0.39  Score=41.79  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=24.7

Q ss_pred             ceeEEEEcccccCC---C---HHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI---N---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~---d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..|+|...+.+.-+   .   -..+|..+...++||-+|+|
T Consensus       200 ~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLV  240 (315)
T PF11312_consen  200 SPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLV  240 (315)
T ss_pred             hhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence            45666655555421   2   23899999999999999876

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=87.74  E-value=4.6  Score=37.50  Aligned_cols=98  Identities=18%  Similarity=0.224  Sum_probs=60.0

Q ss_pred             CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---------CceEEEecCC------------CCC----cEEEc
Q 027441          124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS------------NDP----SVIAC  178 (223)
Q Consensus       124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~------------~~~----~~~~~  178 (223)
                      -|......|...+.. .+..+|+|-.||+|.+.....         ..++|.++.+            ..+    ....+
T Consensus       170 TP~~v~~liv~~l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~  248 (489)
T COG0286         170 TPREVSELIVELLDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG  248 (489)
T ss_pred             ChHHHHHHHHHHcCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence            455666666666665 356799999999998544332         1267888776            112    22333


Q ss_pred             cCCCCC-C----CCCceeEEEEccccc---CC-----------------------CHHHHHHHHHHccCCCCEEE
Q 027441          179 DMSNTP-L----NSSSVDVAVFCLSLM---GI-----------------------NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       179 d~~~lp-~----~~~sfD~Vi~~~~l~---~~-----------------------d~~~~l~e~~rvLkpgG~lv  222 (223)
                      |.-.-| .    ....||+|++.--+.   |.                       ....++.++.+.|+|||...
T Consensus       249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa  323 (489)
T COG0286         249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA  323 (489)
T ss_pred             ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence            332222 2    336799888764442   11                       01378999999999988543

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=87.72  E-value=0.52  Score=36.62  Aligned_cols=81  Identities=16%  Similarity=0.197  Sum_probs=42.3

Q ss_pred             CCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCC-CC---CCCCceeEEEEcccccCCCH
Q 027441          142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSN-TP---LNSSSVDVAVFCLSLMGINF  204 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~-lp---~~~~sfD~Vi~~~~l~~~d~  204 (223)
                      ..-|||+|=|.|..=-.|.     ..|+++|-.-        +.-.++.+|+.. +|   +-....-+|++-...++-+.
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~  108 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHADIGTGDKEK  108 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHH
T ss_pred             CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEeecCCCCcch
Confidence            4779999999998544443     5788887652        455688888743 22   22345566666555544322


Q ss_pred             H-----HHHHHHHHccCCCCEEE
Q 027441          205 P-----NYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       205 ~-----~~l~e~~rvLkpgG~lv  222 (223)
                      .     .+-.-+..+|.|||+++
T Consensus       109 d~a~a~~lspli~~~la~gGi~v  131 (160)
T PF12692_consen  109 DDATAAWLSPLIAPVLAPGGIMV  131 (160)
T ss_dssp             HHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             hHHHHHhhhHHHHHHhcCCcEEE
Confidence            2     22234568899999986

>PRK10742 putative methyltransferase; Provisional

Probab=87.59  E-value=0.97  Score=38.14  Aligned_cols=72  Identities=11%  Similarity=-0.023  Sum_probs=46.4

Q ss_pred             HHHHHHHhccCCCC--eEEEECCcchHHHHHhc---CceEEEecCC------------C------------CCcEEEccC
Q 027441          130 NIIVKWLKDHSPSL--VIADFGCGDARLAKSVK---NKVFSFDLVS------------N------------DPSVIACDM  180 (223)
Q Consensus       130 ~~i~~~l~~~~~~~--~ILDiGcG~G~~a~~la---~~v~gvDis~------------~------------~~~~~~~d~  180 (223)
                      +.|++-+... ++.  +|||+=+|.|..+..++   ..|+++|-++            .            ++.++.+|.
T Consensus        76 ~~l~kAvglk-~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         76 EAVAKAVGIK-GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             cHHHHHhCCC-CCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            3455555433 444  89999999999999887   5799999886            0            123334444


Q ss_pred             CCC-CCCCCceeEEEEcccccCC
Q 027441          181 SNT-PLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       181 ~~l-p~~~~sfD~Vi~~~~l~~~  202 (223)
                      ..+ .-...+||+|++-=.+.|-
T Consensus       155 ~~~L~~~~~~fDVVYlDPMfp~~  177 (250)
T PRK10742        155 LTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_pred             HHHHhhCCCCCcEEEECCCCCCC
Confidence            321 1112479999977666553

>PRK11524 putative methyltransferase; Provisional

Probab=87.55  E-value=0.52  Score=40.42  Aligned_cols=19  Identities=37%  Similarity=0.595  Sum_probs=17.1

Q ss_pred             HHHHHHHHHccCCCCEEEc
Q 027441          205 PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       205 ~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..++.++.|+|+|||.|+|
T Consensus        60 ~~~l~~~~rvLK~~G~i~i   78 (284)
T PRK11524         60 YEWIDECHRVLKKQGTMYI   78 (284)
T ss_pred             HHHHHHHHHHhCCCcEEEE
Confidence            4789999999999999985

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=86.92  E-value=5.3  Score=33.95  Aligned_cols=86  Identities=13%  Similarity=0.254  Sum_probs=53.7

Q ss_pred             HhccCCCCeEEEECCcchHHHHHhc---------CceEEEecCC--------------CCC--cEEEccCC----CCCCC
Q 027441          136 LKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS--------------NDP--SVIACDMS----NTPLN  186 (223)
Q Consensus       136 l~~~~~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~--------------~~~--~~~~~d~~----~lp~~  186 (223)
                      +.....+...+|+|+|+..=+..|.         .+.+.+|+|+              +.+  .-+++|.+    .+|  
T Consensus        73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--  150 (321)
T COG4301          73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--  150 (321)
T ss_pred             HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--
Confidence            3333357899999999987665553         3678899997              122  22344442    233  


Q ss_pred             CCceeEEEEcc-cccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCL-SLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~-~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...--+++..+ ++-.+   +...||..+...|+||-+|++
T Consensus       151 ~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         151 RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence            23333333333 33334   455999999999999998874

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=86.91  E-value=1.5  Score=37.69  Aligned_cols=76  Identities=14%  Similarity=0.082  Sum_probs=45.4

Q ss_pred             CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcEEE----ccCCCCCCCCCceeEEEEcccccCCCHHHHHHH
Q 027441          141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSVIA----CDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQE  210 (223)
Q Consensus       141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~~~----~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e  210 (223)
                      ++.+||=+|||. |.++..++    . .|+++|..+.+.....    .|....  ....||+|+-+..-     +..+..
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G~-----~~~~~~  216 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASGD-----PSLIDT  216 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCCC-----HHHHHH
Confidence            456788889874 44555454    2 3667777653322111    111110  12458988865442     457788


Q ss_pred             HHHccCCCCEEEc
Q 027441          211 AQRVLKPRGEEQI  223 (223)
Q Consensus       211 ~~rvLkpgG~lvi  223 (223)
                      +.++|+++|.+++
T Consensus       217 ~~~~l~~~G~iv~  229 (308)
T TIGR01202       217 LVRRLAKGGEIVL  229 (308)
T ss_pred             HHHhhhcCcEEEE
Confidence            8999999999874

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=86.64  E-value=1.2  Score=39.84  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS  170 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~  170 (223)
                      .++..+.+..+-..|+|+|.|.|.++..+.    -.|.|+|-+.
T Consensus       143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq  186 (476)
T KOG2651|consen  143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ  186 (476)
T ss_pred             HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence            344455566567899999999999999998    4799999885

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=86.20  E-value=1  Score=38.48  Aligned_cols=54  Identities=11%  Similarity=0.123  Sum_probs=38.7

Q ss_pred             eEEEECCcchHHHHHhc----CceEEEecCCC---------CCcEEEccCCCCCCC--CCceeEEEEcc
Q 027441          144 VIADFGCGDARLAKSVK----NKVFSFDLVSN---------DPSVIACDMSNTPLN--SSSVDVAVFCL  197 (223)
Q Consensus       144 ~ILDiGcG~G~~a~~la----~~v~gvDis~~---------~~~~~~~d~~~lp~~--~~sfD~Vi~~~  197 (223)
                      +++|+-||.|.++..+.    ..|.++|+++.         ...++.+|+..+...  ...+|+|+.+.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence            68999999999877665    35789999871         123567788776432  35699999764

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=85.57  E-value=1.7  Score=37.91  Aligned_cols=81  Identities=16%  Similarity=0.237  Sum_probs=47.6

Q ss_pred             CCCeEEEECCcc-hHHHHHhc------CceEEEecCCCCCcEEEc-cCC-CC-CCCC-CceeEEEEcccccCCCHHHHHH
Q 027441          141 PSLVIADFGCGD-ARLAKSVK------NKVFSFDLVSNDPSVIAC-DMS-NT-PLNS-SSVDVAVFCLSLMGINFPNYLQ  209 (223)
Q Consensus       141 ~~~~ILDiGcG~-G~~a~~la------~~v~gvDis~~~~~~~~~-d~~-~l-p~~~-~sfD~Vi~~~~l~~~d~~~~l~  209 (223)
                      ++.+||=+|||. |.++..++      .+|+++|.++.+..+... +.. .. .+.+ ..+|+|+-+-.-  ...+..+.
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~--~~~~~~~~  240 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGG--RGSQSAIN  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCC--CccHHHHH
Confidence            678999999875 33333221      368899988744433211 110 00 1111 247888854431  01256788


Q ss_pred             HHHHccCCCCEEEc
Q 027441          210 EAQRVLKPRGEEQI  223 (223)
Q Consensus       210 e~~rvLkpgG~lvi  223 (223)
                      ...++|++||.+++
T Consensus       241 ~~~~~l~~~G~iv~  254 (341)
T cd08237         241 QIIDYIRPQGTIGL  254 (341)
T ss_pred             HHHHhCcCCcEEEE
Confidence            89999999999874

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=85.30  E-value=1.9  Score=36.39  Aligned_cols=18  Identities=22%  Similarity=0.132  Sum_probs=16.9

Q ss_pred             HHHHHHHHccCCCCEEEc
Q 027441          206 NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       206 ~~l~e~~rvLkpgG~lvi  223 (223)
                      .+|..++..|.|||+++|
T Consensus       193 ~aLe~lyprl~~GGiIi~  210 (248)
T PF05711_consen  193 DALEFLYPRLSPGGIIIF  210 (248)
T ss_dssp             HHHHHHGGGEEEEEEEEE
T ss_pred             HHHHHHHhhcCCCeEEEE
Confidence            899999999999999986

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PHA01634 hypothetical protein

Probab=84.79  E-value=1  Score=34.23  Aligned_cols=30  Identities=13%  Similarity=-0.010  Sum_probs=26.9

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS  170 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~  170 (223)
                      .+.+|+|||++-|..+.+++    ..|+++++++
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~   61 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE   61 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence            67999999999999888886    5899999987

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=84.75  E-value=4.6  Score=32.97  Aligned_cols=83  Identities=14%  Similarity=0.095  Sum_probs=53.7

Q ss_pred             CCCeEEEECCcchHHHHHhc---------CceEEEecCC----------CCCcEEEccCCCCCC------CCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVS----------NDPSVIACDMSNTPL------NSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~----------~~~~~~~~d~~~lp~------~~~sfD~Vi~  195 (223)
                      +...|+++|.-.|..+.+++         .+|+++||+-          +++.|+.++..++..      ..+.+--|+.
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv  148 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV  148 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence            56889999999998877776         3789999884          456677777655321      1222334444


Q ss_pred             cc-cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CL-SLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~-~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +. +-|+. ..-..|+-+.++|..|-++++
T Consensus       149 ilDsdHs~~hvLAel~~~~pllsaG~Y~vV  178 (237)
T COG3510         149 ILDSDHSMEHVLAELKLLAPLLSAGDYLVV  178 (237)
T ss_pred             EecCCchHHHHHHHHHHhhhHhhcCceEEE
Confidence            44 44443 344666667778888877764

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=84.19  E-value=2.9  Score=34.14  Aligned_cols=79  Identities=22%  Similarity=0.327  Sum_probs=47.9

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCC-------CCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP-------LNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp-------~~~~sfD~Vi~~~~l~  200 (223)
                      .++.+||.+|+|+ |..+..++    .+|++++.++....+       ...+.....       .....+|+|+.+... 
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~-  211 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG-  211 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC-
Confidence            4678999999986 44444443    478888877522111       011111111       123568999876542 


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                          ...+..+.+.|+++|.++.
T Consensus       212 ----~~~~~~~~~~l~~~G~~v~  230 (271)
T cd05188         212 ----PETLAQALRLLRPGGRIVV  230 (271)
T ss_pred             ----HHHHHHHHHhcccCCEEEE
Confidence                2567778889999999863

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=84.03  E-value=2.3  Score=40.90  Aligned_cols=35  Identities=17%  Similarity=0.130  Sum_probs=25.1

Q ss_pred             CceeEEEEcccccCCCH----HHHHHHHHHccCCCCEEE
Q 027441          188 SSVDVAVFCLSLMGINF----PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d~----~~~l~e~~rvLkpgG~lv  222 (223)
                      ..||+|+.-..--.-++    +.+|..+.|+++|||+|+
T Consensus       165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~  203 (662)
T PRK01747        165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA  203 (662)
T ss_pred             ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence            45788875543222233    399999999999999986

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=83.72  E-value=1.7  Score=38.97  Aligned_cols=52  Identities=15%  Similarity=0.093  Sum_probs=40.8

Q ss_pred             CCcEEEccCCCC--CCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441          172 DPSVIACDMSNT--PLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       172 ~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                      ++.+..+++.+.  ..++++||.++....+.|+++.   ..+.++.+.++|||.+++
T Consensus       276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~  332 (380)
T PF11899_consen  276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW  332 (380)
T ss_pred             eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence            445556666443  2457999999999999999544   889999999999999874

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=83.37  E-value=2  Score=37.45  Aligned_cols=70  Identities=20%  Similarity=0.278  Sum_probs=43.6

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC-----
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP-----  184 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp-----  184 (223)
                      ++.+++.|... ++..++|.--|.|..+..+.     .+|+|+|-.+              .++.++.+++.+++     
T Consensus         9 l~Evl~~L~~~-~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~   87 (310)
T PF01795_consen    9 LKEVLEALNPK-PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE   87 (310)
T ss_dssp             HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred             HHHHHHhhCcC-CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence            35677777755 77899999999999988876     5899999986              34556666665532     


Q ss_pred             C-CCCceeEEEEcccc
Q 027441          185 L-NSSSVDVAVFCLSL  199 (223)
Q Consensus       185 ~-~~~sfD~Vi~~~~l  199 (223)
                      . ....+|.|++-..+
T Consensus        88 ~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   88 LNGINKVDGILFDLGV  103 (310)
T ss_dssp             TTTTS-EEEEEEE-S-
T ss_pred             ccCCCccCEEEEcccc
Confidence            2 33578888765544

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=81.63  E-value=4.6  Score=35.97  Aligned_cols=83  Identities=18%  Similarity=0.115  Sum_probs=51.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----C----ceEEEecCC---------------CCCcEEEccCCCCC---------CC
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----N----KVFSFDLVS---------------NDPSVIACDMSNTP---------LN  186 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~----~v~gvDis~---------------~~~~~~~~d~~~lp---------~~  186 (223)
                      .|+.+|||+.+.+|.=+..|.     .    .|++=|++.               .+..+...|+..+|         ..
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~  233 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE  233 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence            488999999999998554432     2    678888875               22223333332222         22


Q ss_pred             CCceeEEEEc-----cccc-CC-C-----------------HHHHHHHHHHccCCCCEEE
Q 027441          187 SSSVDVAVFC-----LSLM-GI-N-----------------FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       187 ~~sfD~Vi~~-----~~l~-~~-d-----------------~~~~l~e~~rvLkpgG~lv  222 (223)
                      ...||-|+|-     .+.+ +- +                 -..+|....++||+||.|+
T Consensus       234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lV  293 (375)
T KOG2198|consen  234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLV  293 (375)
T ss_pred             hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEE
Confidence            3467877743     1111 11 1                 1178888899999999987

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=81.58  E-value=1.7  Score=39.72  Aligned_cols=28  Identities=18%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             CeEEEECCcchHHHHHhc----CceEEEecCC
Q 027441          143 LVIADFGCGDARLAKSVK----NKVFSFDLVS  170 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la----~~v~gvDis~  170 (223)
                      ..|||||+|||.++...+    ..|++++.--
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~Evfk   99 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFK   99 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhc
Confidence            579999999999887665    4788887664

>cd08230 glucose_DH Glucose dehydrogenase

Probab=81.32  E-value=4.1  Score=35.54  Aligned_cols=76  Identities=20%  Similarity=0.229  Sum_probs=45.8

Q ss_pred             CCCeEEEECCcc-hHHHHHhc----CceEEEec---CCCC--------CcEEEccCCCCC----CCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGD-ARLAKSVK----NKVFSFDL---VSND--------PSVIACDMSNTP----LNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~-G~~a~~la----~~v~gvDi---s~~~--------~~~~~~d~~~lp----~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+||=+|||. |.++..++    .+|++++.   ++.+        .+++  +.....    .....||+|+-+..  
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g--  247 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG--  247 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC--
Confidence            567899999875 44444444    47888876   3311        1221  111111    01245888886554  


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         .+..+.++.++|++||.+++
T Consensus       248 ---~~~~~~~~~~~l~~~G~~v~  267 (355)
T cd08230         248 ---VPPLAFEALPALAPNGVVIL  267 (355)
T ss_pred             ---CHHHHHHHHHHccCCcEEEE
Confidence               14578889999999999863

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=80.64  E-value=2.1  Score=34.40  Aligned_cols=31  Identities=13%  Similarity=0.243  Sum_probs=22.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS  170 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~  170 (223)
                      .++..|||.=||+|..+.+..   .+.+|+|+++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~  223 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE  223 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred             ccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence            478999999999998766554   6899999986

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO

Probab=80.52  E-value=9.8  Score=29.82  Aligned_cols=78  Identities=13%  Similarity=0.079  Sum_probs=36.0

Q ss_pred             CCCeEEEECCcchHHHHHhc----Cc--eEEEecCCCCC-------cEEEccCCCCCCCCCceeEEEEcccccCCCHHHH
Q 027441          141 PSLVIADFGCGDARLAKSVK----NK--VFSFDLVSNDP-------SVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY  207 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~--v~gvDis~~~~-------~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~  207 (223)
                      .+.+|.=.|+|+...+..-.    ..  .+.+|.++...       .+-+..-+.  +.....|+|+...   |.-...+
T Consensus        67 ~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~--l~~~~pd~vivla---w~y~~EI  141 (160)
T PF08484_consen   67 EGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEE--LKERKPDYVIVLA---WNYKDEI  141 (160)
T ss_dssp             TT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG----SS--SEEEES----GGGHHHH
T ss_pred             cCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHH--HhhCCCCEEEEcC---hhhHHHH
Confidence            56889999999877554322    22  34678877221       111111122  2234568776422   2223577


Q ss_pred             HHHHHHccCCCCEEEc
Q 027441          208 LQEAQRVLKPRGEEQI  223 (223)
Q Consensus       208 l~e~~rvLkpgG~lvi  223 (223)
                      ++.+...+..||.|++
T Consensus       142 ~~~~~~~~~~gg~fi~  157 (160)
T PF08484_consen  142 IEKLREYLERGGKFIV  157 (160)
T ss_dssp             HHHTHHHHHTT-EEEE
T ss_pred             HHHHHHHHhcCCEEEE
Confidence            7777778889999985

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=80.32  E-value=6  Score=29.88  Aligned_cols=67  Identities=18%  Similarity=0.203  Sum_probs=37.3

Q ss_pred             HHHHHhccCCCCeEEEECCcchH-HHHHhc---CceEEEecCCC----CCcEEEccCCCCCCC-CCceeEEEEccc
Q 027441          132 IVKWLKDHSPSLVIADFGCGDAR-LAKSVK---NKVFSFDLVSN----DPSVIACDMSNTPLN-SSSVDVAVFCLS  198 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~-~a~~la---~~v~gvDis~~----~~~~~~~d~~~lp~~-~~sfD~Vi~~~~  198 (223)
                      +..++.......+|++||-|.=. .+..|.   -.|+++|+.+.    .+.++.-|+.+..+. -...|+|.+..-
T Consensus         4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiRP   79 (127)
T PF03686_consen    4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIRP   79 (127)
T ss_dssp             HHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES-
T ss_pred             HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeCC
Confidence            33444433355699999999754 455555   47999999986    788889999875432 245788886554

; PDB: 2K4M_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
2zfu_A	215	Structure Of The Methyltransferase-Like Domain Of N		2e-41

>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of Nucleomethylin Length = 215

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 94/145 (64%)
Query: 75  MRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVK 134
           M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I +
Sbjct: 1   MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIAR 60
Query: 135 WLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAV 194
            L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   SVDVAV
Sbjct: 61  DLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAV 120
Query: 195 FCLSLMGINFPNYLQEAQRVLKPRG 219
           FCLSLMG N  ++L+EA RVLKP G
Sbjct: 121 FCLSLMGTNIRDFLEEANRVLKPGG 145
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	3e-63
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-09
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-08
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-07
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	5e-07
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	5e-07
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-06
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	1e-06
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-06
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	6e-06
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	6e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	7e-06
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	1e-05
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	1e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-05
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	3e-05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	4e-05
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	9e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	1e-04
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	3e-04
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	4e-04
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	5e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	7e-04

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score =  195 bits (496), Expect = 3e-63
 Identities = 78/149 (52%), Positives = 96/149 (64%)

Query: 75  MRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVK 134
           M  RL G  FR LNE+LY+     A   F E+P  F +YH G+Q Q+  WP  PV+ I +
Sbjct: 1   MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIAR 60

Query: 135 WLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAV 194
            L+    SLV+ADFGCGD RLA S++N V  FDL S DP V  CDM+  PL   SVDVAV
Sbjct: 61  DLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAV 120

Query: 195 FCLSLMGINFPNYLQEAQRVLKPRGEEQI 223
           FCLSLMG N  ++L+EA RVLKP G  ++
Sbjct: 121 FCLSLMGTNIRDFLEEANRVLKPGGLLKV 149

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 30/108 (27%)

Query: 132 IVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMS---------- 181
            +  + +     VI D+GCG+           +   L+     +   D++          
Sbjct: 9   YLPNIFE-GKKGVIVDYGCGNGF---------YCKYLLEFATKLYCIDINVIALKEVKEK 58

Query: 182 ---------NTPLNSSSVDVAVFCLSLMGINFPN-YLQEAQRVLKPRG 219
                       +  +SVD  +F  S   ++     + E +R+LK  G
Sbjct: 59  FDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDG 106

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 37/136 (27%)

Query: 108 ALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFD 167
           ++++     Y +       + VN I+  L     S++ AD G G            +S  
Sbjct: 3   SIYNSIGKQYSQTRVPDIRI-VNAIINLLNLPKGSVI-ADIGAG---------TGGYSVA 51

Query: 168 LVSNDPSVIACDMS---------------------NTPLNSSSVDVAVFCLSLMGINFPN 206
           L +    V A + S                     N  L   SVD  +  L++   +F +
Sbjct: 52  LANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIH--HFSH 109

Query: 207 Y---LQEAQRVLKPRG 219
                QE QR+++   
Sbjct: 110 LEKSFQEMQRIIRDGT 125

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 18/131 (13%)

Query: 106 NPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKSVKN 161
           +   F+ Y    + +         + + K L D +   V+ D GCG        A+    
Sbjct: 10  DKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVL-DLGCGFGWHCIYAAEHGAK 68

Query: 162 KVFSFDL------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYL 208
           KV   DL             S         + +  +   + +V +  L+L  I +F +  
Sbjct: 69  KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDIC 128

Query: 209 QEAQRVLKPRG 219
           ++    LK  G
Sbjct: 129 KKVYINLKSSG 139

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 20/104 (19%)

Query: 136 LKDHSPSLVIADFGCG---DAR-LAKSVKNKVFSFDL----------------VSNDPSV 175
           + + +   +IAD GCG       LA  V  +V   D                 + N  + 
Sbjct: 41  IDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTG 100

Query: 176 IACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           I   M + P  +  +D+     ++  I F   L E ++ LK  G
Sbjct: 101 IVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGG 144

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 20/104 (19%)

Query: 136 LKDHSPSLVIADFGCG---DAR-LAKSVKNKVFSFDL----------------VSNDPSV 175
           + + +    IAD GCG       LA  VK ++   DL                 ++    
Sbjct: 41  INELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKG 100

Query: 176 IACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
           I   M N P  +  +D+     ++  I F   + E  + LK  G
Sbjct: 101 ITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGG 144

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 30/143 (20%)

Query: 104 NENPALFDMYHSGYQEQMSHWPELPV-NIIVKWLKDHS---PSLVIADFGCG----DARL 155
           +EN   FD   +   +++S     P+  II + + +         I D G G       L
Sbjct: 3   SENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGTCI-DIGSGPGALSIAL 61

Query: 156 AKSVKNKVFSFDL----------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSL 199
           AK     + + D                 +++   ++  D+ N P+  +  D+ V   S+
Sbjct: 62  AKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSV 121

Query: 200 MGINFPNY---LQEAQRVLKPRG 219
               + +     +E  R+LK  G
Sbjct: 122 F--FWEDVATAFREIYRILKSGG 142

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 36/149 (24%)

Query: 96  GKEALDYFNENPALFD----MYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCG 151
           G E    F+E    +D         Y+E  +H+ ++     ++ + +      + +FG G
Sbjct: 2   GTEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDI-----LEDVVNK-SFGNVLEFGVG 55

Query: 152 DARLAKSVKNKVFSFDLVSNDPS----------------VIACDMSNTPLNSSSVDVAVF 195
              L   +     +   +  +PS                +   D  +  + +S +D  V 
Sbjct: 56  TGNLTNKLLLAGRTVYGI--EPSREMRMIAKEKLPKEFSITEGDFLSFEVPTS-IDTIVS 112

Query: 196 CLSLMGINFPNY-----LQEAQRVLKPRG 219
             +    +  +      + +  ++L   G
Sbjct: 113 TYAFH--HLTDDEKNVAIAKYSQLLNKGG 139

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 14/142 (9%), Positives = 37/142 (26%), Gaps = 29/142 (20%)

Query: 97  KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLA 156
           +  L Y+    + +D            + +      ++ L+  +    + +   G     
Sbjct: 9   ESQLSYYRARASEYD-------ATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWT 61

Query: 157 KSVKNKVFSFDLVSNDPS----------------VIACDMSNTPLNSSSVDVAVFCLSLM 200
           + +         +  D S                    D+ +   +    D   F   L 
Sbjct: 62  RHLSGLADRVTAL--DGSAEMIAEAGRHGLDNVEFRQQDLFDWTPD-RQWDAVFFAHWLA 118

Query: 201 GI---NFPNYLQEAQRVLKPRG 219
            +    F  + +  +  + P G
Sbjct: 119 HVPDDRFEAFWESVRSAVAPGG 140

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 22/135 (16%)

Query: 105 ENPALFDMYHSGYQ--EQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKS 158
           + P  F  Y    +  E +    E P   +   L +     ++ D GCG         + 
Sbjct: 8   DQPDFFAGYSQLGRSIEGLDGAAEWPA--LRAMLPEVGGLRIV-DLGCGFGWFCRWAHEH 64

Query: 159 VKNKVFSFDL------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFP 205
             + V   DL                 +    D+    L   S D+A   L+L  + +  
Sbjct: 65  GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA 124

Query: 206 NYLQEAQRVLKPRGE 220
              +   + L P G 
Sbjct: 125 RLFRTVHQALSPGGH 139

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 29/135 (21%)

Query: 110 FDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKSVKN--KV 163
           FD       +  S         ++K        + + D G G       L+K V    KV
Sbjct: 7   FDPSKIKKLDDPSRLELFDPEKVLKEFGLK-EGMTVLDVGTGAGFYLPYLSKMVGEKGKV 65

Query: 164 FSFDL----------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPN- 206
           ++ D+                + N   V+  + +  PL  ++VD      +         
Sbjct: 66  YAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEENKIPLPDNTVDFIFMAFTFH--ELSEP 122

Query: 207 --YLQEAQRVLKPRG 219
             +L+E +RV KP  
Sbjct: 123 LKFLEELKRVAKPFA 137

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 40/148 (27%)

Query: 101 DYFNENPALFDMYHSGYQEQMSH-WPELPVNIIVKWLKDH-SPSLVIADFGCGDARLAKS 158
           ++       +D     + +     W     + I+ + + +      + D GCGD      
Sbjct: 11  NWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGY---- 66

Query: 159 VKNKVFSFDLVSNDPSVIACDMS------------------------NTPLNSSSVDVAV 194
                 ++ L       +  D+S                        + P  +   +  +
Sbjct: 67  -----GTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIM 121

Query: 195 FCLSLMGINFPNY---LQEAQRVLKPRG 219
              SL           L E +RVLK  G
Sbjct: 122 AINSLE--WTEEPLRALNEIKRVLKSDG 147

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 27/142 (19%), Positives = 38/142 (26%), Gaps = 43/142 (30%)

Query: 110 FDMYHSGYQEQMSHWPELPVNI---IVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSF 166
                  Y    +H PE+   I   +   +       V  + G G  R          + 
Sbjct: 5   LLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGR---------IAL 55

Query: 167 DLVSNDPSVIACDMS--------------------------NTPLNSSSVDVAVFCLSLM 200
            L++     IA D                              PL   SV   +      
Sbjct: 56  PLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115

Query: 201 GINFPNY---LQEAQRVLKPRG 219
               P++   L EA RVLKP G
Sbjct: 116 --LVPDWPKVLAEAIRVLKPGG 135

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 26/143 (18%)

Query: 97  KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSL--VIADFGCGDAR 154
            +AL+Y+   PA       G      H  ++ +     ++            D G G  R
Sbjct: 51  GKALEYWRTVPATVSGVLGGM----DHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGR 106

Query: 155 LAKSVKNKVF-SFDLVSNDPSVIA----------------CDMSNTPLNSSSVDVAVFCL 197
           + K++  K++ + DL+     ++                   M    L  ++ D+ V   
Sbjct: 107 ITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW 166

Query: 198 SLMGIN---FPNYLQEAQRVLKP 217
           + + +    F  + +  Q+ L P
Sbjct: 167 TAIYLTDADFVKFFKHCQQALTP 189

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 21/144 (14%)

Query: 86  MLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVI 145
           M ++K++          F      ++ +   ++       +         +K   P    
Sbjct: 1   MGSDKIHHHH-HHMWHIFERFVNEYERWFLVHRFAYLSELQA--------VKCLLPEGRG 51

Query: 146 ADFGCGDARLAKSVKNKV---FSFDLV----SNDPSVIACDMSNTPLNSSSVDVAVFCLS 198
            + G G  R A  +K K+    S  +          V+     N PL   S D A+   +
Sbjct: 52  VEIGVGTGRFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTT 111

Query: 199 LMGINFPNY---LQEAQRVLKPRG 219
           +      +    L+EA R+LK  G
Sbjct: 112 IC--FVDDPERALKEAYRILKKGG 133

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 30/155 (19%)

Query: 86  MLNEKLYTCTGKEAL---DYFNENPALFD-MYHSGYQEQMSHWPELPVNIIVKWLKDHSP 141
           M ++K++       L   ++++     +D MY +    +   +  L  + + ++LK    
Sbjct: 1   MGSDKIHHHHHHMKLRSWEFYDRIARAYDSMYET---PKWKLYHRLIGSFLEEYLK---N 54

Query: 142 SLVIADFGCGDARLAKSVKNKVFSFDLVSNDPS--------------VIACDMSNTPLNS 187
              + D G G  + +  ++ + F  ++V  DPS              V+     + P  S
Sbjct: 55  PCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPS 112

Query: 188 SSVDVAVFCLSLMGINFPNY---LQEAQRVLKPRG 219
            + + AV  L  +     N      E +RVL P G
Sbjct: 113 GAFE-AVLALGDVLSYVENKDKAFSEIRRVLVPDG 146

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 145 IADFGCGDARLAKSVKNK---VFSFDLVSN----------DPSVIACDMSNTPLNSSSVD 191
           I D GCG  R+   +  +   V   DL             +   +  D+S   ++ +  D
Sbjct: 50  ILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFD 109

Query: 192 VAVFCLSLMGI----NFPNYLQEAQRVLKPRG 219
           + V   ++MG          L    R L   G
Sbjct: 110 LIVSAGNVMGFLAEDGREPALANIHRALGADG 141

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 21/139 (15%)

Query: 98  EALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAK 157
             LD +++N      +    +           +  +           + D GCG+  L +
Sbjct: 12  ALLDSWHQN---AQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLR 68

Query: 158 SVKN---KVFSFDL--------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200
           ++ +   +    D                 +  S      +  P+     D+     +L+
Sbjct: 69  ALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKD-YDLICANFALL 127

Query: 201 GINFPNYLQEAQRVLKPRG 219
             +    L   + +L P G
Sbjct: 128 HQDIIELLSAMRTLLVPGG 146

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 145 IADFGCGDARLAKSVKN---KVFSFDLVSN----------DPSVIACDMSNTPLNSSSVD 191
           I D G G  R    + +   ++   +  +             +     +++   +     
Sbjct: 45  ILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWA 104

Query: 192 VAVFCLSLMGI---NFPNYLQEAQRVLKPRG 219
             +   SL+ +     P+ L   +  ++  G
Sbjct: 105 GLLAWYSLIHMGPGELPDALVALRMAVEDGG 135

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 21/108 (19%)

Query: 133 VKWLKDHSPSLVIADFGCG---DAR-LAKSVKNKVFSFDLVSN--------------DPS 174
           +K+  + +    + D G G       +      K +  ++                   +
Sbjct: 15  LKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLN 74

Query: 175 VIACDMSNTPLNSSSVDVAVFCLSLMGINFPN---YLQEAQRVLKPRG 219
           +   D+   P    S+       ++  +   +    + E +RVLKP G
Sbjct: 75  ISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGG 122

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 27/139 (19%)

Query: 101 DYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK 160
           +Y+   P   D+    Y+ ++     L    ++K++K       + D  CG    +  ++
Sbjct: 5   EYYRVFPTYTDINSQEYRSRIETLEPL----LMKYMK---KRGKVLDLACGVGGFSFLLE 57

Query: 161 NKVFS---FDLVSN--------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN 203
           +  F     D+  +              +   I  D         + D  +F  S++   
Sbjct: 58  DYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 117

Query: 204 FPNY---LQEAQRVLKPRG 219
                   +E +RVLKP G
Sbjct: 118 PLELNQVFKEVRRVLKPSG 136

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 27/149 (18%)

Query: 97  KEALDYFNENPALFDMYHSGYQEQ---MSHWPELPVNIIVKWLKDHSPSLVIADFGCGDA 153
            +A  Y+ + P   D    GY        +     +   ++   + + +    D G G  
Sbjct: 32  SKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIG 91

Query: 154 RLAKSVKNKVFSFDLVSNDPS--------------------VIACDMSNTPLNSSSVDVA 193
           R+ K +   +F  ++   D +                       C + +      S DV 
Sbjct: 92  RITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVI 150

Query: 194 VFCLSLMGINFP---NYLQEAQRVLKPRG 219
                +  +       +L+  +  L+P G
Sbjct: 151 WIQWVIGHLTDQHLAEFLRRCKGSLRPNG 179

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 29/129 (22%)

Query: 111 DMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCG----DARLAKSVKNKVFSF 166
           +   SG  E            I+  ++ +  S V+ D G G       + +         
Sbjct: 34  NYISSGGLEATKK--------ILSDIELNENSKVL-DIGSGLGGGCMYINEKYGAHTHGI 84

Query: 167 DL-------------VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPN---YLQE 210
           D+              +N     A D+       ++ D+     +++ ++  N     Q+
Sbjct: 85  DICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQK 144

Query: 211 AQRVLKPRG 219
             + LKP G
Sbjct: 145 CYKWLKPTG 153

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 22/129 (17%)

Query: 106 NPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKSVKN 161
           +  +     +             +   ++   D   + V+ D GCG+       A ++  
Sbjct: 51  SAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVL-DIGCGEGYYTHAFADALPE 109

Query: 162 -KVFSFDL--------VSNDPSVIAC--DMSNTPLNSSSVDVAVFCLSLMGINFPNYLQE 210
              F  D+            P V  C       P + +S+D  +   +      P   +E
Sbjct: 110 ITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA------PCKAEE 163

Query: 211 AQRVLKPRG 219
             RV+KP G
Sbjct: 164 LARVVKPGG 172

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 14/125 (11%), Positives = 33/125 (26%), Gaps = 43/125 (34%)

Query: 132 IVKWLKDH--SPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMS-------- 181
             K + ++      ++ D GCG       +  ++  F+       +I  D+S        
Sbjct: 25  FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFE------QIIGSDLSATMIKTAE 78

Query: 182 ---------------------------NTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRV 214
                                         ++   +D+          +F  + + A   
Sbjct: 79  VIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYAN 138

Query: 215 LKPRG 219
           L+  G
Sbjct: 139 LRKDG 143

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 26/132 (19%)

Query: 110 FDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGD----ARLAKSVKNKVFS 165
              +H  Y     H     +  +++         V+ D   G        A  VK KV +
Sbjct: 7   HHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVL-DVATGGGHVANAFAPFVK-KVVA 64

Query: 166 FDLVSN---------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY--- 207
           FDL  +                   +  D    P       +    ++    +FPN    
Sbjct: 65  FDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH--HFPNPASF 122

Query: 208 LQEAQRVLKPRG 219
           + EA RVLK  G
Sbjct: 123 VSEAYRVLKKGG 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.9
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.84
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.77
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.72
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.71
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.71
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.71
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.71
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.71
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.71
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.71
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.7
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.7
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.69
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.69
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.69
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.68
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.68
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.68
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.68
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.68
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.67
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.67
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.67
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.67
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.66
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.66
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.66
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.65
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.65
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.65
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.65
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.65
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.65
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.65
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.65
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.65
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.64
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.64
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.64
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.64
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.64
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.62
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.62
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.61
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.61
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.61
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.61
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.61
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.6
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.6
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.6
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.59
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.59
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.59
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.58
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.58
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.58
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.58
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.58
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.58
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.57
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.57
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.57
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.57
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.56
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.55
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.55
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.54
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.54
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.54
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.54
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.54
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.53
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.53
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.53
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.53
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.53
3ocj_A	305	Putative exported protein; structural genomics, PS	99.53
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.53
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.52
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.52
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.52
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.5
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.5
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.5
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.5
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.49
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.49
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.49
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.49
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.48
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.48
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.47
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.47
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.47
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.47
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.46
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.46
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.46
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.46
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.46
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.45
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.45
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.45
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.45
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.45
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.45
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.44
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.44
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.44
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.44
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.44
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.44
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.43
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.43
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.43
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.43
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.43
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.43
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.43
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.42
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.42
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.42
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.42
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.42
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.42
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.41
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.41
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.41
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.41
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.4
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.4
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.4
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.39
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.39
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.39
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.39
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.39
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.37
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.37
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.37
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.37
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.36
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.36
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.36
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.36
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.35
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.35
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.35
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.35
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.35
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.34
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.34
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.33
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.33
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.33
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.32
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.31
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.31
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.31
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.31
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.3
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.3
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.29
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.29
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.29
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.28
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.28
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.28
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.28
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.28
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.28
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.27
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.27
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.27
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.27
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.27
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.26
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.26
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.26
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.25
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.25
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.24
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.24
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.23
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.23
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.22
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.22
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.22
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.21
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.2
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.2
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.2
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.19
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.19
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.19
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.18
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.17
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.16
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.16
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.15
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.14
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.14
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.14
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.13
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.12
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.11
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.11
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.11
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.1
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.09
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.08
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.08
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.07
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.06
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.06
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.06
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.05
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.05
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.04
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.04
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.03
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.03
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.02
2o07_A	304	Spermidine synthase; structural genomics, structur	99.01
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.0
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.98
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.98
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.98
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.98
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.97
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.95
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.95
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.94
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.93
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.93
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.93
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.92
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.91
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.91
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.9
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.89
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.89
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.88
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.87
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.87
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.86
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.86
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.85
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.83
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.83
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.82
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.8
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.8
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.75
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.71
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.7
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.59
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.58
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.55
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.49
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.47
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.46
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.46
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.44
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.42
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.41
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.41
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.39
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.35
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.34
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.3
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.3
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.29
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.26
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.23
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.22
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.22
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.2
3khk_A	544	Type I restriction-modification system methylation	98.2
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.19
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.19
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.16
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.14
3lkd_A	542	Type I restriction-modification system methyltrans	98.09
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.01
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.9
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.89
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.73
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.73
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.69
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.68
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.67
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.38
3ufb_A	530	Type I restriction-modification system methyltran	97.33
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.25
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.07
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.32
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	95.85
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.4
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	95.33
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	94.83
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	94.64
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.08
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.35
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.15
2zig_A	297	TTHA0409, putative modification methylase; methylt	92.81
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	92.73
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	92.67
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	92.66
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	92.58
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	91.92
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	91.75
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	91.11
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	90.83
3gms_A	340	Putative NADPH:quinone reductase; structural genom	90.63
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	90.42
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	90.07
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	89.58
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	89.54
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	89.48
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	89.4
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	89.27
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	89.01
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	88.83
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	88.79
2oo3_A	283	Protein involved in catabolism of external DNA; st	88.5
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	88.49
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	88.45
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	88.38
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	88.26
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	88.23
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	87.82
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	87.78
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	87.13
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	86.89
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	86.76
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	86.18
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	85.9
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	85.62
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	85.31
4eye_A	342	Probable oxidoreductase; structural genomics, niai	85.29
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	85.25
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	85.09
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	84.39
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	84.1
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	83.95
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	83.65
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	83.48
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	83.21
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	83.21
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	82.61
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	82.37
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	82.28
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	82.14
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	81.56
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	81.27
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	81.26
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	81.14
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	80.97
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	80.62
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	80.23
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	80.18
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	80.14

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.1e-23  Score=170.73  Aligned_cols=149  Identities=52%  Similarity=0.922  Sum_probs=134.8

Q ss_pred             HHchhcccccccccccccccCchHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccCCCCeEEEECCcchH
Q 027441           75 MRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDAR  154 (223)
Q Consensus        75 ~~~~~~~~~fr~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~  154 (223)
                      |+..+.+++|+++++..+.........+|...+..|+.+...|......|+....+.++..+....++.+|||||||+|.
T Consensus         1 m~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~   80 (215)
T 2zfu_A            1 MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCR   80 (215)
T ss_dssp             -CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCH
T ss_pred             ChhHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCH
Confidence            34456778899999999988888888999999999999998888888789998888889988766577899999999999


Q ss_pred             HHHHhcCceEEEecCCCCCcEEEccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          155 LAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       155 ~a~~la~~v~gvDis~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..++.+|+|+|+++.++.+..+|+..+|+++++||+|++..++||.++..++.++.++|+|||.|+|
T Consensus        81 ~~~~l~~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i  149 (215)
T 2zfu_A           81 LASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKV  149 (215)
T ss_dssp             HHHHCCSCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHhhccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEE
Confidence            999999999999999999999999999999999999999999999877999999999999999999985

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.84  E-value=3.5e-21  Score=161.73  Aligned_cols=92  Identities=21%  Similarity=0.341  Sum_probs=80.7

Q ss_pred             HHHHHhcc-CCCCeEEEECCcchHHHHHhc---CceEEEecCC---------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441          132 IVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       132 i~~~l~~~-~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      ++++|... +...+|||||||+|.++..|+   .+|+|+|+|+         .++.+.++|++++|+++++||+|++..+
T Consensus        29 l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~  108 (257)
T 4hg2_A           29 LFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQA  108 (257)
T ss_dssp             HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSC
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeee
Confidence            34444332 345799999999999999998   5899999997         5788999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||++++.++.++.|+|||||.|++
T Consensus       109 ~h~~~~~~~~~e~~rvLkpgG~l~~  133 (257)
T 4hg2_A          109 MHWFDLDRFWAELRRVARPGAVFAA  133 (257)
T ss_dssp             CTTCCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhHhhHHHHHHHHHHHcCCCCEEEE
Confidence            9999999999999999999999875

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.77  E-value=1.1e-18  Score=145.17  Aligned_cols=109  Identities=19%  Similarity=0.281  Sum_probs=86.1

Q ss_pred             HHhHHhhhccCCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcE
Q 027441          114 HSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSV  175 (223)
Q Consensus       114 ~~~~~~~~~~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~  175 (223)
                      +.+|......++...+..+++.+... ++.+|||||||+|.++..++   .+|+|+|+|+               .++.+
T Consensus        11 ~~~~~~s~~~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~   89 (260)
T 1vl5_A           11 HHMYVTSQIHAKGSDLAKLMQIAALK-GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEY   89 (260)
T ss_dssp             ------------CCCHHHHHHHHTCC-SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             ceeeecCccccCHHHHHHHHHHhCCC-CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEE
Confidence            44555555555666667888887655 77899999999999999887   5899999996               35789


Q ss_pred             EEccCCCCCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          176 IACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       176 ~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.+|+..+|+++++||+|++..+++|+ |+..+|.++.|+|+|||.|+|
T Consensus        90 ~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~  138 (260)
T 1vl5_A           90 VQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL  138 (260)
T ss_dssp             EECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEE
Confidence            999999999999999999999999999 999999999999999999975

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.72  E-value=2.7e-17  Score=132.58  Aligned_cols=94  Identities=11%  Similarity=0.164  Sum_probs=82.2

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-----------CCCcEEEccCCCCCCCCCceeEEE
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDVAV  194 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-----------~~~~~~~~d~~~lp~~~~sfD~Vi  194 (223)
                      ...++..+....++.+|||||||+|.++..++   .+|+|+|+++           .++.++.+|+..+ +++++||+|+
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~  112 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVF  112 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEE
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEE
Confidence            45677777766577899999999999998887   5899999997           4678999999888 7789999999


Q ss_pred             EcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      +..+++|++.   ..+|.++.++|+|||.|+|
T Consensus       113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~  144 (218)
T 3ou2_A          113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEF  144 (218)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            9999999943   7999999999999999975

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.71  E-value=1.4e-17  Score=137.84  Aligned_cols=93  Identities=22%  Similarity=0.327  Sum_probs=81.0

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      .++..+....++.+|||||||+|.++..++    .+|+|+|+++                .++.++.+|+..+|+++++|
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  115 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL  115 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence            344444444567899999999999998887    3899999997                23789999999999999999


Q ss_pred             eEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++..+++|+++..++.++.++|+|||.|+|
T Consensus       116 D~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~  148 (257)
T 3f4k_A          116 DLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAV  148 (257)
T ss_dssp             EEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEecChHhhcCHHHHHHHHHHHcCCCcEEEE
Confidence            999999999999999999999999999999985

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.71  E-value=2.5e-17  Score=133.30  Aligned_cols=92  Identities=14%  Similarity=0.218  Sum_probs=80.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------C-CCcEEEccCCCCCCCCCceeEEEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------N-DPSVIACDMSNTPLNSSSVDVAVF  195 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~-~~~~~~~d~~~lp~~~~sfD~Vi~  195 (223)
                      ..+++.+... ++.+|||||||+|.++..++   .+|+|+|+++          . ++.++.+|+..+|++ ++||+|++
T Consensus        35 ~~~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~  112 (220)
T 3hnr_A           35 EDILEDVVNK-SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVS  112 (220)
T ss_dssp             HHHHHHHHHT-CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEE
T ss_pred             HHHHHHhhcc-CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEE
Confidence            4566666655 67899999999999999887   5799999997          2 789999999999988 99999999


Q ss_pred             cccccCC-CHHH--HHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI-NFPN--YLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~-d~~~--~l~e~~rvLkpgG~lvi  223 (223)
                      ..+++|+ ++..  +|.++.++|+|||.|+|
T Consensus       113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i  143 (220)
T 3hnr_A          113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVF  143 (220)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CcchhcCChHHHHHHHHHHHHhcCCCCEEEE
Confidence            9999999 4444  99999999999999985

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.71  E-value=1.6e-17  Score=136.15  Aligned_cols=93  Identities=12%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC-----------CCcEEEccCCCCCCCCCceeEEEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN-----------DPSVIACDMSNTPLNSSSVDVAVF  195 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~-----------~~~~~~~d~~~lp~~~~sfD~Vi~  195 (223)
                      ..+++.+....++.+|||||||+|.++..++   .+|+|+|+++.           ++.++.+|+..+ +++++||+|++
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~  109 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVL  109 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEE
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEE
Confidence            4566666655567899999999999999987   47999999972           788999999887 46789999999


Q ss_pred             cccccCC-CHHHHHHHHH-HccCCCCEEEc
Q 027441          196 CLSLMGI-NFPNYLQEAQ-RVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~-d~~~~l~e~~-rvLkpgG~lvi  223 (223)
                      ..+++|+ ++..+|.++. |+|+|||.|+|
T Consensus       110 ~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i  139 (250)
T 2p7i_A          110 THVLEHIDDPVALLKRINDDWLAEGGRLFL  139 (250)
T ss_dssp             ESCGGGCSSHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhHHHhhcCHHHHHHHHHHHhcCCCCEEEE
Confidence            9999999 8999999999 99999999985

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.71  E-value=2.8e-17  Score=138.17  Aligned_cols=82  Identities=21%  Similarity=0.343  Sum_probs=71.4

Q ss_pred             CCCCeEEEECCcchHHHHHhc-------CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      .++.+|||||||+|.++..|+       .+|+|+|+|+                .++.++++|+.++|++  .||+|++.
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~  146 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN  146 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceee
Confidence            478999999999999888876       2799999996                3678999999999874  59999999


Q ss_pred             ccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++||+++   ..+|.+++|+|+|||.|+|
T Consensus       147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii  176 (261)
T 4gek_A          147 FTLQFLEPSERQALLDKIYQGLNPGGALVL  176 (261)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeeeecCchhHhHHHHHHHHHcCCCcEEEE
Confidence            99999943   4789999999999999985

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.71  E-value=1.6e-17  Score=133.11  Aligned_cols=91  Identities=14%  Similarity=0.230  Sum_probs=79.6

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      .+..++..  .+.+|||||||+|.++..++   .+|+|+|+++          .++.++.+|+..+|+++++||+|++..
T Consensus        33 ~l~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  110 (203)
T 3h2b_A           33 LIEPWATG--VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWY  110 (203)
T ss_dssp             HHHHHHHH--CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEES
T ss_pred             HHHHHhcc--CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehh
Confidence            34444433  37899999999999999887   4799999997          478899999999999899999999999


Q ss_pred             cccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++|+   ++..+|.++.++|+|||.|+|
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i  139 (203)
T 3h2b_A          111 SLIHMGPGELPDALVALRMAVEDGGGLLM  139 (203)
T ss_dssp             SSTTCCTTTHHHHHHHHHHTEEEEEEEEE
T ss_pred             hHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            99999   788999999999999999985

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.71  E-value=3.2e-17  Score=137.01  Aligned_cols=92  Identities=23%  Similarity=0.372  Sum_probs=80.5

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCcee
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      ++..+....++.+|||||||+|.++..++    .+|+|+|+++                .++.++.+|+..+|+++++||
T Consensus        37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  116 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELD  116 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEE
T ss_pred             HHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEE
Confidence            34444433467899999999999999887    3899999996                348899999999999999999


Q ss_pred             EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++..+++|+++..++.++.++|+|||.|+|
T Consensus       117 ~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  148 (267)
T 3kkz_A          117 LIWSEGAIYNIGFERGLNEWRKYLKKGGYLAV  148 (267)
T ss_dssp             EEEESSCGGGTCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEcCCceecCHHHHHHHHHHHcCCCCEEEE
Confidence            99999999999999999999999999999985

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.71  E-value=3.4e-17  Score=134.29  Aligned_cols=83  Identities=28%  Similarity=0.334  Sum_probs=76.8

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CH
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NF  204 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~  204 (223)
                      ++.+|||||||+|.++..++   .+|+|+|+++            .++.++.+|+..+|+++++||+|++..+++|+ ++
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  132 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEP  132 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccCH
Confidence            67899999999999999887   5799999996            46789999999999999999999999999999 88


Q ss_pred             HHHHHHHHHccCCCCEEEc
Q 027441          205 PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       205 ~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..++.++.++|+|||.|+|
T Consensus       133 ~~~l~~~~~~L~pgG~l~i  151 (242)
T 3l8d_A          133 LRALNEIKRVLKSDGYACI  151 (242)
T ss_dssp             HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCeEEEE
Confidence            9999999999999999985

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.70  E-value=5.2e-17  Score=134.62  Aligned_cols=94  Identities=24%  Similarity=0.342  Sum_probs=81.3

Q ss_pred             HHHHHHHh----ccCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLK----DHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~----~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..+.+.+.    ...++.+|||||||+|.++..++   .+|+|+|+|+              .++.+..+|+..+|++++
T Consensus        24 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~  103 (263)
T 2yqz_A           24 GQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDE  103 (263)
T ss_dssp             HHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTT
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCC
Confidence            44555552    23467899999999999998887   5799999996              367889999999999999


Q ss_pred             ceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++..++||+ ++..++.++.++|+|||.|++
T Consensus       104 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~  139 (263)
T 2yqz_A          104 SVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLE  139 (263)
T ss_dssp             CEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEE
Confidence            99999999999999 999999999999999999975

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.70  E-value=1.7e-17  Score=138.52  Aligned_cols=93  Identities=24%  Similarity=0.307  Sum_probs=80.9

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      .+.+.+.+.. .++.+|||||||+|.++..++   .+|+|+|+|+         .++.++.+|+..+|+++++||+|++.
T Consensus        23 ~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  101 (261)
T 3ege_A           23 VNAIINLLNL-PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISI  101 (261)
T ss_dssp             HHHHHHHHCC-CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEE
T ss_pred             HHHHHHHhCC-CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEc
Confidence            3455555543 367899999999999999987   5899999997         36789999999999999999999999


Q ss_pred             ccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+++|+ ++..++.++.++|+ ||.++|
T Consensus       102 ~~l~~~~~~~~~l~~~~~~Lk-gG~~~~  128 (261)
T 3ege_A          102 LAIHHFSHLEKSFQEMQRIIR-DGTIVL  128 (261)
T ss_dssp             SCGGGCSSHHHHHHHHHHHBC-SSCEEE
T ss_pred             chHhhccCHHHHHHHHHHHhC-CcEEEE
Confidence            999999 99999999999999 997664

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.69  E-value=3.2e-17  Score=131.83  Aligned_cols=91  Identities=20%  Similarity=0.279  Sum_probs=78.2

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      .+++.+... + .+|||||||+|.++..++    .+|+|+|+++                .++.++.+|+..+|+++++|
T Consensus        35 ~~~~~~~~~-~-~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  112 (219)
T 3dlc_A           35 NIINRFGIT-A-GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYA  112 (219)
T ss_dssp             HHHHHHCCC-E-EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCE
T ss_pred             HHHHhcCCC-C-CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccc
Confidence            444444322 3 399999999999988886    3799999996                35789999999999999999


Q ss_pred             eEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++..+++|+ ++..++.++.++|+|||.|+|
T Consensus       113 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~  146 (219)
T 3dlc_A          113 DLIVSRGSVFFWEDVATAFREIYRILKSGGKTYI  146 (219)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             cEEEECchHhhccCHHHHHHHHHHhCCCCCEEEE
Confidence            999999999999 999999999999999999875

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.69  E-value=1.1e-17  Score=138.57  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=76.7

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-C
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-N  203 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d  203 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+++            .++.++.+|+..+|+++++||+|++..+++|+ +
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  123 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS  123 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh
Confidence            67899999999999998887    3899999996            46789999999999989999999999999999 9


Q ss_pred             HHHHHHHHHHccCCCCEEEc
Q 027441          204 FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +..+|.++.++|+|||.|+|
T Consensus       124 ~~~~l~~~~~~LkpgG~l~~  143 (253)
T 3g5l_A          124 FDDICKKVYINLKSSGSFIF  143 (253)
T ss_dssp             HHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEE
Confidence            99999999999999999985

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.69  E-value=8.1e-17  Score=132.66  Aligned_cols=92  Identities=16%  Similarity=0.247  Sum_probs=81.1

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      .+++.+... ++.+|||||||+|.++..++   .+|+|+|+++               .++.+..+|+..+|+++++||+
T Consensus        12 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~   90 (239)
T 1xxl_A           12 LMIKTAECR-AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI   90 (239)
T ss_dssp             HHHHHHTCC-TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred             hHHHHhCcC-CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEE
Confidence            344555544 78999999999999999887   5799999996               3578899999999999999999


Q ss_pred             EEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..+++|+ ++..++.++.++|+|||.|+|
T Consensus        91 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  122 (239)
T 1xxl_A           91 ITCRYAAHHFSDVRKAVREVARVLKQDGRFLL  122 (239)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCchhhccCHHHHHHHHHHHcCCCcEEEE
Confidence            9999999999 999999999999999999975

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.68  E-value=9.8e-17  Score=135.89  Aligned_cols=94  Identities=20%  Similarity=0.193  Sum_probs=82.0

Q ss_pred             HHHHHHHh---ccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCC
Q 027441          130 NIIVKWLK---DHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLN  186 (223)
Q Consensus       130 ~~i~~~l~---~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~  186 (223)
                      +.++..+.   ...++.+|||||||+|.++..++    .+|+|+|+++                .++.++.+|+..+|++
T Consensus        68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  147 (297)
T 2o57_A           68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE  147 (297)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC
T ss_pred             HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCC
Confidence            45666661   33477899999999999988876    4899999996                3578999999999999


Q ss_pred             CCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++||+|++..+++|+ ++..+|.++.|+|+|||.|+|
T Consensus       148 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  185 (297)
T 2o57_A          148 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI  185 (297)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEE
Confidence            9999999999999999 899999999999999999985

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.68  E-value=6.5e-17  Score=136.08  Aligned_cols=92  Identities=18%  Similarity=0.270  Sum_probs=81.1

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      +.+++.+... ++.+|||||||+|.++..++   .+|+|+|+|+          .++.+..+|+..+|+ +++||+|++.
T Consensus        47 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  124 (279)
T 3ccf_A           47 EDLLQLLNPQ-PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSN  124 (279)
T ss_dssp             CHHHHHHCCC-TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEE
T ss_pred             HHHHHHhCCC-CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEc
Confidence            4566666543 67899999999999998887   5899999997          478899999999997 5899999999


Q ss_pred             ccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+++|+ ++..++.++.++|+|||.|+|
T Consensus       125 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~  152 (279)
T 3ccf_A          125 AMLHWVKEPEAAIASIHQALKSGGRFVA  152 (279)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhhCcCHHHHHHHHHHhcCCCcEEEE
Confidence            999998 999999999999999999975

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.68  E-value=2.3e-17  Score=135.77  Aligned_cols=90  Identities=14%  Similarity=0.183  Sum_probs=76.6

Q ss_pred             HHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------CCCcEEEccCCCC--CCCCCceeEEEEcccccC
Q 027441          134 KWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------NDPSVIACDMSNT--PLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       134 ~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l~~  201 (223)
                      ..+....++.+|||||||+|.++..++   .+|+|+|+|+       .++.++.+|+..+  |+++++||+|++..+++|
T Consensus        34 ~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~  113 (240)
T 3dli_A           34 RYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEH  113 (240)
T ss_dssp             GGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred             HHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence            334444467899999999999998887   4799999997       4577888888775  888999999999999999


Q ss_pred             C---CHHHHHHHHHHccCCCCEEEc
Q 027441          202 I---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +   +...++.++.++|+|||.|+|
T Consensus       114 ~~~~~~~~~l~~~~~~LkpgG~l~~  138 (240)
T 3dli_A          114 LDPERLFELLSLCYSKMKYSSYIVI  138 (240)
T ss_dssp             SCGGGHHHHHHHHHHHBCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHHHcCCCcEEEE
Confidence            9   347999999999999999985

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.68  E-value=7.1e-17  Score=133.56  Aligned_cols=92  Identities=21%  Similarity=0.185  Sum_probs=79.5

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      ..++..+.. .++.+|||||||+|.++..++    .+|+|+|+++                .++.+..+|+..+++ +++
T Consensus        26 ~~l~~~~~~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  103 (256)
T 1nkv_A           26 ATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEK  103 (256)
T ss_dssp             HHHHHHTCC-CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSC
T ss_pred             HHHHHhcCC-CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCC
Confidence            445555443 377899999999999888776    4899999996                358899999999988 889


Q ss_pred             eeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++..+++|+ ++..+|.++.++|+|||.|+|
T Consensus       104 fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~  138 (256)
T 1nkv_A          104 CDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLI  138 (256)
T ss_dssp             EEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEE
T ss_pred             CCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEE
Confidence            9999999999999 899999999999999999985

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.68  E-value=1.1e-16  Score=133.75  Aligned_cols=83  Identities=25%  Similarity=0.336  Sum_probs=76.2

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+|+                .++.+..+|+..+|+++++||+|++..+++
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  140 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLH  140 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhh
Confidence            67899999999999988876    4899999996                257899999999999999999999999999


Q ss_pred             CC-CHHHHHHHHHHccCCCCEEEc
Q 027441          201 GI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+ ++..+|.++.++|+|||.|+|
T Consensus       141 ~~~~~~~~l~~~~~~L~pgG~l~i  164 (273)
T 3bus_A          141 HMPDRGRALREMARVLRPGGTVAI  164 (273)
T ss_dssp             TSSCHHHHHHHHHTTEEEEEEEEE
T ss_pred             hCCCHHHHHHHHHHHcCCCeEEEE
Confidence            99 899999999999999999985

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.67  E-value=1.4e-16  Score=136.34  Aligned_cols=93  Identities=22%  Similarity=0.346  Sum_probs=81.1

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      .+++.+....++.+|||||||+|.++..++    .+|+|+|+++                .++.++.+|+..+|+++++|
T Consensus       107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  186 (312)
T 3vc1_A          107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAV  186 (312)
T ss_dssp             HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred             HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCE
Confidence            344444433467899999999999988876    4799999996                25889999999999999999


Q ss_pred             eEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++..+++|+++..+|.++.++|+|||.|+|
T Consensus       187 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~  219 (312)
T 3vc1_A          187 TASWNNESTMYVDLHDLFSEHSRFLKVGGRYVT  219 (312)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEECCchhhCCHHHHHHHHHHHcCCCcEEEE
Confidence            999999999999999999999999999999985

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.67  E-value=4.1e-17  Score=131.73  Aligned_cols=81  Identities=10%  Similarity=0.106  Sum_probs=71.2

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC----------C-----------------CCcEEEccCCCCCCCC-Cc
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------N-----------------DPSVIACDMSNTPLNS-SS  189 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~-----------------~~~~~~~d~~~lp~~~-~s  189 (223)
                      ++.+|||+|||+|..+..|+   .+|+|+|+|+          .                 ++.++++|+..+|+.+ ++
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~  101 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH  101 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence            67899999999999999887   4899999996          1                 4678999999999875 89


Q ss_pred             eeEEEEcccccCCCH---HHHHHHHHHccCCCCEE
Q 027441          190 VDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEE  221 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~l  221 (223)
                      ||+|++..+++|++.   ..++.++.|+|+|||.+
T Consensus       102 fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~  136 (203)
T 1pjz_A          102 CAAFYDRAAMIALPADMRERYVQHLEALMPQACSG  136 (203)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEE
T ss_pred             EEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence            999999999999843   47999999999999983

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.67  E-value=6.1e-17  Score=130.99  Aligned_cols=93  Identities=20%  Similarity=0.356  Sum_probs=81.7

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..++..+... ++.+|||||||+|.++..++      .+|+|+|+++               .++.++.+|+..++++++
T Consensus        27 ~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEFGLK-EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHHTCC-TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred             HHHHHHhCCC-CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence            4566666544 67899999999999888775      4799999996               368899999999999999


Q ss_pred             ceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++..+++|+ ++..++.++.++|+|||.|+|
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i  141 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAI  141 (219)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEE
Confidence            99999999999999 899999999999999999985

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.67  E-value=9.9e-17  Score=131.13  Aligned_cols=93  Identities=18%  Similarity=0.175  Sum_probs=78.1

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCCCCCCCcee
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      ..+...+....++.+|||||||+|.++..++     .+|+|+|+++             .++.++.+|+..++++ ++||
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD  111 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYD  111 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEE
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCce
Confidence            3444555434467899999999999988876     3799999997             2678999999999987 8999


Q ss_pred             EEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++..+++|++.+   .++.++.++|+|||.|+|
T Consensus       112 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~  146 (234)
T 3dtn_A          112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFIN  146 (234)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            99999999999544   599999999999999985

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.4e-16  Score=135.32  Aligned_cols=83  Identities=16%  Similarity=0.267  Sum_probs=75.6

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC-----------------CCCcEEEccCCCCCCCC------Ccee
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS-----------------NDPSVIACDMSNTPLNS------SSVD  191 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-----------------~~~~~~~~d~~~lp~~~------~sfD  191 (223)
                      ++.+|||||||+|.++..++      .+|+|+|+|+                 .++.++++|+..+++.+      ++||
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  115 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID  115 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence            67899999999999888876      3799999986                 26789999999998877      8999


Q ss_pred             EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++..++||+++..++.++.++|+|||.|+|
T Consensus       116 ~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          116 MITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            99999999999999999999999999999975

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.66  E-value=4.2e-16  Score=126.62  Aligned_cols=82  Identities=26%  Similarity=0.318  Sum_probs=75.7

Q ss_pred             CCCeEEEECCcchHHHHHhcCceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHHHHH
Q 027441          141 PSLVIADFGCGDARLAKSVKNKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEA  211 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~  211 (223)
                      ++.+|||||||+|.++..++.. +|+|+++        .++.++.+|+..+|+++++||+|++..+++|+ ++..+|.++
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~  125 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEA  125 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHHHHHH
Confidence            4789999999999999999877 9999997        36788999999999988999999999999999 899999999


Q ss_pred             HHccCCCCEEEc
Q 027441          212 QRVLKPRGEEQI  223 (223)
Q Consensus       212 ~rvLkpgG~lvi  223 (223)
                      .++|+|||.|+|
T Consensus       126 ~~~L~pgG~l~i  137 (219)
T 1vlm_A          126 YRILKKGGYLIV  137 (219)
T ss_dssp             HHHEEEEEEEEE
T ss_pred             HHHcCCCcEEEE
Confidence            999999999985

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.66  E-value=1.7e-16  Score=130.08  Aligned_cols=93  Identities=22%  Similarity=0.328  Sum_probs=80.5

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---C-ceEEEecCC------------CCCcEEEccCCCCCCCCCceeEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---N-KVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVA  193 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~-~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~V  193 (223)
                      ..+...+... ++.+|||||||+|.++..++   . +|+|+|+++            .++.+..+|+..+++++++||+|
T Consensus        33 ~~l~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  111 (243)
T 3bkw_A           33 PALRAMLPEV-GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA  111 (243)
T ss_dssp             HHHHHHSCCC-TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred             HHHHHhcccc-CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence            3455555443 67899999999999988887   3 899999996            25788899999999888999999


Q ss_pred             EEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..+++|+ ++..+|.++.++|+|||.|+|
T Consensus       112 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~  142 (243)
T 3bkw_A          112 YSSLALHYVEDVARLFRTVHQALSPGGHFVF  142 (243)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEeccccccchHHHHHHHHHHhcCcCcEEEE
Confidence            999999999 899999999999999999985

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.65  E-value=1.3e-16  Score=134.44  Aligned_cols=83  Identities=24%  Similarity=0.356  Sum_probs=75.2

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCC-CCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTP-LNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||||||+|.++..++   .+|+|+|+++                .++.++.+|+..++ +.+++||+|++..+++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  147 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE  147 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence            45799999999999999887   5899999996                35678999999887 7889999999999999


Q ss_pred             CC-CHHHHHHHHHHccCCCCEEEc
Q 027441          201 GI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+ ++..+|.++.++|+|||.|+|
T Consensus       148 ~~~~~~~~l~~~~~~LkpgG~l~~  171 (285)
T 4htf_A          148 WVADPRSVLQTLWSVLRPGGVLSL  171 (285)
T ss_dssp             GCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccCHHHHHHHHHHHcCCCeEEEE
Confidence            99 899999999999999999985

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.65  E-value=1.5e-16  Score=133.25  Aligned_cols=84  Identities=21%  Similarity=0.418  Sum_probs=76.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||||||+|.++..++     .+|+|+|+++               .++.++.+|+..+|+++++||+|++..++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  115 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL  115 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence            477899999999999988886     4799999996               36788999999999999999999999999


Q ss_pred             cCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+ ++..++.++.++|+|||.|+|
T Consensus       116 ~~~~~~~~~l~~~~~~L~pgG~l~~  140 (276)
T 3mgg_A          116 EHLQSPEEALKSLKKVLKPGGTITV  140 (276)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhcCCHHHHHHHHHHHcCCCcEEEE
Confidence            999 899999999999999999985

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.65  E-value=3.8e-16  Score=126.53  Aligned_cols=93  Identities=15%  Similarity=0.191  Sum_probs=79.3

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------C----------CCcEEEccCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------N----------DPSVIACDMSNTP  184 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~----------~~~~~~~d~~~lp  184 (223)
                      +.+.+.+... ++.+|||||||+|.++..++     .+|+|+|+++          .          ++.++.+|+..++
T Consensus        19 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (219)
T 3jwg_A           19 GTVVAVLKSV-NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD   97 (219)
T ss_dssp             HHHHHHHHHT-TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred             HHHHHHHhhc-CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence            4556666554 67899999999999999887     3799999997          1          7889999998888


Q ss_pred             CCCCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          185 LNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 ~~~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.+++||+|++..+++|++.   ..++.++.++|+|||+|++
T Consensus        98 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~  139 (219)
T 3jwg_A           98 KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS  139 (219)
T ss_dssp             GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence            88899999999999999944   4999999999999997763

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.65  E-value=1.3e-16  Score=132.30  Aligned_cols=84  Identities=19%  Similarity=0.239  Sum_probs=76.0

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                      .++.+|||||||+|.++..++    .+|+|+|+|+             .++.++.+|+..+|+++++||+|++..+++|+
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILAL  133 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhc
Confidence            367899999999999988876    4799999997             36788999999999999999999999999999


Q ss_pred             ---CHHHHHHHHHHccCCCCEEEc
Q 027441          203 ---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 ---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         ++..++.++.++|+|||.|+|
T Consensus       134 ~~~~~~~~l~~~~~~L~pgG~l~~  157 (266)
T 3ujc_A          134 SLENKNKLFQKCYKWLKPTGTLLI  157 (266)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHcCCCCEEEE
Confidence               677999999999999999985

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.65  E-value=1.5e-16  Score=128.17  Aligned_cols=93  Identities=19%  Similarity=0.203  Sum_probs=80.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      ..+...+....++.+|||||||+|.++..++   .+|+|+|+++         .++.+..+|+..++ .+++||+|++..
T Consensus        32 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~  110 (211)
T 3e23_A           32 ATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHA  110 (211)
T ss_dssp             HHHHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECS
T ss_pred             HHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecC
Confidence            3455555555577899999999999999887   4799999997         26788899999888 789999999999


Q ss_pred             cccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++|+   ++..+|.++.++|+|||.|+|
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~  139 (211)
T 3e23_A          111 CLLHVPRDELADVLKLIWRALKPGGLFYA  139 (211)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            99999   566999999999999999985

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.65  E-value=2.4e-16  Score=131.79  Aligned_cols=82  Identities=17%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC---------C-----------------------CCcEEEccCCCCCC
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------N-----------------------DPSVIACDMSNTPL  185 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------~-----------------------~~~~~~~d~~~lp~  185 (223)
                      ++.+|||+|||+|..+..|+   .+|+|+|+|+         .                       ++.++++|+..+++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~  147 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR  147 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence            67899999999999999998   4799999996         1                       35688999999987


Q ss_pred             CC-CceeEEEEcccccCC---CHHHHHHHHHHccCCCCEEE
Q 027441          186 NS-SSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       186 ~~-~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lv  222 (223)
                      .+ ++||+|++..+++|+   +...++.++.++|+|||.|+
T Consensus       148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~  188 (252)
T 2gb4_A          148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYL  188 (252)
T ss_dssp             GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred             ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            64 899999999999998   34589999999999999985

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.65  E-value=2.5e-16  Score=133.12  Aligned_cols=93  Identities=20%  Similarity=0.280  Sum_probs=79.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC--------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      ..+.+.+....++.+|||||||+|.++..++      .+|+|+|+++              .++.+.++|+..+|+ +++
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~   89 (284)
T 3gu3_A           11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDK   89 (284)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSC
T ss_pred             HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCC
Confidence            3444444444477899999999999999886      3799999997              267889999999988 469


Q ss_pred             eeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++..+++|+ ++..++.++.++|+|||+|++
T Consensus        90 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  124 (284)
T 3gu3_A           90 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC  124 (284)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEE
T ss_pred             eeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEE
Confidence            9999999999999 999999999999999999984

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.65  E-value=3.4e-16  Score=126.45  Aligned_cols=83  Identities=14%  Similarity=0.251  Sum_probs=73.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-  202 (223)
                      .++.+|||||||+|.++..++   .+|+|+|+++             .++.++.+|+..++ ++++||+|++..+++|+ 
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~  128 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLE  128 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSS
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCC
Confidence            366899999999999999988   4799999996             35789999999988 67899999999999999 


Q ss_pred             CH---HHHHHHHHHccCCCCEEEc
Q 027441          203 NF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++   ..++.++.++|+|||.|+|
T Consensus       129 ~~~~~~~~l~~~~~~L~pgG~l~~  152 (216)
T 3ofk_A          129 DMTQMRTAIDNMVKMLAPGGHLVF  152 (216)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEE
Confidence            56   4779999999999999985

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.65  E-value=2.9e-16  Score=126.43  Aligned_cols=83  Identities=19%  Similarity=0.306  Sum_probs=76.7

Q ss_pred             CCCeEEEECCcchHHHHHhcC-ceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHH
Q 027441          141 PSLVIADFGCGDARLAKSVKN-KVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYL  208 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la~-~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l  208 (223)
                      ++.+|||||||+|.++..+.. +|+|+|+++          .++.++.+|+..+|+++++||+|++..+++|+ ++..++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l  115 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVL  115 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHCCCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHH
T ss_pred             CCCeEEEECCCCCHhHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHH
Confidence            678999999999999998865 899999997          37889999999999999999999999999999 899999


Q ss_pred             HHHHHccCCCCEEEc
Q 027441          209 QEAQRVLKPRGEEQI  223 (223)
Q Consensus       209 ~e~~rvLkpgG~lvi  223 (223)
                      .++.++|+|||.|+|
T Consensus       116 ~~~~~~L~pgG~l~i  130 (211)
T 2gs9_A          116 LEARRVLRPGGALVV  130 (211)
T ss_dssp             HHHHHHEEEEEEEEE
T ss_pred             HHHHHHcCCCCEEEE
Confidence            999999999999985

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.64  E-value=2.9e-16  Score=129.94  Aligned_cols=82  Identities=15%  Similarity=0.165  Sum_probs=75.0

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CH
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NF  204 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~  204 (223)
                      ++.+|||||||+|.++..++     .+|+|+|+++          .++.+..+|+..++ ++++||+|++..++||+ ++
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~  111 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVPDH  111 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTTH
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCCCH
Confidence            66899999999999988776     4799999996          47889999999988 78899999999999999 99


Q ss_pred             HHHHHHHHHccCCCCEEEc
Q 027441          205 PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       205 ~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+|.++.++|+|||.|+|
T Consensus       112 ~~~l~~~~~~L~pgG~l~~  130 (259)
T 2p35_A          112 LAVLSQLMDQLESGGVLAV  130 (259)
T ss_dssp             HHHHHHHGGGEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCeEEEE
Confidence            9999999999999999985

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.64  E-value=5.8e-16  Score=124.18  Aligned_cols=94  Identities=17%  Similarity=0.289  Sum_probs=78.6

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHH-HHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCcee
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLA-KSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a-~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      ..++..+....++.+|||+|||+|.++ ..++   .+|+|+|+++              .++.+..+|+..+|+++++||
T Consensus        12 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD   91 (209)
T 2p8j_A           12 YRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMS   91 (209)
T ss_dssp             HHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEE
T ss_pred             HHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCcee
Confidence            345555555557789999999999873 3333   5899999996              367899999999999899999


Q ss_pred             EEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++..+++|+   ++..++.++.++|+|||.|++
T Consensus        92 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~  126 (209)
T 2p8j_A           92 FVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACI  126 (209)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            99999999998   566999999999999999985

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.64  E-value=7.2e-16  Score=128.34  Aligned_cols=92  Identities=15%  Similarity=0.255  Sum_probs=77.8

Q ss_pred             HHHHHHhcc-CCCCeEEEECCcchHHHHHhc---CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          131 IIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       131 ~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      .+.+.+... +++.+|||||||+|.++..++   .+|+|+|+++          .++.++.+|+..+++ +++||+|++.
T Consensus        39 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  117 (263)
T 3pfg_A           39 DLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCM  117 (263)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEEC
T ss_pred             HHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEc
Confidence            344444332 356899999999999999988   4799999997          478899999999988 7899999999


Q ss_pred             c-cccCC----CHHHHHHHHHHccCCCCEEEc
Q 027441          197 L-SLMGI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~-~l~~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      . +++|+    +...+|.++.++|+|||.|+|
T Consensus       118 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i  149 (263)
T 3pfg_A          118 FSSIGHLAGQAELDAALERFAAHVLPDGVVVV  149 (263)
T ss_dssp             TTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CchhhhcCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            8 99999    445889999999999999986

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.64  E-value=5.2e-16  Score=125.67  Aligned_cols=93  Identities=16%  Similarity=0.207  Sum_probs=78.9

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------C----------CCcEEEccCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------N----------DPSVIACDMSNTP  184 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~----------~~~~~~~d~~~lp  184 (223)
                      +.+.+.+... ++.+|||||||+|.++..++     .+|+|+|+++          .          ++.++.+|+...+
T Consensus        19 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (217)
T 3jwh_A           19 NGVVAALKQS-NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD   97 (217)
T ss_dssp             HHHHHHHHHT-TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred             HHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence            4556666554 67899999999999999887     3899999996          1          6889999998888


Q ss_pred             CCCCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          185 LNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 ~~~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.+++||+|++..+++|++.   ..++.++.++|+|||+|++
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~  139 (217)
T 3jwh_A           98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVT  139 (217)
T ss_dssp             GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            77889999999999999943   5999999999999998764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.64  E-value=3e-16  Score=132.56  Aligned_cols=93  Identities=15%  Similarity=0.177  Sum_probs=79.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------------CCCcEEEccCCCCC---
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------------NDPSVIACDMSNTP---  184 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------------~~~~~~~~d~~~lp---  184 (223)
                      +.+...+... ++.+|||||||+|.++..++   .+|+|+|+|+                   .++.+..+|+..+|   
T Consensus        47 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  125 (293)
T 3thr_A           47 AWLLGLLRQH-GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV  125 (293)
T ss_dssp             HHHHHHHHHT-TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred             HHHHHHhccc-CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence            4555655544 67899999999999999887   4899999996                   23456788888887   


Q ss_pred             CCCCceeEEEEc-ccccCC-C-------HHHHHHHHHHccCCCCEEEc
Q 027441          185 LNSSSVDVAVFC-LSLMGI-N-------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 ~~~~sfD~Vi~~-~~l~~~-d-------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++++||+|+|. .+++|+ +       +..++.++.++|+|||+|+|
T Consensus       126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  173 (293)
T 3thr_A          126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  173 (293)
T ss_dssp             CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            788999999998 899999 7       88999999999999999985

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.62  E-value=4.1e-16  Score=121.36  Aligned_cols=89  Identities=22%  Similarity=0.378  Sum_probs=76.8

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      .+++.+... ++.+|||||||+|.++..++   .+|+|+|+++          .++.+..+|   +++++++||+|++..
T Consensus         8 ~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~   83 (170)
T 3i9f_A            8 EYLPNIFEG-KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFAN   83 (170)
T ss_dssp             TTHHHHHSS-CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEES
T ss_pred             HHHHhcCcC-CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEcc
Confidence            344555443 67899999999999999887   4799999997          467888888   778889999999999


Q ss_pred             cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++|+ ++..++.++.++|+|||.|+|
T Consensus        84 ~l~~~~~~~~~l~~~~~~L~pgG~l~~  110 (170)
T 3i9f_A           84 SFHDMDDKQHVISEVKRILKDDGRVII  110 (170)
T ss_dssp             CSTTCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhcccCHHHHHHHHHHhcCCCCEEEE
Confidence            99999 999999999999999999985

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.62  E-value=4.9e-16  Score=128.20  Aligned_cols=83  Identities=19%  Similarity=0.284  Sum_probs=74.1

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-  202 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+++             .++.++.+|+..+++++++||+|++..+++|+ 
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  172 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLT  172 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSC
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCC
Confidence            67899999999999988876    4699999996             25778899999999988999999999999999 


Q ss_pred             --CHHHHHHHHHHccCCCCEEEc
Q 027441          203 --NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 --d~~~~l~e~~rvLkpgG~lvi  223 (223)
                        ++..+|.++.++|+|||.|+|
T Consensus       173 ~~~~~~~l~~~~~~LkpgG~l~i  195 (254)
T 1xtp_A          173 DADFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEE
Confidence              367999999999999999986

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.61  E-value=8e-16  Score=125.68  Aligned_cols=83  Identities=16%  Similarity=0.233  Sum_probs=72.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEcc-cccCC-C-
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCL-SLMGI-N-  203 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~-~l~~~-d-  203 (223)
                      .++.+|||||||+|.++..++   .+|+|+|+++          .++.++.+|+..+++ +++||+|+|.. +++|+ + 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~  117 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTT  117 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSH
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCH
Confidence            367899999999999998887   5799999997          468899999999887 78999999655 89988 3 


Q ss_pred             --HHHHHHHHHHccCCCCEEEc
Q 027441          204 --FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 --~~~~l~e~~rvLkpgG~lvi  223 (223)
                        ...+|.++.++|+|||.|+|
T Consensus       118 ~~~~~~l~~~~~~L~pgG~l~~  139 (239)
T 3bxo_A          118 EELGAAVASFAEHLEPGGVVVV  139 (239)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCeEEEE
Confidence              45899999999999999985

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.61  E-value=1.3e-15  Score=124.73  Aligned_cols=93  Identities=19%  Similarity=0.208  Sum_probs=76.5

Q ss_pred             HHHHHHHhcc-CCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      ..+..++... .+..+|||||||+|.++..++   .+|+|+|+++                .++.++.+|+..++ ++.+
T Consensus        54 ~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~  132 (235)
T 3lcc_A           54 PLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTEL  132 (235)
T ss_dssp             HHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSC
T ss_pred             HHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCC
Confidence            3455555432 244699999999999999988   4799999996                23778999999887 4569


Q ss_pred             eeEEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++..+++|+   ++..++.++.++|+|||.|++
T Consensus       133 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~  169 (235)
T 3lcc_A          133 FDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELIT  169 (235)
T ss_dssp             EEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEE
Confidence            9999999999999   567999999999999999985

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.61  E-value=6.7e-16  Score=125.52  Aligned_cols=83  Identities=25%  Similarity=0.338  Sum_probs=75.0

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC------------C--------CCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------N--------DPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------~--------~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      ++.+|||||||+|.++..++   .+|+|+|+++            .        ++.+..+|+..+++++++||+|++..
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  109 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQA  109 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcc
Confidence            67899999999999999887   5899999996            1        35788999999999999999999999


Q ss_pred             cccCC-CHH---HHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI-NFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                      +++|+ ++.   .++.++.++|+|||.|+|
T Consensus       110 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~  139 (235)
T 3sm3_A          110 FLTSVPDPKERSRIIKEVFRVLKPGAYLYL  139 (235)
T ss_dssp             CGGGCCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhcCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            99999 777   899999999999999985

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.61  E-value=1.3e-15  Score=120.88  Aligned_cols=92  Identities=22%  Similarity=0.320  Sum_probs=78.8

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCcee
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      ..+.+.+... ++.+|||||||+|.++..++   .+|+|+|+++               .++.+..+|+..+++ +++||
T Consensus        22 ~~l~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D   99 (199)
T 2xvm_A           22 SEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYD   99 (199)
T ss_dssp             HHHHHHTTTS-CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEE
T ss_pred             HHHHHHhhcc-CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCce
Confidence            3455666544 66899999999999998887   4799999997               267889999999888 88999


Q ss_pred             EEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++..+++|+   ++..++.++.++|+|||.|+|
T Consensus       100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~  134 (199)
T 2xvm_A          100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  134 (199)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            99999999998   567999999999999999764

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.61  E-value=1.4e-15  Score=123.35  Aligned_cols=83  Identities=20%  Similarity=0.356  Sum_probs=73.1

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEccccc--C
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM--G  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~--~  201 (223)
                      ++.+|||||||+|.++..++   .+|+|+|+++              .++.++.+|+..+++++++||+|++..+++  |
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~  117 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE  117 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence            57899999999999998887   4899999996              467899999999988889999999999954  4


Q ss_pred             C-CHHHHHHHHHHccCCCCEEEc
Q 027441          202 I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      . ++..++.++.++|+|||.|++
T Consensus       118 ~~~~~~~l~~~~~~L~~gG~l~~  140 (227)
T 1ve3_A          118 PLELNQVFKEVRRVLKPSGKFIM  140 (227)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEE
Confidence            4 677999999999999999975

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.60  E-value=4.1e-16  Score=128.34  Aligned_cols=83  Identities=19%  Similarity=0.314  Sum_probs=72.9

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+++               .++.++.+|+..+++++++||+|++..+++|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            57899999999999999876    3799999996               1367889999999888889999999999999


Q ss_pred             C-C--HHHHHHHHHHccCCCCEEEc
Q 027441          202 I-N--FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~-d--~~~~l~e~~rvLkpgG~lvi  223 (223)
                      + +  ...+|.++.++|+|||.|+|
T Consensus       159 ~~~~~~~~~l~~~~~~LkpgG~l~i  183 (241)
T 2ex4_A          159 LTDQHLAEFLRRCKGSLRPNGIIVI  183 (241)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            9 4  34899999999999999985

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.60  E-value=6.9e-16  Score=124.67  Aligned_cols=93  Identities=16%  Similarity=0.239  Sum_probs=76.8

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------CCCcEEEccCCCC---CCCC-CceeEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------NDPSVIACDMSNT---PLNS-SSVDVA  193 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------~~~~~~~~d~~~l---p~~~-~sfD~V  193 (223)
                      ..++..+... ++.+|||||||+|.++..++   .+|+|+|+++         ..+.+..+|+..+   ++.. .+||+|
T Consensus        42 ~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v  120 (227)
T 3e8s_A           42 QAILLAILGR-QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLI  120 (227)
T ss_dssp             HHHHHHHHHT-CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred             HHHHHHhhcC-CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEE
Confidence            3456666655 56999999999999999887   4799999997         4567888877665   5444 459999


Q ss_pred             EEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..++++.++..++.++.++|+|||.|+|
T Consensus       121 ~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~  150 (227)
T 3e8s_A          121 CANFALLHQDIIELLSAMRTLLVPGGALVI  150 (227)
T ss_dssp             EEESCCCSSCCHHHHHHHHHTEEEEEEEEE
T ss_pred             EECchhhhhhHHHHHHHHHHHhCCCeEEEE
Confidence            999999955999999999999999999985

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.60  E-value=2.2e-15  Score=123.22  Aligned_cols=93  Identities=23%  Similarity=0.359  Sum_probs=78.3

Q ss_pred             HHHHHHHhcc-CCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCcee
Q 027441          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      +.+...+... .++.+|||||||+|.++..++   .+|+|+|+++              .++.++.+|+..++++ ++||
T Consensus        25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD  103 (246)
T 1y8c_A           25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFD  103 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEE
T ss_pred             HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCce
Confidence            4455555543 366899999999999999887   4799999996              1688999999988877 8899


Q ss_pred             EEEEcc-cccCC----CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCL-SLMGI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~-~l~~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++.. +++|+    ++..+|.++.++|+|||.|+|
T Consensus       104 ~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~  140 (246)
T 1y8c_A          104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            999998 99998    456999999999999999985

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.59  E-value=1.4e-15  Score=123.13  Aligned_cols=92  Identities=17%  Similarity=0.280  Sum_probs=77.9

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------CCCcEEEccCCC--CCCCCCceeEEEEc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------NDPSVIACDMSN--TPLNSSSVDVAVFC  196 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------~~~~~~~~d~~~--lp~~~~sfD~Vi~~  196 (223)
                      ..+++.+.  .++.+|||||||+|.++..++   .+|+|+|+++        ....+..+|+..  .++++++||+|++.
T Consensus        23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~  100 (230)
T 3cc8_A           23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFG  100 (230)
T ss_dssp             HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred             HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEEC
Confidence            34455444  367899999999999998887   4799999997        234678899876  67778999999999


Q ss_pred             ccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+++|+ ++..++.++.++|+|||.|++
T Consensus       101 ~~l~~~~~~~~~l~~~~~~L~~gG~l~~  128 (230)
T 3cc8_A          101 DVLEHLFDPWAVIEKVKPYIKQNGVILA  128 (230)
T ss_dssp             SCGGGSSCHHHHHHHTGGGEEEEEEEEE
T ss_pred             ChhhhcCCHHHHHHHHHHHcCCCCEEEE
Confidence            999999 899999999999999999985

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.59  E-value=2.4e-15  Score=126.35  Aligned_cols=116  Identities=9%  Similarity=0.053  Sum_probs=80.8

Q ss_pred             cChHHHHHHHHhHHhhhc--cCCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC--------
Q 027441          105 ENPALFDMYHSGYQEQMS--HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------  171 (223)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~--~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~--------  171 (223)
                      ..+..|+.....|.....  .|+ .....++..+... ++.+|||||||+|.++..|+   .+|+|+|+|+.        
T Consensus         9 s~a~~wd~~a~~f~~~~~~~~~~-~~~~~il~~l~l~-~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~   86 (261)
T 3iv6_A            9 SKAEAWELIGNQFWTIGRVAARP-SDRENDIFLENIV-PGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEA   86 (261)
T ss_dssp             TTHHHHHTTTTHHHHTSCGGGSC-CHHHHHHHTTTCC-TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHhhccccH-HHHHHHHHhcCCC-CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHH
Confidence            344445544444443322  133 2334566655443 77899999999999999887   58999999971        


Q ss_pred             -CCcEEEccCCCCCC-----CCCceeEEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          172 -DPSVIACDMSNTPL-----NSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       172 -~~~~~~~d~~~lp~-----~~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       ...++.+++..++.     .+++||+|++..++||+   +...++.++.++| |||.|++
T Consensus        87 ~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~l  146 (261)
T 3iv6_A           87 LADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRA  146 (261)
T ss_dssp             TSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred             HHhccceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEE
Confidence             11144555555544     25789999999999998   4457999999999 9999975

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.59  E-value=2.1e-15  Score=133.02  Aligned_cols=83  Identities=24%  Similarity=0.310  Sum_probs=75.1

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC-----------------------CCCcEEEccCCCC------CC
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS-----------------------NDPSVIACDMSNT------PL  185 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-----------------------~~~~~~~~d~~~l------p~  185 (223)
                      ++.+|||||||+|.++..++      .+|+|+|+++                       .++.++.+|+..+      |+
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            67899999999999888775      3799999986                       2678899999887      89


Q ss_pred             CCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          186 NSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 ~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++++||+|++..+++|+ ++..+|.++.|+|+|||+|+|
T Consensus       163 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i  201 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYF  201 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEE
Confidence            99999999999999999 999999999999999999985

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.58  E-value=2.4e-15  Score=127.97  Aligned_cols=81  Identities=15%  Similarity=0.211  Sum_probs=71.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||||||+|.++..++    .+|+|+|+|+                .++.+..+|+.++   +++||+|++..++
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~  147 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAF  147 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCG
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchH
Confidence            367899999999999988886    5799999996                2577889999776   6899999999999


Q ss_pred             cCC-CH---------HHHHHHHHHccCCCCEEEc
Q 027441          200 MGI-NF---------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~-d~---------~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+ ++         ..++.++.++|+|||.|+|
T Consensus       148 ~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i  181 (302)
T 3hem_A          148 EHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL  181 (302)
T ss_dssp             GGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEE
T ss_pred             HhcCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence            999 54         6999999999999999985

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.58  E-value=7.3e-15  Score=115.73  Aligned_cols=83  Identities=22%  Similarity=0.303  Sum_probs=73.7

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEc-ccccCCC---
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC-LSLMGIN---  203 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~-~~l~~~d---  203 (223)
                      ++.+|||||||+|.++..++   .+|+|+|+++          .++.++.+|+..+++++++||+|++. .+++|++   
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~  125 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDG  125 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHH
Confidence            67899999999999998887   5799999997          46889999999988888999999998 6888873   


Q ss_pred             HHHHHHHHHHccCCCCEEEc
Q 027441          204 FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...++.++.++|+|||.+++
T Consensus       126 ~~~~l~~~~~~l~~~G~l~~  145 (195)
T 3cgg_A          126 REPALANIHRALGADGRAVI  145 (195)
T ss_dssp             HHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCEEEE
Confidence            46999999999999999985

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.58  E-value=3e-15  Score=126.13  Aligned_cols=81  Identities=19%  Similarity=0.289  Sum_probs=71.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||||||+|.++..++    .+|+|+|+|+                .++.+..+|+..+|   ++||+|++..++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l  139 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAF  139 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCG
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCch
Confidence            367899999999999888776    4899999996                25778889997776   789999999999


Q ss_pred             cCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+   ++..+|.++.++|+|||.|+|
T Consensus       140 ~~~~~~~~~~~l~~~~~~LkpgG~l~~  166 (287)
T 1kpg_A          140 EHFGHERYDAFFSLAHRLLPADGVMLL  166 (287)
T ss_dssp             GGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             hhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence            998   678999999999999999985

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.58  E-value=4.5e-16  Score=130.32  Aligned_cols=83  Identities=19%  Similarity=0.274  Sum_probs=66.7

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCCCC--------------------------------------------
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSND--------------------------------------------  172 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~--------------------------------------------  172 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+|+..                                            
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            56899999999998776654    369999999610                                            


Q ss_pred             C-cEEEccCCC-CCC---CCCceeEEEEcccccCC-----CHHHHHHHHHHccCCCCEEEc
Q 027441          173 P-SVIACDMSN-TPL---NSSSVDVAVFCLSLMGI-----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       173 ~-~~~~~d~~~-lp~---~~~sfD~Vi~~~~l~~~-----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      + .++.+|+.. .|+   ...+||+|++++++||+     ++..++.+++|+|||||.|+|
T Consensus       135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~  195 (263)
T 2a14_A          135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT  195 (263)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            1 177889877 344   35799999999999985     345899999999999999986

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.58  E-value=2.9e-15  Score=126.26  Aligned_cols=84  Identities=17%  Similarity=0.161  Sum_probs=73.0

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCC-CCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPL-NSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~  198 (223)
                      .++.+|||||||+|.++..++    .+|+|+|+++                .++.++.+|+..+|+ .+++||+|++..+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            367899999999999888776    3899999996                136888999999888 6889999999999


Q ss_pred             ccC--C---CHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMG--I---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~--~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||  .   ++..+|.++.++|+|||.|+|
T Consensus       143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  172 (298)
T 1ri5_A          143 FHYAFSTSESLDIAQRNIARHLRPGGYFIM  172 (298)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            988  2   567999999999999999985

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.58  E-value=1.9e-15  Score=120.83  Aligned_cols=90  Identities=14%  Similarity=0.119  Sum_probs=73.6

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVA  193 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~V  193 (223)
                      .+...+....++ +|||||||+|.++..++   .+|+|+|+++              .++.+..+|+..+++++++||+|
T Consensus        20 ~l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v   98 (202)
T 2kw5_A           20 FLVSVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGI   98 (202)
T ss_dssp             SHHHHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEE
T ss_pred             HHHHHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEE
Confidence            344444444456 99999999999998887   4799999996              26788899999999888999999


Q ss_pred             EEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..  .|.   ++..++.++.++|+|||.|++
T Consensus        99 ~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~  129 (202)
T 2kw5_A           99 VSIF--CHLPSSLRQQLYPKVYQGLKPGGVFIL  129 (202)
T ss_dssp             EEEC--CCCCHHHHHHHHHHHHTTCCSSEEEEE
T ss_pred             EEEh--hcCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            9964  344   567999999999999999985

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.57  E-value=4.4e-15  Score=125.17  Aligned_cols=92  Identities=21%  Similarity=0.261  Sum_probs=78.7

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      ..+++.+... ++.+|||||||+|.++..++   .+|+|+|+++              .++.++.+|+..+++ +++||+
T Consensus       110 ~~~~~~~~~~-~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~  187 (286)
T 3m70_A          110 GDVVDAAKII-SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDF  187 (286)
T ss_dssp             HHHHHHHHHS-CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEE
T ss_pred             HHHHHHhhcc-CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccE
Confidence            3455666555 78999999999999999887   5899999997              267889999998887 789999


Q ss_pred             EEEcccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..+++|++   ...++.++.++|+|||.|+|
T Consensus       188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (286)
T 3m70_A          188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI  221 (286)
T ss_dssp             EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            99999999993   45999999999999999764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.57  E-value=9.4e-16  Score=129.66  Aligned_cols=94  Identities=17%  Similarity=0.293  Sum_probs=71.1

Q ss_pred             HHHHHHHhcc-CCCCeEEEECCcchHHHHHhc----CceEEEecCCCCC-------------------------------
Q 027441          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDP-------------------------------  173 (223)
Q Consensus       130 ~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~~-------------------------------  173 (223)
                      ..+.+.+... .++.+|||||||+|.++..++    .+|+|+|+|+..+                               
T Consensus        59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~  138 (289)
T 2g72_A           59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGE  138 (289)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCC
T ss_pred             HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCccc
Confidence            3455555432 256899999999999654443    4799999997211                               


Q ss_pred             --------------cEEEccCCC-CCC-----CCCceeEEEEcccccC----C-CHHHHHHHHHHccCCCCEEEc
Q 027441          174 --------------SVIACDMSN-TPL-----NSSSVDVAVFCLSLMG----I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       174 --------------~~~~~d~~~-lp~-----~~~sfD~Vi~~~~l~~----~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                                    .++.+|+.. +|+     ++++||+|++.++++|    + ++..+|.++.|+|||||.|+|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~  213 (289)
T 2g72_A          139 CWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL  213 (289)
T ss_dssp             CHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             chhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence                          234458877 664     3467999999999999    5 678999999999999999985

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.57  E-value=1e-15  Score=129.87  Aligned_cols=83  Identities=13%  Similarity=0.083  Sum_probs=63.4

Q ss_pred             CCCeEEEECCcchHHHHH----hc-----Cc--eEEEecCCC----------------CCcE--EEccCCCCC------C
Q 027441          141 PSLVIADFGCGDARLAKS----VK-----NK--VFSFDLVSN----------------DPSV--IACDMSNTP------L  185 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~----la-----~~--v~gvDis~~----------------~~~~--~~~d~~~lp------~  185 (223)
                      ++.+|||||||+|.++..    ++     ..  ++|+|+|+.                ++.+  ..+++..++      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            567999999999976542    22     22  399999961                2223  233443333      5


Q ss_pred             CCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          186 NSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 ~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++++||+|++..++||+ |+..+|.+++|+|||||.|+|
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i  170 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLI  170 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEE
Confidence            68899999999999999 899999999999999999985

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.57  E-value=5.5e-15  Score=118.48  Aligned_cols=93  Identities=26%  Similarity=0.271  Sum_probs=77.2

Q ss_pred             HHHHHHhcc-CCCCeEEEECCcchHHHHHhc----CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeE
Q 027441          131 IIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      .+...+... .++.+|||||||+|.++..++    .+|+|+|+++             .++.+..+|+..+++++++||+
T Consensus        31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  110 (215)
T 2pxx_A           31 SFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDV  110 (215)
T ss_dssp             HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEE
T ss_pred             HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccE
Confidence            345555432 467899999999999988886    3799999996             3678899999999998899999


Q ss_pred             EEEcccccCC----------------CHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI----------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~----------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..+++|+                +...++.++.++|+|||.|++
T Consensus       111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  157 (215)
T 2pxx_A          111 VLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFIS  157 (215)
T ss_dssp             EEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEE
Confidence            9998888654                346999999999999999985

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.56  E-value=1e-15  Score=126.40  Aligned_cols=83  Identities=17%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCC--CCCCCCceeEEEE-----
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSN--TPLNSSSVDVAVF-----  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~--lp~~~~sfD~Vi~-----  195 (223)
                      ++.+|||||||+|..+..++    .+|+++|+++              .++.++.+|+..  .++++++||.|++     
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~  139 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeec
Confidence            67899999999999999887    4789999997              244566777654  3577899999975     


Q ss_pred             cccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+++|+ ++..++.++.|+|||||+|++
T Consensus       140 ~~~~~~~~~~~~~~~e~~rvLkPGG~l~f  168 (236)
T 3orh_A          140 SEETWHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence            4455566 888999999999999999874

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.55  E-value=7e-15  Score=122.47  Aligned_cols=83  Identities=18%  Similarity=0.242  Sum_probs=72.3

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCCC---------CCcEEEccCCCCCCCCCceeEEEEcccccCC--CHHH
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI--NFPN  206 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~---------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~--d~~~  206 (223)
                      ++.+|||||||+|.++..++   .+|+|+|+|+.         ...++.+|+..+|+++++||+|++..+++|+  ++..
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~  133 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK  133 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccccHHH
Confidence            67899999999999999887   47999999971         1238899999999989999999998876654  7889


Q ss_pred             HHHHHHHccCCCCEEEc
Q 027441          207 YLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       207 ~l~e~~rvLkpgG~lvi  223 (223)
                      +|.++.++|+|||.|+|
T Consensus       134 ~l~~~~~~LkpgG~l~~  150 (260)
T 2avn_A          134 AFSEIRRVLVPDGLLIA  150 (260)
T ss_dssp             HHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHcCCCeEEEE
Confidence            99999999999999985

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.55  E-value=4e-16  Score=138.54  Aligned_cols=92  Identities=16%  Similarity=0.245  Sum_probs=72.8

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC--------CCcE-----EEccCCCCCCCCCceeEEE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------DPSV-----IACDMSNTPLNSSSVDVAV  194 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~--------~~~~-----~~~d~~~lp~~~~sfD~Vi  194 (223)
                      .+++.+.. .++.+|||||||+|.++..++   .+|+|+|+|+.        .+..     ...+...+|+++++||+|+
T Consensus        98 ~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~  176 (416)
T 4e2x_A           98 DFLATELT-GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIY  176 (416)
T ss_dssp             HHHHTTTC-SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEE
T ss_pred             HHHHHhCC-CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEE
Confidence            34444332 367899999999999999887   47999999962        1222     2234445667789999999


Q ss_pred             EcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +..+++|+ ++..+|.++.++|+|||+|+|
T Consensus       177 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i  206 (416)
T 4e2x_A          177 AANTLCHIPYVQSVLEGVDALLAPDGVFVF  206 (416)
T ss_dssp             EESCGGGCTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             ECChHHhcCCHHHHHHHHHHHcCCCeEEEE
Confidence            99999999 999999999999999999985

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.54  E-value=4.3e-15  Score=126.29  Aligned_cols=83  Identities=17%  Similarity=0.266  Sum_probs=71.4

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------------------------------------
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------------------------------------  170 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------------------------------------  170 (223)
                      ++.+|||||||+|.++..++     .+|+|+|+++                                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            57899999999999988876     4799999986                                             


Q ss_pred             ----------------------------CCCcEEEccCCCCC-----CCCCceeEEEEcccccCC-------CHHHHHHH
Q 027441          171 ----------------------------NDPSVIACDMSNTP-----LNSSSVDVAVFCLSLMGI-------NFPNYLQE  210 (223)
Q Consensus       171 ----------------------------~~~~~~~~d~~~lp-----~~~~sfD~Vi~~~~l~~~-------d~~~~l~e  210 (223)
                                                  .++.|..+|+...+     +.+++||+|+|..+++|+       ++..+|.+
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                        15778888887644     578899999999999876       56699999


Q ss_pred             HHHccCCCCEEEc
Q 027441          211 AQRVLKPRGEEQI  223 (223)
Q Consensus       211 ~~rvLkpgG~lvi  223 (223)
                      ++++|+|||+|+|
T Consensus       206 ~~~~LkpGG~lil  218 (292)
T 3g07_A          206 IYRHLRPGGILVL  218 (292)
T ss_dssp             HHHHEEEEEEEEE
T ss_pred             HHHHhCCCcEEEE
Confidence            9999999999986

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.54  E-value=2e-15  Score=126.02  Aligned_cols=88  Identities=20%  Similarity=0.361  Sum_probs=71.9

Q ss_pred             HHHHHHHhcc--CCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeE
Q 027441          130 NIIVKWLKDH--SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       130 ~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      ..+.+.+...  .++.+|||||||+|.++..++     .+|+|+|+++          .++.+..+|+..+|+++++||+
T Consensus        72 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~  151 (269)
T 1p91_A           72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDA  151 (269)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEE
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeE
Confidence            3444444432  367899999999999888776     3799999997          4678999999999999999999


Q ss_pred             EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..+.      .++.++.++|+|||.|++
T Consensus       152 v~~~~~~------~~l~~~~~~L~pgG~l~~  176 (269)
T 1p91_A          152 IIRIYAP------CKAEELARVVKPGGWVIT  176 (269)
T ss_dssp             EEEESCC------CCHHHHHHHEEEEEEEEE
T ss_pred             EEEeCCh------hhHHHHHHhcCCCcEEEE
Confidence            9987763      468999999999999975

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.54  E-value=2.2e-14  Score=119.84  Aligned_cols=92  Identities=17%  Similarity=0.190  Sum_probs=74.3

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCCC----------------------CCcEEEcc---
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVSN----------------------DPSVIACD---  179 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~----------------------~~~~~~~d---  179 (223)
                      .+++.+... ++.+|||||||+|.++..++      .+|+|+|+|+.                      ++.+..+|   
T Consensus        34 ~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  112 (275)
T 3bkx_A           34 AIAEAWQVK-PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS  112 (275)
T ss_dssp             HHHHHHTCC-TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred             HHHHHcCCC-CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence            455555433 77899999999999888775      47999999873                      46778887   


Q ss_pred             CCCCCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          180 MSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       180 ~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...+|+++++||+|++..+++|+ ++..++..+.++++|||.|++
T Consensus       113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~  157 (275)
T 3bkx_A          113 DDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDV  157 (275)
T ss_dssp             TCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEE
T ss_pred             hccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEE
Confidence            45677788999999999999999 777777777777777999975

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.54  E-value=1.8e-14  Score=117.86  Aligned_cols=82  Identities=26%  Similarity=0.332  Sum_probs=71.8

Q ss_pred             CCCeEEEECCcchHHHHHhc--CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcc-cccCC-
Q 027441          141 PSLVIADFGCGDARLAKSVK--NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCL-SLMGI-  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la--~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~-~l~~~-  202 (223)
                      ++.+|||||||+|.++..++  .+|+|+|+++              .++.++.+|+..++++ ++||+|++.. +++|+ 
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~  111 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQ  111 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCC
T ss_pred             CCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcC
Confidence            56899999999999999888  4799999996              3578899999888876 8899999987 99988 


Q ss_pred             ---CHHHHHHHHHHccCCCCEEEc
Q 027441          203 ---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 ---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         ++..++.++.++|+|||.|++
T Consensus       112 ~~~~~~~~l~~~~~~L~pgG~l~~  135 (243)
T 3d2l_A          112 TEADVKQTFDSAARLLTDGGKLLF  135 (243)
T ss_dssp             SHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEE
Confidence               345899999999999999985

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.54  E-value=2.4e-15  Score=123.55  Aligned_cols=83  Identities=18%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCC--CCCCCceeEEEE-cccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNT--PLNSSSVDVAVF-CLSL  199 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~l--p~~~~sfD~Vi~-~~~l  199 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+|+              .++.++.+|+.++  |+++++||+|++ .+++
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~  139 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence            67899999999999999887    3799999997              3467888999887  899999999999 5554


Q ss_pred             c--C--C-CHHHHHHHHHHccCCCCEEEc
Q 027441          200 M--G--I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~--~--~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +  .  . ++..++.++.|+|||||+|++
T Consensus       140 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~  168 (236)
T 1zx0_A          140 SEETWHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             chhhhhhhhHHHHHHHHHHhcCCCeEEEE
Confidence            2  1  2 345789999999999999974

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.53  E-value=1.5e-14  Score=115.44  Aligned_cols=84  Identities=14%  Similarity=0.221  Sum_probs=70.0

Q ss_pred             CCCCeEEEECCcchHHHHHhc-------CceEEEecCCC----CCcEEEccCCCCC------------------------
Q 027441          140 SPSLVIADFGCGDARLAKSVK-------NKVFSFDLVSN----DPSVIACDMSNTP------------------------  184 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~~----~~~~~~~d~~~lp------------------------  184 (223)
                      .++.+|||||||+|.++..++       .+|+|+|+++.    ++.++.+|+...+                        
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  100 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKE  100 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHHHh
Confidence            467899999999999988775       36999999983    6788999998876                        


Q ss_pred             -CCCCceeEEEEcccccCC-----CHH-------HHHHHHHHccCCCCEEEc
Q 027441          185 -LNSSSVDVAVFCLSLMGI-----NFP-------NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 -~~~~sfD~Vi~~~~l~~~-----d~~-------~~l~e~~rvLkpgG~lvi  223 (223)
                       +++.+||+|++..++++.     +..       .++.++.++|+|||.|++
T Consensus       101 ~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~  152 (201)
T 2plw_A          101 ILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV  152 (201)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence             567899999999888874     222       378999999999999975

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=6.5e-15  Score=121.18  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             cCCCCeEEEECCcchHHHHHhc---CceEEEecCC------------CCCcEEEccCCCCCCCC-----CceeEEEEccc
Q 027441          139 HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------NDPSVIACDMSNTPLNS-----SSVDVAVFCLS  198 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------~~~~~~~~d~~~lp~~~-----~sfD~Vi~~~~  198 (223)
                      ..++.+|||||||+|.++..++   .+|+|+|+++            .++.++++|+.++++..     ..||+|++..+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~  133 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG  133 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence            3467899999999999999887   5899999997            36789999998866432     24999999999


Q ss_pred             ccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||++   +..++.++.++|+|||.|+|
T Consensus       134 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i  161 (245)
T 3ggd_A          134 FHHIPVEKRELLGQSLRILLGKQGAMYL  161 (245)
T ss_dssp             STTSCGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred             hhcCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            99994   56999999999999998764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.53  E-value=1.2e-14  Score=124.43  Aligned_cols=81  Identities=16%  Similarity=0.339  Sum_probs=71.0

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||||||+|.++..++    .+|+|+|+|+                .++.+..+|+..+|   ++||+|++..++
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l  165 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAF  165 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCG
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChH
Confidence            367899999999999888776    4799999996                24778889988775   789999999999


Q ss_pred             cCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+   ++..++.++.++|+|||.|+|
T Consensus       166 ~~~~~~~~~~~l~~~~~~LkpgG~l~~  192 (318)
T 2fk8_A          166 EHFGHENYDDFFKRCFNIMPADGRMTV  192 (318)
T ss_dssp             GGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             HhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            999   678999999999999999985

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.53  E-value=1e-14  Score=123.87  Aligned_cols=91  Identities=16%  Similarity=0.187  Sum_probs=74.6

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC------------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..++..+..  +..+|||||||+|.++..++   .+|+|+|+++                  .++.++++|+..+|+ ++
T Consensus        73 ~~~~~~~~~--~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~  149 (299)
T 3g2m_A           73 REFATRTGP--VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DK  149 (299)
T ss_dssp             HHHHHHHCC--CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SC
T ss_pred             HHHHHhhCC--CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CC
Confidence            445555543  34599999999999999887   4799999996                  247799999999988 78


Q ss_pred             ceeEEEEc-ccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFC-LSLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~-~~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++. .+++|++   ...+|.++.++|+|||.|+|
T Consensus       150 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  188 (299)
T 3g2m_A          150 RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL  188 (299)
T ss_dssp             CEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            99999865 5677775   47999999999999999986

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.53  E-value=2.6e-14  Score=110.48  Aligned_cols=92  Identities=18%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----CCCcEEEccCCCCC--------CCCCceeEE
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVA  193 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----~~~~~~~~d~~~lp--------~~~~sfD~V  193 (223)
                      ++..+....++.+|||+|||+|.++..++      .+|+|+|+++    .++.+..+|+...+        +++++||+|
T Consensus        13 ~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i   92 (180)
T 1ej0_A           13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVV   92 (180)
T ss_dssp             HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEE
Confidence            34444333467899999999999887765      4799999998    45678889998877        778899999


Q ss_pred             EEcccccCC-CH-----------HHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGI-NF-----------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~-d~-----------~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..+++++ +.           ..++.++.++|+|||.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  134 (180)
T 1ej0_A           93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV  134 (180)
T ss_dssp             EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence            999998877 44           6899999999999999975

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.53  E-value=6.1e-15  Score=125.75  Aligned_cols=83  Identities=14%  Similarity=0.092  Sum_probs=73.4

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      .++.+|||||||+|.++..++      .+|+|+|+++                .++.++.+|+..+|++ ++||+|++..
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~  195 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG  195 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence            467899999999999999884      3799999996                1278899999999987 9999999999


Q ss_pred             cccCC-CHHH---HHHHHHHccCCCCEEEc
Q 027441          198 SLMGI-NFPN---YLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~~~---~l~e~~rvLkpgG~lvi  223 (223)
                      +++|+ ++..   ++.++.++|+|||.|+|
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i  225 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVT  225 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            99999 6664   79999999999999985

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.53  E-value=3.2e-14  Score=117.40  Aligned_cols=82  Identities=16%  Similarity=0.278  Sum_probs=69.2

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcc-cccCC
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCL-SLMGI  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~-~l~~~  202 (223)
                      ++.+|||||||+|.++..++   .+|+|+|+|+              .++.++.+|+..++++ ++||+|++.. +++|+
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~  119 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF  119 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcC
Confidence            56899999999999998887   4799999996              2578899999888875 6899999875 44555


Q ss_pred             ---CHHHHHHHHHHccCCCCEEEc
Q 027441          203 ---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 ---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         +...++.++.++|+|||.|++
T Consensus       120 ~~~~~~~~l~~~~~~L~pgG~li~  143 (252)
T 1wzn_A          120 DEEDLRKLFSKVAEALKPGGVFIT  143 (252)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEE
Confidence               456999999999999999975

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.52  E-value=1.9e-14  Score=113.52  Aligned_cols=84  Identities=18%  Similarity=0.241  Sum_probs=65.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCC-CCCCceeEEEEcc-cc
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAVFCL-SL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~-~l  199 (223)
                      .++.+|||+|||+|.++..++   .+|+|+|+++               .++.++..++..++ +.+++||+|++.. .+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~  100 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL  100 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence            367899999999999999987   5899999997               35677787776643 4578899999874 33


Q ss_pred             cC-------C--CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MG-------I--NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~-------~--d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++       .  +...++.++.++|+|||.|++
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i  133 (185)
T 3mti_A          101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAI  133 (185)
T ss_dssp             ---------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcchhcccChhhHHHHHHHHHHhcCCCcEEEE
Confidence            32       1  334889999999999999975

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.52  E-value=5.9e-15  Score=126.40  Aligned_cols=83  Identities=7%  Similarity=0.078  Sum_probs=65.2

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCCC------------C---------CcEEEccC------CCC--CCCC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN------------D---------PSVIACDM------SNT--PLNS  187 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~------------~---------~~~~~~d~------~~l--p~~~  187 (223)
                      ++.+|||||||+|..+..++    .+|+|+|+|+.            .         +.+.+.|+      .++  ++++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            56899999999997554333    47999999971            1         34667776      222  3567


Q ss_pred             CceeEEEEcccccCC----CHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++||+|+|.+++||+    +...+|.++.++|+|||+|++
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~  167 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLI  167 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            899999999999975    557999999999999999985

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.52  E-value=1.3e-14  Score=115.15  Aligned_cols=94  Identities=10%  Similarity=0.045  Sum_probs=75.9

Q ss_pred             HHHHHHHhcc--CCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCC--CC
Q 027441          130 NIIVKWLKDH--SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTP--LN  186 (223)
Q Consensus       130 ~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp--~~  186 (223)
                      +.+++.+...  .++.+|||+|||+|.++..++    .+|+|+|+++               .++.++.+|+..++  ++
T Consensus        31 ~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  110 (189)
T 3p9n_A           31 ESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT  110 (189)
T ss_dssp             HHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC
T ss_pred             HHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc
Confidence            3445555432  367899999999999988665    4799999997               36788999987754  45


Q ss_pred             CCceeEEEEcccccCC--CHHHHHHHHHH--ccCCCCEEEc
Q 027441          187 SSSVDVAVFCLSLMGI--NFPNYLQEAQR--VLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~--d~~~~l~e~~r--vLkpgG~lvi  223 (223)
                      +++||+|++...+++.  +...++.++.+  +|+|||+|+|
T Consensus       111 ~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~  151 (189)
T 3p9n_A          111 TSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVV  151 (189)
T ss_dssp             SSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEE
T ss_pred             CCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEE
Confidence            7899999999998875  67899999999  9999999985

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.50  E-value=1.2e-14  Score=118.71  Aligned_cols=78  Identities=13%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC----------CCCcEEEccC-CCCCCC-CCceeEEEEcccccCCCH
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDM-SNTPLN-SSSVDVAVFCLSLMGINF  204 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~~~~~~~~d~-~~lp~~-~~sfD~Vi~~~~l~~~d~  204 (223)
                      .++.+|||||||+|.++..++   .+|+|+|+++          .++.++.+|+ ..+|++ +++||+|++.     .++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-----~~~  121 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-----RGP  121 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----SCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----CCH
Confidence            367899999999999999988   4799999997          4789999999 678888 8999999987     356


Q ss_pred             HHHHHHHHHccCCCCEEE
Q 027441          205 PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       205 ~~~l~e~~rvLkpgG~lv  222 (223)
                      ..++.++.++|+|||.|+
T Consensus       122 ~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          122 TSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             SGGGGGHHHHEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEE
Confidence            789999999999999986

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.50  E-value=7.7e-14  Score=109.35  Aligned_cols=95  Identities=17%  Similarity=0.219  Sum_probs=76.8

Q ss_pred             chHHHHHHHHhcc-CCCCeEEEECCcchHHHHHhcC--ceEEEecCC------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          127 LPVNIIVKWLKDH-SPSLVIADFGCGDARLAKSVKN--KVFSFDLVS------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       127 ~~~~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la~--~v~gvDis~------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      .....+++.+... .++.+|||+|||+|.++..++.  +|+|+|+++      .++.++.+|+.. ++++++||+|++..
T Consensus         8 ~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~~~~~~~~~~d~~~-~~~~~~fD~i~~n~   86 (170)
T 3q87_B            8 EDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALESHRGGNLVRADLLC-SINQESVDVVVFNP   86 (170)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHTCSSSCEEECSTTT-TBCGGGCSEEEECC
T ss_pred             ccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhcccCCeEEECChhh-hcccCCCCEEEECC
Confidence            3345566666541 2677999999999999999884  699999997      578899999987 66678999999999


Q ss_pred             cccCC-CH---------HHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI-NF---------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~---------~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+++. +.         ..++.++.+.| |||.|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~  121 (170)
T 3q87_B           87 PYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYL  121 (170)
T ss_dssp             CCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEE
T ss_pred             CCccCCccccccCCcchHHHHHHHHhhC-CCCEEEE
Confidence            98875 32         58889999999 9999975

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.50  E-value=5.6e-14  Score=122.51  Aligned_cols=83  Identities=19%  Similarity=0.208  Sum_probs=72.1

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+|+               .++.++.+|+..+++++++||+|++..+.++
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~  145 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  145 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence            67899999999999998887    3899999996               2378999999999999999999999776443


Q ss_pred             C----CHHHHHHHHHHccCCCCEEEc
Q 027441          202 I----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +    +...++.++.|+|+|||+|++
T Consensus       146 l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          146 LFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            3    778999999999999999873

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.50  E-value=9.2e-14  Score=111.40  Aligned_cols=91  Identities=15%  Similarity=0.201  Sum_probs=74.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      ..++..+... ++.+|||||||+|.++..++     .+|+|+|+++               .++.++.+|+.........
T Consensus        30 ~~~l~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  108 (204)
T 3e05_A           30 AVTLSKLRLQ-DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD  108 (204)
T ss_dssp             HHHHHHTTCC-TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred             HHHHHHcCCC-CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence            3445555443 67899999999999988886     4799999997               3577888998665444478


Q ss_pred             eeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++..+++  ++..++.++.++|+|||.|++
T Consensus       109 ~D~i~~~~~~~--~~~~~l~~~~~~LkpgG~l~~  140 (204)
T 3e05_A          109 PDRVFIGGSGG--MLEEIIDAVDRRLKSEGVIVL  140 (204)
T ss_dssp             CSEEEESCCTT--CHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCEEEECCCCc--CHHHHHHHHHHhcCCCeEEEE
Confidence            99999998876  888999999999999999985

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.49  E-value=2.9e-14  Score=121.91  Aligned_cols=83  Identities=20%  Similarity=0.220  Sum_probs=70.3

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCCC----------------------CCcEEEccCCCCC----CC--CC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN----------------------DPSVIACDMSNTP----LN--SS  188 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~----------------------~~~~~~~d~~~lp----~~--~~  188 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+++.                      ++.++++|+..++    ++  ++
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            56899999999999888776    47999999961                      4678999998876    54  45


Q ss_pred             ceeEEEEcccccCC--C---HHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI--N---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~--d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++..++||+  +   +..+|.++.++|+|||.|++
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~  153 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIG  153 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            99999999999987  4   35999999999999999985

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.49  E-value=8.2e-14  Score=109.56  Aligned_cols=93  Identities=16%  Similarity=0.242  Sum_probs=76.6

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CC--CcEEEccCCCCCCCCC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------ND--PSVIACDMSNTPLNSS  188 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~--~~~~~~d~~~lp~~~~  188 (223)
                      ...+++.+... ++.+|||+|||+|.++..++   .+|+|+|+++               .+  +.++.+|+.. +++++
T Consensus        41 ~~~l~~~~~~~-~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~  118 (194)
T 1dus_A           41 TKILVENVVVD-KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDR  118 (194)
T ss_dssp             HHHHHHHCCCC-TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTS
T ss_pred             HHHHHHHcccC-CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccC
Confidence            34566666544 67899999999999998887   5799999996               23  7888899877 44577


Q ss_pred             ceeEEEEcccccCC--CHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI--NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~--d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++...++|.  +...++.++.++|+|||.|++
T Consensus       119 ~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  155 (194)
T 1dus_A          119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEE
Confidence            89999999998874  677999999999999999985

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.49  E-value=4e-14  Score=114.97  Aligned_cols=82  Identities=15%  Similarity=0.157  Sum_probs=64.6

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCC----CCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNT----PLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~l----p~~~~sfD~Vi~~~  197 (223)
                      .++.+|||||||+|.++..++     .+|+|+|+|+             .++.++.+|+...    ++. ++||+|++..
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~  134 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQDI  134 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence            367899999999999888765     4799999996             3566778888763    554 7899999873


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       .++.+...++.++.|+|||||.|+|
T Consensus       135 -~~~~~~~~~l~~~~r~LkpgG~l~i  159 (210)
T 1nt2_A          135 -AQKNQIEILKANAEFFLKEKGEVVI  159 (210)
T ss_dssp             -CSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -cChhHHHHHHHHHHHHhCCCCEEEE
Confidence             2332344669999999999999985

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.49  E-value=8.2e-14  Score=111.55  Aligned_cols=92  Identities=16%  Similarity=0.193  Sum_probs=71.1

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----CCCcEEEccCCCCCCC-----------CCceeEE
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----NDPSVIACDMSNTPLN-----------SSSVDVA  193 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----~~~~~~~~d~~~lp~~-----------~~sfD~V  193 (223)
                      |.+.+....++.+|||||||+|.++..++   .+|+|+|+++    .++.++.+|+.+.+..           .++||+|
T Consensus        16 i~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~V   95 (191)
T 3dou_A           16 LLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDV   95 (191)
T ss_dssp             HHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEE
T ss_pred             HHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEE
Confidence            33333333478999999999999999998   5799999998    4788999999886521           1489999


Q ss_pred             EEcccccCC-----C-------HHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGI-----N-------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~-----d-------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++.......     |       ...++..+.++|+|||.|++
T Consensus        96 lsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~  137 (191)
T 3dou_A           96 VSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLL  137 (191)
T ss_dssp             EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence            997654422     1       23788899999999999985

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.48  E-value=1.4e-14  Score=119.99  Aligned_cols=83  Identities=19%  Similarity=0.331  Sum_probs=70.2

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC------------CC--------------------------------
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS------------ND--------------------------------  172 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~------------~~--------------------------------  172 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+|+            ..                                
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            56799999999999988876    2799999996            11                                


Q ss_pred             C-cEEEccCCCCC-CCC---CceeEEEEccccc----CC-CHHHHHHHHHHccCCCCEEEc
Q 027441          173 P-SVIACDMSNTP-LNS---SSVDVAVFCLSLM----GI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       173 ~-~~~~~d~~~lp-~~~---~sfD~Vi~~~~l~----~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      + .+..+|+...+ +++   ++||+|++..+++    ++ ++..+|.++.++|+|||.|++
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~  196 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVM  196 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Confidence            5 78889998754 355   8999999999999    55 677999999999999999985

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.48  E-value=1.6e-13  Score=119.25  Aligned_cols=89  Identities=19%  Similarity=0.197  Sum_probs=71.0

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      .+++.+. ..+..+|||||||+|.++..++     .+++++|+++             .++.++.+|+. .+++  +||+
T Consensus       175 ~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~  250 (348)
T 3lst_A          175 ILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADV  250 (348)
T ss_dssp             HHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSE
T ss_pred             HHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcE
Confidence            4444443 2357899999999999998886     2678899753             35788899996 4444  8999


Q ss_pred             EEEcccccCC-CH--HHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-NF--PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-d~--~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..++||+ +.  ..+|.++.++|+|||.|+|
T Consensus       251 v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i  284 (348)
T 3lst_A          251 HVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLV  284 (348)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             EEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            9999999998 44  4999999999999999975

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.47  E-value=3.1e-14  Score=115.17  Aligned_cols=90  Identities=19%  Similarity=0.213  Sum_probs=71.1

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCCC-------------------CCcEEEccCCCCCCCC
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------------------DPSVIACDMSNTPLNS  187 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~-------------------~~~~~~~d~~~lp~~~  187 (223)
                      .+..+... ++.+|||||||+|.++..++     .+|+|+|+|+.                   ++.++++|+.++|+.+
T Consensus        19 ~~~~l~~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~   97 (218)
T 3mq2_A           19 EFEQLRSQ-YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS   97 (218)
T ss_dssp             HHHHHHTT-SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC
T ss_pred             HHHHhhcc-CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC
Confidence            34444443 67899999999999998887     47999999972                   5678899999999887


Q ss_pred             CceeEEEEcc---ccc--CC-CHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCL---SLM--GI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~---~l~--~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++ |.|+...   .++  |+ ++..++.++.++|+|||.|+|
T Consensus        98 ~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  138 (218)
T 3mq2_A           98 GV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLV  138 (218)
T ss_dssp             CE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred             CC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence            76 7776333   222  44 678999999999999999985

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.47  E-value=1.6e-13  Score=115.78  Aligned_cols=93  Identities=14%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             HHHHHHhccCCCCeEEEECCcc---hHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCCC-----
Q 027441          131 IIVKWLKDHSPSLVIADFGCGD---ARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTP-----  184 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~---G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~lp-----  184 (223)
                      .+..++.......+|||||||+   |.++..+.     .+|+++|+|+             .++.++.+|+.+.+     
T Consensus        67 ~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~  146 (274)
T 2qe6_A           67 RGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNH  146 (274)
T ss_dssp             HHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHS
T ss_pred             HHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhcc
Confidence            3444554222457999999999   98766553     5899999996             36788999997631     


Q ss_pred             ------CCCCceeEEEEcccccCC-C--HHHHHHHHHHccCCCCEEEc
Q 027441          185 ------LNSSSVDVAVFCLSLMGI-N--FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 ------~~~~sfD~Vi~~~~l~~~-d--~~~~l~e~~rvLkpgG~lvi  223 (223)
                            ++..+||+|++..++||+ +  +..+|.++.++|+|||+|+|
T Consensus       147 ~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i  194 (274)
T 2qe6_A          147 PDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFM  194 (274)
T ss_dssp             HHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             chhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEE
Confidence                  333589999999999999 4  78999999999999999985

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.47  E-value=2.9e-13  Score=114.38  Aligned_cols=83  Identities=14%  Similarity=0.147  Sum_probs=67.2

Q ss_pred             CCCeEEEECCcchH----HHHHhc---------CceEEEecCC--------C----------------------------
Q 027441          141 PSLVIADFGCGDAR----LAKSVK---------NKVFSFDLVS--------N----------------------------  171 (223)
Q Consensus       141 ~~~~ILDiGcG~G~----~a~~la---------~~v~gvDis~--------~----------------------------  171 (223)
                      +..+|||+|||||.    ++..|+         .+|+|+|+|+        .                            
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    444443         1699999996        0                            


Q ss_pred             ----------CCcEEEccCCCCCCC-CCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441          172 ----------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       172 ----------~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                                ++.|..+|+...|++ .+.||+|+|..+++|++.+   .++..++++|+|||+|++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                      255677888876665 5789999999999999654   999999999999999985

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.47  E-value=1.5e-13  Score=119.47  Aligned_cols=83  Identities=22%  Similarity=0.257  Sum_probs=71.6

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccc--
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS--  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~--  198 (223)
                      .++.+|||||||+|.++..++    .+|+|+|+++               .++.++.+|+..+++++++||+|++..+  
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~  142 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY  142 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchh
Confidence            367899999999999988886    3799999996               3578899999999998899999998773  


Q ss_pred             -ccCC-CHHHHHHHHHHccCCCCEEE
Q 027441          199 -LMGI-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       199 -l~~~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                       +.|. +...++.++.++|+|||.|+
T Consensus       143 ~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          143 FLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence             4455 56789999999999999987

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.46  E-value=1.2e-13  Score=116.34  Aligned_cols=81  Identities=12%  Similarity=0.167  Sum_probs=66.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc--CceEEEecCCC----------------CCcEE--EccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK--NKVFSFDLVSN----------------DPSVI--ACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la--~~v~gvDis~~----------------~~~~~--~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||||||+|.++..++  .+|+|+|+++.                ++.++  .+|+..+|  +.+||+|+|..+ 
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-  149 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG-  149 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-
Confidence            467899999999999999887  58999999973                35667  78888876  689999999887 


Q ss_pred             cCC-CH----H---HHHHHHHHccCCCC--EEEc
Q 027441          200 MGI-NF----P---NYLQEAQRVLKPRG--EEQI  223 (223)
Q Consensus       200 ~~~-d~----~---~~l~e~~rvLkpgG--~lvi  223 (223)
                      ++. ++    .   .+|.++.++|+|||  .|++
T Consensus       150 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~  183 (265)
T 2oxt_A          150 ESSPKWSVESERTIKILELLEKWKVKNPSADFVV  183 (265)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence            543 32    2   38899999999999  8875

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.46  E-value=8e-14  Score=108.69  Aligned_cols=88  Identities=16%  Similarity=0.174  Sum_probs=68.7

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------C-CCcEEEccCCC-CCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------N-DPSVIACDMSN-TPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~-~~~~~~~d~~~-lp~~~~  188 (223)
                      .++..+... ++.+|||||||+|.++..++     .+|+|+|+++               . ++ ++.+|+.. ++..++
T Consensus        16 ~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~   93 (178)
T 3hm2_A           16 LAISALAPK-PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD   93 (178)
T ss_dssp             HHHHHHCCC-TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred             HHHHHhccc-CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence            445555433 67899999999999998876     3699999997               1 45 67777643 343338


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++..+++|   ..++.++.++|+|||.|++
T Consensus        94 ~~D~i~~~~~~~~---~~~l~~~~~~L~~gG~l~~  125 (178)
T 3hm2_A           94 NPDVIFIGGGLTA---PGVFAAAWKRLPVGGRLVA  125 (178)
T ss_dssp             CCSEEEECC-TTC---TTHHHHHHHTCCTTCEEEE
T ss_pred             CCCEEEECCcccH---HHHHHHHHHhcCCCCEEEE
Confidence            8999999999988   8899999999999999985

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.46  E-value=9.3e-14  Score=111.64  Aligned_cols=89  Identities=15%  Similarity=0.107  Sum_probs=73.2

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCce
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      ...++..+... ++.+|||||||+|.++..++   .+|+++|+++               .++.+..+|+...+..+++|
T Consensus        66 ~~~~~~~l~~~-~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  144 (210)
T 3lbf_A           66 VARMTELLELT-PQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF  144 (210)
T ss_dssp             HHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHHhcCCC-CCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence            34455555443 77899999999999998887   6899999996               35788899998876667899


Q ss_pred             eEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++..+++|+..     ++.++|+|||+|++
T Consensus       145 D~i~~~~~~~~~~~-----~~~~~L~pgG~lv~  172 (210)
T 3lbf_A          145 DAIIVTAAPPEIPT-----ALMTQLDEGGILVL  172 (210)
T ss_dssp             EEEEESSBCSSCCT-----HHHHTEEEEEEEEE
T ss_pred             cEEEEccchhhhhH-----HHHHhcccCcEEEE
Confidence            99999999999843     58999999999985

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.46  E-value=1.4e-13  Score=120.55  Aligned_cols=90  Identities=18%  Similarity=0.244  Sum_probs=71.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      .++..+....+..+|||||||+|.++..++     ..++++|+..        .++.++.+|+.. +++.  ||+|++..
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~  275 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKA  275 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEES
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEec
Confidence            344443323356899999999999998887     3577889821        457888999977 6664  99999999


Q ss_pred             cccCC-CHH--HHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI-NFP--NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~~--~~l~e~~rvLkpgG~lvi  223 (223)
                      ++||+ +..  .+|.++.++|+|||.|+|
T Consensus       276 ~lh~~~d~~~~~~l~~~~~~L~pgG~l~i  304 (372)
T 1fp1_D          276 VCHNWSDEKCIEFLSNCHKALSPNGKVII  304 (372)
T ss_dssp             SGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            99998 555  999999999999999985

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.46  E-value=1.2e-13  Score=113.79  Aligned_cols=80  Identities=14%  Similarity=0.072  Sum_probs=68.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCC---CCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~---~~sfD~Vi~~~  197 (223)
                      ++.+|||||||+|.++..++     .+|+|+|+++               .++.++.+|+.++++.   +++||+|++..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            56899999999999888776     4799999997               3678899999887754   67999999876


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +   .++..++.++.++|+|||.|++
T Consensus       150 ~---~~~~~~l~~~~~~LkpgG~l~~  172 (240)
T 1xdz_A          150 V---ARLSVLSELCLPLVKKNGLFVA  172 (240)
T ss_dssp             C---SCHHHHHHHHGGGEEEEEEEEE
T ss_pred             c---CCHHHHHHHHHHhcCCCCEEEE
Confidence            3   3788999999999999999975

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.45  E-value=1.7e-13  Score=108.69  Aligned_cols=84  Identities=18%  Similarity=0.281  Sum_probs=66.6

Q ss_pred             CCCCeEEEECCcchHHHHHhc--------------CceEEEecCCC----CCcEE-EccCCCCC--------CCCCceeE
Q 027441          140 SPSLVIADFGCGDARLAKSVK--------------NKVFSFDLVSN----DPSVI-ACDMSNTP--------LNSSSVDV  192 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la--------------~~v~gvDis~~----~~~~~-~~d~~~lp--------~~~~sfD~  192 (223)
                      .++.+|||||||+|.++..++              .+|+|+|+++.    ++.++ .+|+...+        +++.+||+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~  100 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADV  100 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGCEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCCCcE
Confidence            467899999999999888775              35999999983    46777 88876643        34568999


Q ss_pred             EEEcccccCC-----CH-------HHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-----NF-------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-----d~-------~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..++++.     +.       ..++.++.++|+|||.|++
T Consensus       101 V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (196)
T 2nyu_A          101 ILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLC  143 (196)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            9997766543     33       4789999999999999985

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.45  E-value=3.2e-13  Score=116.69  Aligned_cols=82  Identities=17%  Similarity=0.195  Sum_probs=70.5

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+++               .++.++.+|+..+++++++||+|++..+.++
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~  117 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence            67899999999999988876    3799999995               2477899999999888889999999865443


Q ss_pred             ---C-CHHHHHHHHHHccCCCCEEE
Q 027441          202 ---I-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       202 ---~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                         . ++..++.++.++|+|||.|+
T Consensus       118 l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          118 LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccHHHHHHHHHHHHhhcCCCeEEE
Confidence               3 57799999999999999987

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.45  E-value=3.9e-14  Score=125.47  Aligned_cols=93  Identities=13%  Similarity=0.157  Sum_probs=74.8

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC------------------------CCCcEEEccC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------------------NDPSVIACDM  180 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------------------~~~~~~~~d~  180 (223)
                      ..+++.+.. .++.+|||||||+|.++..++     .+|+|+|+++                        .++.|+.+|+
T Consensus       163 ~~il~~l~l-~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~  241 (438)
T 3uwp_A          163 AQMIDEIKM-TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  241 (438)
T ss_dssp             HHHHHHHCC-CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred             HHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence            445555543 378999999999999988776     2599999995                        3578899999


Q ss_pred             CCCCCCC--CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          181 SNTPLNS--SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       181 ~~lp~~~--~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .++|+.+  ..||+|++...+++-+....|.++.|+|||||.|++
T Consensus       242 ~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVs  286 (438)
T 3uwp_A          242 LSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVS  286 (438)
T ss_dssp             TSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEE
T ss_pred             cCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEE
Confidence            9988754  479999988776444777999999999999999985

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.45  E-value=2.3e-13  Score=109.76  Aligned_cols=88  Identities=7%  Similarity=0.022  Sum_probs=70.6

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------C-CCcEEEccCCCCCCCCCcee
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------N-DPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~-~~~~~~~d~~~lp~~~~sfD  191 (223)
                      .++..+... ++.+|||||||+|.++..++   .+|+|+|+++               . ++.++.+|+.........||
T Consensus        46 ~~l~~l~~~-~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D  124 (204)
T 3njr_A           46 LTLAALAPR-RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPE  124 (204)
T ss_dssp             HHHHHHCCC-TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCS
T ss_pred             HHHHhcCCC-CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCC
Confidence            445555443 67899999999999988887   5899999997               2 67888999987433345799


Q ss_pred             EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++..++   +.. ++.++.++|+|||.|++
T Consensus       125 ~v~~~~~~---~~~-~l~~~~~~LkpgG~lv~  152 (204)
T 3njr_A          125 AVFIGGGG---SQA-LYDRLWEWLAPGTRIVA  152 (204)
T ss_dssp             EEEECSCC---CHH-HHHHHHHHSCTTCEEEE
T ss_pred             EEEECCcc---cHH-HHHHHHHhcCCCcEEEE
Confidence            99987744   667 99999999999999985

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.45  E-value=2e-13  Score=110.38  Aligned_cols=83  Identities=14%  Similarity=0.255  Sum_probs=70.5

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCC--CCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~  198 (223)
                      ++.+|||||||+|.++..++     .+|+|+|+++               .++.++.+|+..++  +++++||+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            56899999999999988876     4799999996               36789999998887  77889999999877


Q ss_pred             ccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..|.         ....++.++.++|+|||.|+|
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  154 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  154 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEE
Confidence            5443         236899999999999999975

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.45  E-value=2.8e-13  Score=128.27  Aligned_cols=93  Identities=14%  Similarity=0.310  Sum_probs=78.0

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------------CCCcEEEccCC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------------NDPSVIACDMS  181 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------------~~~~~~~~d~~  181 (223)
                      .+.+++.+... ++.+|||||||+|.++..|+      .+|+|+|+++                     .++.++++|+.
T Consensus       710 le~LLelL~~~-~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~  788 (950)
T 3htx_A          710 VEYALKHIRES-SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL  788 (950)
T ss_dssp             HHHHHHHHHHS-CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT
T ss_pred             HHHHHHHhccc-CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH
Confidence            34556666655 77899999999999999987      2699999996                     13678999999


Q ss_pred             CCCCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441          182 NTPLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       182 ~lp~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                      .+|+.+++||+|++..+++|++.+   .++.++.++|+|| .|+|
T Consensus       789 dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LII  832 (950)
T 3htx_A          789 EFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIV  832 (950)
T ss_dssp             SCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEE
T ss_pred             hCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEE
Confidence            999999999999999999999533   5899999999999 6553

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.44  E-value=2.1e-13  Score=120.08  Aligned_cols=83  Identities=23%  Similarity=0.233  Sum_probs=70.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      .++.+|||||||+|.++..++    .+|+|+|+++               ..+.++.+|+..++++ ++||+|++..+.+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGY  140 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBT
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhh
Confidence            367899999999999998887    3899999995               2378899999998877 8899999977555


Q ss_pred             CC----CHHHHHHHHHHccCCCCEEEc
Q 027441          201 GI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++    ++..++.++.++|+|||+|++
T Consensus       141 ~l~~e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          141 FLLRESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             TBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred             cccchHHHHHHHHHHHhhCCCCeEEEE
Confidence            54    477899999999999999975

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.44  E-value=8.2e-14  Score=123.00  Aligned_cols=82  Identities=12%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             CCCeEEEECCc------chHHHHHhc------CceEEEecCC------CCCcEEEccCCCCCCC------CCceeEEEEc
Q 027441          141 PSLVIADFGCG------DARLAKSVK------NKVFSFDLVS------NDPSVIACDMSNTPLN------SSSVDVAVFC  196 (223)
Q Consensus       141 ~~~~ILDiGcG------~G~~a~~la------~~v~gvDis~------~~~~~~~~d~~~lp~~------~~sfD~Vi~~  196 (223)
                      +..+|||||||      +|..+..++      .+|+|+|+++      .++.|+++|+.++|+.      +++||+|++.
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisd  295 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDD  295 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEEC
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEEC
Confidence            56899999999      655444443      4799999998      4788999999998887      7899999987


Q ss_pred             ccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+ |+. ++..+|.++.|+|||||+|+|
T Consensus       296 gs-H~~~d~~~aL~el~rvLKPGGvlVi  322 (419)
T 3sso_A          296 GS-HINAHVRTSFAALFPHVRPGGLYVI  322 (419)
T ss_dssp             SC-CCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             Cc-ccchhHHHHHHHHHHhcCCCeEEEE
Confidence            54 555 788999999999999999986

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.44  E-value=3.2e-13  Score=117.59  Aligned_cols=91  Identities=20%  Similarity=0.287  Sum_probs=75.2

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCcee
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      .+++.+... ++.+|||||||+|.++..++    .+|+|+|+++               .++.++.+|+..++++ ++||
T Consensus        41 ~i~~~l~~~-~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D  118 (348)
T 2y1w_A           41 AILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVD  118 (348)
T ss_dssp             HHHHTGGGT-TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEE
T ss_pred             HHHhccccC-CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-Ccee
Confidence            444544443 67899999999999998876    4899999996               3578899999988775 6799


Q ss_pred             EEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++..+++|+   +...++.++.++|+|||.|++
T Consensus       119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  153 (348)
T 2y1w_A          119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  153 (348)
T ss_dssp             EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence            99999888876   456888899999999999974

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.44  E-value=3.9e-13  Score=118.30  Aligned_cols=81  Identities=17%  Similarity=0.179  Sum_probs=68.0

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc-
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM-  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~-  200 (223)
                      ++.+|||||||+|.++..++    .+|+|+|.|+               ..+.++.++++.+.++ ..||+||+....+ 
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~  161 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG  161 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence            67899999999999988765    4799999986               4578899999998876 6799999854433 


Q ss_pred             --CC-CHHHHHHHHHHccCCCCEEE
Q 027441          201 --GI-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       201 --~~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                        +. ..+.++....|+|+|||.++
T Consensus       162 l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          162 LLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             BTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccchhhhHHHHHHhhCCCCceEC
Confidence              33 67799999999999999987

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.44  E-value=1.1e-13  Score=112.41  Aligned_cols=83  Identities=11%  Similarity=0.235  Sum_probs=69.2

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCC--CCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~  198 (223)
                      ++.+|||||||+|.++..++     ..|+|+|+++               .++.++.+|+..++  +++++||.|++.+.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            56899999999999998886     4799999996               36788999998876  77889999988765


Q ss_pred             ccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..|.         ..+.++.++.++|+|||.|+|
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~  151 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  151 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEE
Confidence            4433         136899999999999999975

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.44  E-value=1.4e-13  Score=116.41  Aligned_cols=81  Identities=12%  Similarity=0.112  Sum_probs=66.0

Q ss_pred             CCCCeEEEECCcchHHHHHhc--CceEEEecCCC----------------CCcEE--EccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK--NKVFSFDLVSN----------------DPSVI--ACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la--~~v~gvDis~~----------------~~~~~--~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||||||+|.++..++  .+|+|+|+++.                ++.++  .+|+..+|  +++||+|+|..+ 
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-  157 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG-  157 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC-
T ss_pred             CCCCEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC-
Confidence            367899999999999999887  57999999873                35677  78888776  689999999888 


Q ss_pred             cCC-CH----H---HHHHHHHHccCCCC--EEEc
Q 027441          200 MGI-NF----P---NYLQEAQRVLKPRG--EEQI  223 (223)
Q Consensus       200 ~~~-d~----~---~~l~e~~rvLkpgG--~lvi  223 (223)
                      ++. ++    .   .+|.++.++|+|||  .|++
T Consensus       158 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~  191 (276)
T 2wa2_A          158 ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV  191 (276)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred             cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence            543 32    2   47899999999999  8874

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.43  E-value=7.1e-13  Score=116.14  Aligned_cols=80  Identities=15%  Similarity=0.179  Sum_probs=68.8

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      +..+|||||||+|.++..++     .+++++|+ +                .++.+..+|+. .|++. .||+|++..++
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl  278 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVL  278 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCG
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhh
Confidence            56899999999999998886     37899998 5                35789999998 56655 89999999999


Q ss_pred             cCCCHH---HHHHHHHHccCCCCEEEc
Q 027441          200 MGINFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                      |+++.+   .+|.++.++|+|||.|+|
T Consensus       279 h~~~d~~~~~~L~~~~~~L~pgG~l~i  305 (369)
T 3gwz_A          279 HDWDDDDVVRILRRIATAMKPDSRLLV  305 (369)
T ss_dssp             GGSCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            999443   799999999999999986

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.43  E-value=6.6e-13  Score=116.27  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=72.2

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      .++..+....+..+|||||||+|.++..++     .+++++|+..        .++.++.+|+.. |++.+  |+|++..
T Consensus       191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~  267 (364)
T 3p9c_A          191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKW  267 (364)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEES
T ss_pred             HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehH
Confidence            344443323356899999999999998886     3689999842        468899999987 77755  9999999


Q ss_pred             cccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++|+++   ...+|.+++++|+|||.|+|
T Consensus       268 vlh~~~d~~~~~~L~~~~~~L~pgG~l~i  296 (364)
T 3p9c_A          268 ILHDWSDQHCATLLKNCYDALPAHGKVVL  296 (364)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HhccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            999883   34899999999999999975

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.43  E-value=4.5e-13  Score=117.48  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCCC---H
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN---F  204 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d---~  204 (223)
                      +..+|||||||+|.++..++     .+++++|+..        .++.++.+|+.. |++.+  |+|++..++||++   .
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~  279 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHC  279 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHH
Confidence            56899999999999998886     3689999832        468899999986 67654  9999999999883   3


Q ss_pred             HHHHHHHHHccCCCCEEEc
Q 027441          205 PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       205 ~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+|.+++++|+|||.|+|
T Consensus       280 ~~~l~~~~~~L~pgG~l~i  298 (368)
T 3reo_A          280 LKLLKNCYAALPDHGKVIV  298 (368)
T ss_dssp             HHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEE
Confidence            4889999999999999875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.43  E-value=1.8e-13  Score=116.61  Aligned_cols=82  Identities=12%  Similarity=0.065  Sum_probs=67.6

Q ss_pred             ccCCCCeEEEECCcchHHHHH-hc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          138 DHSPSLVIADFGCGDARLAKS-VK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       138 ~~~~~~~ILDiGcG~G~~a~~-la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      ...++.+|||||||+|.++.. ++    .+|+|+|+++               .++.++.+|+..+|  +++||+|++..
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a  196 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAA  196 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECT
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECC
Confidence            345789999999999876533 32    6899999997               46789999998876  78999999865


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .  .-+...++.++.|+|+|||.|++
T Consensus       197 ~--~~d~~~~l~el~r~LkPGG~Lvv  220 (298)
T 3fpf_A          197 L--AEPKRRVFRNIHRYVDTETRIIY  220 (298)
T ss_dssp             T--CSCHHHHHHHHHHHCCTTCEEEE
T ss_pred             C--ccCHHHHHHHHHHHcCCCcEEEE
Confidence            4  23888999999999999999985

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.43  E-value=2.6e-13  Score=119.80  Aligned_cols=83  Identities=14%  Similarity=0.180  Sum_probs=73.3

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcccccC--
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG--  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~--  201 (223)
                      ++.+|||+|||+|.++..++   .+|+++|+++              ..+.++.+|+...+.++++||+|++...+|+  
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~  312 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG  312 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence            56899999999999999887   5899999997              2578899999998877789999999999997  


Q ss_pred             ---C-CHHHHHHHHHHccCCCCEEEc
Q 027441          202 ---I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ---~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         . +...++.++.++|+|||.|+|
T Consensus       313 ~~~~~~~~~~l~~~~~~LkpGG~l~i  338 (381)
T 3dmg_A          313 AVILDVAQAFVNVAAARLRPGGVFFL  338 (381)
T ss_dssp             SSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccHHHHHHHHHHHHHhcCcCcEEEE
Confidence               2 566999999999999999986

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.43  E-value=8.8e-13  Score=113.54  Aligned_cols=78  Identities=17%  Similarity=0.260  Sum_probs=67.1

Q ss_pred             CeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      .+|||||||+|.++..++     .+++++|+ +                .++.++.+|+.. +++ ..||+|++..++||
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~  245 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD  245 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence            899999999999988886     36999999 6                247788999877 555 67999999999998


Q ss_pred             C-CHH--HHHHHHHHccCCCCEEEc
Q 027441          202 I-NFP--NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~-d~~--~~l~e~~rvLkpgG~lvi  223 (223)
                      + +..  .++.++.++|+|||.|+|
T Consensus       246 ~~~~~~~~~l~~~~~~L~pgG~l~i  270 (334)
T 2ip2_A          246 LDEAASLRLLGNCREAMAGDGRVVV  270 (334)
T ss_dssp             CCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            8 333  999999999999999885

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.43  E-value=2e-13  Score=116.16  Aligned_cols=91  Identities=11%  Similarity=0.154  Sum_probs=67.1

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCCCCCcE--------E---EccCCCCC---CCCCceeE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSV--------I---ACDMSNTP---LNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~~~~--------~---~~d~~~lp---~~~~sfD~  192 (223)
                      .+++.+....++.+|||||||||.++..++    .+|+|+|+++..+.+        .   ..++..++   ++..+||+
T Consensus        75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~  154 (291)
T 3hp7_A           75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSF  154 (291)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSE
T ss_pred             HHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCE
Confidence            444544444456799999999999998775    489999999854432        1   12333333   34456999


Q ss_pred             EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..++++  ...+|.++.|+|+|||.|++
T Consensus       155 v~~d~sf~s--l~~vL~e~~rvLkpGG~lv~  183 (291)
T 3hp7_A          155 ASIDVSFIS--LNLILPALAKILVDGGQVVA  183 (291)
T ss_dssp             EEECCSSSC--GGGTHHHHHHHSCTTCEEEE
T ss_pred             EEEEeeHhh--HHHHHHHHHHHcCcCCEEEE
Confidence            999888765  48899999999999999975

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.42  E-value=8.9e-13  Score=115.27  Aligned_cols=82  Identities=13%  Similarity=0.113  Sum_probs=69.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCC--CCCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~  198 (223)
                      ...+|||||||+|.++..++     .+++++|+..               .++.++.+|+...  |++ ++||+|++..+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~v  257 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQF  257 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEech
Confidence            56899999999999998886     3799999832               2578899999875  566 78999999999


Q ss_pred             ccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+++.   ..+|.++.++|+|||.|+|
T Consensus       258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i  285 (363)
T 3dp7_A          258 LDCFSEEEVISILTRVAQSIGKDSKVYI  285 (363)
T ss_dssp             STTSCHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            998833   4889999999999999975

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.42  E-value=6e-14  Score=110.29  Aligned_cols=94  Identities=12%  Similarity=0.051  Sum_probs=73.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCC----CC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT----PL  185 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~l----p~  185 (223)
                      +.+++.+....++.+|||+|||+|.++..++    .+|+|+|+++                .++.++.+|+.+.    ++
T Consensus        33 ~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  112 (187)
T 2fhp_A           33 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE  112 (187)
T ss_dssp             HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence            4455555443367899999999999988765    4799999996                2467888888653    22


Q ss_pred             CCCceeEEEEcccccCCCHHHHHHHH--HHccCCCCEEEc
Q 027441          186 NSSSVDVAVFCLSLMGINFPNYLQEA--QRVLKPRGEEQI  223 (223)
Q Consensus       186 ~~~sfD~Vi~~~~l~~~d~~~~l~e~--~rvLkpgG~lvi  223 (223)
                      .+.+||+|++...++..+...++..+  .++|+|||+|++
T Consensus       113 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~  152 (187)
T 2fhp_A          113 EKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVC  152 (187)
T ss_dssp             TTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEE
Confidence            36789999999887656778888888  899999999985

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.42  E-value=2.5e-13  Score=116.76  Aligned_cols=93  Identities=15%  Similarity=0.239  Sum_probs=74.7

Q ss_pred             HHHHHHHhc-cCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKD-HSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..+++.+.. ..+..+|||||||+|.++..++     .+++++|++.               .++.+..+|+...+++..
T Consensus       153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  232 (335)
T 2r3s_A          153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGND  232 (335)
T ss_dssp             HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC
T ss_pred             HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCC
Confidence            344555543 0367899999999999988876     3799999973               247889999988777655


Q ss_pred             ceeEEEEcccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                       ||+|++..++||++   ...++.++.++|+|||.|+|
T Consensus       233 -~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i  269 (335)
T 2r3s_A          233 -YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIV  269 (335)
T ss_dssp             -EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence             99999999999983   35999999999999998875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.42  E-value=9.7e-13  Score=113.35  Aligned_cols=80  Identities=16%  Similarity=0.147  Sum_probs=68.1

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      +..+|||||||+|.++..++     .+++++|+ +                .++.+..+|+. .|++. .||+|++..++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl  245 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL  245 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence            35799999999999998886     36899998 5                35788999997 45554 89999999999


Q ss_pred             cCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          200 MGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||++.   ..+|.++.++|+|||.|+|
T Consensus       246 h~~~~~~~~~~l~~~~~~L~pgG~l~i  272 (332)
T 3i53_A          246 HDWDDLSAVAILRRCAEAAGSGGVVLV  272 (332)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            99943   6999999999999999985

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.42  E-value=6.4e-13  Score=106.35  Aligned_cols=93  Identities=10%  Similarity=0.093  Sum_probs=73.0

Q ss_pred             chHHHHHHHHhccC--CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCC
Q 027441          127 LPVNIIVKWLKDHS--PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP  184 (223)
Q Consensus       127 ~~~~~i~~~l~~~~--~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp  184 (223)
                      .....+++.+....  ++.+|||+|||+|.++..++     .+|+|+|+++               .++.+..+|+..++
T Consensus        49 ~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  128 (207)
T 1jsx_A           49 MLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP  128 (207)
T ss_dssp             HHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC
T ss_pred             HHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC
Confidence            33455666655331  47899999999999888776     4799999996               24778899998876


Q ss_pred             CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          185 LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 ~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       +.++||+|++...   .++..++.++.++|+|||.|++
T Consensus       129 -~~~~~D~i~~~~~---~~~~~~l~~~~~~L~~gG~l~~  163 (207)
T 1jsx_A          129 -SEPPFDGVISRAF---ASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             -CCSCEEEEECSCS---SSHHHHHHHHTTSEEEEEEEEE
T ss_pred             -ccCCcCEEEEecc---CCHHHHHHHHHHhcCCCcEEEE
Confidence             4578999997542   3678999999999999999975

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.42  E-value=9.2e-13  Score=108.75  Aligned_cols=89  Identities=13%  Similarity=0.012  Sum_probs=70.0

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc---------CceEEEecCCC----------CCcEEEccCCCC---CCCC-C
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVSN----------DPSVIACDMSNT---PLNS-S  188 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~~----------~~~~~~~d~~~l---p~~~-~  188 (223)
                      +...+... +..+|||||||+|..+..|+         .+|+|+|+++.          ++.++.+|+..+   ++.. .
T Consensus        73 l~~~l~~~-~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~  151 (236)
T 2bm8_A           73 YHDMLWEL-RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREM  151 (236)
T ss_dssp             HHHHHHHH-CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             HHHHHHhc-CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccC
Confidence            33344433 46799999999999877753         47999999983          477889999874   5433 4


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHH-ccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQR-VLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~r-vLkpgG~lvi  223 (223)
                      +||+|++...  |.+.+.+|.++.| +|+|||+|++
T Consensus       152 ~fD~I~~d~~--~~~~~~~l~~~~r~~LkpGG~lv~  185 (236)
T 2bm8_A          152 AHPLIFIDNA--HANTFNIMKWAVDHLLEEGDYFII  185 (236)
T ss_dssp             CSSEEEEESS--CSSHHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCCEEEECCc--hHhHHHHHHHHHHhhCCCCCEEEE
Confidence            7999998765  5688999999998 9999999985

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.41  E-value=9.6e-14  Score=111.66  Aligned_cols=94  Identities=16%  Similarity=0.073  Sum_probs=71.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC-----------------CCCcEEEccCCCCC--CC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTP--LN  186 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------------~~~~~~~~d~~~lp--~~  186 (223)
                      +.+.+.+....++.+|||+|||+|.++..++    .+|+|+|+++                 .++.++.+|+..+.  +.
T Consensus        42 ~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  121 (201)
T 2ift_A           42 ETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ  121 (201)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC
T ss_pred             HHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc
Confidence            3444544432256899999999999988754    4799999996                 15678888886643  23


Q ss_pred             CCc-eeEEEEcccccCCCHHHHHHHH--HHccCCCCEEEc
Q 027441          187 SSS-VDVAVFCLSLMGINFPNYLQEA--QRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~s-fD~Vi~~~~l~~~d~~~~l~e~--~rvLkpgG~lvi  223 (223)
                      +++ ||+|++...++.-+...++..+  .++|+|||.|++
T Consensus       122 ~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i  161 (201)
T 2ift_A          122 NQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYV  161 (201)
T ss_dssp             SSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEE
Confidence            678 9999998886544677889999  778999999985

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.41  E-value=8e-14  Score=113.87  Aligned_cols=83  Identities=11%  Similarity=0.127  Sum_probs=68.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCC-C--CCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT-P--LNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~l-p--~~~~sfD~Vi~~~  197 (223)
                      .+.+|||||||+|.++..++     ..|+|+|+++               .++.++.+|+..+ +  +++++||.|++.+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            56899999999999998887     3599999996               4678889998774 3  7789999999886


Q ss_pred             cccCCC---------HHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGIN---------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d---------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...|..         .+.++.++.++|+|||.|+|
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i  148 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHM  148 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEE
Confidence            655431         13699999999999999975

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.41  E-value=4.9e-15  Score=121.74  Aligned_cols=92  Identities=16%  Similarity=0.139  Sum_probs=74.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCce
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      ..+...+....++.+|||+|||+|.++..++   .+|+|+|+++                .++.++.+|+..++ ++.+|
T Consensus        67 ~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  145 (241)
T 3gdh_A           67 EHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKA  145 (241)
T ss_dssp             HHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCC
T ss_pred             HHHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCC
Confidence            4455555544478899999999999999887   5899999997                25788899998776 56899


Q ss_pred             eEEEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441          191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       191 D~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                      |+|++...++|. +....+.++.++|+|||.++
T Consensus       146 D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i  178 (241)
T 3gdh_A          146 DVVFLSPPWGGPDYATAETFDIRTMMSPDGFEI  178 (241)
T ss_dssp             SEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHH
T ss_pred             CEEEECCCcCCcchhhhHHHHHHhhcCCcceeH
Confidence            999999999988 44557778889999998754

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.41  E-value=9.2e-13  Score=114.73  Aligned_cols=92  Identities=16%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCC
Q 027441          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLN  186 (223)
Q Consensus       128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~  186 (223)
                      ..+.+++.+. ..+..+|||||||+|.++..++     .+++++|+ +                .++.++.+|+...|++
T Consensus       178 ~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  255 (359)
T 1x19_A          178 AIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             HHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred             hHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence            3345555543 2367899999999999998886     37899999 6                2378899999888876


Q ss_pred             CCceeEEEEcccccCC-C--HHHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCLSLMGI-N--FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~-d--~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.  |+|++..++||+ +  ...+|.++.++|+|||.|+|
T Consensus       256 ~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i  293 (359)
T 1x19_A          256 EA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLI  293 (359)
T ss_dssp             CC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            54  999999999988 4  57999999999999999975

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.40  E-value=5.1e-14  Score=110.25  Aligned_cols=95  Identities=8%  Similarity=0.006  Sum_probs=73.0

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCC-CCCCC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSN-TPLNS  187 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~-lp~~~  187 (223)
                      .+.+++.+....++.+|||+|||+|.++..++    .+|+|+|+++                .++.++.+|+.. ++..+
T Consensus        19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (177)
T 2esr_A           19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT   98 (177)
T ss_dssp             HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred             HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence            35666666533467899999999999988776    4799999996                246778888766 34445


Q ss_pred             CceeEEEEcccccCCCHHHHHHHHH--HccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGINFPNYLQEAQ--RVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d~~~~l~e~~--rvLkpgG~lvi  223 (223)
                      +.||+|++...+++...+.++..+.  ++|+|||+|++
T Consensus        99 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~  136 (177)
T 2esr_A           99 GRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVC  136 (177)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEE
Confidence            6799999987765445667778887  99999999985

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.40  E-value=6.9e-13  Score=109.50  Aligned_cols=83  Identities=12%  Similarity=0.056  Sum_probs=68.1

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCC---CCCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSN---TPLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~---lp~~~~sfD~Vi~~~  197 (223)
                      .|+.+|||+|||+|.++..++      ++|+|+|+++             .++..+.+|...   .++..+++|+|++..
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~  155 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADV  155 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEec
Confidence            488999999999999999887      5799999997             467778777754   456778999998643


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      . ++-+...++.++.++|||||.|+|
T Consensus       156 ~-~~~~~~~~l~~~~r~LKpGG~lvI  180 (233)
T 4df3_A          156 A-QPEQAAIVVRNARFFLRDGGYMLM  180 (233)
T ss_dssp             C-CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             c-CChhHHHHHHHHHHhccCCCEEEE
Confidence            2 333677999999999999999875

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.40  E-value=4.7e-13  Score=109.03  Aligned_cols=89  Identities=16%  Similarity=0.099  Sum_probs=71.3

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeE
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      ...+++.+.. .++.+|||||||+|.++..++   .+|+|+|+++             .++.++.+|+......+++||+
T Consensus        59 ~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  137 (231)
T 1vbf_A           59 GIFMLDELDL-HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR  137 (231)
T ss_dssp             HHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHHHhcCC-CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccE
Confidence            3445555543 367899999999999998887   5899999997             1678889998763334678999


Q ss_pred             EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..+++|+.     .++.++|+|||.|++
T Consensus       138 v~~~~~~~~~~-----~~~~~~L~pgG~l~~  163 (231)
T 1vbf_A          138 VVVWATAPTLL-----CKPYEQLKEGGIMIL  163 (231)
T ss_dssp             EEESSBBSSCC-----HHHHHTEEEEEEEEE
T ss_pred             EEECCcHHHHH-----HHHHHHcCCCcEEEE
Confidence            99999999985     368999999999985

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.39  E-value=1.3e-12  Score=106.39  Aligned_cols=84  Identities=18%  Similarity=0.181  Sum_probs=68.0

Q ss_pred             CCCCeEEEECCc-chHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCC-CCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCG-DARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNT-PLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG-~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||+||| +|.++..++    .+|+|+|+++              .++.++.+|+..+ ++++++||+|++...+
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~  133 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY  133 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence            367899999999 999888776    5799999997              2578899997543 4567899999998776


Q ss_pred             cCCC--------------------HHHHHHHHHHccCCCCEEEc
Q 027441          200 MGIN--------------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d--------------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..                    ...++.++.++|+|||.|++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  177 (230)
T 3evz_A          134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVAL  177 (230)
T ss_dssp             C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence            6542                    37899999999999999975

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.39  E-value=1.1e-12  Score=114.51  Aligned_cols=90  Identities=19%  Similarity=0.269  Sum_probs=71.1

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..+++.+. ..+..+|||||||+|.++..++     .+++++|+ +                .++.++.+|+.. +++. 
T Consensus       172 ~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-  247 (374)
T 1qzz_A          172 EAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-  247 (374)
T ss_dssp             HHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-
T ss_pred             HHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-
Confidence            34444443 2367899999999999988886     37899998 5                268899999865 4443 


Q ss_pred             ceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      .||+|++..++||++.   ..++.++.++|+|||.|+|
T Consensus       248 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i  285 (374)
T 1qzz_A          248 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLV  285 (374)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            3999999999999843   3899999999999998875

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.39  E-value=6.2e-13  Score=108.85  Aligned_cols=77  Identities=18%  Similarity=0.205  Sum_probs=65.1

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCC----CCCCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSN----TPLNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~~  198 (223)
                      ++.+|||||||+|.++..++     .+|+|+|+++             .++.++.+|+..    +++. .+||+|+    
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~----  148 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIY----  148 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEE----
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEE----
Confidence            67899999999999888776     4799999996             357788899988    7776 7899999    


Q ss_pred             ccCC-CH---HHHHHHHHHccCCCCEEEc
Q 027441          199 LMGI-NF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~-d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                       +++ ++   ..++.++.++|+|||.|+|
T Consensus       149 -~~~~~~~~~~~~l~~~~~~LkpgG~l~i  176 (230)
T 1fbn_A          149 -EDVAQPNQAEILIKNAKWFLKKGGYGMI  176 (230)
T ss_dssp             -ECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -EecCChhHHHHHHHHHHHhCCCCcEEEE
Confidence             444 45   6789999999999999985

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.39  E-value=2.3e-13  Score=109.54  Aligned_cols=93  Identities=8%  Similarity=0.053  Sum_probs=71.9

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCC-CCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~-lp~~~~sf  190 (223)
                      .+++.+....++.+|||+|||+|.++..++    .+|+|+|+++               .++.++.+|+.. ++..+++|
T Consensus        44 ~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f  123 (202)
T 2fpo_A           44 TLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPH  123 (202)
T ss_dssp             HHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCE
T ss_pred             HHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCC
Confidence            344444432256899999999999988754    4799999997               267888888866 56667899


Q ss_pred             eEEEEcccccCCCHHHHHHHHHH--ccCCCCEEEc
Q 027441          191 DVAVFCLSLMGINFPNYLQEAQR--VLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~d~~~~l~e~~r--vLkpgG~lvi  223 (223)
                      |+|++...++.-+...++..+.+  +|+|||+|++
T Consensus       124 D~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i  158 (202)
T 2fpo_A          124 NIVFVDPPFRRGLLEETINLLEDNGWLADEALIYV  158 (202)
T ss_dssp             EEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEE
Confidence            99999888654477888888866  5999999975

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.39  E-value=1.1e-12  Score=113.92  Aligned_cols=79  Identities=23%  Similarity=0.295  Sum_probs=67.6

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CHH
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFP  205 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~  205 (223)
                      +..+|||||||+|.++..++     .+++++|+ +         .++.++.+|+.. +++.  ||+|++..++||+ +..
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d~~  263 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTDKD  263 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCHHH
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCHHH
Confidence            56899999999999998886     36999998 5         357888999966 5553  9999999999998 555


Q ss_pred             --HHHHHHHHccCC---CCEEEc
Q 027441          206 --NYLQEAQRVLKP---RGEEQI  223 (223)
Q Consensus       206 --~~l~e~~rvLkp---gG~lvi  223 (223)
                        .+|.++.++|+|   ||.|+|
T Consensus       264 ~~~~l~~~~~~L~p~~~gG~l~i  286 (352)
T 1fp2_A          264 CLRILKKCKEAVTNDGKRGKVTI  286 (352)
T ss_dssp             HHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCcEEEE
Confidence              999999999999   999875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.37  E-value=6.8e-13  Score=113.97  Aligned_cols=89  Identities=15%  Similarity=0.199  Sum_probs=72.4

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---Cc---eEEEecCC---------------CCCcEEEccCCCCCCCC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NK---VFSFDLVS---------------NDPSVIACDMSNTPLNS  187 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~---v~gvDis~---------------~~~~~~~~d~~~lp~~~  187 (223)
                      ...+++.+... ++.+|||||||+|.++..++   ..   |+|+|+++               .++.+..+|+...+..+
T Consensus        64 ~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~  142 (317)
T 1dl5_A           64 MALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF  142 (317)
T ss_dssp             HHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             HHHHHHhcCCC-CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC
Confidence            34555555443 77899999999999988886   34   99999996               34788899998765556


Q ss_pred             CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++||+|++..+++|+.     .++.++|+|||.|++
T Consensus       143 ~~fD~Iv~~~~~~~~~-----~~~~~~LkpgG~lvi  173 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIV  173 (317)
T ss_dssp             CCEEEEEECSBBSCCC-----HHHHHHEEEEEEEEE
T ss_pred             CCeEEEEEcCCHHHHH-----HHHHHhcCCCcEEEE
Confidence            8899999999999986     578899999999985

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.37  E-value=4.8e-13  Score=111.46  Aligned_cols=92  Identities=12%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             HHHHHhccC-CCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCC--CCCC
Q 027441          132 IVKWLKDHS-PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSS  188 (223)
Q Consensus       132 i~~~l~~~~-~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp--~~~~  188 (223)
                      ++..+.... ++.+|||+|||+|.++..++    .+|+|+|+++                .++.++.+|+.+++  ++++
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~  118 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKE  118 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTT
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccC
Confidence            444444444 67899999999999999887    3799999996                24788999998765  5578


Q ss_pred             ceeEEEEcccccCC---------------------CHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI---------------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~---------------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++.-.+.+.                     +...++..+.++|+|||.|++
T Consensus       119 ~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          119 RADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             CEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            99999996544321                     235799999999999999985

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.37  E-value=4.7e-13  Score=106.45  Aligned_cols=84  Identities=20%  Similarity=0.306  Sum_probs=68.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCC-CCCCceeEEEEc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTP-LNSSSVDVAVFC  196 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~  196 (223)
                      .++.+|||+|||+|.++..++      .+|+|+|+++                .++.++.+|+..++ +.+++||+|++.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  100 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN  100 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence            367899999999999888776      3799999996                25778899988775 567899999988


Q ss_pred             ccccC-----C-----CHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMG-----I-----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~-----~-----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+..     +     +...++.++.++|+|||.|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~  137 (197)
T 3eey_A          101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV  137 (197)
T ss_dssp             ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence            76511     1     335899999999999999975

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.37  E-value=1.9e-12  Score=112.15  Aligned_cols=93  Identities=16%  Similarity=0.173  Sum_probs=73.1

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCC-CCCCc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSS  189 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp-~~~~s  189 (223)
                      .++..+.......+|||||||+|.++..++     .+++++|+..               .++.++.+|+...+ +.+..
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  248 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGA  248 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCC
Confidence            344444333227899999999999998886     3789999943               24788999998876 13456


Q ss_pred             eeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++..++||++.   ..+|.++.++|+|||.|+|
T Consensus       249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i  285 (352)
T 3mcz_A          249 ADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLI  285 (352)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            999999999999843   6999999999999999975

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.36  E-value=6.1e-13  Score=109.83  Aligned_cols=83  Identities=17%  Similarity=0.274  Sum_probs=66.7

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------------CCCcEEEccCCC-CC--CCCCcee
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------------NDPSVIACDMSN-TP--LNSSSVD  191 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------------~~~~~~~~d~~~-lp--~~~~sfD  191 (223)
                      +..+|||||||+|.++..++     ..|+|+|+++                     .++.++.+|+.. +|  +++++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            56789999999999999887     3699999984                     357789999986 66  7889999


Q ss_pred             EEEEcccccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .|++.+.-.|.         ..+.++.++.++|+|||.|+|
T Consensus       126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~  166 (235)
T 3ckk_A          126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYT  166 (235)
T ss_dssp             EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEE
Confidence            99876544332         125799999999999999975

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.36  E-value=5e-13  Score=109.63  Aligned_cols=83  Identities=14%  Similarity=0.160  Sum_probs=63.4

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCCCCC-CCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNTPLN-SSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~lp~~-~~sfD~Vi~  195 (223)
                      ++.+|||||||+|.++..++     ..|+|+|+|+                   .++.+..+|+..+|.. .+.+|.|++
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~  103 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI  103 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence            67899999999999998887     3699999993                   2466888899888632 255666665


Q ss_pred             ccccc----CC--CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLM----GI--NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~----~~--d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+.+.    |.  +++.+|.++.|+|||||.|+|
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            54322    11  456899999999999999975

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.36  E-value=9.4e-13  Score=105.42  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=67.5

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+++               .++.+..+|+...+  +++||+|++...+++
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~~~  137 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFDLIVANILAEI  137 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEEEEEEESCHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCceEEEECCcHHH
Confidence            67899999999999988876    3799999997               23788899987643  589999999988776


Q ss_pred             CCHHHHHHHHHHccCCCCEEEc
Q 027441          202 INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                        ...++.++.++|+|||.|++
T Consensus       138 --~~~~l~~~~~~L~~gG~l~~  157 (205)
T 3grz_A          138 --LLDLIPQLDSHLNEDGQVIF  157 (205)
T ss_dssp             --HHHHGGGSGGGEEEEEEEEE
T ss_pred             --HHHHHHHHHHhcCCCCEEEE
Confidence              47889999999999999985

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.36  E-value=4.9e-13  Score=111.36  Aligned_cols=80  Identities=13%  Similarity=0.030  Sum_probs=67.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCC---CCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~---~~sfD~Vi~~~  197 (223)
                      ++.+|||||||+|..+..++     .+|+++|+++               .++.++.+|+++++..   +++||+|++..
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a  159 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA  159 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence            56899999999999888776     4799999997               3688899999877653   47999999865


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +   .++..++..+.++|+|||.|++
T Consensus       160 ~---~~~~~ll~~~~~~LkpgG~l~~  182 (249)
T 3g89_A          160 V---APLCVLSELLLPFLEVGGAAVA  182 (249)
T ss_dssp             S---CCHHHHHHHHGGGEEEEEEEEE
T ss_pred             c---CCHHHHHHHHHHHcCCCeEEEE
Confidence            4   3778999999999999999874

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.35  E-value=5.9e-13  Score=104.42  Aligned_cols=90  Identities=21%  Similarity=0.337  Sum_probs=70.8

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCC-Cc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNS-SS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~-~s  189 (223)
                      ..++..+.. .++.+|||+|||+|.++..++   .+|+++|+++                .++.+..+|+.. ++++ ..
T Consensus        23 ~~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~  100 (192)
T 1l3i_A           23 CLIMCLAEP-GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPD  100 (192)
T ss_dssp             HHHHHHHCC-CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCC
T ss_pred             HHHHHhcCC-CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCC
Confidence            344555543 377899999999999998887   5799999986                256777888765 3333 58


Q ss_pred             eeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++..+++  ++..++.++.++|+|||.|++
T Consensus       101 ~D~v~~~~~~~--~~~~~l~~~~~~l~~gG~l~~  132 (192)
T 1l3i_A          101 IDIAVVGGSGG--ELQEILRIIKDKLKPGGRIIV  132 (192)
T ss_dssp             EEEEEESCCTT--CHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCEEEECCchH--HHHHHHHHHHHhcCCCcEEEE
Confidence            99999988765  468999999999999999875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.35  E-value=4.9e-12  Score=109.92  Aligned_cols=90  Identities=17%  Similarity=0.248  Sum_probs=70.9

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..+++.+.. .+..+|||||||+|.++..++     ..++++|+ +                .++.++.+|+.. +++. 
T Consensus       173 ~~l~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-  248 (360)
T 1tw3_A          173 DAPAAAYDW-TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-  248 (360)
T ss_dssp             HHHHHHSCC-TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-
T ss_pred             HHHHHhCCC-ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-
Confidence            445555432 367899999999999988886     36888997 4                267889999865 3443 


Q ss_pred             ceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      .||+|++..++||++.   ..++.++.++|+|||.|+|
T Consensus       249 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i  286 (360)
T 1tw3_A          249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILI  286 (360)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            4999999999999843   3899999999999999875

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.35  E-value=5.6e-13  Score=109.99  Aligned_cols=92  Identities=13%  Similarity=0.192  Sum_probs=59.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCCCCCcE--------EEc---cCCCC---CCCCCcee
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSV--------IAC---DMSNT---PLNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~~~~--------~~~---d~~~l---p~~~~sfD  191 (223)
                      ..+++.+.....+.+|||||||+|.++..++    .+|+|+|+|+..+..        ...   ++..+   .+....||
T Consensus        26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  105 (232)
T 3opn_A           26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPS  105 (232)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCS
T ss_pred             HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCC
Confidence            3445555444456799999999999998876    389999999844332        111   11111   11111245


Q ss_pred             EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+.+..++.+  ...+|.++.|+|+|||.|++
T Consensus       106 ~~~~D~v~~~--l~~~l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A          106 FTSIDVSFIS--LDLILPPLYEILEKNGEVAA  135 (232)
T ss_dssp             EEEECCSSSC--GGGTHHHHHHHSCTTCEEEE
T ss_pred             EEEEEEEhhh--HHHHHHHHHHhccCCCEEEE
Confidence            5554444443  37899999999999999975

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.35  E-value=1.5e-12  Score=104.84  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=68.7

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..+++.+.. .++.+|||||||+|.++..++      .+|+++|+++               .++.+..+|+......++
T Consensus        67 ~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           67 GMMCELLDL-KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred             HHHHHhhCC-CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence            345555543 367899999999999888775      4799999996               356788888744322367


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++..+++|+.     .++.++|+|||.|++
T Consensus       146 ~fD~v~~~~~~~~~~-----~~~~~~L~pgG~lv~  175 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIP-----EPLIRQLKDGGKLLM  175 (215)
T ss_dssp             CEEEEEESSBBSSCC-----HHHHHTEEEEEEEEE
T ss_pred             CeeEEEECCchHHHH-----HHHHHHcCCCcEEEE
Confidence            899999999999886     488999999999985

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.35  E-value=1.6e-13  Score=109.70  Aligned_cols=92  Identities=17%  Similarity=0.116  Sum_probs=64.9

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCCC--------------CCcEEEccCCCCCCCC---
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN--------------DPSVIACDMSNTPLNS---  187 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~--------------~~~~~~~d~~~lp~~~---  187 (223)
                      +.+++.+....++.+|||+|||+|.++..++     .+|+|+|+++.              ++.++.+|+.. ++++   
T Consensus        19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~   97 (215)
T 4dzr_A           19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAE   97 (215)
T ss_dssp             HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHH
T ss_pred             HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhh
Confidence            3455555442477899999999999988877     37999999983              34555666655 4554   


Q ss_pred             --CceeEEEEcccccCC-C--------------------------HHHHHHHHHHccCCCCE-EE
Q 027441          188 --SSVDVAVFCLSLMGI-N--------------------------FPNYLQEAQRVLKPRGE-EQ  222 (223)
Q Consensus       188 --~sfD~Vi~~~~l~~~-d--------------------------~~~~l~e~~rvLkpgG~-lv  222 (223)
                        ++||+|++...+++. +                          ...++.++.++|+|||+ ++
T Consensus        98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  162 (215)
T 4dzr_A           98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF  162 (215)
T ss_dssp             TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred             ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence              899999997555432 1                          16788999999999999 54

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.34  E-value=1.2e-12  Score=112.12  Aligned_cols=82  Identities=15%  Similarity=0.106  Sum_probs=63.3

Q ss_pred             CCCCeEEEECCcchHHHHHhcCc--eEEEec----CC-------------CCCcEEEc-cCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVKNK--VFSFDL----VS-------------NDPSVIAC-DMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la~~--v~gvDi----s~-------------~~~~~~~~-d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||||||+|.++..++..  |+|+|+    ++             .++.++.+ |+..+|  ..+||+|+|..++
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~~  158 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIGE  158 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEECCcc
Confidence            46789999999999999999854  999999    33             12455666 776665  5689999998876


Q ss_pred             c---CC-CHH---HHHHHHHHccCCCCEEEc
Q 027441          200 M---GI-NFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~---~~-d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                      +   +. +..   .+|.++.++|+|||.|++
T Consensus       159 ~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~  189 (305)
T 2p41_A          159 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  189 (305)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             ccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            4   21 333   578999999999999875

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.34  E-value=9.1e-13  Score=107.11  Aligned_cols=82  Identities=7%  Similarity=0.100  Sum_probs=65.7

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CCC-C----CCceeE
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TPL-N----SSSVDV  192 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp~-~----~~sfD~  192 (223)
                      ++.+|||||||+|..+..++      .+|+++|+++                .++.++.+|+.. ++. .    .++||+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            67899999999999998886      3799999997                247788888744 332 1    278999


Q ss_pred             EEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++....++. +...++..+ ++|+|||+|++
T Consensus       138 V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~  168 (221)
T 3u81_A          138 VFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLA  168 (221)
T ss_dssp             EEECSCGGGHHHHHHHHHHT-TCCCTTCEEEE
T ss_pred             EEEcCCcccchHHHHHHHhc-cccCCCeEEEE
Confidence            9998877766 555777777 99999999985

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.33  E-value=2.3e-12  Score=105.68  Aligned_cols=81  Identities=12%  Similarity=0.094  Sum_probs=67.2

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCC-C-CCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNT-P-LNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~l-p-~~~~sfD~Vi~~~  197 (223)
                      ++.+|||||||+|..+..++     .+|+++|+++                .++.++.+|+... + ..+++||+|++..
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~  150 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA  150 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence            67899999999999998887     4799999996                2678999998664 4 3368999999764


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .  .-+...++.++.++|+|||+|++
T Consensus       151 ~--~~~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          151 A--KAQSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             T--SSSHHHHHHHHGGGEEEEEEEEE
T ss_pred             c--HHHHHHHHHHHHHhcCCCeEEEE
Confidence            4  22678899999999999999985

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.33  E-value=1.6e-12  Score=101.30  Aligned_cols=87  Identities=14%  Similarity=0.227  Sum_probs=71.8

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCcee
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      ..++..+... ++.+|||+|||+|.++..++   .+|+|+|+++               .++.++.+|+.. ++++++||
T Consensus        25 ~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D  102 (183)
T 2yxd_A           25 AVSIGKLNLN-KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFN  102 (183)
T ss_dssp             HHHHHHHCCC-TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCS
T ss_pred             HHHHHHcCCC-CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCc
Confidence            4555555433 67899999999999999887   5899999997               357788888877 66678999


Q ss_pred             EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++..+   .++..++.++.++  |||.|++
T Consensus       103 ~i~~~~~---~~~~~~l~~~~~~--~gG~l~~  129 (183)
T 2yxd_A          103 KAFIGGT---KNIEKIIEILDKK--KINHIVA  129 (183)
T ss_dssp             EEEECSC---SCHHHHHHHHHHT--TCCEEEE
T ss_pred             EEEECCc---ccHHHHHHHHhhC--CCCEEEE
Confidence            9999988   5778999999999  9999975

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.33  E-value=1.5e-12  Score=114.73  Aligned_cols=91  Identities=18%  Similarity=0.222  Sum_probs=71.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC------------------CCCcEEEccCCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------------NDPSVIACDMSNTPLNS  187 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------------~~~~~~~~d~~~lp~~~  187 (223)
                      .+++.+... ++.+|||+|||+|.++..++     .+|+|+|+++                  .++.+..+|+.. ++++
T Consensus       213 ~ll~~l~~~-~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~  290 (375)
T 4dcm_A          213 FFMQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP  290 (375)
T ss_dssp             HHHHTCCCS-CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCT
T ss_pred             HHHHhCccc-CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCC
Confidence            456665544 55899999999999998886     4799999997                  135668899877 5667


Q ss_pred             CceeEEEEcccccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGI------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++||+|++...+|+.      ....++.++.++|+|||.|+|
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i  332 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI  332 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence            899999999998864      123789999999999999986

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.32  E-value=1.7e-12  Score=106.26  Aligned_cols=81  Identities=15%  Similarity=0.148  Sum_probs=65.9

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCC---CCCCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSN---TPLNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~---lp~~~~sfD~Vi~~~~  198 (223)
                      ++.+|||+|||+|.++..++      .+|+|+|+++             .++.++.+|+..   +++.+++||+|++...
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~  156 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA  156 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence            67899999999999888775      4799999994             467888999987   4556789999998655


Q ss_pred             ccCCCH-HHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINF-PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~-~~~l~e~~rvLkpgG~lvi  223 (223)
                        ..+. ..++.++.++|+|||.|+|
T Consensus       157 --~~~~~~~~~~~~~~~LkpgG~l~i  180 (233)
T 2ipx_A          157 --QPDQTRIVALNAHTFLRNGGHFVI  180 (233)
T ss_dssp             --CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             --CccHHHHHHHHHHHHcCCCeEEEE
Confidence              2233 4568889999999999985

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.31  E-value=4.3e-12  Score=102.13  Aligned_cols=90  Identities=12%  Similarity=0.028  Sum_probs=68.7

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-CCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-PLNS  187 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p~~~  187 (223)
                      .++..+....+..+|||||||+|..+..++      .+|+++|+++                .++.++.+|+... +..+
T Consensus        46 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  125 (210)
T 3c3p_A           46 RLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQR  125 (210)
T ss_dssp             HHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCC
T ss_pred             HHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCC
Confidence            344444333366899999999999988886      3799999997                2467888888553 4445


Q ss_pred             CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      + ||+|++...  ..+...++.++.++|+|||+|++
T Consensus       126 ~-fD~v~~~~~--~~~~~~~l~~~~~~LkpgG~lv~  158 (210)
T 3c3p_A          126 D-IDILFMDCD--VFNGADVLERMNRCLAKNALLIA  158 (210)
T ss_dssp             S-EEEEEEETT--TSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             C-CCEEEEcCC--hhhhHHHHHHHHHhcCCCeEEEE
Confidence            6 999998743  23788999999999999999975

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.31  E-value=5.5e-12  Score=109.82  Aligned_cols=80  Identities=19%  Similarity=0.256  Sum_probs=67.9

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CHH-
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFP-  205 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~-  205 (223)
                      +..+|||||||+|.++..++     .+++++|++.        .++.++.+|+.. |++  .||+|++..++||+ |.. 
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~  269 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQS  269 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHHH
Confidence            56899999999999998886     3688999843        357888999977 665  49999999999988 544 


Q ss_pred             -HHHHHHHHccCC---CCEEEc
Q 027441          206 -NYLQEAQRVLKP---RGEEQI  223 (223)
Q Consensus       206 -~~l~e~~rvLkp---gG~lvi  223 (223)
                       .+|.++.++|+|   ||.|+|
T Consensus       270 ~~~l~~~~~~L~p~~~gG~l~i  291 (358)
T 1zg3_A          270 LKILKNSKEAISHKGKDGKVII  291 (358)
T ss_dssp             HHHHHHHHHHTGGGGGGCEEEE
T ss_pred             HHHHHHHHHhCCCCCCCcEEEE
Confidence             999999999999   998875

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.31  E-value=1.3e-12  Score=113.48  Aligned_cols=92  Identities=18%  Similarity=0.259  Sum_probs=73.4

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCCCCCCc
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      ...+++.+... +..+|||||||+|.++..++     .+|+++|+++              ....++.+|+...+  +++
T Consensus       185 ~~~ll~~l~~~-~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~  261 (343)
T 2pjd_A          185 SQLLLSTLTPH-TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGR  261 (343)
T ss_dssp             HHHHHHHSCTT-CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSC
T ss_pred             HHHHHHhcCcC-CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCC
Confidence            45566666433 46799999999999998886     3799999997              23456778876644  678


Q ss_pred             eeEEEEcccccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++...+|+.      +...++.++.++|+|||.|+|
T Consensus       262 fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i  301 (343)
T 2pjd_A          262 FDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI  301 (343)
T ss_dssp             EEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence            9999999999862      456999999999999999985

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.31  E-value=3.8e-12  Score=104.04  Aligned_cols=90  Identities=12%  Similarity=0.089  Sum_probs=70.4

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCC-CCC--
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNT-PLN--  186 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~l-p~~--  186 (223)
                      .+...+... ++.+|||||||+|..+..++     .+|+++|+++                .++.++.+|+... +..  
T Consensus        45 ~l~~~~~~~-~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  123 (233)
T 2gpy_A           45 SLLHLLKMA-APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLEL  123 (233)
T ss_dssp             HHHHHHHHH-CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTT
T ss_pred             HHHHHHhcc-CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhccc
Confidence            333344333 67899999999999888776     4799999996                2477888888663 432  


Q ss_pred             CCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++||+|++....+  ++..++..+.++|+|||.|++
T Consensus       124 ~~~fD~I~~~~~~~--~~~~~l~~~~~~L~pgG~lv~  158 (233)
T 2gpy_A          124 YPLFDVLFIDAAKG--QYRRFFDMYSPMVRPGGLILS  158 (233)
T ss_dssp             SCCEEEEEEEGGGS--CHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCccEEEECCCHH--HHHHHHHHHHHHcCCCeEEEE
Confidence            57899999877753  778999999999999999985

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.30  E-value=5e-13  Score=103.34  Aligned_cols=93  Identities=11%  Similarity=0.106  Sum_probs=69.9

Q ss_pred             HHHHHHHhcc-CCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCC-C-C--CC
Q 027441          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNT-P-L--NS  187 (223)
Q Consensus       130 ~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~l-p-~--~~  187 (223)
                      +.++..+... +++.+|||+|||+|.++..++   ..|+|+|+++              .++.++.+|+.+. + +  ..
T Consensus        29 ~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (171)
T 1ws6_A           29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQG  108 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccC
Confidence            3445555432 256899999999999998887   4599999997              1678888887652 2 1  13


Q ss_pred             CceeEEEEcccccCCCHHHHHHHHH--HccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGINFPNYLQEAQ--RVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d~~~~l~e~~--rvLkpgG~lvi  223 (223)
                      .+||+|++...++ .+.+.++..+.  ++|+|||.|++
T Consensus       109 ~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~~  145 (171)
T 1ws6_A          109 ERFTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             CCEEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred             CceEEEEECCCCc-hhHHHHHHHHHhhcccCCCcEEEE
Confidence            4799999998876 55567777777  99999999985

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.30  E-value=6.4e-13  Score=106.22  Aligned_cols=82  Identities=15%  Similarity=0.112  Sum_probs=65.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCCC------------CC--cEEEccCCCCCCCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------DP--SVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~------------~~--~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++..+|||||||+|.++..++     .+|+|+|+++.            .+  .+..+|.... .+.++||+|++..++|
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LH  126 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLP  126 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHH
Confidence            367899999999999999994     58999999971            11  2444555443 3568899999999999


Q ss_pred             CC-CHHHHHHHHHHccCCCCEEE
Q 027441          201 GI-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       201 ~~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                      ++ +....+..+.+.|+|||+||
T Consensus       127 lL~~~~~al~~v~~~L~pggvfI  149 (200)
T 3fzg_A          127 VLKQQDVNILDFLQLFHTQNFVI  149 (200)
T ss_dssp             HHHHTTCCHHHHHHTCEEEEEEE
T ss_pred             hhhhhHHHHHHHHHHhCCCCEEE
Confidence            99 55577779999999999987

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.29  E-value=1.1e-12  Score=108.75  Aligned_cols=81  Identities=16%  Similarity=0.190  Sum_probs=65.1

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-CCC-----CCceeE
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-PLN-----SSSVDV  192 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p~~-----~~sfD~  192 (223)
                      +..+|||||||+|..+..++      .+|+++|+++                .++.++.+|+... +..     +++||+
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~  139 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF  139 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence            67899999999999888876      3799999997                2567788887553 211     478999


Q ss_pred             EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++...  .-+...++.++.++|+|||+|++
T Consensus       140 V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~  168 (242)
T 3r3h_A          140 IFIDAD--KTNYLNYYELALKLVTPKGLIAI  168 (242)
T ss_dssp             EEEESC--GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEcCC--hHHhHHHHHHHHHhcCCCeEEEE
Confidence            998765  22677899999999999999985

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.29  E-value=6.8e-13  Score=103.86  Aligned_cols=73  Identities=19%  Similarity=0.174  Sum_probs=62.4

Q ss_pred             CCCCeEEEECCcchHHHHHhcCceEEEecCC-----------CCCcEEEccCCCCCC---CCCceeEEEEcccccCC--C
Q 027441          140 SPSLVIADFGCGDARLAKSVKNKVFSFDLVS-----------NDPSVIACDMSNTPL---NSSSVDVAVFCLSLMGI--N  203 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la~~v~gvDis~-----------~~~~~~~~d~~~lp~---~~~sfD~Vi~~~~l~~~--d  203 (223)
                      .++.+|||||||...           +|+|+           .++.+..+|+..+++   ++++||+|++..++||+  +
T Consensus        11 ~~g~~vL~~~~g~v~-----------vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~   79 (176)
T 2ld4_A           11 SAGQFVAVVWDKSSP-----------VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLH   79 (176)
T ss_dssp             CTTSEEEEEECTTSC-----------HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCC
T ss_pred             CCCCEEEEecCCcee-----------eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccC
Confidence            478999999999732           33332           358899999999887   78999999999999998  8


Q ss_pred             HHHHHHHHHHccCCCCEEEc
Q 027441          204 FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +..++.+++|+|||||.|++
T Consensus        80 ~~~~l~~~~r~LkpgG~l~~   99 (176)
T 2ld4_A           80 SAEILAEIARILRPGGCLFL   99 (176)
T ss_dssp             CHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEE
Confidence            89999999999999999985

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.29  E-value=3e-12  Score=106.21  Aligned_cols=91  Identities=12%  Similarity=0.054  Sum_probs=69.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CCCC-
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TPLN-  186 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp~~-  186 (223)
                      .++..+....++.+|||||||+|..+..++      .+|+++|+++                .++.++.+|+.. ++.. 
T Consensus        53 ~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~  132 (248)
T 3tfw_A           53 QFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG  132 (248)
T ss_dssp             HHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC
T ss_pred             HHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC
Confidence            444444333367899999999999988886      3799999997                257888898855 3322 


Q ss_pred             -CCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          187 -SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 -~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       .++||+|++...  .-+.+.++.++.++|+|||+|++
T Consensus       133 ~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~  168 (248)
T 3tfw_A          133 ECPAFDLIFIDAD--KPNNPHYLRWALRYSRPGTLIIG  168 (248)
T ss_dssp             SCCCCSEEEECSC--GGGHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCCCeEEEEECCc--hHHHHHHHHHHHHhcCCCeEEEE
Confidence             348999998653  22667899999999999999985

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.28  E-value=1.1e-11  Score=102.38  Aligned_cols=82  Identities=13%  Similarity=0.154  Sum_probs=63.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCCCC---CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~  197 (223)
                      .++.+|||+|||+|.++..++      ++|+|+|+++             .++.++.+|+...+   ...++||+|++..
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~  154 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI  154 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence            478999999999999988776      3899999997             46788899987643   1246899999886


Q ss_pred             cccCCCHHHH-HHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNY-LQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~-l~e~~rvLkpgG~lvi  223 (223)
                      +.  .+...+ +..+.++|||||.|++
T Consensus       155 a~--~~~~~il~~~~~~~LkpGG~lvi  179 (232)
T 3id6_C          155 AQ--PDQTDIAIYNAKFFLKVNGDMLL  179 (232)
T ss_dssp             CC--TTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CC--hhHHHHHHHHHHHhCCCCeEEEE
Confidence            54  344444 4556669999999985

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.28  E-value=5.6e-12  Score=103.33  Aligned_cols=88  Identities=20%  Similarity=0.270  Sum_probs=68.8

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCC-
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS-  188 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~-  188 (223)
                      ...+++.+.. .++.+|||||||+|.++..++    .+|+++|+++               .++.+..+|+ ..++++. 
T Consensus        80 ~~~~~~~l~~-~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~  157 (235)
T 1jg1_A           80 VAIMLEIANL-KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKA  157 (235)
T ss_dssp             HHHHHHHHTC-CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGC
T ss_pred             HHHHHHhcCC-CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCC
Confidence            3455555543 367899999999999888876    5899999996               2567888887 4445444 


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .||+|++..+++++.     .++.++|+|||.|+|
T Consensus       158 ~fD~Ii~~~~~~~~~-----~~~~~~L~pgG~lvi  187 (235)
T 1jg1_A          158 PYDVIIVTAGAPKIP-----EPLIEQLKIGGKLII  187 (235)
T ss_dssp             CEEEEEECSBBSSCC-----HHHHHTEEEEEEEEE
T ss_pred             CccEEEECCcHHHHH-----HHHHHhcCCCcEEEE
Confidence            499999999998875     378999999999985

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.28  E-value=7.8e-12  Score=102.20  Aligned_cols=91  Identities=10%  Similarity=0.049  Sum_probs=68.3

Q ss_pred             HHHHHHhccCCCC---eEEEECCcchHHHHHhc------CceEEEecCC---------------C--CCcEEEccCCCC-
Q 027441          131 IIVKWLKDHSPSL---VIADFGCGDARLAKSVK------NKVFSFDLVS---------------N--DPSVIACDMSNT-  183 (223)
Q Consensus       131 ~i~~~l~~~~~~~---~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~--~~~~~~~d~~~l-  183 (223)
                      .++..+....+..   +|||||||+|..+..++      .+|+++|+++               .  ++.++.+|+.++ 
T Consensus        43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l  122 (221)
T 3dr5_A           43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM  122 (221)
T ss_dssp             HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred             HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence            3444444332334   99999999999888776      4799999997               1  467788887553 


Q ss_pred             -CCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          184 -PLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       184 -p~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       .+.+++||+|++....  .+...++.++.++|+|||+|++
T Consensus       123 ~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          123 SRLANDSYQLVFGQVSP--MDLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             GGSCTTCEEEEEECCCT--TTHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHhcCCCcCeEEEcCcH--HHHHHHHHHHHHHcCCCcEEEE
Confidence             2446899999986542  2677899999999999999985

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.28  E-value=2.8e-12  Score=116.35  Aligned_cols=82  Identities=20%  Similarity=0.295  Sum_probs=69.0

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+++               .++.++.+|+.+++++ +.||+|++..+++|
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~  236 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM  236 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHH
T ss_pred             CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHh
Confidence            67899999999999988876    4799999986               3578899999988765 58999999888776


Q ss_pred             C---CHHHHHHHHHHccCCCCEEEc
Q 027441          202 I---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +   +...++.++.++|+|||.|++
T Consensus       237 ~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          237 LFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             HTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             cCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            6   335777788999999999974

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.28  E-value=6.5e-12  Score=104.97  Aligned_cols=85  Identities=15%  Similarity=0.264  Sum_probs=67.6

Q ss_pred             cCCCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------C--------CCcEEEccCCCC-------CCCC
Q 027441          139 HSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------N--------DPSVIACDMSNT-------PLNS  187 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------~--------~~~~~~~d~~~l-------p~~~  187 (223)
                      ..++.+|||+|||+|.++..++     .+|+|+|+++           .        ++.++.+|+.++       ++++
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            3367899999999999988876     3799999986           1        267889999887       3667


Q ss_pred             CceeEEEEccccc----------------CC---CHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLM----------------GI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~----------------~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++||+|++.-.+.                |.   +...++..+.++|+|||.|++
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence            8999999973322                11   477999999999999999975

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.28  E-value=4.7e-12  Score=113.27  Aligned_cols=93  Identities=10%  Similarity=0.029  Sum_probs=68.5

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC------------------------CCCcEEEccC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------------------NDPSVIACDM  180 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------------------~~~~~~~~d~  180 (223)
                      ..+++.+.. .++.+|||||||+|.++..++     .+|+|+|+++                        .++.++.+|.
T Consensus       232 ~~ml~~l~l-~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~  310 (433)
T 1u2z_A          232 SDVYQQCQL-KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS  310 (433)
T ss_dssp             HHHHHHTTC-CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred             HHHHHhcCC-CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence            344444433 367899999999999988877     3699999986                        1345666654


Q ss_pred             CCC--CC--CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          181 SNT--PL--NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       181 ~~l--p~--~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...  ++  ..++||+|++..++.+-+++.+|.++.++|+|||.|++
T Consensus       311 ~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi  357 (433)
T 1u2z_A          311 FVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS  357 (433)
T ss_dssp             STTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             cccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEE
Confidence            322  22  24789999987776433778899999999999999985

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.27  E-value=5.3e-12  Score=102.56  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=70.3

Q ss_pred             HHHHHHh-ccCCCCeEEEECCcchHHHHHhc---C-------ceEEEecCC--------------------CCCcEEEcc
Q 027441          131 IIVKWLK-DHSPSLVIADFGCGDARLAKSVK---N-------KVFSFDLVS--------------------NDPSVIACD  179 (223)
Q Consensus       131 ~i~~~l~-~~~~~~~ILDiGcG~G~~a~~la---~-------~v~gvDis~--------------------~~~~~~~~d  179 (223)
                      .+++.+. ...++.+|||||||+|.++..++   .       +|+++|+++                    .++.++.+|
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            4455553 23467899999999999888776   3       899999986                    146788888


Q ss_pred             CCCCC----CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          180 MSNTP----LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       180 ~~~lp----~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +...+    +..++||+|++..+++++     +.++.++|+|||.|++
T Consensus       149 ~~~~~~~~~~~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~lv~  191 (227)
T 2pbf_A          149 IYQVNEEEKKELGLFDAIHVGASASEL-----PEILVDLLAENGKLII  191 (227)
T ss_dssp             GGGCCHHHHHHHCCEEEEEECSBBSSC-----CHHHHHHEEEEEEEEE
T ss_pred             hHhcccccCccCCCcCEEEECCchHHH-----HHHHHHhcCCCcEEEE
Confidence            87755    556789999999998875     4788999999999985

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.27  E-value=9.3e-12  Score=104.56  Aligned_cols=82  Identities=13%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccc--
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS--  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~--  198 (223)
                      ++.+|||+|||+|.++..++     .+|+|+|+|+               .++.++.+|+... +++++||+|++...  
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYI  187 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCB
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCCC
Confidence            56899999999999988876     4799999996               2578888888763 44678999999843  


Q ss_pred             -----------ccCC-------------CHHHHHHHHHHccCCCCEEEc
Q 027441          199 -----------LMGI-------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 -----------l~~~-------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                                 ++|.             +...++.++.++|+|||+|++
T Consensus       188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~  236 (276)
T 2b3t_A          188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL  236 (276)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                       3322             235889999999999999975

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.27  E-value=6.4e-12  Score=106.04  Aligned_cols=79  Identities=15%  Similarity=0.195  Sum_probs=66.5

Q ss_pred             CCCeEEEECCcchHHHHHhc---C-ceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK---N-KVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~-~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||+|||+|.++..++   . +|+|+|+++                ..+.++.+|+..++. +.+||+|++.... 
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~-  202 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV-  202 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS-
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCch-
Confidence            67899999999999998887   3 599999997                236789999998876 7899999986442 


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                        +...++.++.++|+|||+|++
T Consensus       203 --~~~~~l~~~~~~LkpgG~l~~  223 (278)
T 2frn_A          203 --RTHEFIPKALSIAKDGAIIHY  223 (278)
T ss_dssp             --SGGGGHHHHHHHEEEEEEEEE
T ss_pred             --hHHHHHHHHHHHCCCCeEEEE
Confidence              446899999999999999975

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.27  E-value=4e-12  Score=106.82  Aligned_cols=86  Identities=14%  Similarity=0.213  Sum_probs=66.6

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      .++..+.. .++.+|||+|||+|.++..++      .+|+++|+++                .++.+..+|+.. +++++
T Consensus       101 ~~~~~~~~-~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~  178 (275)
T 1yb2_A          101 YIIMRCGL-RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQ  178 (275)
T ss_dssp             -----CCC-CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSC
T ss_pred             HHHHHcCC-CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCC
Confidence            34444433 367899999999999887765      4799999986                146788889877 66778


Q ss_pred             ceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++     ++ ++..++.++.++|+|||.|++
T Consensus       179 ~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i  209 (275)
T 1yb2_A          179 MYDAVIA-----DIPDPWNHVQKIASMMKPGSVATF  209 (275)
T ss_dssp             CEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEE
T ss_pred             CccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEE
Confidence            9999998     34 778999999999999999985

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.27  E-value=1.2e-11  Score=100.57  Aligned_cols=81  Identities=20%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCCCC---CCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~~  198 (223)
                      ++.+|||+|||+|.++..++      .+|+|+|+++             .++.++.+|+....   ....+||+|++...
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~  152 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence            67899999999999888776      4799999997             46788999997732   12368999997655


Q ss_pred             ccCCCHH-HHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFP-NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~-~~l~e~~rvLkpgG~lvi  223 (223)
                        +.+.. .++.++.++|+|||.|++
T Consensus       153 --~~~~~~~~l~~~~~~LkpgG~l~~  176 (227)
T 1g8a_A          153 --QPTQAKILIDNAEVYLKRGGYGMI  176 (227)
T ss_dssp             --STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             --CHhHHHHHHHHHHHhcCCCCEEEE
Confidence              33333 559999999999999975

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.26  E-value=6.9e-12  Score=101.81  Aligned_cols=88  Identities=17%  Similarity=0.148  Sum_probs=69.7

Q ss_pred             HHHHHHh-ccCCCCeEEEECCcchHHHHHhc------CceEEEecCC--------------------CCCcEEEccCCCC
Q 027441          131 IIVKWLK-DHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------------NDPSVIACDMSNT  183 (223)
Q Consensus       131 ~i~~~l~-~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------------~~~~~~~~d~~~l  183 (223)
                      .++..+. ...++.+|||||||+|.++..++      .+|+++|+++                    .++.+..+|+...
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  145 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  145 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence            4455554 23467899999999999888775      3799999986                    1567888888766


Q ss_pred             CCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          184 PLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       184 p~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +..+++||+|++..+++++     +.++.++|+|||.|++
T Consensus       146 ~~~~~~fD~i~~~~~~~~~-----~~~~~~~LkpgG~lv~  180 (226)
T 1i1n_A          146 YAEEAPYDAIHVGAAAPVV-----PQALIDQLKPGGRLIL  180 (226)
T ss_dssp             CGGGCCEEEEEECSBBSSC-----CHHHHHTEEEEEEEEE
T ss_pred             cccCCCcCEEEECCchHHH-----HHHHHHhcCCCcEEEE
Confidence            6567889999999998775     3688999999999985

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.26  E-value=3.7e-12  Score=105.34  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=65.1

Q ss_pred             CCCeEEEECCcchHHHHHhc-------CceEEEecCC-----------CC------------------------------
Q 027441          141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS-----------ND------------------------------  172 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~-----------~~------------------------------  172 (223)
                      ++.+|||+|||+|.++..++       .+|+|+|+++           ..                              
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            45799999999999887765       3699999996           12                              


Q ss_pred             ---Cc-------------EEEccCCCCCC-----CCCceeEEEEcccccCC-C---------HHHHHHHHHHccCCCCEE
Q 027441          173 ---PS-------------VIACDMSNTPL-----NSSSVDVAVFCLSLMGI-N---------FPNYLQEAQRVLKPRGEE  221 (223)
Q Consensus       173 ---~~-------------~~~~d~~~lp~-----~~~sfD~Vi~~~~l~~~-d---------~~~~l~e~~rvLkpgG~l  221 (223)
                         +.             +..+|+.....     ...+||+|++...+++. +         ...++.++.++|+|||+|
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence               45             88899876431     34589999998776654 2         348999999999999999


Q ss_pred             Ec
Q 027441          222 QI  223 (223)
Q Consensus       222 vi  223 (223)
                      +|
T Consensus       211 ~~  212 (250)
T 1o9g_A          211 AV  212 (250)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.26  E-value=6.5e-12  Score=102.32  Aligned_cols=88  Identities=13%  Similarity=0.185  Sum_probs=69.5

Q ss_pred             HHHHHHHh-ccCCCCeEEEECCcchHHHHHhc----C-------ceEEEecCC--------------------CCCcEEE
Q 027441          130 NIIVKWLK-DHSPSLVIADFGCGDARLAKSVK----N-------KVFSFDLVS--------------------NDPSVIA  177 (223)
Q Consensus       130 ~~i~~~l~-~~~~~~~ILDiGcG~G~~a~~la----~-------~v~gvDis~--------------------~~~~~~~  177 (223)
                      ..+++.+. ...++.+|||||||+|.++..++    .       +|+++|+++                    .++.+..
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  151 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  151 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence            44555554 23467899999999999888776    2       799999996                    1567888


Q ss_pred             ccCCCCCCCC-CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          178 CDMSNTPLNS-SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       178 ~d~~~lp~~~-~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+.. ++++ ++||+|++..+++|+.     .++.++|+|||.|++
T Consensus       152 ~d~~~-~~~~~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG~lvi  192 (227)
T 1r18_A          152 GDGRK-GYPPNAPYNAIHVGAAAPDTP-----TELINQLASGGRLIV  192 (227)
T ss_dssp             SCGGG-CCGGGCSEEEEEECSCBSSCC-----HHHHHTEEEEEEEEE
T ss_pred             CCccc-CCCcCCCccEEEECCchHHHH-----HHHHHHhcCCCEEEE
Confidence            88876 4444 7899999999998864     688999999999985

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.25  E-value=9.7e-12  Score=102.61  Aligned_cols=88  Identities=17%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      .++..+.. .++.+|||+|||+|.++..++      .+|+++|+++                .++.+..+|+...+++++
T Consensus        87 ~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  165 (258)
T 2pwy_A           87 AMVTLLDL-APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA  165 (258)
T ss_dssp             HHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred             HHHHHcCC-CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence            44444443 377899999999999887765      4799999986                246788899988888888


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++.    .-++..++.++.++|+|||.|++
T Consensus       166 ~~D~v~~~----~~~~~~~l~~~~~~L~~gG~l~~  196 (258)
T 2pwy_A          166 AYDGVALD----LMEPWKVLEKAALALKPDRFLVA  196 (258)
T ss_dssp             CEEEEEEE----SSCGGGGHHHHHHHEEEEEEEEE
T ss_pred             CcCEEEEC----CcCHHHHHHHHHHhCCCCCEEEE
Confidence            99999973    22667999999999999999975

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.25  E-value=1.3e-11  Score=106.56  Aligned_cols=89  Identities=20%  Similarity=0.279  Sum_probs=66.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC--------------------------CCCcEEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------------------NDPSVIA  177 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------------------~~~~~~~  177 (223)
                      ..++..+.. .++.+|||+|||+|.++..++      .+|+++|+++                          .++.+..
T Consensus        95 ~~~l~~l~~-~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           95 NMILSMMDI-NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHhcCC-CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            345555543 378899999999999888775      4799999986                          2578889


Q ss_pred             ccCCCC--CCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          178 CDMSNT--PLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       178 ~d~~~l--p~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+...  ++++++||+|++...    ++..++.++.++|+|||.|++
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~~~----~~~~~l~~~~~~LkpgG~lv~  217 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALDML----NPHVTLPVFYPHLKHGGVCAV  217 (336)
T ss_dssp             SCTTCCC-------EEEEEECSS----STTTTHHHHGGGEEEEEEEEE
T ss_pred             CChHHcccccCCCCeeEEEECCC----CHHHHHHHHHHhcCCCcEEEE
Confidence            999876  566778999998543    344589999999999999975

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.24  E-value=8.6e-12  Score=103.07  Aligned_cols=87  Identities=23%  Similarity=0.342  Sum_probs=68.9

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CC-CcEEEccCCCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------ND-PSVIACDMSNTPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~-~~~~~~d~~~lp~~~~  188 (223)
                      .++..+.. .++.+|||+|||+|.++..++      .+|+++|+++               .+ +.+..+|+... +++.
T Consensus        84 ~i~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~  161 (255)
T 3mb5_A           84 LIVAYAGI-SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEE  161 (255)
T ss_dssp             HHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCC
T ss_pred             HHHHhhCC-CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCC
Confidence            44444443 377899999999999888775      4799999996               23 78888898754 6778


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++..    .++..++.++.++|+|||.|++
T Consensus       162 ~~D~v~~~~----~~~~~~l~~~~~~L~~gG~l~~  192 (255)
T 3mb5_A          162 NVDHVILDL----PQPERVVEHAAKALKPGGFFVA  192 (255)
T ss_dssp             SEEEEEECS----SCGGGGHHHHHHHEEEEEEEEE
T ss_pred             CcCEEEECC----CCHHHHHHHHHHHcCCCCEEEE
Confidence            899999732    2667899999999999999985

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.24  E-value=7e-12  Score=104.99  Aligned_cols=88  Identities=23%  Similarity=0.294  Sum_probs=70.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC------------------CCCcEEEccCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS------------------NDPSVIACDMSNTPLN  186 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~------------------~~~~~~~~d~~~lp~~  186 (223)
                      .++..+.. .++.+|||+|||+|.++..++      .+|+++|+++                  .++.+..+|+...+++
T Consensus        90 ~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~  168 (280)
T 1i9g_A           90 QIVHEGDI-FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  168 (280)
T ss_dssp             HHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHHHHcCC-CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence            44444443 377899999999999887765      4799999985                  1467888999888888


Q ss_pred             CCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++||+|++..    .++..++.++.++|+|||.|++
T Consensus       169 ~~~~D~v~~~~----~~~~~~l~~~~~~L~pgG~l~~  201 (280)
T 1i9g_A          169 DGSVDRAVLDM----LAPWEVLDAVSRLLVAGGVLMV  201 (280)
T ss_dssp             TTCEEEEEEES----SCGGGGHHHHHHHEEEEEEEEE
T ss_pred             CCceeEEEECC----cCHHHHHHHHHHhCCCCCEEEE
Confidence            88999999832    2677999999999999999975

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.23  E-value=1.8e-12  Score=119.90  Aligned_cols=83  Identities=13%  Similarity=0.201  Sum_probs=65.0

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCC--CCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l  199 (223)
                      ..+.+|||||||+|.++..|+   ..|+|+|+++               .++.|.+++++++  ++.+++||+|+|..++
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~  144 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF  144 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence            356899999999999999998   6899999997               2467888888877  5678899999999999


Q ss_pred             cCC-CHH--HHHHHHHHccCCCCEEE
Q 027441          200 MGI-NFP--NYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       200 ~~~-d~~--~~l~e~~rvLkpgG~lv  222 (223)
                      ||+ |+.  ..+..+.+.|.++|..+
T Consensus       145 ehv~~~~~~~~~~~~~~tl~~~~~~~  170 (569)
T 4azs_A          145 HHIVHLHGIDEVKRLLSRLADVTQAV  170 (569)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred             hcCCCHHHHHHHHHHHHHhcccccee
Confidence            999 554  22334555566665443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.23  E-value=5.2e-12  Score=102.34  Aligned_cols=91  Identities=12%  Similarity=0.086  Sum_probs=68.2

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-C-CC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P-LN  186 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p-~~  186 (223)
                      .++..+....++.+|||||||+|.++..++      .+|+++|+++                .++.++.+|+... + +.
T Consensus        48 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  127 (223)
T 3duw_A           48 KFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIE  127 (223)
T ss_dssp             HHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence            344444333367899999999999998886      3799999996                2477888887542 1 11


Q ss_pred             ---CCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          187 ---SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ---~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         .++||+|++.....  ..+.++.++.++|+|||+|++
T Consensus       128 ~~~~~~fD~v~~d~~~~--~~~~~l~~~~~~L~pgG~lv~  165 (223)
T 3duw_A          128 NEKYEPFDFIFIDADKQ--NNPAYFEWALKLSRPGTVIIG  165 (223)
T ss_dssp             HTTCCCCSEEEECSCGG--GHHHHHHHHHHTCCTTCEEEE
T ss_pred             hcCCCCcCEEEEcCCcH--HHHHHHHHHHHhcCCCcEEEE
Confidence               26799999876522  567999999999999999875

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.22  E-value=1.9e-11  Score=103.19  Aligned_cols=83  Identities=14%  Similarity=0.220  Sum_probs=64.4

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEec-CC---------C----------------CCcEEEccCCCCC--C---
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDL-VS---------N----------------DPSVIACDMSNTP--L---  185 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDi-s~---------~----------------~~~~~~~d~~~lp--~---  185 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+ ++         .                ++.+...+..+..  +   
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  158 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC  158 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence            66899999999999988776    37999999 65         1                2334433433211  1   


Q ss_pred             -CCCceeEEEEcccccCC-CHHHHHHHHHHccC---C--CCEEEc
Q 027441          186 -NSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLK---P--RGEEQI  223 (223)
Q Consensus       186 -~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLk---p--gG~lvi  223 (223)
                       .+.+||+|+++.+++|. +...++..+.++|+   |  ||.++|
T Consensus       159 ~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          159 TGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             HSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             ccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence             35789999999999988 88899999999999   9  997654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.22  E-value=8.6e-12  Score=103.56  Aligned_cols=91  Identities=13%  Similarity=0.087  Sum_probs=69.0

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-C-C-
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P-L-  185 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p-~-  185 (223)
                      .++..+....+..+|||||||+|..+..++      .+|+++|+++                .++.++.+|+... + + 
T Consensus        69 ~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~  148 (247)
T 1sui_A           69 QFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI  148 (247)
T ss_dssp             HHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHH
Confidence            344444333367899999999999888775      4799999997                2466888887542 3 2 


Q ss_pred             ----CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          186 ----NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 ----~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                          .+++||+|++...  ..+...++.++.++|+|||+|++
T Consensus       149 ~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~  188 (247)
T 1sui_A          149 KDEKNHGSYDFIFVDAD--KDNYLNYHKRLIDLVKVGGVIGY  188 (247)
T ss_dssp             HSGGGTTCBSEEEECSC--STTHHHHHHHHHHHBCTTCCEEE
T ss_pred             hccCCCCCEEEEEEcCc--hHHHHHHHHHHHHhCCCCeEEEE
Confidence                1578999998754  23678999999999999999974

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.22  E-value=1.6e-11  Score=101.50  Aligned_cols=83  Identities=20%  Similarity=0.338  Sum_probs=65.4

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------------------CCCcEEEccCCC-CC--CCCCc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------------------NDPSVIACDMSN-TP--LNSSS  189 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------------------~~~~~~~~d~~~-lp--~~~~s  189 (223)
                      ++.+|||||||+|.++..++     ..|+|+|+++                       .++.++.+|+.. ++  +..++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            56799999999999998887     3699999984                       256788999976 66  77889


Q ss_pred             eeEEEEcccccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|.|+....-.+.         -...++.++.++|+|||.|++
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~  171 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT  171 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence            9999855432221         015899999999999999985

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.21  E-value=2.1e-11  Score=102.85  Aligned_cols=93  Identities=15%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             HHHHHHhccCCCCeEEEECCcc---hHHHH---Hhc--CceEEEecCC---------------CCCcEEEccCCCCC---
Q 027441          131 IIVKWLKDHSPSLVIADFGCGD---ARLAK---SVK--NKVFSFDLVS---------------NDPSVIACDMSNTP---  184 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~---G~~a~---~la--~~v~gvDis~---------------~~~~~~~~d~~~lp---  184 (223)
                      .+..++........|||||||+   |....   .+.  .+|+++|.|+               .++.|+.+|+.+++   
T Consensus        68 rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l  147 (277)
T 3giw_A           68 RAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASIL  147 (277)
T ss_dssp             HHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHH
T ss_pred             HHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhh
Confidence            3445555322447899999997   33332   222  6899999997               14678999998752   


Q ss_pred             ---CCCCcee-----EEEEcccccCC-C---HHHHHHHHHHccCCCCEEEc
Q 027441          185 ---LNSSSVD-----VAVFCLSLMGI-N---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 ---~~~~sfD-----~Vi~~~~l~~~-d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                         .....||     .|++..+|||+ +   +..+|.++.++|+|||+|+|
T Consensus       148 ~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvl  198 (277)
T 3giw_A          148 DAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAM  198 (277)
T ss_dssp             TCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEE
T ss_pred             cccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEE
Confidence               1134455     68899999999 4   56899999999999999985

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.20  E-value=4.4e-12  Score=102.83  Aligned_cols=90  Identities=14%  Similarity=0.150  Sum_probs=67.2

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-C-CC-
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P-LN-  186 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p-~~-  186 (223)
                      ++..+....++.+|||||||+|..+..++      .+|+++|+++                .++.++.+|+... + +. 
T Consensus        55 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  134 (225)
T 3tr6_A           55 LLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIH  134 (225)
T ss_dssp             HHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHT
T ss_pred             HHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhh
Confidence            34444333367899999999999998886      3699999996                2477888887442 2 11 


Q ss_pred             ---CCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          187 ---SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ---~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         .++||+|++...  ..+...++.++.++|+|||+|++
T Consensus       135 ~~~~~~fD~v~~~~~--~~~~~~~l~~~~~~L~pgG~lv~  172 (225)
T 3tr6_A          135 AGQAWQYDLIYIDAD--KANTDLYYEESLKLLREGGLIAV  172 (225)
T ss_dssp             TTCTTCEEEEEECSC--GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCCCCccEEEECCC--HHHHHHHHHHHHHhcCCCcEEEE
Confidence               178999996553  12577899999999999999975

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.20  E-value=4e-11  Score=98.30  Aligned_cols=88  Identities=16%  Similarity=0.257  Sum_probs=68.9

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCcee
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      .++..+.. .++.+|||+|||+|.++..++   .+|+++|+++                .++.+..+|+....+++..||
T Consensus        82 ~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  160 (248)
T 2yvl_A           82 YIALKLNL-NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH  160 (248)
T ss_dssp             HHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred             HHHHhcCC-CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence            34444433 367899999999999888776   6899999996                256778888877554667899


Q ss_pred             EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++...    ++..++.++.++|+|||.|++
T Consensus       161 ~v~~~~~----~~~~~l~~~~~~L~~gG~l~~  188 (248)
T 2yvl_A          161 AAFVDVR----EPWHYLEKVHKSLMEGAPVGF  188 (248)
T ss_dssp             EEEECSS----CGGGGHHHHHHHBCTTCEEEE
T ss_pred             EEEECCc----CHHHHHHHHHHHcCCCCEEEE
Confidence            9997322    667899999999999999975

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.19  E-value=1.9e-11  Score=105.03  Aligned_cols=93  Identities=14%  Similarity=0.152  Sum_probs=69.3

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      .+...+....++.+|||+|||+|..+..++      .+|+|+|+++               .++.++.+|+..++..+++
T Consensus       108 ~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~  187 (315)
T 1ixk_A          108 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE  187 (315)
T ss_dssp             HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccccccc
Confidence            333333344477899999999999888776      4699999997               3677888998887655678


Q ss_pred             eeEEEEcc------cccCC-C----------------HHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCL------SLMGI-N----------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~------~l~~~-d----------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++..      ++++. +                ...+|.++.++|+|||.|++
T Consensus       188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~  244 (315)
T 1ixk_A          188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY  244 (315)
T ss_dssp             EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            99999842      22221 1                14899999999999999974

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.19  E-value=5.7e-11  Score=103.49  Aligned_cols=81  Identities=22%  Similarity=0.300  Sum_probs=67.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ...+|||||||+|.++..++     .+++.+|+..              .++.++.+|+...|++  .+|+|++..+||+
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~  256 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLHD  256 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGGG
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeeccc
Confidence            55799999999999999887     3577788642              5788999999876655  4799999999998


Q ss_pred             C-CH--HHHHHHHHHccCCCCEEEc
Q 027441          202 I-NF--PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~-d~--~~~l~e~~rvLkpgG~lvi  223 (223)
                      + |.  ..+|.++++.|+|||.|+|
T Consensus       257 ~~d~~~~~iL~~~~~al~pgg~lli  281 (353)
T 4a6d_A          257 WADGKCSHLLERIYHTCKPGGGILV  281 (353)
T ss_dssp             SCHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence            8 33  4789999999999999886

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.19  E-value=8.8e-12  Score=103.82  Aligned_cols=81  Identities=20%  Similarity=0.273  Sum_probs=64.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCCC--------------CCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~--------------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                      .++.+|||+|||+|.++..++   .+|+|+|+++.              .+.+..+|+... +++++||+|++....++ 
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~-  196 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL-  196 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH-
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHHH-
Confidence            367899999999999988776   48999999971              166777776552 44678999998765543 


Q ss_pred             CHHHHHHHHHHccCCCCEEEc
Q 027441          203 NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       ...++.++.++|+|||.|++
T Consensus       197 -~~~~l~~~~~~LkpgG~lil  216 (254)
T 2nxc_A          197 -HAALAPRYREALVPGGRALL  216 (254)
T ss_dssp             -HHHHHHHHHHHEEEEEEEEE
T ss_pred             -HHHHHHHHHHHcCCCCEEEE
Confidence             46899999999999999985

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.18  E-value=2.9e-11  Score=101.76  Aligned_cols=81  Identities=17%  Similarity=0.225  Sum_probs=68.4

Q ss_pred             cCCCCeEEEECCcchHHHHHhc---C--ceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441          139 HSPSLVIADFGCGDARLAKSVK---N--KVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a~~la---~--~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      ..++.+|||+|||+|.++..++   .  +|+|+|+++               .++.++.+|+..++. ...||+|++...
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p  195 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYV  195 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCc
Confidence            3467899999999999998887   2  899999996               356788999987754 678999998876


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .   +...++.++.++|+|||+|++
T Consensus       196 ~---~~~~~l~~~~~~LkpgG~l~~  217 (272)
T 3a27_A          196 H---KTHKFLDKTFEFLKDRGVIHY  217 (272)
T ss_dssp             S---SGGGGHHHHHHHEEEEEEEEE
T ss_pred             c---cHHHHHHHHHHHcCCCCEEEE
Confidence            4   667899999999999999975

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.17  E-value=1.4e-11  Score=100.98  Aligned_cols=81  Identities=14%  Similarity=0.136  Sum_probs=64.3

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC----CCCCC--CceeE
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN----TPLNS--SSVDV  192 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~----lp~~~--~sfD~  192 (223)
                      ++.+|||||||+|..+..++      .+|+++|+++                .++.++.+|+..    ++..+  ++||+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            56899999999999988886      2799999997                246777887633    33334  78999


Q ss_pred             EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++....  .++..++.++.++|+|||+|++
T Consensus       152 V~~d~~~--~~~~~~l~~~~~~LkpgG~lv~  180 (232)
T 3cbg_A          152 IFIDADK--RNYPRYYEIGLNLLRRGGLMVI  180 (232)
T ss_dssp             EEECSCG--GGHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEECCCH--HHHHHHHHHHHHHcCCCeEEEE
Confidence            9987552  2678999999999999999985

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.16  E-value=1.2e-11  Score=105.90  Aligned_cols=83  Identities=17%  Similarity=0.113  Sum_probs=64.6

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCCCC--CCCceeEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNTPL--NSSSVDVAV  194 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~lp~--~~~sfD~Vi  194 (223)
                      ++.+|||||||+|.++..++     .+|+++|+++                   .++.++.+|+..++.  .+++||+|+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi  174 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence            56899999999999999886     3799999985                   246778888866543  478999999


Q ss_pred             EcccccCCC-H----HHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMGIN-F----PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~d-~----~~~l~e~~rvLkpgG~lvi  223 (223)
                      +....++.. .    ..++.++.++|+|||+|++
T Consensus       175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~  208 (304)
T 3bwc_A          175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCN  208 (304)
T ss_dssp             EECC---------CCHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            976655432 1    5899999999999999985

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.16  E-value=1.1e-10  Score=99.34  Aligned_cols=83  Identities=12%  Similarity=0.104  Sum_probs=63.2

Q ss_pred             CCCCeEEEECC------cchH-HHHHh-c--CceEEEecCC--CCCcE-EEccCCCCCCCCCceeEEEEcccccC-----
Q 027441          140 SPSLVIADFGC------GDAR-LAKSV-K--NKVFSFDLVS--NDPSV-IACDMSNTPLNSSSVDVAVFCLSLMG-----  201 (223)
Q Consensus       140 ~~~~~ILDiGc------G~G~-~a~~l-a--~~v~gvDis~--~~~~~-~~~d~~~lp~~~~sfD~Vi~~~~l~~-----  201 (223)
                      .++.+||||||      |+|. ++..+ .  .+|+|+|+++  .++.+ +.+|+..+++. ++||+|++....++     
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~  140 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTA-NKWDLIISDMYDPRTKHVT  140 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCS-SCEEEEEECCCCCC---CC
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCcc-CcccEEEEcCCcccccccc
Confidence            46789999999      5565 22222 1  5799999998  46788 99999888764 78999999754332     


Q ss_pred             ------C-CHHHHHHHHHHccCCCCEEEc
Q 027441          202 ------I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ------~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                            . .+..++.++.++|+|||.|++
T Consensus       141 ~d~~~~~~l~~~~l~~a~r~LkpGG~~v~  169 (290)
T 2xyq_A          141 KENDSKEGFFTYLCGFIKQKLALGGSIAV  169 (290)
T ss_dssp             SCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence                  1 135899999999999999985

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.15  E-value=8.9e-11  Score=93.53  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=60.7

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEcccccCCC---
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN---  203 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d---  203 (223)
                      ++.+|||+|||+|.++..++    .+|+|+|+++          .++.++.+|+..+|   ++||+|++...++|..   
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~  127 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHS  127 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-------
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCch
Confidence            56899999999999988886    3699999997          26889999998875   6899999999999883   


Q ss_pred             HHHHHHHHHHccCCCCEE
Q 027441          204 FPNYLQEAQRVLKPRGEE  221 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~l  221 (223)
                      ...++.++.++|  |+++
T Consensus       128 ~~~~l~~~~~~~--g~~~  143 (200)
T 1ne2_A          128 DRAFIDKAFETS--MWIY  143 (200)
T ss_dssp             CHHHHHHHHHHE--EEEE
T ss_pred             hHHHHHHHHHhc--CcEE
Confidence            347899999998  5544

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.14  E-value=4.1e-11  Score=100.59  Aligned_cols=87  Identities=21%  Similarity=0.283  Sum_probs=67.9

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      .++..+.. .++.+|||+|||+|.++..++      .+|+++|+++                .++.+..+|+... ++++
T Consensus       103 ~i~~~~~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~  180 (277)
T 1o54_A          103 FIAMMLDV-KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEK  180 (277)
T ss_dssp             HHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCC
T ss_pred             HHHHHhCC-CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCC
Confidence            44444443 367899999999999887765      4799999986                2466778888765 6667


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++..    -++..++.++.++|+|||.|++
T Consensus       181 ~~D~V~~~~----~~~~~~l~~~~~~L~pgG~l~~  211 (277)
T 1o54_A          181 DVDALFLDV----PDPWNYIDKCWEALKGGGRFAT  211 (277)
T ss_dssp             SEEEEEECC----SCGGGTHHHHHHHEEEEEEEEE
T ss_pred             ccCEEEECC----cCHHHHHHHHHHHcCCCCEEEE
Confidence            899999832    2566999999999999999975

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.14  E-value=2.9e-11  Score=98.23  Aligned_cols=89  Identities=18%  Similarity=0.177  Sum_probs=67.3

Q ss_pred             HHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC--CCCC-
Q 027441          133 VKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT--PLNS-  187 (223)
Q Consensus       133 ~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l--p~~~-  187 (223)
                      +..+....++.+|||||||+|..+..++      .+|+++|+++                .++.++.+|+...  .+.+ 
T Consensus        61 l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~  140 (229)
T 2avd_A           61 LANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA  140 (229)
T ss_dssp             HHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhc
Confidence            3333333467899999999999988886      3799999997                2567788877442  1211 


Q ss_pred             ---CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          188 ---SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ---~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         ++||+|++...  ..+...++.++.++|+|||+|++
T Consensus       141 ~~~~~~D~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~  177 (229)
T 2avd_A          141 GEAGTFDVAVVDAD--KENCSAYYERCLQLLRPGGILAV  177 (229)
T ss_dssp             TCTTCEEEEEECSC--STTHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCccEEEECCC--HHHHHHHHHHHHHHcCCCeEEEE
Confidence               68999998654  23678999999999999999975

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.14  E-value=9.5e-12  Score=102.93  Aligned_cols=82  Identities=10%  Similarity=0.041  Sum_probs=57.9

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCC---CCC---CCceeEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNT---PLN---SSSVDVA  193 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~l---p~~---~~sfD~V  193 (223)
                      ++.+|||+|||+|.++..++     .+|+|+|+++                .++.++.+|+.+.   +++   +.+||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            46799999999999887765     4799999996                2378889997652   454   3689999


Q ss_pred             EEcccccCCC----------------HHHHHHHHHHccCCCCEEE
Q 027441          194 VFCLSLMGIN----------------FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       194 i~~~~l~~~d----------------~~~~l~e~~rvLkpgG~lv  222 (223)
                      ++...+++..                ...++.++.++|+|||.|+
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~  189 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELE  189 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEE
Confidence            9986555332                1245778899999998764

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.13  E-value=1.2e-10  Score=101.37  Aligned_cols=84  Identities=19%  Similarity=0.177  Sum_probs=69.1

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      .++..|||+|||+|.++..++      ..|+|+|+++               .++.+..+|+.+++.+...||+|++...
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP  281 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPP  281 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC
Confidence            367899999999999877665      4799999997               2688999999998877788999999655


Q ss_pred             ccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGI---------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~---------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +...         ....++.++.++|+|||.++|
T Consensus       282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i  315 (354)
T 3tma_A          282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVAL  315 (354)
T ss_dssp             SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred             CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            4322         136899999999999999985

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.12  E-value=1.9e-11  Score=105.93  Aligned_cols=93  Identities=12%  Similarity=0.062  Sum_probs=68.7

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------C--CCcEEEccCCCCCC----C
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------N--DPSVIACDMSNTPL----N  186 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~--~~~~~~~d~~~lp~----~  186 (223)
                      .+.+.+....++.+|||+|||+|.++..++   .+|+++|+|+               .  ++.++.+|+..+..    .
T Consensus       143 ~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~  222 (332)
T 2igt_A          143 WLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR  222 (332)
T ss_dssp             HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc
Confidence            345555423356799999999999998887   4899999997               1  37788888866431    1


Q ss_pred             CCceeEEEEccc----------ccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCLS----------LMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~----------l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+||+|++.-.          +++. +...++.++.++|+|||+|++
T Consensus       223 ~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli  270 (332)
T 2igt_A          223 GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV  270 (332)
T ss_dssp             TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred             CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEE
Confidence            468999998432          1222 567999999999999999764

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.11  E-value=1.9e-10  Score=97.35  Aligned_cols=89  Identities=16%  Similarity=0.147  Sum_probs=66.0

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      .+++.+... ++.+|||+|||+|.++..++    .+|+|+|+|+                .++.++.+|+... ++ ++|
T Consensus       114 ~~l~~~~~~-~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f  190 (284)
T 1nv8_A          114 LALELIRKY-GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKF  190 (284)
T ss_dssp             HHHHHHHHH-TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGT
T ss_pred             HHHHHhccc-CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-ccc
Confidence            344444333 56799999999999988886    4799999997                1378899998762 22 578


Q ss_pred             ---eEEEEcc------------cccCC---------CHHHHHHHHH-HccCCCCEEEc
Q 027441          191 ---DVAVFCL------------SLMGI---------NFPNYLQEAQ-RVLKPRGEEQI  223 (223)
Q Consensus       191 ---D~Vi~~~------------~l~~~---------d~~~~l~e~~-rvLkpgG~lvi  223 (223)
                         |+|++.-            +. |.         +...++.++. +.|+|||.|++
T Consensus       191 ~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~  247 (284)
T 1nv8_A          191 ASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  247 (284)
T ss_dssp             TTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             CCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence               9999962            22 22         1227899999 99999999985

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.11  E-value=1.6e-10  Score=103.87  Aligned_cols=93  Identities=16%  Similarity=0.297  Sum_probs=69.9

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC--CCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP--LNS  187 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp--~~~  187 (223)
                      .+...+....++.+|||+|||+|..+..++      ..|+|+|+++               .++.++.+|+..++  +++
T Consensus       249 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~  328 (450)
T 2yxl_A          249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE  328 (450)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCS
T ss_pred             HHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhcc
Confidence            333333334477899999999999888776      4799999997               36778889998876  556


Q ss_pred             CceeEEEE------cccccCC-CH----------------HHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVF------CLSLMGI-NF----------------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~------~~~l~~~-d~----------------~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++||+|++      ..++++. +.                ..+|.++.++|+|||.|++
T Consensus       329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy  387 (450)
T 2yxl_A          329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLY  387 (450)
T ss_dssp             SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            78999996      2233322 22                4789999999999999974

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.11  E-value=8.2e-11  Score=101.17  Aligned_cols=81  Identities=19%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             CeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCC--CCCCCceeEEEEccccc
Q 027441          143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l~  200 (223)
                      .+|||||||+|.++..++     .+|+++|+++               .++.++.+|+..+  .+++++||+|++....+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            499999999999998886     3789999997               3567888887654  34568999999865443


Q ss_pred             CC-----CHHHHHHHHHHccCCCCEEEc
Q 027441          201 GI-----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~-----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.     ....++.++.++|+|||+|++
T Consensus       171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~  198 (317)
T 3gjy_A          171 AITPQNFTTVEFFEHCHRGLAPGGLYVA  198 (317)
T ss_dssp             SCCCGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred             cccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            22     236899999999999999985

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.10  E-value=6.3e-11  Score=97.26  Aligned_cols=81  Identities=20%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CC-------------
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP-------------  184 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp-------------  184 (223)
                      ++.+|||||||+|..+..++      .+|+++|+++                .++.+..+|+.. ++             
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  139 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS  139 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence            67899999999999888775      4799999997                126777777643 12             


Q ss_pred             -CCC--CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          185 -LNS--SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 -~~~--~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       |++  ++||+|++.....  +.+.++.++.++|+|||+|++
T Consensus       140 ~f~~~~~~fD~I~~~~~~~--~~~~~l~~~~~~L~pgG~lv~  179 (239)
T 2hnk_A          140 DFAFGPSSIDLFFLDADKE--NYPNYYPLILKLLKPGGLLIA  179 (239)
T ss_dssp             TTCCSTTCEEEEEECSCGG--GHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCCCCCcCEEEEeCCHH--HHHHHHHHHHHHcCCCeEEEE
Confidence             233  7899999875432  567899999999999999985

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.09  E-value=3.9e-11  Score=101.72  Aligned_cols=92  Identities=23%  Similarity=0.221  Sum_probs=67.0

Q ss_pred             hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..+.|++.+... ++.+|||||||+|.++..++   .+|+|+|+++                .++.++.+|+..++++  
T Consensus        16 i~~~i~~~~~~~-~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--   92 (285)
T 1zq9_A           16 IINSIIDKAALR-PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--   92 (285)
T ss_dssp             HHHHHHHHTCCC-TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--
T ss_pred             HHHHHHHhcCCC-CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--
Confidence            345566655443 67899999999999999887   6899999996                1467889999888765  


Q ss_pred             ceeEEEEcccccCCCHH--HHH--------------HHH--HHccCCCCEEE
Q 027441          189 SVDVAVFCLSLMGINFP--NYL--------------QEA--QRVLKPRGEEQ  222 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~--~~l--------------~e~--~rvLkpgG~lv  222 (223)
                      +||+|++...+++..+.  .++              .|+  .++|+|||.++
T Consensus        93 ~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           93 FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            79999997665543111  222              233  37999999754

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.08  E-value=5.8e-11  Score=97.79  Aligned_cols=90  Identities=13%  Similarity=0.126  Sum_probs=67.9

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-C-C--
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P-L--  185 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p-~--  185 (223)
                      ++..+....+..+|||||||+|..+..++      .+|+++|+++                .++.++.+|+... + +  
T Consensus        61 ~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~  140 (237)
T 3c3y_A           61 LMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQ  140 (237)
T ss_dssp             HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence            44444333467899999999999888775      4799999996                2467788887542 2 2  


Q ss_pred             ---CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          186 ---NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 ---~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         ++++||+|++....  -+...++..+.++|+|||+|++
T Consensus       141 ~~~~~~~fD~I~~d~~~--~~~~~~l~~~~~~L~pGG~lv~  179 (237)
T 3c3y_A          141 GQESEGSYDFGFVDADK--PNYIKYHERLMKLVKVGGIVAY  179 (237)
T ss_dssp             STTCTTCEEEEEECSCG--GGHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCCCCCcCEEEECCch--HHHHHHHHHHHHhcCCCeEEEE
Confidence               25789999976432  2678999999999999999975

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.08  E-value=7.3e-11  Score=99.27  Aligned_cols=85  Identities=14%  Similarity=0.149  Sum_probs=66.2

Q ss_pred             cCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCC----CCCceeEE
Q 027441          139 HSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPL----NSSSVDVA  193 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~----~~~sfD~V  193 (223)
                      ..++.+|||+|||+|..+..++      .+|+|+|+++               .++.++.+|+..++.    ..+.||+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            3477899999999999887776      4799999997               357788888877654    25789999


Q ss_pred             EEcccccC-------------------CCHHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMG-------------------INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~-------------------~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++.....+                   -....++.++.++|+|||.|++
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~  209 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVY  209 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            98622211                   1346899999999999999974

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.07  E-value=8e-11  Score=102.07  Aligned_cols=83  Identities=16%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC--CCCCCceeEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT--PLNSSSVDVAV  194 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l--p~~~~sfD~Vi  194 (223)
                      ...+|||||||+|.++..++     .+|+++|+++                   .++.++.+|+..+  .+++++||+|+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi  199 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  199 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence            56899999999999999887     3799999986                   2467788887553  23467899999


Q ss_pred             EcccccC--CC---HHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMG--IN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~--~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.....+  .+   ...++.++.++|+|||+|++
T Consensus       200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~  233 (334)
T 1xj5_A          200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT  233 (334)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            8654221  11   46899999999999999985

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.06  E-value=3e-10  Score=93.85  Aligned_cols=91  Identities=15%  Similarity=0.156  Sum_probs=70.9

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc--CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK--NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVA  193 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la--~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~V  193 (223)
                      +.+...+-...+..+|||||||.|.++..+.  ..++|+||++              .+..+.++|....|++. +||+|
T Consensus        94 d~fY~~i~~~~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~Dvv  172 (253)
T 3frh_A           94 DTLYDFIFSAETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLA  172 (253)
T ss_dssp             HHHHHHHTSSCCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEE
T ss_pred             HHHHHHHhcCCCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchH
Confidence            3444444333467899999999999999876  5899999997              34567888998888654 89999


Q ss_pred             EEcccccCC---CHHHHHHHHHHccCCCCEEE
Q 027441          194 VFCLSLMGI---NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       194 i~~~~l~~~---d~~~~l~e~~rvLkpgG~lv  222 (223)
                      ++.-++||+   .....+ .+...|+++|+++
T Consensus       173 Lllk~lh~LE~q~~~~~~-~ll~aL~~~~vvV  203 (253)
T 3frh_A          173 LIFKLLPLLEREQAGSAM-ALLQSLNTPRMAV  203 (253)
T ss_dssp             EEESCHHHHHHHSTTHHH-HHHHHCBCSEEEE
T ss_pred             HHHHHHHHhhhhchhhHH-HHHHHhcCCCEEE
Confidence            999999988   233444 8888999999886

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.06  E-value=1.2e-10  Score=98.26  Aligned_cols=83  Identities=14%  Similarity=0.037  Sum_probs=64.8

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCC-CCCCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  195 (223)
                      ...+|||||||+|.++..++     .+|+++|+++                   .++.++.+|+.. ++..+++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            56899999999999999886     4799999986                   245677888754 3334678999999


Q ss_pred             cccccCCC-----HHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGIN-----FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~d-----~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ....++..     ...++.++.++|+|||+|++
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~  187 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA  187 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            65543221     25899999999999999985

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.06  E-value=7.1e-11  Score=101.43  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------------CCCcEEEccCCC-CCCCCCceeEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------------NDPSVIACDMSN-TPLNSSSVDVAV  194 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------------~~~~~~~~d~~~-lp~~~~sfD~Vi  194 (223)
                      ...+|||||||+|.++..++     .+|+++|+++                    .++.++.+|+.. ++..+++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            56899999999999999887     3699999986                    135677788755 343467899999


Q ss_pred             EcccccC---CC-----HHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMG---IN-----FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~---~d-----~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +....++   ..     ...++.++.++|+|||+|++
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~  193 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM  193 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEE
Confidence            9876654   21     36899999999999999985

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.05  E-value=1.6e-10  Score=95.09  Aligned_cols=83  Identities=12%  Similarity=0.058  Sum_probs=65.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      +++.+|||||||+|.++..++     .+|+|+|+++                .++.+..+|......+++.||+|+.+++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            367899999999999999887     3699999997                3578889998776655557999886554


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .- --...++.+..+.|+++|.|++
T Consensus       100 Gg-~lI~~IL~~~~~~l~~~~~lIl  123 (230)
T 3lec_A          100 GG-RLIADILNNDIDKLQHVKTLVL  123 (230)
T ss_dssp             CH-HHHHHHHHHTGGGGTTCCEEEE
T ss_pred             ch-HHHHHHHHHHHHHhCcCCEEEE
Confidence            21 1235788888999999999885

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.05  E-value=8.1e-11  Score=97.65  Aligned_cols=83  Identities=16%  Similarity=0.037  Sum_probs=64.4

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      +++.+|||||||+|.++..++     .+|+|+|+++                ..+.+..+|......++..||+|+.+++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            367899999999999999887     3699999997                2478888998766544446999987544


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .- --...+|.+..+.|+++|+|++
T Consensus       100 Gg-~lI~~IL~~~~~~L~~~~~lIl  123 (244)
T 3gnl_A          100 GG-TLIRTILEEGAAKLAGVTKLIL  123 (244)
T ss_dssp             CH-HHHHHHHHHTGGGGTTCCEEEE
T ss_pred             ch-HHHHHHHHHHHHHhCCCCEEEE
Confidence            21 0235788899999999999985

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.04  E-value=1.9e-10  Score=94.32  Aligned_cols=82  Identities=15%  Similarity=0.061  Sum_probs=63.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCC-CCCCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMS-NTPLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~-~lp~~~~sfD~Vi~~~  197 (223)
                      +++.+|||||||+|.++..++     .+|+|+|+++                .++.+..+|.. .++. ...||+|+.++
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG   92 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAG   92 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcC
Confidence            367899999999999999887     3799999997                24778888874 4442 23699998765


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.-. -...++.++...|+|+|+|++
T Consensus        93 ~Gg~-~i~~Il~~~~~~L~~~~~lVl  117 (225)
T 3kr9_A           93 MGGR-LIARILEEGLGKLANVERLIL  117 (225)
T ss_dssp             ECHH-HHHHHHHHTGGGCTTCCEEEE
T ss_pred             CChH-HHHHHHHHHHHHhCCCCEEEE
Confidence            4211 246889999999999999985

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.04  E-value=1.4e-10  Score=98.84  Aligned_cols=83  Identities=13%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCC-CCCCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  195 (223)
                      ...+|||||||+|.++..++     .+|+++|+++                   .++.++.+|+.. ++..+++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            45899999999999999887     3799999986                   245677787654 3444678999998


Q ss_pred             cccccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...-+++      ....++.++.++|+|||+|++
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~  203 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA  203 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            5432212      236899999999999999985

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.03  E-value=6.2e-11  Score=98.00  Aligned_cols=95  Identities=19%  Similarity=0.171  Sum_probs=68.3

Q ss_pred             chHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCC-Cc
Q 027441          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNS-SS  189 (223)
Q Consensus       127 ~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~-~s  189 (223)
                      ...+.+++.+... ++.+|||||||+|.++..++   .+|+|+|+++             .++.++.+|+..+++++ ++
T Consensus        16 ~~~~~i~~~~~~~-~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~   94 (245)
T 1yub_A           16 KVLNQIIKQLNLK-ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             TTHHHHHHHCCCC-SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHHHhcCCC-CCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence            3445666665443 67899999999999988887   5899999997             13567789999988774 68


Q ss_pred             eeEEEEccccc-----------CC-CHHHHH----HHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLM-----------GI-NFPNYL----QEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~-----------~~-d~~~~l----~e~~rvLkpgG~lvi  223 (223)
                      | .|++....+           |. +...++    +.+.|+|+|||.|+|
T Consensus        95 f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           95 Y-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             E-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             c-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence            8 666653222           12 333444    779999999998653

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.03  E-value=8.3e-10  Score=98.58  Aligned_cols=85  Identities=13%  Similarity=0.073  Sum_probs=66.5

Q ss_pred             cCCCCeEEEECCcchHHHHHhc-----CceEEEecCCC--------------CCcEEEccCCCCC--CCCCceeEEEEc-
Q 027441          139 HSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN--------------DPSVIACDMSNTP--LNSSSVDVAVFC-  196 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~--------------~~~~~~~d~~~lp--~~~~sfD~Vi~~-  196 (223)
                      ..++.+|||+|||+|..+..++     ..|+|+|+++.              ++.++.+|+..++  ++++.||+|++. 
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence            3478899999999999888876     48999999982              4677888988876  566789999962 


Q ss_pred             -----ccccCC-CH----------------HHHHHHHHHccCCCCEEEc
Q 027441          197 -----LSLMGI-NF----------------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 -----~~l~~~-d~----------------~~~l~e~~rvLkpgG~lvi  223 (223)
                           .++++. +.                ..++.++.++|+|||.|++
T Consensus       324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvy  372 (429)
T 1sqg_A          324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVY  372 (429)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                 223322 21                3789999999999999974

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.02  E-value=3.7e-10  Score=94.64  Aligned_cols=76  Identities=11%  Similarity=-0.087  Sum_probs=61.9

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC-------------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------------NDPSVIACDMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      ...+|||||||+|.++..++   .+|+++|+++                   .++.++.+|+..+.   ++||+|++.. 
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~-  147 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ-  147 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence            45799999999999998777   5799999986                   13556677776654   7899999873 


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         .++..++..+.++|+|||+|++
T Consensus       148 ---~dp~~~~~~~~~~L~pgG~lv~  169 (262)
T 2cmg_A          148 ---EPDIHRIDGLKRMLKEDGVFIS  169 (262)
T ss_dssp             ---CCCHHHHHHHHTTEEEEEEEEE
T ss_pred             ---CChHHHHHHHHHhcCCCcEEEE
Confidence               3666799999999999999975

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.01  E-value=1.4e-10  Score=99.29  Aligned_cols=83  Identities=18%  Similarity=0.084  Sum_probs=62.9

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCC-CCCCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  195 (223)
                      ...+|||||||+|.++..++     .+|+++|+++                   .++.++.+|+.. ++..+++||+|++
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            56899999999999999887     4799999986                   245677788754 3445688999998


Q ss_pred             cccccCC-----CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI-----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~-----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ....++.     ....++.++.++|+|||+|++
T Consensus       175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~  207 (304)
T 2o07_A          175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCC  207 (304)
T ss_dssp             ECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEE
Confidence            6554322     224789999999999999985

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.00  E-value=1.7e-10  Score=97.70  Aligned_cols=83  Identities=17%  Similarity=0.134  Sum_probs=63.9

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC-CCCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT-PLNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l-p~~~~sfD~Vi~  195 (223)
                      ...+|||||||+|.++..++     .+|+++|+++                   .++.++.+|+... +..+++||+|++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            56899999999999999886     4799999986                   2356777777542 223678999998


Q ss_pred             cccccCCC---H--HHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGIN---F--PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~d---~--~~~l~e~~rvLkpgG~lvi  223 (223)
                      ....++..   .  ..++..+.++|+|||+|++
T Consensus       158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~  190 (283)
T 2i7c_A          158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA  190 (283)
T ss_dssp             ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            65433221   1  6999999999999999985

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.98  E-value=6.1e-10  Score=97.69  Aligned_cols=79  Identities=13%  Similarity=0.094  Sum_probs=65.4

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCC-CCC-CCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TPL-NSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~-lp~-~~~sfD~Vi~~~~  198 (223)
                      ++.+|||+| |+|.++..++     .+|+|+|+++               .++.++.+|+.. +|. .+++||+|++...
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            568999999 9999988776     3799999996               268899999988 664 3578999999876


Q ss_pred             ccCCCHHHHHHHHHHccCCCCE
Q 027441          199 LMGINFPNYLQEAQRVLKPRGE  220 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~  220 (223)
                      +++.....++.++.++|+|||.
T Consensus       251 ~~~~~~~~~l~~~~~~LkpgG~  272 (373)
T 2qm3_A          251 ETLEAIRAFVGRGIATLKGPRC  272 (373)
T ss_dssp             SSHHHHHHHHHHHHHTBCSTTC
T ss_pred             CchHHHHHHHHHHHHHcccCCe
Confidence            5543457899999999999993

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.98  E-value=1.8e-10  Score=98.97  Aligned_cols=83  Identities=18%  Similarity=0.118  Sum_probs=60.4

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCC-CCCCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  195 (223)
                      ...+|||||||+|.++..++     .+|+++|+++                   .++.++.+|+.. ++..+++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            56899999999999999886     4799999986                   134566777654 2334678999998


Q ss_pred             cccccCC-C---H-HHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI-N---F-PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~-d---~-~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...-+.. +   . ..++.++.++|+|||+|++
T Consensus       188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~  220 (314)
T 2b2c_A          188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSS  220 (314)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEE
T ss_pred             cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEE
Confidence            6542211 1   1 6899999999999999985

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.98  E-value=2.2e-10  Score=98.69  Aligned_cols=83  Identities=17%  Similarity=0.123  Sum_probs=63.2

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCC-CCCCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  195 (223)
                      ...+|||||||+|.++..++     .+|+++|+++                   .++.++.+|+.. ++..+++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            56899999999999999887     3699999986                   135677777654 2333578999998


Q ss_pred             cccccCC---C--HHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI---N--FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~---d--~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...-.+.   .  ...++.++.++|+|||+|++
T Consensus       196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~  228 (321)
T 2pt6_A          196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA  228 (321)
T ss_dssp             ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            6532211   1  16899999999999999975

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.98  E-value=8.1e-10  Score=100.12  Aligned_cols=83  Identities=8%  Similarity=0.088  Sum_probs=64.5

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCC-CCCceeEEEEc--
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFC--  196 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~--  196 (223)
                      ++.+|||+|||+|..+..++      ..|+|+|+++               .++.++.+|+..++. .+++||+|++.  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            67899999999999888776      4799999997               357788889888764 45789999972  


Q ss_pred             ----ccccCC-C----------------HHHHHHHHHHccCCCCEEEc
Q 027441          197 ----LSLMGI-N----------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ----~~l~~~-d----------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                          .++.+. +                ...+|.++.++|||||+|++
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvy  244 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY  244 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                122211 1                13789999999999999974

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.97  E-value=1.7e-09  Score=86.30  Aligned_cols=77  Identities=19%  Similarity=0.205  Sum_probs=62.6

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                      ++.+|||+|||+|.++..++    .+|+|+|+++              .++.++.+|+..+|   .+||+|++...+++.
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCccc
Confidence            57899999999999998886    3699999996              15788899998875   489999999888765


Q ss_pred             ---CHHHHHHHHHHccCCCCEEE
Q 027441          203 ---NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       203 ---d~~~~l~e~~rvLkpgG~lv  222 (223)
                         ....++.++.++|  ||.++
T Consensus       126 ~~~~~~~~l~~~~~~l--~~~~~  146 (207)
T 1wy7_A          126 RKHADRPFLLKAFEIS--DVVYS  146 (207)
T ss_dssp             STTTTHHHHHHHHHHC--SEEEE
T ss_pred             cCCchHHHHHHHHHhc--CcEEE
Confidence               3357889999998  55543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.95  E-value=8.8e-10  Score=96.73  Aligned_cols=90  Identities=16%  Similarity=0.202  Sum_probs=68.6

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---C--ceEEEecCC----------------CCCcEEEccCCCCCCCC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---N--KVFSFDLVS----------------NDPSVIACDMSNTPLNS  187 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~--~v~gvDis~----------------~~~~~~~~d~~~lp~~~  187 (223)
                      ...++...  ..++.+|||+|||+|.++..++   .  +|+|+|+++                .++.+..+|+..+++++
T Consensus       207 a~~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~  284 (373)
T 3tm4_A          207 ANAMIELA--ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV  284 (373)
T ss_dssp             HHHHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred             HHHHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence            34444444  3477899999999999988886   3  899999997                26789999999999888


Q ss_pred             CceeEEEEcccccCC-----C----HHHHHHHHHHccCCCCEE
Q 027441          188 SSVDVAVFCLSLMGI-----N----FPNYLQEAQRVLKPRGEE  221 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~-----d----~~~~l~e~~rvLkpgG~l  221 (223)
                      ++||+|++...+...     .    ...++.++.++| +|+.+
T Consensus       285 ~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~  326 (373)
T 3tm4_A          285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGV  326 (373)
T ss_dssp             SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEE
T ss_pred             CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEE
Confidence            999999997654421     1    357889999999 44433

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.95  E-value=1.7e-09  Score=100.68  Aligned_cols=116  Identities=18%  Similarity=0.271  Sum_probs=86.3

Q ss_pred             CchHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhc---cCCCCeEEEECCcchHHHHHhc----C-----c
Q 027441           95 TGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKD---HSPSLVIADFGCGDARLAKSVK----N-----K  162 (223)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~---~~~~~~ILDiGcG~G~~a~~la----~-----~  162 (223)
                      -+...++.|.+++-.|+.|........           .+.+..   .....+|||||||+|.++....    .     +
T Consensus       319 L~s~tYevFEkD~vKy~~Ye~AI~~Al-----------~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vk  387 (637)
T 4gqb_A          319 LESQTYEVFEKDPIKYSQYQQAIYKCL-----------LDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIK  387 (637)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEE
T ss_pred             hhhhhhhhhcCChhhHHHHHHHHHHHH-----------HHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcE
Confidence            356677999999999998876554333           222211   1234689999999999844332    1     6


Q ss_pred             eEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC---CHHHHHHHHHHccCCCCEEE
Q 027441          163 VFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       163 v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lv  222 (223)
                      |+||+-++               ..+.++.+|++++.++ +.+|+||+-+.-..+   ..+.+|....|.|||||+++
T Consensus       388 VyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          388 LYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            89999987               4688999999998776 679999987765544   45588999999999999975

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.94  E-value=1.2e-09  Score=93.16  Aligned_cols=89  Identities=24%  Similarity=0.301  Sum_probs=63.2

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCce
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      .+.+++.+... ++.+|||||||+|.++..++   .+|+|+|+++               .++.++.+|+..++++  +|
T Consensus        31 ~~~i~~~~~~~-~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~  107 (299)
T 2h1r_A           31 LDKIIYAAKIK-SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KF  107 (299)
T ss_dssp             HHHHHHHHCCC-TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CC
T ss_pred             HHHHHHhcCCC-CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cC
Confidence            45566655443 67899999999999999998   4799999996               3577888999888764  79


Q ss_pred             eEEEEcccccCCCH--HHHH---------------HHHHHccCCCCE
Q 027441          191 DVAVFCLSLMGINF--PNYL---------------QEAQRVLKPRGE  220 (223)
Q Consensus       191 D~Vi~~~~l~~~d~--~~~l---------------~e~~rvLkpgG~  220 (223)
                      |+|++....++..+  ..++               +.+.|+++|+|.
T Consensus       108 D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~  154 (299)
T 2h1r_A          108 DVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD  154 (299)
T ss_dssp             SEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred             CEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence            99999876665422  2333               447788988773

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.93  E-value=2.1e-09  Score=94.99  Aligned_cols=97  Identities=14%  Similarity=0.195  Sum_probs=70.1

Q ss_pred             CCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCCC------CCcEEEccCCCCCCCCCceeE
Q 027441          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVSN------DPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       125 p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~------~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      |....+.+.+.+... ++.+|||+|||+|.++..++      .+|+|+|+++.      ++.++.+|+...+. ...||+
T Consensus        24 P~~l~~~~~~~~~~~-~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~-~~~fD~  101 (421)
T 2ih2_A           24 PPEVVDFMVSLAEAP-RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP-GEAFDL  101 (421)
T ss_dssp             CHHHHHHHHHHCCCC-TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCC-SSCEEE
T ss_pred             CHHHHHHHHHhhccC-CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCc-cCCCCE
Confidence            444455666665432 46799999999999888776      37999999983      45677888877653 468999


Q ss_pred             EEEccccc----------CCC--------------------HHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLM----------GIN--------------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~----------~~d--------------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++.--+.          |++                    ...++..+.++|+|||.+++
T Consensus       102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~  162 (421)
T 2ih2_A          102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  162 (421)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence            99952221          121                    12678999999999999875

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.93  E-value=4.5e-10  Score=99.05  Aligned_cols=84  Identities=10%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------C--CCcEEEccCCCC-CC---CCCceeEEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N--DPSVIACDMSNT-PL---NSSSVDVAV  194 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~--~~~~~~~d~~~l-p~---~~~sfD~Vi  194 (223)
                      .++.+|||+|||+|.++..++    .+|+|+|+|+               .  ++.++.+|+... +.   ...+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            367899999999999998887    3799999998               2  677889998652 21   245899999


Q ss_pred             Ecccc-----cCC-----CHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSL-----MGI-----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l-----~~~-----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.-..     .++     +...++..+.++|+|||+|++
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~  329 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIA  329 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            85332     122     345678888999999999975

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.93  E-value=4.2e-10  Score=106.37  Aligned_cols=88  Identities=10%  Similarity=0.072  Sum_probs=68.3

Q ss_pred             HhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------C--CCcEEEccCCC-CCCCCCceeEE
Q 027441          136 LKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N--DPSVIACDMSN-TPLNSSSVDVA  193 (223)
Q Consensus       136 l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~--~~~~~~~d~~~-lp~~~~sfD~V  193 (223)
                      +....++.+|||+|||+|.++..++    .+|+++|+|+               .  ++.++.+|+.. ++...++||+|
T Consensus       534 l~~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~I  613 (703)
T 3v97_A          534 LGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLI  613 (703)
T ss_dssp             HHHHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             HHHhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEE
Confidence            3333467899999999999998876    4699999996               1  47788899866 34446789999


Q ss_pred             EEccc-----------ccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLS-----------LMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~-----------l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++.--           +.+. +...++..+.++|+|||+|++
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~  655 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMF  655 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            98542           2222 566899999999999999985

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.92  E-value=2.2e-09  Score=89.99  Aligned_cols=84  Identities=14%  Similarity=0.091  Sum_probs=62.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------C------CCcEEEccCCCCCCCCCceeEEEEccccc-
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------N------DPSVIACDMSNTPLNSSSVDVAVFCLSLM-  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------~------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~-  200 (223)
                      .++.+|||||||+|.|+.+++     ..|.|+|+.-       .      ++.++..++....+++..||+|+|..+.+ 
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apns  152 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESS  152 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccCc
Confidence            467899999999999999876     2466777762       1      23345556655677788999999999877 


Q ss_pred             ---CCCHH---HHHHHHHHccCCC-CEEEc
Q 027441          201 ---GINFP---NYLQEAQRVLKPR-GEEQI  223 (223)
Q Consensus       201 ---~~d~~---~~l~e~~rvLkpg-G~lvi  223 (223)
                         ++|-.   .+|..+.++|+|| |.|++
T Consensus       153 G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~  182 (277)
T 3evf_A          153 SSSVTEGERTVRVLDTVEKWLACGVDNFCV  182 (277)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence               22322   3568889999999 99985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.91  E-value=7.1e-10  Score=93.66  Aligned_cols=82  Identities=12%  Similarity=0.031  Sum_probs=61.9

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC-------------------------CCCcEEEccCCCC-CCCCCce
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------------------NDPSVIACDMSNT-PLNSSSV  190 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------------------~~~~~~~~d~~~l-p~~~~sf  190 (223)
                      .+.+|||||||+|.++..++    .+|+++|+++                         .++.++.+|+... +. +++|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f  153 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF  153 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence            56899999999999999887    4799999985                         1245666665432 22 5789


Q ss_pred             eEEEEcccccCC-----CHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGI-----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~-----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++....++.     ....++.++.++|+|||+|++
T Consensus       154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~  191 (281)
T 1mjf_A          154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT  191 (281)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            999987654321     136889999999999999975

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.91  E-value=5.5e-10  Score=100.71  Aligned_cols=90  Identities=11%  Similarity=0.067  Sum_probs=65.8

Q ss_pred             HHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC--------------CCCcEEEccCCCCC-CCCCcee
Q 027441          133 VKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTP-LNSSSVD  191 (223)
Q Consensus       133 ~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------~~~~~~~~d~~~lp-~~~~sfD  191 (223)
                      ...+. ..++.+|||+|||+|..+..++      ..|+|+|+++              ..+.++.+|+..++ +.+++||
T Consensus        94 a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD  172 (464)
T 3m6w_A           94 GVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFH  172 (464)
T ss_dssp             HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEE
T ss_pred             HHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCC
Confidence            33443 3478999999999999888876      4799999997              12667778876665 2467899


Q ss_pred             EEEE----c--ccccCC-CH----------------HHHHHHHHHccCCCCEEEc
Q 027441          192 VAVF----C--LSLMGI-NF----------------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~----~--~~l~~~-d~----------------~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++    +  .++.+. +.                ..+|.++.++|+|||+|++
T Consensus       173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvy  227 (464)
T 3m6w_A          173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVY  227 (464)
T ss_dssp             EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            9995    2  122211 11                5799999999999999973

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.90  E-value=2.6e-10  Score=100.38  Aligned_cols=89  Identities=12%  Similarity=0.104  Sum_probs=67.4

Q ss_pred             HHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCC----CCCcee
Q 027441          134 KWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL----NSSSVD  191 (223)
Q Consensus       134 ~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~----~~~sfD  191 (223)
                      ..+... ++.+|||+|||+|.++..++   .+|+|+|+++               .++.++.+|+..+..    ...+||
T Consensus       203 ~~~~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD  281 (382)
T 1wxx_A          203 LYMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFD  281 (382)
T ss_dssp             HHGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             HHHHhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCee
Confidence            344444 67899999999999998887   5899999997               247788888866421    257899


Q ss_pred             EEEEcccccC---------C-CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMG---------I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~---------~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++.-....         . +...++.++.++|+|||+|++
T Consensus       282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  323 (382)
T 1wxx_A          282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT  323 (382)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            9998543211         1 345899999999999999875

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.89  E-value=1.9e-09  Score=90.04  Aligned_cols=81  Identities=14%  Similarity=0.126  Sum_probs=65.9

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++..+|||||||+|.++..+.     ..|+++|+++              ....+.+.|...-+ +...||+|++.-+++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~  209 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLP  209 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHH
Confidence            356899999999999999886     4899999997              33456677776655 357799999999999


Q ss_pred             CCCHH---HHHHHHHHccCCCCEEE
Q 027441          201 GINFP---NYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       201 ~~d~~---~~l~e~~rvLkpgG~lv  222 (223)
                      |++..   ..+ .+...|+|+|+++
T Consensus       210 ~Le~q~kg~g~-~ll~aL~~~~vvV  233 (281)
T 3lcv_B          210 CLETQQRGSGW-EVIDIVNSPNIVV  233 (281)
T ss_dssp             HHHHHSTTHHH-HHHHHSSCSEEEE
T ss_pred             HhhhhhhHHHH-HHHHHhCCCCEEE
Confidence            99443   455 8999999999987

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.89  E-value=2.9e-09  Score=92.18  Aligned_cols=82  Identities=22%  Similarity=0.230  Sum_probs=64.0

Q ss_pred             CCCeEEEECCcchHHHHHhc----------CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          141 PSLVIADFGCGDARLAKSVK----------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----------~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      ++.+|||+|||+|.++..++          ..|+|+|+++              .++.+..+|.... .....||+|++.
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~N  208 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD  208 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEEC
Confidence            56899999999999877664          3689999997              2467888887653 345789999999


Q ss_pred             ccccCC-C-----------------H-HHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGI-N-----------------F-PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~-d-----------------~-~~~l~e~~rvLkpgG~lvi  223 (223)
                      -.+.++ .                 . ..++..+.+.|+|||.+++
T Consensus       209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~  254 (344)
T 2f8l_A          209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  254 (344)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEE
Confidence            776543 1                 1 2589999999999999875

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.88  E-value=2.7e-09  Score=90.13  Aligned_cols=79  Identities=15%  Similarity=0.194  Sum_probs=63.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||+|||+|.++..++    .+|+++|+++                ..+.++.+|+..++. .+.||.|++....
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p~  202 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV  202 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCCC
Confidence            478999999999999988776    4799999997                346788899988764 5789999876432


Q ss_pred             cCCCHHHHHHHHHHccCCCCEEE
Q 027441          200 MGINFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       200 ~~~d~~~~l~e~~rvLkpgG~lv  222 (223)
                         ....++..+.++|+|||+|.
T Consensus       203 ---~~~~~l~~a~~~lk~gG~ih  222 (278)
T 3k6r_A          203 ---RTHEFIPKALSIAKDGAIIH  222 (278)
T ss_dssp             ---SGGGGHHHHHHHEEEEEEEE
T ss_pred             ---cHHHHHHHHHHHcCCCCEEE
Confidence               22467888889999999985

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.87  E-value=1.5e-10  Score=95.82  Aligned_cols=80  Identities=16%  Similarity=0.139  Sum_probs=57.7

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCC-CceeEEEEccccc---
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNS-SSVDVAVFCLSLM---  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~-~sfD~Vi~~~~l~---  200 (223)
                      ++.+|||||||+|.++..++   .+|+|+|+++             .++.++.+|+..+++++ ..| .|++...++   
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~nlPy~~~~  108 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGNIPYNIST  108 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEECCGGGHH
T ss_pred             CCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEeCCcccCH
Confidence            67899999999999999887   5899999996             36788999999988874 456 344443222   


Q ss_pred             --------CC-CHHHHH----HHHHHccCCCCEE
Q 027441          201 --------GI-NFPNYL----QEAQRVLKPRGEE  221 (223)
Q Consensus       201 --------~~-d~~~~l----~e~~rvLkpgG~l  221 (223)
                              |. ....++    +.+.|+|+|+|.|
T Consensus       109 ~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l  142 (244)
T 1qam_A          109 DIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL  142 (244)
T ss_dssp             HHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred             HHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence                    21 111233    4488899998865

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.87  E-value=1.1e-09  Score=98.61  Aligned_cols=84  Identities=13%  Similarity=0.115  Sum_probs=63.1

Q ss_pred             cCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC-CCCCceeEEEEc
Q 027441          139 HSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAVFC  196 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~  196 (223)
                      ..++.+|||+|||+|..+..++      ..|+++|+++               .++.++.+|+..++ ..+++||+|++.
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            3478999999999999887776      4799999997               35667777876654 235789999973


Q ss_pred             cc------ccCCCH------------------HHHHHHHHHccCCCCEEEc
Q 027441          197 LS------LMGINF------------------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~------l~~~d~------------------~~~l~e~~rvLkpgG~lvi  223 (223)
                      .-      +.+ ++                  ..+|.++.++|+|||.|+.
T Consensus       183 aPCSg~G~~rr-~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY  232 (456)
T 3m4x_A          183 APCSGEGMFRK-DPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIY  232 (456)
T ss_dssp             CCCCCGGGTTT-CHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCCCcccccc-CHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            21      111 11                  1789999999999999973

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.86  E-value=3.4e-09  Score=91.75  Aligned_cols=77  Identities=14%  Similarity=0.219  Sum_probs=63.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      .++.+|||+|||+|.++.. +   .+|+|+|+++                .++.++.+|+..+.   .+||+|++.....
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~~  269 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPKF  269 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTTT
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcHh
Confidence            3678999999999999988 7   5799999996                35788899998776   7899999863321


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         ...++..+.++|+|||+|++
T Consensus       270 ---~~~~l~~~~~~L~~gG~l~~  289 (336)
T 2yx1_A          270 ---AHKFIDKALDIVEEGGVIHY  289 (336)
T ss_dssp             ---GGGGHHHHHHHEEEEEEEEE
T ss_pred             ---HHHHHHHHHHHcCCCCEEEE
Confidence               23789999999999998874

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.86  E-value=1.1e-09  Score=96.78  Aligned_cols=84  Identities=14%  Similarity=0.027  Sum_probs=65.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------C---CCcEEEccCCCCCC----CCCceeEEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------N---DPSVIACDMSNTPL----NSSSVDVAV  194 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~---~~~~~~~d~~~lp~----~~~sfD~Vi  194 (223)
                      .++.+|||+|||+|.++..++    .+|+|+|+++              .   ++.++.+|+..+..    ....||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            367899999999999998886    4799999996              1   45688888865421    146899999


Q ss_pred             Ecccc---------cCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSL---------MGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l---------~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.-..         .+. +...++.++.++|+|||+|++
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  337 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLT  337 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            86422         222 566899999999999999975

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.85  E-value=2.6e-09  Score=99.75  Aligned_cols=116  Identities=19%  Similarity=0.208  Sum_probs=84.7

Q ss_pred             chHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHh------cC--------
Q 027441           96 GKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSV------KN--------  161 (223)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~l------a~--------  161 (223)
                      +...++.|..+.-.|+.|........           .+..........|||||||+|.++...      +.        
T Consensus       375 es~tYe~fekD~vRy~~Y~~AI~~al-----------~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~  443 (745)
T 3ua3_A          375 DSGVYNTFEQDQIKYDVYGEAVVGAL-----------KDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQE  443 (745)
T ss_dssp             CHHHHHHHHHCHHHHHHHHHHHHHHH-----------HHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSC
T ss_pred             chHHHHHHcCChhhHHHHHHHHHHHH-----------HHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCcccccccc
Confidence            55567888888888888775443322           111111113468999999999985321      13        


Q ss_pred             ----ceEEEecCC---------------CCCcEEEccCCCCCCC-----CCceeEEEEcccccCC---CHHHHHHHHHHc
Q 027441          162 ----KVFSFDLVS---------------NDPSVIACDMSNTPLN-----SSSVDVAVFCLSLMGI---NFPNYLQEAQRV  214 (223)
Q Consensus       162 ----~v~gvDis~---------------~~~~~~~~d~~~lp~~-----~~sfD~Vi~~~~l~~~---d~~~~l~e~~rv  214 (223)
                          +|+|||.++               ..+.++.+|++++.++     ...+|+||+-+.-...   -.+.+|..+.|.
T Consensus       444 ~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~  523 (745)
T 3ua3_A          444 SLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGF  523 (745)
T ss_dssp             CCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGG
T ss_pred             ccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHh
Confidence                899999986               4589999999988763     5789999998886554   345899999999


Q ss_pred             cCCCCEEE
Q 027441          215 LKPRGEEQ  222 (223)
Q Consensus       215 LkpgG~lv  222 (223)
                      |+|||+++
T Consensus       524 Lkp~Gi~i  531 (745)
T 3ua3_A          524 LKPTTISI  531 (745)
T ss_dssp             SCTTCEEE
T ss_pred             CCCCcEEE
Confidence            99999876

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.83  E-value=4.4e-09  Score=89.63  Aligned_cols=74  Identities=22%  Similarity=0.201  Sum_probs=60.6

Q ss_pred             chHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCce
Q 027441          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       127 ~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      ..++.|++.+... ++.+|||||||+|.++..|+   .+|+|+|+++             .++.++.+|+..+++++..|
T Consensus        37 ~i~~~Iv~~l~~~-~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f  115 (295)
T 3gru_A           37 NFVNKAVESANLT-KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF  115 (295)
T ss_dssp             HHHHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred             HHHHHHHHhcCCC-CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence            3445666666544 67899999999999999887   5899999997             46789999999998888889


Q ss_pred             eEEEEcccccC
Q 027441          191 DVAVFCLSLMG  201 (223)
Q Consensus       191 D~Vi~~~~l~~  201 (223)
                      |+|+++..++.
T Consensus       116 D~Iv~NlPy~i  126 (295)
T 3gru_A          116 NKVVANLPYQI  126 (295)
T ss_dssp             SEEEEECCGGG
T ss_pred             cEEEEeCcccc
Confidence            99998866543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.83  E-value=1.1e-09  Score=96.68  Aligned_cols=83  Identities=14%  Similarity=0.105  Sum_probs=65.0

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------C-CCcEEEccCCCCCC----CCCceeEEEEc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N-DPSVIACDMSNTPL----NSSSVDVAVFC  196 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~-~~~~~~~d~~~lp~----~~~sfD~Vi~~  196 (223)
                      ++.+|||+|||+|.++..++    .+|+|+|+++               . ++.++.+|+..+..    ...+||+|++.
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            67899999999999998887    3799999997               1 57788888866421    25789999985


Q ss_pred             cccc---------CC-CHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLM---------GI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~---------~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -...         +. +...++.++.++|+|||+|++
T Consensus       297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~  333 (396)
T 2as0_A          297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT  333 (396)
T ss_dssp             CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            4321         11 456899999999999998874

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.82  E-value=7.2e-09  Score=92.90  Aligned_cols=97  Identities=16%  Similarity=0.236  Sum_probs=73.2

Q ss_pred             CCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc------------------CceEEEecCC---------------C
Q 027441          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------------------NKVFSFDLVS---------------N  171 (223)
Q Consensus       125 p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------------------~~v~gvDis~---------------~  171 (223)
                      |....+.+.+.+... ++.+|||.|||+|.++..++                  ..++|+|+++               .
T Consensus       156 P~~v~~~mv~~l~~~-~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          156 PRPLIQAMVDCINPQ-MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             CHHHHHHHHHHHCCC-TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHhCCC-CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            555566666666543 56799999999999776543                  4699999997               1


Q ss_pred             --CCcEEEccCCCCCCCCCceeEEEEcccccCC---C---------------HHHHHHHHHHccCCCCEEEc
Q 027441          172 --DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---N---------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       172 --~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d---------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                        ++.+..+|....+.. ..||+|++.-.+.+.   +               ...++..+.++|+|||.++|
T Consensus       235 ~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          235 TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence              567888998776644 489999998766643   1               13789999999999999864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.80  E-value=1.1e-08  Score=91.52  Aligned_cols=89  Identities=16%  Similarity=0.269  Sum_probs=64.4

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC----CCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN----TPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~----lp~~~~  188 (223)
                      .+++++.. .++.+|||+|||+|.++..++   .+|+|+|+++               .++.|+.+|+..    +|+.++
T Consensus       277 ~~~~~l~~-~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~  355 (433)
T 1uwv_A          277 RALEWLDV-QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN  355 (433)
T ss_dssp             HHHHHHTC-CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTT
T ss_pred             HHHHhhcC-CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcC
Confidence            34444433 256899999999999999988   5799999996               367899999977    445677


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++.--....  ..++..+. .++|++++++
T Consensus       356 ~fD~Vv~dPPr~g~--~~~~~~l~-~~~p~~ivyv  387 (433)
T 1uwv_A          356 GFDKVLLDPARAGA--AGVMQQII-KLEPIRIVYV  387 (433)
T ss_dssp             CCSEEEECCCTTCC--HHHHHHHH-HHCCSEEEEE
T ss_pred             CCCEEEECCCCccH--HHHHHHHH-hcCCCeEEEE
Confidence            89999986443333  24555444 3688888764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.80  E-value=4.6e-09  Score=92.92  Aligned_cols=83  Identities=12%  Similarity=0.007  Sum_probs=61.6

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCC-CCCCCceeEEEEcccccC-
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNT-PLNSSSVDVAVFCLSLMG-  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~~l~~-  201 (223)
                      ++.+|||+|||+|.++..++   ..|+++|+|+              ....+..+|+..+ +...+.||+|++.-.... 
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~  293 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK  293 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence            47899999999999999887   4599999997              1234667777553 221334999998644311 


Q ss_pred             --------C-CHHHHHHHHHHccCCCCEEEc
Q 027441          202 --------I-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 --------~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                              . +...++..+.++|+|||+|++
T Consensus       294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~  324 (393)
T 4dmg_A          294 RPEELPAMKRHLVDLVREALRLLAEEGFLWL  324 (393)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                    1 345899999999999999973

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.75  E-value=3.1e-08  Score=88.40  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=60.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                      .++.+|||+|||+|.++..++   .+|+|+|+++              ..+.|+.+|+..++..  .||+|++.-.....
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~g~  366 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDPPRAGL  366 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCTTCS
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCccch
Confidence            367899999999999999887   5799999997              1267889999887532  89999986543222


Q ss_pred             CHHHHHHHHHHccCCCCEEEc
Q 027441          203 NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      + ..++..+ +.|+|||++++
T Consensus       367 ~-~~~~~~l-~~l~p~givyv  385 (425)
T 2jjq_A          367 H-PRLVKRL-NREKPGVIVYV  385 (425)
T ss_dssp             C-HHHHHHH-HHHCCSEEEEE
T ss_pred             H-HHHHHHH-HhcCCCcEEEE
Confidence            2 2455555 45999999985

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.71  E-value=2.9e-08  Score=87.12  Aligned_cols=82  Identities=20%  Similarity=0.271  Sum_probs=58.1

Q ss_pred             CCeEEEECCcchHHHHHhc--------------------CceEEEecCCCC---------------------------Cc
Q 027441          142 SLVIADFGCGDARLAKSVK--------------------NKVFSFDLVSND---------------------------PS  174 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la--------------------~~v~gvDis~~~---------------------------~~  174 (223)
                      ..+|+|+|||+|..+..+.                    -+|+.-|+...+                           ..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            4789999999999877663                    135555654411                           12


Q ss_pred             EEEcc---CCCCCCCCCceeEEEEcccccCC-C--------------------------------------HHHHHHHHH
Q 027441          175 VIACD---MSNTPLNSSSVDVAVFCLSLMGI-N--------------------------------------FPNYLQEAQ  212 (223)
Q Consensus       175 ~~~~d---~~~lp~~~~sfD~Vi~~~~l~~~-d--------------------------------------~~~~l~e~~  212 (223)
                      |+.+.   .-.-.|++++||+|+++.+|||+ +                                      +..+|...+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222   22234789999999999999998 2                                      224688889


Q ss_pred             HccCCCCEEEc
Q 027441          213 RVLKPRGEEQI  223 (223)
Q Consensus       213 rvLkpgG~lvi  223 (223)
                      +.|+|||.|++
T Consensus       213 ~eL~pGG~mvl  223 (374)
T 3b5i_A          213 AEVKRGGAMFL  223 (374)
T ss_dssp             HHEEEEEEEEE
T ss_pred             HHhCCCCEEEE
Confidence            99999999985

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.70  E-value=2.7e-08  Score=83.44  Aligned_cols=83  Identities=18%  Similarity=0.183  Sum_probs=59.9

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCCC-------------CCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------------DPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~-------------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      .+..+|||||||+|.|+.+++     ..|+|+|+...             ++..+..++....++...+|+|+|.++.. 
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmApn-  167 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGES-  167 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCCC-
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCccC-
Confidence            467899999999999999876     26889999741             12222323333345678899999999888 


Q ss_pred             C-----CHH---HHHHHHHHccCCC--CEEEc
Q 027441          202 I-----NFP---NYLQEAQRVLKPR--GEEQI  223 (223)
Q Consensus       202 ~-----d~~---~~l~e~~rvLkpg--G~lvi  223 (223)
                      .     |-.   .+|.-+.++|+||  |.|++
T Consensus       168 sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~  199 (282)
T 3gcz_A          168 SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI  199 (282)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence            4     222   3567778999999  99975

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.59  E-value=2.6e-07  Score=78.01  Aligned_cols=92  Identities=11%  Similarity=0.045  Sum_probs=63.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhcC-----ceEEEecCCC-------------CCcEEEccCCCCCCCCCcee
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-----KVFSFDLVSN-------------DPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la~-----~v~gvDis~~-------------~~~~~~~d~~~lp~~~~sfD  191 (223)
                      ..+.+. ....++.+||||||++|.|+.++..     .|.|+|+...             ++.....++.-..+....||
T Consensus        71 ~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~D  149 (300)
T 3eld_A           71 RWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSD  149 (300)
T ss_dssp             HHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred             HHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcC
Confidence            344444 4445788999999999999999984     5788998741             11112222222344567899


Q ss_pred             EEEEcccccCC-CH----H---HHHHHHHHccCCC-CEEEc
Q 027441          192 VAVFCLSLMGI-NF----P---NYLQEAQRVLKPR-GEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~-d~----~---~~l~e~~rvLkpg-G~lvi  223 (223)
                      +|+|..+.. . .+    .   .+|.-+.++|+|| |.|++
T Consensus       150 lVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~  189 (300)
T 3eld_A          150 TLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCV  189 (300)
T ss_dssp             EEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred             EEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            999998877 4 22    1   4577778999999 99975

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.58  E-value=7.3e-08  Score=80.36  Aligned_cols=69  Identities=13%  Similarity=0.173  Sum_probs=53.6

Q ss_pred             hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCC----
Q 027441          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNS----  187 (223)
Q Consensus       128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~----  187 (223)
                      ..+.|++.+... ++.+|||||||+|.++..|+   .+|+|+|+++             .++.++.+|+..+++++    
T Consensus        17 i~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~   95 (255)
T 3tqs_A           17 VLQKIVSAIHPQ-KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTD   95 (255)
T ss_dssp             HHHHHHHHHCCC-TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCS
T ss_pred             HHHHHHHhcCCC-CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccC
Confidence            345666666544 67899999999999999998   5899999996             46789999999987653    


Q ss_pred             CceeEEEEccc
Q 027441          188 SSVDVAVFCLS  198 (223)
Q Consensus       188 ~sfD~Vi~~~~  198 (223)
                      ..|| |+++.-
T Consensus        96 ~~~~-vv~NlP  105 (255)
T 3tqs_A           96 KPLR-VVGNLP  105 (255)
T ss_dssp             SCEE-EEEECC
T ss_pred             CCeE-EEecCC
Confidence            5688 555443

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.55  E-value=7.3e-08  Score=81.06  Aligned_cols=72  Identities=14%  Similarity=0.071  Sum_probs=56.3

Q ss_pred             hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC------------CCCcEEEccCCCCCCCCC-cee
Q 027441          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------NDPSVIACDMSNTPLNSS-SVD  191 (223)
Q Consensus       128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------~~~~~~~~d~~~lp~~~~-sfD  191 (223)
                      ..+.|++.+... ++ +|||||||+|.++..|+   .+|+|+|+++            .++.++.+|+..+++++. .+|
T Consensus        35 i~~~Iv~~~~~~-~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~  112 (271)
T 3fut_A           35 HLRRIVEAARPF-TG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS  112 (271)
T ss_dssp             HHHHHHHHHCCC-CS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred             HHHHHHHhcCCC-CC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence            445666666544 56 99999999999999887   5899999997            357889999988887643 688


Q ss_pred             EEEEcccccC
Q 027441          192 VAVFCLSLMG  201 (223)
Q Consensus       192 ~Vi~~~~l~~  201 (223)
                      .|+++.-.+-
T Consensus       113 ~iv~NlPy~i  122 (271)
T 3fut_A          113 LLVANLPYHI  122 (271)
T ss_dssp             EEEEEECSSC
T ss_pred             EEEecCcccc
Confidence            8888765543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.49  E-value=8.3e-08  Score=84.42  Aligned_cols=82  Identities=20%  Similarity=0.321  Sum_probs=56.9

Q ss_pred             CCeEEEECCcchHHHHHhcC----------------------ceEEEecCC------------------------CCCcE
Q 027441          142 SLVIADFGCGDARLAKSVKN----------------------KVFSFDLVS------------------------NDPSV  175 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la~----------------------~v~gvDis~------------------------~~~~~  175 (223)
                      ..+|+|+|||+|..+..+..                      +|+.-|+..                        ....|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            57899999999997775541                      234455542                        01234


Q ss_pred             EEccCCC---CCCCCCceeEEEEcccccCC-CHH---------------------------------------HHHHHHH
Q 027441          176 IACDMSN---TPLNSSSVDVAVFCLSLMGI-NFP---------------------------------------NYLQEAQ  212 (223)
Q Consensus       176 ~~~d~~~---lp~~~~sfD~Vi~~~~l~~~-d~~---------------------------------------~~l~e~~  212 (223)
                      +.+....   -.|++++||+|+++.+|||+ +.+                                       .+|....
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443322   45789999999999999998 322                                       1256668


Q ss_pred             HccCCCCEEEc
Q 027441          213 RVLKPRGEEQI  223 (223)
Q Consensus       213 rvLkpgG~lvi  223 (223)
                      +.|+|||.|++
T Consensus       213 ~eL~pGG~mvl  223 (384)
T 2efj_A          213 EELISRGRMLL  223 (384)
T ss_dssp             HHEEEEEEEEE
T ss_pred             HHhccCCeEEE
Confidence            99999999985

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.47  E-value=1.1e-07  Score=87.43  Aligned_cols=98  Identities=16%  Similarity=0.251  Sum_probs=70.5

Q ss_pred             CCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----------------------CceEEEecCC-----------
Q 027441          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----------------------NKVFSFDLVS-----------  170 (223)
Q Consensus       125 p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----------------------~~v~gvDis~-----------  170 (223)
                      |...+..+.+.+... ++.+|||.|||+|.++..+.                       ..++|+|+++           
T Consensus       154 P~~iv~~mv~~l~p~-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~  232 (541)
T 2ar0_A          154 PRPLIKTIIHLLKPQ-PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  232 (541)
T ss_dssp             CHHHHHHHHHHHCCC-TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhccC-CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence            444555566665543 67899999999999766543                       2689999997           


Q ss_pred             ----CC-----CcEEEccCCCCC-CCCCceeEEEEcccccCC-C--------------HHHHHHHHHHccCCCCEEEc
Q 027441          171 ----ND-----PSVIACDMSNTP-LNSSSVDVAVFCLSLMGI-N--------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 ----~~-----~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~~~-d--------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                          ..     +.+..+|....+ .....||+|++.--+... .              ...++..+.+.|+|||+++|
T Consensus       233 l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~  310 (541)
T 2ar0_A          233 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV  310 (541)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence                22     567888875543 345789999997655432 1              23799999999999999874

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.46  E-value=7.7e-08  Score=84.14  Aligned_cols=77  Identities=8%  Similarity=0.184  Sum_probs=56.4

Q ss_pred             CCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCC--CCC--------------
Q 027441          142 SLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTP--LNS--------------  187 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp--~~~--------------  187 (223)
                      +.+|||+|||+|.++..++   .+|+|+|+++               .++.|+.+|+..+.  +..              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~  293 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS  293 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred             CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence            5789999999999999887   5799999997               35778888886531  111              


Q ss_pred             CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..||+|++.--..     .+..++.+.|+++|.+++
T Consensus       294 ~~fD~Vv~dPPr~-----g~~~~~~~~l~~~g~ivy  324 (369)
T 3bt7_A          294 YQCETIFVDPPRS-----GLDSETEKMVQAYPRILY  324 (369)
T ss_dssp             CCEEEEEECCCTT-----CCCHHHHHHHTTSSEEEE
T ss_pred             CCCCEEEECcCcc-----ccHHHHHHHHhCCCEEEE
Confidence            3799998543211     235567777888888763

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.46  E-value=4.8e-07  Score=78.97  Aligned_cols=75  Identities=12%  Similarity=-0.014  Sum_probs=60.6

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCCCHHHHH
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL  208 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l  208 (223)
                      .++.+||||||++|.|+..+.   ..|+|||+.+        +++.++.+|+..+..+...||+|+|-++..   +...+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~~~~  286 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PAKVA  286 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HHHHH
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hHHhH
Confidence            478999999999999999988   6899999987        567889999988877778999999998853   45555


Q ss_pred             HHHHHccCC
Q 027441          209 QEAQRVLKP  217 (223)
Q Consensus       209 ~e~~rvLkp  217 (223)
                      .-+.+.|..
T Consensus       287 ~l~~~wl~~  295 (375)
T 4auk_A          287 ALMAQWLVN  295 (375)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            555554444

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.42  E-value=4.7e-07  Score=74.98  Aligned_cols=82  Identities=17%  Similarity=0.096  Sum_probs=57.7

Q ss_pred             cCCCCeEEEECCcchHHHHHhcCc--e-------EEEe--cCCC-----CCcEEE---c-cCCCCCCCCCceeEEEEccc
Q 027441          139 HSPSLVIADFGCGDARLAKSVKNK--V-------FSFD--LVSN-----DPSVIA---C-DMSNTPLNSSSVDVAVFCLS  198 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a~~la~~--v-------~gvD--is~~-----~~~~~~---~-d~~~lp~~~~sfD~Vi~~~~  198 (223)
                      ..++.+||||||++|.|+.+++..  |       +|+|  +.|.     .+.++.   + |+..++  ...+|+|+|-++
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSDMA  148 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCDIG  148 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEECCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeCCC
Confidence            357899999999999999998744  3       4556  3332     224444   5 887643  567999999987


Q ss_pred             ccCC-----CHH---HHHHHHHHccCCCC-EEEc
Q 027441          199 LMGI-----NFP---NYLQEAQRVLKPRG-EEQI  223 (223)
Q Consensus       199 l~~~-----d~~---~~l~e~~rvLkpgG-~lvi  223 (223)
                      -. .     |-.   .+|.-+.++|+||| .|++
T Consensus       149 Pn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv  181 (269)
T 2px2_A          149 ES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCI  181 (269)
T ss_dssp             CC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence            65 3     222   35666779999999 7764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.41  E-value=8.3e-07  Score=75.95  Aligned_cols=83  Identities=13%  Similarity=0.085  Sum_probs=58.7

Q ss_pred             cCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCC---CceeEEE
Q 027441          139 HSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNS---SSVDVAV  194 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~---~sfD~Vi  194 (223)
                      ..++.+|||+|||+|..+..++      ..|+++|+++               .++.++.+|+..++...   ..||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            3478899999999999888776      4799999997               35778889987765432   5799999


Q ss_pred             Ec------ccccC-CC-----------H-------HHHHHHHHHccCCCCEEE
Q 027441          195 FC------LSLMG-IN-----------F-------PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       195 ~~------~~l~~-~d-----------~-------~~~l~e~~rvLkpgG~lv  222 (223)
                      +.      .++.. .|           .       ..+|..+.++|+ ||.|+
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lv  231 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLV  231 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEE
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEE
Confidence            62      12211 11           1       146778888886 89886

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.41  E-value=3.8e-07  Score=75.64  Aligned_cols=59  Identities=24%  Similarity=0.309  Sum_probs=46.6

Q ss_pred             hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC-----------CCCcEEEccCCCCCCCC
Q 027441          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------NDPSVIACDMSNTPLNS  187 (223)
Q Consensus       128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------~~~~~~~~d~~~lp~~~  187 (223)
                      ..+.|++.+... ++.+|||||||+|.++..++    .+|+|+|+++           .++.++.+|+..+++++
T Consensus        19 i~~~iv~~~~~~-~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           19 VLKKIAEELNIE-EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHHTTCC-TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred             HHHHHHHhcCCC-CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence            345566665544 67899999999999999987    4799999996           24678899999988764

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.39  E-value=5e-07  Score=79.79  Aligned_cols=83  Identities=12%  Similarity=0.097  Sum_probs=61.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc---C----------------------------------------ceEEEecCC------
Q 027441          140 SPSLVIADFGCGDARLAKSVK---N----------------------------------------KVFSFDLVS------  170 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~----------------------------------------~v~gvDis~------  170 (223)
                      .++..|||.+||+|.++..++   .                                        +|+|+|+++      
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            367899999999999876654   2                                        399999997      


Q ss_pred             ----------CCCcEEEccCCCCCCCCCceeEEEEcccccC-C----CHHHHHHHHHHccCC--CCEEEc
Q 027441          171 ----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG-I----NFPNYLQEAQRVLKP--RGEEQI  223 (223)
Q Consensus       171 ----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~-~----d~~~~l~e~~rvLkp--gG~lvi  223 (223)
                                ..+.+..+|+..++.+ .+||+|++.--+.. +    +...+..++.++|++  ||.++|
T Consensus       280 r~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  348 (393)
T 3k0b_A          280 KQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV  348 (393)
T ss_dssp             HHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred             HHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence                      2478999999988765 58999999855431 2    233556666666665  887764

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.35  E-value=2.4e-07  Score=80.84  Aligned_cols=83  Identities=20%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             CCCeEEEECCcchHHHHHhc---------------------CceEEEecCC----------C------CCcEEEccC---
Q 027441          141 PSLVIADFGCGDARLAKSVK---------------------NKVFSFDLVS----------N------DPSVIACDM---  180 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---------------------~~v~gvDis~----------~------~~~~~~~d~---  180 (223)
                      ...+|+|+||++|..+..+.                     -+|+..|+..          +      +..|+.+..   
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            34789999999998665443                     1355667654          1      224444433   


Q ss_pred             CCCCCCCCceeEEEEcccccCC-C---------------------------------HHHHHHHHHHccCCCCEEEc
Q 027441          181 SNTPLNSSSVDVAVFCLSLMGI-N---------------------------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       181 ~~lp~~~~sfD~Vi~~~~l~~~-d---------------------------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -.-.|+++++|+|+++.+|||+ +                                 +..+|....+.|+|||.|++
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            3356889999999999999997 2                                 12458889999999999985

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.34  E-value=3.4e-07  Score=80.68  Aligned_cols=83  Identities=10%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             CCCCeEEEECCcchHHHHHhc-------------------------------------------CceEEEecCC------
Q 027441          140 SPSLVIADFGCGDARLAKSVK-------------------------------------------NKVFSFDLVS------  170 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-------------------------------------------~~v~gvDis~------  170 (223)
                      .++..|||+|||+|.++..++                                           ..|+|+|+++      
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            367899999999999877664                                           1499999997      


Q ss_pred             ----------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-----CHHHHHHHHHHccCC--CCEEEc
Q 027441          171 ----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-----NFPNYLQEAQRVLKP--RGEEQI  223 (223)
Q Consensus       171 ----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-----d~~~~l~e~~rvLkp--gG~lvi  223 (223)
                                ..+.+.++|+.+++.+ .+||+|++.--+..-     +...+..++.++|++  ||.++|
T Consensus       274 r~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  342 (385)
T 3ldu_A          274 RENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL  342 (385)
T ss_dssp             HHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred             HHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence                      2577899999888764 589999997665422     334667777777776  777664

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.30  E-value=1.3e-06  Score=76.85  Aligned_cols=83  Identities=13%  Similarity=0.136  Sum_probs=62.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc---C----------------------------------------ceEEEecCC------
Q 027441          140 SPSLVIADFGCGDARLAKSVK---N----------------------------------------KVFSFDLVS------  170 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~----------------------------------------~v~gvDis~------  170 (223)
                      .++..|||.+||+|.++..++   .                                        .|+|+|+++      
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            367899999999999876654   2                                        399999997      


Q ss_pred             ----------CCCcEEEccCCCCCCCCCceeEEEEccccc-CC----CHHHHHHHHHHccCC--CCEEEc
Q 027441          171 ----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM-GI----NFPNYLQEAQRVLKP--RGEEQI  223 (223)
Q Consensus       171 ----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~-~~----d~~~~l~e~~rvLkp--gG~lvi  223 (223)
                                ..+.+..+|+..++.+ .+||+|++.--+. -+    +...+..++.+.|++  ||.++|
T Consensus       273 r~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  341 (384)
T 3ldg_A          273 RKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI  341 (384)
T ss_dssp             HHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             HHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence                      2478899999988765 4899999985543 12    344667777777776  887764

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.30  E-value=2.5e-06  Score=69.82  Aligned_cols=81  Identities=17%  Similarity=0.183  Sum_probs=60.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEc-cCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIAC-DMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~-d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++..||||||++|.|+.+++     .+|+|+|+-.              ..+.|..+ |+..++  ...+|.|+|...=
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcDIge  154 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCDIGE  154 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEECCCC
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC--CccccEEEEecCC
Confidence            477899999999999999876     4799999986              23456666 765554  3669999998876


Q ss_pred             cCCCHH-------HHHHHHHHccCCCCEEEc
Q 027441          200 MGINFP-------NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~~-------~~l~e~~rvLkpgG~lvi  223 (223)
                      ..-++.       .+|+-+.+.|++ |-|+|
T Consensus       155 Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          155 SSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             CCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence            433332       466667788888 66654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.29  E-value=1e-06  Score=67.08  Aligned_cols=68  Identities=7%  Similarity=0.202  Sum_probs=51.3

Q ss_pred             HHHHHHhcc-CCCCeEEEECCcch-HHHHHhcC----ceEEEecCCCCCcEEEccCCCCCCCC-CceeEEEEccc
Q 027441          131 IIVKWLKDH-SPSLVIADFGCGDA-RLAKSVKN----KVFSFDLVSNDPSVIACDMSNTPLNS-SSVDVAVFCLS  198 (223)
Q Consensus       131 ~i~~~l~~~-~~~~~ILDiGcG~G-~~a~~la~----~v~gvDis~~~~~~~~~d~~~lp~~~-~sfD~Vi~~~~  198 (223)
                      .|..++... .+..+|||||||.| ..+..|+.    .|+++|+++..+.+++.|+.+..+.- ..||+|.+..-
T Consensus        24 ~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYsirP   98 (153)
T 2k4m_A           24 DLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIRP   98 (153)
T ss_dssp             HHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEEESC
T ss_pred             HHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccceEEccCCCCcccccCCcCEEEEcCC
Confidence            444454332 34579999999999 59998873    69999999988889999998744321 47999986654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.26  E-value=1e-07  Score=79.51  Aligned_cols=61  Identities=13%  Similarity=0.059  Sum_probs=48.0

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC-----------------------CCCcEEEccCCCC-C-CCC--Cce
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------------------NDPSVIACDMSNT-P-LNS--SSV  190 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-----------------------~~~~~~~~d~~~l-p-~~~--~sf  190 (223)
                      ++.+|||+|||+|.++..++   .+|+|+|+++                       .++.++.+|+..+ + +++  ++|
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f  162 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP  162 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence            56899999999999999887   5899999998                       2377888888763 3 444  689


Q ss_pred             eEEEEcccccC
Q 027441          191 DVAVFCLSLMG  201 (223)
Q Consensus       191 D~Vi~~~~l~~  201 (223)
                      |+|++.-.+++
T Consensus       163 D~V~~dP~~~~  173 (258)
T 2r6z_A          163 DIVYLDPMYPE  173 (258)
T ss_dssp             SEEEECCCC--
T ss_pred             cEEEECCCCCC
Confidence            99999766554

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.23  E-value=3.6e-07  Score=80.71  Aligned_cols=80  Identities=11%  Similarity=-0.017  Sum_probs=60.9

Q ss_pred             CCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CC--CcEEEccCCCCC--CCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------ND--PSVIACDMSNTP--LNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~--~~~~~~d~~~lp--~~~~sfD~Vi~  195 (223)
                      ++.+|||++||+|.++..++      .+|+++|+++               .+  +.++.+|+..+.  .....||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            57899999999999888776      3689999997               23  677788874431  11457999997


Q ss_pred             cccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .-   +-....++..+.+.|+|||+|++
T Consensus       132 DP---~g~~~~~l~~a~~~Lk~gGll~~  156 (392)
T 3axs_A          132 DP---FGTPVPFIESVALSMKRGGILSL  156 (392)
T ss_dssp             CC---SSCCHHHHHHHHHHEEEEEEEEE
T ss_pred             CC---CcCHHHHHHHHHHHhCCCCEEEE
Confidence            65   22335789999999999998874

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.22  E-value=9.3e-07  Score=74.59  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=46.8

Q ss_pred             hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---Cc----eEEEecCC-----------CCCcEEEccCCCCCCCC
Q 027441          128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NK----VFSFDLVS-----------NDPSVIACDMSNTPLNS  187 (223)
Q Consensus       128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~----v~gvDis~-----------~~~~~~~~d~~~lp~~~  187 (223)
                      ..+.|++.+... ++.+|||||||+|.++..|+   ..    |+|+|+++           .++.++.+|+..+++++
T Consensus        30 i~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           30 VIDAIVAAIRPE-RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHHHHHHHCCC-TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             HHHHHHHhcCCC-CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            345666666544 67899999999999999887   45    99999997           35788999998887653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.22  E-value=4.1e-07  Score=75.61  Aligned_cols=69  Identities=13%  Similarity=0.083  Sum_probs=50.5

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc--Cc--eEEEecCC-------------CCCcEEEccCCCCCCCCC---
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK--NK--VFSFDLVS-------------NDPSVIACDMSNTPLNSS---  188 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la--~~--v~gvDis~-------------~~~~~~~~d~~~lp~~~~---  188 (223)
                      .+.|++.+... ++.+|||||||+|.++. +.  .+  |+|+|+++             .++.++.+|+..+++++.   
T Consensus        10 ~~~iv~~~~~~-~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~   87 (252)
T 1qyr_A           10 IDSIVSAINPQ-KGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEK   87 (252)
T ss_dssp             HHHHHHHHCCC-TTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHH
T ss_pred             HHHHHHhcCCC-CcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcc
Confidence            35566666543 67899999999999999 75  56  99999996             256788999988876432   


Q ss_pred             --ceeEEEEcccc
Q 027441          189 --SVDVAVFCLSL  199 (223)
Q Consensus       189 --sfD~Vi~~~~l  199 (223)
                        ..|.|+++...
T Consensus        88 ~~~~~~vvsNlPY  100 (252)
T 1qyr_A           88 MGQPLRVFGNLPY  100 (252)
T ss_dssp             HTSCEEEEEECCT
T ss_pred             cCCceEEEECCCC
Confidence              34667666543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.20  E-value=3e-07  Score=80.81  Aligned_cols=80  Identities=14%  Similarity=0.015  Sum_probs=59.1

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC------------C---------------C---CcEEEccCCCCCC
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------N---------------D---PSVIACDMSNTPL  185 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------~---------------~---~~~~~~d~~~lp~  185 (223)
                      ++.+|||+|||+|..+..++     .+|+++|+++            .               .   +.++.+|+..+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            57899999999999888776     3699999997            1               2   4466677644321


Q ss_pred             -CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          186 -NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 -~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       ....||+|++.-   ......++..+.+.|+|||+|++
T Consensus       127 ~~~~~fD~I~lDP---~~~~~~~l~~a~~~lk~gG~l~v  162 (378)
T 2dul_A          127 ERHRYFHFIDLDP---FGSPMEFLDTALRSAKRRGILGV  162 (378)
T ss_dssp             HSTTCEEEEEECC---SSCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hccCCCCEEEeCC---CCCHHHHHHHHHHhcCCCCEEEE
Confidence             135799999532   12346899999999999998864

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.20  E-value=3.4e-06  Score=77.44  Aligned_cols=98  Identities=15%  Similarity=0.058  Sum_probs=66.9

Q ss_pred             CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc--------------------CceEEEecCC-------------
Q 027441          124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK--------------------NKVFSFDLVS-------------  170 (223)
Q Consensus       124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la--------------------~~v~gvDis~-------------  170 (223)
                      -|...+..|.+.+...  ..+|||.+||+|.+...+.                    ..++|+|+++             
T Consensus       229 TP~~Vv~lmv~ll~p~--~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~  306 (544)
T 3khk_A          229 TPKSIVTLIVEMLEPY--KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR  306 (544)
T ss_dssp             CCHHHHHHHHHHHCCC--SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhcC--CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh
Confidence            4556666666666543  3499999999999766542                    3689999997             


Q ss_pred             ---CCCcEEEccCCCCC-CCCCceeEEEEcccccC-------------------------C----C-HHHHHHHHHHccC
Q 027441          171 ---NDPSVIACDMSNTP-LNSSSVDVAVFCLSLMG-------------------------I----N-FPNYLQEAQRVLK  216 (223)
Q Consensus       171 ---~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~~-------------------------~----d-~~~~l~e~~rvLk  216 (223)
                         .++.+..+|....+ +.+..||+|++.--+..                         +    + .-.++..+.+.|+
T Consensus       307 gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk  386 (544)
T 3khk_A          307 GIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLA  386 (544)
T ss_dssp             TCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEE
T ss_pred             CCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhc
Confidence               12223566754433 55688999998643331                         1    0 1268999999999


Q ss_pred             CCCEEEc
Q 027441          217 PRGEEQI  223 (223)
Q Consensus       217 pgG~lvi  223 (223)
                      |||.++|
T Consensus       387 ~gGr~ai  393 (544)
T 3khk_A          387 PTGSMAL  393 (544)
T ss_dssp             EEEEEEE
T ss_pred             cCceEEE
Confidence            9999764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.19  E-value=8.7e-06  Score=68.66  Aligned_cols=81  Identities=15%  Similarity=0.181  Sum_probs=60.1

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCCC-------------C-CcEEEc-cCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------------D-PSVIAC-DMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~-------------~-~~~~~~-d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++..||||||++|.|+.+++     ..|+|+|+-..             + +.+..+ |+..++.  ..+|+|+|... 
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig-  169 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG-  169 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC-
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc-
Confidence            467899999999999999877     46999999874             2 234444 7666653  66999999888 


Q ss_pred             cCC-CHH-------HHHHHHHHccCCC-CEEEc
Q 027441          200 MGI-NFP-------NYLQEAQRVLKPR-GEEQI  223 (223)
Q Consensus       200 ~~~-d~~-------~~l~e~~rvLkpg-G~lvi  223 (223)
                      +-. ++.       .+|+-+.+.|++| |-|+|
T Consensus       170 eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          170 ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence            433 332       4667778889998 88765

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.19  E-value=6.7e-07  Score=76.26  Aligned_cols=68  Identities=19%  Similarity=0.330  Sum_probs=52.6

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC--CC-
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP--LN-  186 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp--~~-  186 (223)
                      ++.+++.+... ++.+|||+|||+|.++..++     .+|+|+|+++              .++.++.+|+..++  +. 
T Consensus        15 l~e~l~~L~~~-~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~   93 (301)
T 1m6y_A           15 VREVIEFLKPE-DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   93 (301)
T ss_dssp             HHHHHHHHCCC-TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHHhcCCC-CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence            45666777654 67899999999999988876     4799999997              35778899988765  21 


Q ss_pred             --CCceeEEEEcc
Q 027441          187 --SSSVDVAVFCL  197 (223)
Q Consensus       187 --~~sfD~Vi~~~  197 (223)
                        ..+||.|++..
T Consensus        94 ~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           94 LGIEKVDGILMDL  106 (301)
T ss_dssp             TTCSCEEEEEEEC
T ss_pred             cCCCCCCEEEEcC
Confidence              25799999754

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.16  E-value=5.4e-06  Score=70.31  Aligned_cols=84  Identities=15%  Similarity=0.165  Sum_probs=64.4

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------------CCCcEEEccCCCC-CCCCCceeEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------------NDPSVIACDMSNT-PLNSSSVDVA  193 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------------~~~~~~~~d~~~l-p~~~~sfD~V  193 (223)
                      +...+||=||.|.|..+..+.     .+|+.+||.+                    +++.++.+|...+ .-..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            356899999999999998876     4688999986                    4677888888653 3446789999


Q ss_pred             EEccccc-----CCCHHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLM-----GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~-----~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +.-..=-     ++--..++..+.++|+|||+|+.
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~  196 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVA  196 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEE
Confidence            9664311     11224899999999999999973

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.14  E-value=5.1e-07  Score=75.36  Aligned_cols=86  Identities=12%  Similarity=0.003  Sum_probs=56.4

Q ss_pred             HHHHHHHhccCCC--CeEEEECCcchHHHHHhc---CceEEEecCCC------------------------CCcEEEccC
Q 027441          130 NIIVKWLKDHSPS--LVIADFGCGDARLAKSVK---NKVFSFDLVSN------------------------DPSVIACDM  180 (223)
Q Consensus       130 ~~i~~~l~~~~~~--~~ILDiGcG~G~~a~~la---~~v~gvDis~~------------------------~~~~~~~d~  180 (223)
                      +.+.+.+... ++  .+|||+|||+|..+..++   .+|+++|+++.                        ++.++.+|+
T Consensus        76 e~l~~al~l~-~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           76 EAVAKAVGIK-GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             SHHHHHTTCB-TTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHHhccc-CCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            3455555433 45  799999999999999887   58999999971                        356778887


Q ss_pred             CC-CCCCCCceeEEEEcccccCCCHHHHHHHHHHccC
Q 027441          181 SN-TPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLK  216 (223)
Q Consensus       181 ~~-lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLk  216 (223)
                      .. ++.....||+|++.-.+.+-....++.+..++|+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~~~~~saavkk~~~~lr  191 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQ  191 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCCCC-----HHHHHHH
T ss_pred             HHHHHhCcccCCEEEEcCCCCCcccchHHHHHHHHHH
Confidence            55 3322246999999877765432334444444443

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.09  E-value=8.4e-06  Score=74.79  Aligned_cols=100  Identities=15%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             CCCchHHHHHHHHhc---cCCCCeEEEECCcchHHHHHhc--------CceEEEecCC------------C-----CCcE
Q 027441          124 WPELPVNIIVKWLKD---HSPSLVIADFGCGDARLAKSVK--------NKVFSFDLVS------------N-----DPSV  175 (223)
Q Consensus       124 ~p~~~~~~i~~~l~~---~~~~~~ILDiGcG~G~~a~~la--------~~v~gvDis~------------~-----~~~~  175 (223)
                      -|...++.|.+.+..   ..++.+|||.+||+|.+...+.        ..++|+|+++            .     ++.+
T Consensus       201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I  280 (542)
T 3lkd_A          201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL  280 (542)
T ss_dssp             CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence            455667777777663   2256899999999999766553        3689999997            1     2357


Q ss_pred             EEccCCCC--C-CCCCceeEEEEccccc--C-----------------C----C-HHHHHHHHHHccC-CCCEEEc
Q 027441          176 IACDMSNT--P-LNSSSVDVAVFCLSLM--G-----------------I----N-FPNYLQEAQRVLK-PRGEEQI  223 (223)
Q Consensus       176 ~~~d~~~l--p-~~~~sfD~Vi~~~~l~--~-----------------~----d-~~~~l~e~~rvLk-pgG~lvi  223 (223)
                      ..+|....  | +....||+|++.--+.  +                 +    + .-.++..+.+.|+ |||++.|
T Consensus       281 ~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~  356 (542)
T 3lkd_A          281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI  356 (542)
T ss_dssp             EESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred             EecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence            78887654  4 4567899999863221  1                 1    0 1258999999999 9999864

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.01  E-value=2.6e-06  Score=70.97  Aligned_cols=82  Identities=17%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             CCCeEEEECCcchHHHHHhc-----------------CceEEEecCC---------------------------------
Q 027441          141 PSLVIADFGCGDARLAKSVK-----------------NKVFSFDLVS---------------------------------  170 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----------------~~v~gvDis~---------------------------------  170 (223)
                      +..+|||||+|+|..+..+.                 .+++++|..+                                 
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            45799999999999554421                 2688999765                                 


Q ss_pred             ----------CCCcEEEccCCC-CCCCC----CceeEEEEcc-cccCC-C--HHHHHHHHHHccCCCCEEE
Q 027441          171 ----------NDPSVIACDMSN-TPLNS----SSVDVAVFCL-SLMGI-N--FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       171 ----------~~~~~~~~d~~~-lp~~~----~sfD~Vi~~~-~l~~~-d--~~~~l~e~~rvLkpgG~lv  222 (223)
                                .++.++.+|+.. +|..+    ..||+|+... +-... +  -+.+|..+.++|+|||+|+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~  210 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA  210 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEE
Confidence                      123355667644 44222    3799999853 22111 1  2489999999999999986

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.90  E-value=1.8e-05  Score=74.73  Aligned_cols=84  Identities=12%  Similarity=0.090  Sum_probs=58.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----------------------------------------------CceEEEecCC--
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----------------------------------------------NKVFSFDLVS--  170 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----------------------------------------------~~v~gvDis~--  170 (223)
                      .++..|||.+||+|.++..++                                               ..|+|+|+++  
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            367899999999999766543                                               2699999997  


Q ss_pred             --------------CCCcEEEccCCCC--CCCCCceeEEEEcccccC-C----CHH---HHHHHHHHccCCCCEEEc
Q 027441          171 --------------NDPSVIACDMSNT--PLNSSSVDVAVFCLSLMG-I----NFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 --------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l~~-~----d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                                    ..+.+..+|+..+  |...+.||+|++.--+.. +    +..   ..+.++.+.+.|||.++|
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEE
Confidence                          2367889999876  444458999999844321 1    223   334455555668998875

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.89  E-value=3.9e-05  Score=64.72  Aligned_cols=92  Identities=12%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             HHHHHHhcc----CCCCeEEEECC------cchHHHH--HhcC--ceEEEecCCCC---CcEEEccCCCCCCCCCceeEE
Q 027441          131 IIVKWLKDH----SPSLVIADFGC------GDARLAK--SVKN--KVFSFDLVSND---PSVIACDMSNTPLNSSSVDVA  193 (223)
Q Consensus       131 ~i~~~l~~~----~~~~~ILDiGc------G~G~~a~--~la~--~v~gvDis~~~---~~~~~~d~~~lp~~~~sfD~V  193 (223)
                      .+.++|...    +-+.+|||+|+      .+|.+..  .+..  .|+++|+.+..   ..++.+|+..+.. ...||+|
T Consensus        95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~-~~k~DLV  173 (344)
T 3r24_A           95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHT-ANKWDLI  173 (344)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEEE-SSCEEEE
T ss_pred             HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccCCCeEEEcccccccc-CCCCCEE
Confidence            566677432    45789999996      6676422  2222  79999999822   2458899765433 4789999


Q ss_pred             EEcccccC---CC---------HHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMG---IN---------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~---~d---------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++-++-.-   .|         .+.++.=+.++|+|||.|++
T Consensus       174 ISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV  215 (344)
T 3r24_A          174 ISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV  215 (344)
T ss_dssp             EECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence            98876542   11         34677778889999999985

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.73  E-value=8e-05  Score=59.77  Aligned_cols=77  Identities=14%  Similarity=0.107  Sum_probs=55.2

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC-------------C-----CCcEEEccCCCC---------------
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------N-----DPSVIACDMSNT---------------  183 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------~-----~~~~~~~d~~~l---------------  183 (223)
                      +..+|||+|||  +.+..++    ++|+.+|.++             .     ++.++.+|+...               
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            46899999996  4444443    6899999986             1     366777886432               


Q ss_pred             C--------C-CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          184 P--------L-NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       184 p--------~-~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +        + ..++||+|+.-....    ..++..+.+.|+|||+|++
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k~----~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRFR----VGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSSH----HHHHHHHHHHCSSCEEEEE
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCCc----hhHHHHHHHhcCCCeEEEE
Confidence            2        2 237899999877532    3677778899999999975

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.73  E-value=1.1e-05  Score=70.46  Aligned_cols=93  Identities=15%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------------CCCcEEEccCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------------NDPSVIACDMSNT  183 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------------~~~~~~~~d~~~l  183 (223)
                      ..+...+....++.+|||++||+|.=+..++     ..|+++|+++                     .++.+...|...+
T Consensus       137 S~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~  216 (359)
T 4fzv_A          137 SLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW  216 (359)
T ss_dssp             GHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH
T ss_pred             HHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc
Confidence            3444455455588999999999998666665     3699999996                     1344555666554


Q ss_pred             C-CCCCceeEEE----Eccc---ccCCC--------H----------HHHHHHHHHccCCCCEEE
Q 027441          184 P-LNSSSVDVAV----FCLS---LMGIN--------F----------PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       184 p-~~~~sfD~Vi----~~~~---l~~~d--------~----------~~~l~e~~rvLkpgG~lv  222 (223)
                      + +..+.||.|+    |+..   +..-+        .          ..+|..+.++|||||+|+
T Consensus       217 ~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LV  281 (359)
T 4fzv_A          217 GELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVV  281 (359)
T ss_dssp             HHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             chhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            3 3457899999    3432   11101        0          178888999999999987

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.69  E-value=0.00011  Score=69.99  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=56.3

Q ss_pred             CCCeEEEECCcchHHHHHhc--------CceEEEecCCCCC---------------------cEEEccCCCC-CCCCCce
Q 027441          141 PSLVIADFGCGDARLAKSVK--------NKVFSFDLVSNDP---------------------SVIACDMSNT-PLNSSSV  190 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la--------~~v~gvDis~~~~---------------------~~~~~d~~~l-p~~~~sf  190 (223)
                      ++.+|||.|||+|.++..++        ..++|+|+++..+                     .+...|+... +.....|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            46899999999999887765        2589999997321                     1222233221 2235689


Q ss_pred             eEEEEcccccC-C----------------------------C-HHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMG-I----------------------------N-FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~-~----------------------------d-~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++.--+.. .                            + ...++..+.+.|+|||.+++
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf  463 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA  463 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence            99998755421 1                            1 22578889999999999875

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.68  E-value=7.9e-06  Score=72.43  Aligned_cols=56  Identities=13%  Similarity=0.085  Sum_probs=44.7

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC------------C-----CCcEEEccCCCC-CC-CCCceeEEEEc
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------N-----DPSVIACDMSNT-PL-NSSSVDVAVFC  196 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------~-----~~~~~~~d~~~l-p~-~~~sfD~Vi~~  196 (223)
                      ++.+|||+|||+|..+..++   .+|+++|+++            .     ++.++.+|+..+ +. .+.+||+|++.
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            37899999999999998887   5799999997            1     367888898764 32 24589999985

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.67  E-value=9.8e-05  Score=62.24  Aligned_cols=83  Identities=10%  Similarity=-0.009  Sum_probs=60.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc----------CceEEEecCC---------------------------------------
Q 027441          140 SPSLVIADFGCGDARLAKSVK----------NKVFSFDLVS---------------------------------------  170 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----------~~v~gvDis~---------------------------------------  170 (223)
                      .....|||+|+..|..+..++          .+|+++|...                                       
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            356899999999999766653          4689999531                                       


Q ss_pred             ----CCCcEEEccCCC-CC-CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          171 ----NDPSVIACDMSN-TP-LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 ----~~~~~~~~d~~~-lp-~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                          .++.++.+++.+ +| ++..+||+|+.-.-. +-....+|..+.+.|+|||++++
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-y~~~~~~Le~~~p~L~pGGiIv~  242 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-YESTWDTLTNLYPKVSVGGYVIV  242 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-cccHHHHHHHHHhhcCCCEEEEE
Confidence                345677777633 33 345789999977652 22345789999999999999985

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.38  E-value=9.1e-05  Score=64.81  Aligned_cols=82  Identities=17%  Similarity=0.136  Sum_probs=57.0

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCCC-----------------------CCcEEEccCCCC----CCCCCc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN-----------------------DPSVIACDMSNT----PLNSSS  189 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~-----------------------~~~~~~~d~~~l----p~~~~s  189 (223)
                      +..+||=||.|.|..++.+.    .+|+.+||.+.                       ++.++.+|...+    +-....
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            45899999999999988876    47889999871                       133445554321    112457


Q ss_pred             eeEEEEcccccCC--C---------HHHHHHHHHHccCCCCEEE
Q 027441          190 VDVAVFCLSLMGI--N---------FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       190 fD~Vi~~~~l~~~--d---------~~~~l~e~~rvLkpgG~lv  222 (223)
                      ||+|+.-..-...  +         -..++..+.++|+|||+++
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv  328 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYF  328 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEE
Confidence            9999976432111  1         1377889999999999987

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.33  E-value=0.00058  Score=62.37  Aligned_cols=99  Identities=21%  Similarity=0.244  Sum_probs=67.2

Q ss_pred             CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc------------------CceEEEecCC---------------
Q 027441          124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------------------NKVFSFDLVS---------------  170 (223)
Q Consensus       124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------------------~~v~gvDis~---------------  170 (223)
                      -|...++.|.+.+... ++.+|+|-+||+|.+...+.                  ..++|+|+.+               
T Consensus       201 TP~~Vv~lmv~l~~p~-~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~  279 (530)
T 3ufb_A          201 TPRPVVRFMVEVMDPQ-LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL  279 (530)
T ss_dssp             CCHHHHHHHHHHHCCC-TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHhhccC-CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC
Confidence            3666677777766544 67899999999999865442                  2589999987               


Q ss_pred             CCCcEEEccCCCCCCC----CCceeEEEEcccccCC----------------CH-HHHHHHHHHccC-------CCCEEE
Q 027441          171 NDPSVIACDMSNTPLN----SSSVDVAVFCLSLMGI----------------NF-PNYLQEAQRVLK-------PRGEEQ  222 (223)
Q Consensus       171 ~~~~~~~~d~~~lp~~----~~sfD~Vi~~~~l~~~----------------d~-~~~l~e~~rvLk-------pgG~lv  222 (223)
                      ....+..+|.-..|+.    ...||+|++.--+..-                +. ..++..+.+.|+       |||++.
T Consensus       280 ~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~a  359 (530)
T 3ufb_A          280 EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAA  359 (530)
T ss_dssp             SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEE
T ss_pred             ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEE
Confidence            2344566666554432    3579999988655311                11 157788888887       799886


Q ss_pred             c
Q 027441          223 I  223 (223)
Q Consensus       223 i  223 (223)
                      |
T Consensus       360 v  360 (530)
T 3ufb_A          360 V  360 (530)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.25  E-value=0.00036  Score=58.68  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-----------CCCcEEEccCCCCC-----CCCCc
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTP-----LNSSS  189 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-----------~~~~~~~~d~~~lp-----~~~~s  189 (223)
                      ++.+++.|... ++..+||.+||.|..+..++   .+|+|+|.++           .++.++.+++.+++     .....
T Consensus        11 l~e~le~L~~~-~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~~   89 (285)
T 1wg8_A           11 YQEALDLLAVR-PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER   89 (285)
T ss_dssp             HHHHHHHHTCC-TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred             HHHHHHhhCCC-CCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCCC
Confidence            45667777654 78899999999999999887   5899999997           35678888887653     22357


Q ss_pred             eeEEEEccc
Q 027441          190 VDVAVFCLS  198 (223)
Q Consensus       190 fD~Vi~~~~  198 (223)
                      ||.|++...
T Consensus        90 vDgIL~DLG   98 (285)
T 1wg8_A           90 VDGILADLG   98 (285)
T ss_dssp             EEEEEEECS
T ss_pred             cCEEEeCCc
Confidence            999997554

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.07  E-value=0.00042  Score=73.63  Aligned_cols=83  Identities=17%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CCCeEEEECCcchHHHHHhc----------CceEEEecCCCCC-----cE-----EE--ccCCCC-CCCCCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK----------NKVFSFDLVSNDP-----SV-----IA--CDMSNT-PLNSSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----------~~v~gvDis~~~~-----~~-----~~--~d~~~l-p~~~~sfD~Vi~~~  197 (223)
                      +..+||+||.|+|..+..+.          ..++..|+|+...     .|     ..  .|.... ++....||+||++.
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence            56899999999997654332          2466788886322     11     11  132222 44567899999999


Q ss_pred             cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++|.+ +....|..+.++|+|||.|++
T Consensus      1320 vl~~t~~~~~~l~~~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A         1320 ALATLGDPAVAVGNMAATLKEGGFLLL 1346 (2512)
T ss_dssp             C--------------------CCEEEE
T ss_pred             cccccccHHHHHHHHHHhcCCCcEEEE
Confidence            99877 888999999999999999874

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.32  E-value=0.0024  Score=53.79  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=27.6

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCCC
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN  171 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~  171 (223)
                      .++..|||++||+|..+..++   .+++|+|+++.
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~  268 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPR  268 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHH
Confidence            367899999999999888776   68999999973

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=95.85  E-value=0.0093  Score=50.65  Aligned_cols=82  Identities=16%  Similarity=0.116  Sum_probs=52.8

Q ss_pred             CCCeEEEECCcchHHHH-Hhc--------C--ceEEEecCC---------------------------C--CCcEEEccC
Q 027441          141 PSLVIADFGCGDARLAK-SVK--------N--KVFSFDLVS---------------------------N--DPSVIACDM  180 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~-~la--------~--~v~gvDis~---------------------------~--~~~~~~~d~  180 (223)
                      +..+|||+|-|+|..+. .+.        .  +++++|..+                           .  ...+..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            45789999999998432 121        1  356666532                           0  123455666


Q ss_pred             CC-CC-CCCCceeEEEEcccccCCCHH----HHHHHHHHccCCCCEEE
Q 027441          181 SN-TP-LNSSSVDVAVFCLSLMGINFP----NYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       181 ~~-lp-~~~~sfD~Vi~~~~l~~~d~~----~~l~e~~rvLkpgG~lv  222 (223)
                      .. ++ +.+..||+|+.-.---..+|+    .++..++++++|||+|+
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la  223 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV  223 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence            33 33 345579999876533333443    99999999999999986

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.40  E-value=0.032  Score=48.60  Aligned_cols=84  Identities=19%  Similarity=0.135  Sum_probs=55.0

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCc------EEEccCCCCCC---------CCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPS------VIACDMSNTPL---------NSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~------~~~~d~~~lp~---------~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+|||. |.++..++    . +|+++|.++.+..      ....|.....+         ....||+|+-+..
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g  263 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVG  263 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence            4788999999986 66666555    4 7999998862111      11223322221         1226999997765


Q ss_pred             cc---------CCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LM---------GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~---------~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..         |.+++..+..+.++|+|||.+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~  297 (398)
T 2dph_A          264 FEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI  297 (398)
T ss_dssp             TTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred             CccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence            43         22345688999999999999874

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=95.33  E-value=0.0077  Score=51.81  Aligned_cols=70  Identities=16%  Similarity=0.152  Sum_probs=49.9

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC-----------CCCcEEEccCCCCC-----CC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-----------NDPSVIACDMSNTP-----LN  186 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-----------~~~~~~~~d~~~lp-----~~  186 (223)
                      ++.+++.|... ++..++|..||.|..+..++      .+|+|+|.++           .++.++.++..++.     ..
T Consensus        46 l~Evl~~L~i~-pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~g  124 (347)
T 3tka_A           46 LDEAVNGLNIR-PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERD  124 (347)
T ss_dssp             THHHHHHTCCC-TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHhhCCC-CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcC
Confidence            35667777654 78999999999999998876      4799999997           24556666665542     11


Q ss_pred             -CCceeEEEEcccc
Q 027441          187 -SSSVDVAVFCLSL  199 (223)
Q Consensus       187 -~~sfD~Vi~~~~l  199 (223)
                       .+++|.|++...+
T Consensus       125 ~~~~vDgILfDLGV  138 (347)
T 3tka_A          125 LIGKIDGILLDLGV  138 (347)
T ss_dssp             CTTCEEEEEEECSC
T ss_pred             CCCcccEEEECCcc
Confidence             1368888876654

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=94.83  E-value=0.034  Score=48.14  Aligned_cols=57  Identities=14%  Similarity=-0.006  Sum_probs=42.5

Q ss_pred             chHHHHHHHHhccC-----CCCeEEEECCcchHHHHHhc-----CceEEEecCC------------CCCcEEEccCCCC
Q 027441          127 LPVNIIVKWLKDHS-----PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSNT  183 (223)
Q Consensus       127 ~~~~~i~~~l~~~~-----~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------~~~~~~~~d~~~l  183 (223)
                      +..+.|.+.+....     ++..|||||.|.|.++..|.     .+|+++++.+            .++.++.+|+..+
T Consensus        39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW  117 (353)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred             HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence            34456666665432     35889999999999999887     3799999985            4677888888544

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=94.64  E-value=0.096  Score=44.83  Aligned_cols=90  Identities=12%  Similarity=0.193  Sum_probs=59.7

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---Cc--eEEEecCC-----------------------------------
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NK--VFSFDLVS-----------------------------------  170 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~--v~gvDis~-----------------------------------  170 (223)
                      .+.+++.. .+...|+.||||....+..|.   ..  ++-+|.-.                                   
T Consensus        88 ~v~~fl~~-~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~  166 (334)
T 1rjd_A           88 AILEFLVA-NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQ  166 (334)
T ss_dssp             HHHHHHHH-CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEEC
T ss_pred             HHHHHHHH-CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCC
Confidence            33444443 366899999999998777765   23  44555421                                   


Q ss_pred             CCCcEEEccCCCCC--------C-CCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEE
Q 027441          171 NDPSVIACDMSNTP--------L-NSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       171 ~~~~~~~~d~~~lp--------~-~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lv  222 (223)
                      .+..++.+|+.+..        . ......++++-.++++++++   .+|..+...+ |+|.++
T Consensus       167 ~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v  229 (334)
T 1rjd_A          167 GRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWI  229 (334)
T ss_dssp             SSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEE
T ss_pred             CceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEE
Confidence            23456778886632        1 33567999999999999665   6666666666 777664

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.08  E-value=0.035  Score=45.59  Aligned_cols=44  Identities=18%  Similarity=0.239  Sum_probs=32.0

Q ss_pred             CCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC
Q 027441          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS  170 (223)
Q Consensus       125 p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~  170 (223)
                      |...+..++....  .++..|||..||+|..+....   .+++|+|+++
T Consensus       198 p~~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~  244 (260)
T 1g60_A          198 PRDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNA  244 (260)
T ss_dssp             CHHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCH
T ss_pred             CHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCH
Confidence            3333444444432  378899999999999877665   6899999986

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.35  E-value=0.16  Score=43.58  Aligned_cols=79  Identities=15%  Similarity=0.249  Sum_probs=51.4

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCCC-------CCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTP-------LNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~lp-------~~~~sfD~Vi~~~~l  199 (223)
                      .++.+||-+|||. |.++..++    . .|+++|.++.+..+       ...|.....       +..+.||+|+.+...
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~  268 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS  268 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCC
Confidence            4678999999986 66665555    3 68999988632111       111221111       112369999866542


Q ss_pred             cCCCHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                           +..+..+.++|+|||.+++
T Consensus       269 -----~~~~~~~~~~l~~~G~iv~  287 (371)
T 1f8f_A          269 -----PEILKQGVDALGILGKIAV  287 (371)
T ss_dssp             -----HHHHHHHHHTEEEEEEEEE
T ss_pred             -----HHHHHHHHHHHhcCCEEEE
Confidence                 5678899999999999874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.15  E-value=0.15  Score=44.19  Aligned_cols=84  Identities=21%  Similarity=0.165  Sum_probs=54.3

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE------EEccCCCCC-C--------CCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV------IACDMSNTP-L--------NSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~------~~~d~~~lp-~--------~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+|||. |.++..++    . .|+++|.++.+..+      ...|..... +        ....+|+|+-+-.
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G  263 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  263 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence            4778999999876 66666555    3 68999988622111      112222111 0        1236999997654


Q ss_pred             c----------cCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 L----------MGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l----------~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .          ||.+++..+..+.++|++||.+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~  298 (398)
T 1kol_A          264 FEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI  298 (398)
T ss_dssp             TTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred             CcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence            2          333666789999999999999863

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=92.81  E-value=0.031  Score=46.88  Aligned_cols=52  Identities=19%  Similarity=0.214  Sum_probs=35.4

Q ss_pred             CCcEEEccCCC-C-CCCCCceeEEEEcccccCC---------------------CHHHHHHHHHHccCCCCEEEc
Q 027441          172 DPSVIACDMSN-T-PLNSSSVDVAVFCLSLMGI---------------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       172 ~~~~~~~d~~~-l-p~~~~sfD~Vi~~~~l~~~---------------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .+.++++|+.. + .+++++||+|++.--....                     ....++.++.|+|+|||.|+|
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i   95 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVI   95 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence            45567777654 2 2456789999887544311                     123578899999999999875

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=92.73  E-value=0.15  Score=42.16  Aligned_cols=35  Identities=17%  Similarity=0.101  Sum_probs=24.6

Q ss_pred             CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..||+|+.-.-. +.....+++.+...|+|||++++
T Consensus       181 ~~~dlv~ID~D~-Y~~t~~~le~~~p~l~~GGvIv~  215 (257)
T 3tos_A          181 TVIALAYFDLDL-YEPTKAVLEAIRPYLTKGSIVAF  215 (257)
T ss_dssp             CCEEEEEECCCC-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CceEEEEEcCcc-cchHHHHHHHHHHHhCCCcEEEE
Confidence            357777665532 11334678999999999999985

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=92.67  E-value=0.14  Score=43.48  Aligned_cols=76  Identities=13%  Similarity=0.162  Sum_probs=50.6

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCc--------EEEccCCCCCCCCCceeEEEEcccccCCCHHH
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPS--------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPN  206 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~--------~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~  206 (223)
                      .++.+||-+|+|. |.++..++    .+|+++|.++.+..        .+..+...  +. ..+|+|+-+..-     +.
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~--~~-~~~D~vid~~g~-----~~  246 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQ--CK-EELDFIISTIPT-----HY  246 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGG--CC-SCEEEEEECCCS-----CC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHH--Hh-cCCCEEEECCCc-----HH
Confidence            4788999999875 55555554    58999998874332        22222211  22 279999966542     23


Q ss_pred             HHHHHHHccCCCCEEEc
Q 027441          207 YLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       207 ~l~e~~rvLkpgG~lvi  223 (223)
                      .+..+.++|+|+|.+++
T Consensus       247 ~~~~~~~~l~~~G~iv~  263 (348)
T 3two_A          247 DLKDYLKLLTYNGDLAL  263 (348)
T ss_dssp             CHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCEEEE
Confidence            57788899999999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=92.66  E-value=0.26  Score=38.04  Aligned_cols=77  Identities=17%  Similarity=0.165  Sum_probs=48.8

Q ss_pred             CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCC--------CcEEEccCCCCC--------CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSND--------PSVIACDMSNTP--------LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~--------~~~~~~d~~~lp--------~~~~sfD~Vi~~~  197 (223)
                      .++.+||.+|++  .|..+..++    .+|+++|.++..        ... ..|..+..        .....+|+|+.+.
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~~~  115 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEY-VGDSRSVDFADEILELTDGYGVDVVLNSL  115 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSE-EEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE-EeeCCcHHHHHHHHHHhCCCCCeEEEECC
Confidence            367899999953  344443333    578899887521        111 22332211        1124699999765


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .      ...+..+.++|+|||.+++
T Consensus       116 g------~~~~~~~~~~l~~~G~~v~  135 (198)
T 1pqw_A          116 A------GEAIQRGVQILAPGGRFIE  135 (198)
T ss_dssp             C------THHHHHHHHTEEEEEEEEE
T ss_pred             c------hHHHHHHHHHhccCCEEEE
Confidence            4      3578889999999999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=92.58  E-value=0.07  Score=45.62  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCC-----CC-----CCCCCceeEEEEc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMS-----NT-----PLNSSSVDVAVFC  196 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~-----~l-----p~~~~sfD~Vi~~  196 (223)
                      .++.+||-+|+|. |.++..++    . +|+++|.++.+..+       ...|..     ++     ......||+|+.+
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~  249 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  249 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEEC
Confidence            4788999999875 66655554    3 79999988632111       111211     00     0001458999866


Q ss_pred             ccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...     +..+..+.++|+|||.+++
T Consensus       250 ~g~-----~~~~~~~~~~l~~~G~iv~  271 (356)
T 1pl8_A          250 TGA-----EASIQAGIYATRSGGTLVL  271 (356)
T ss_dssp             SCC-----HHHHHHHHHHSCTTCEEEE
T ss_pred             CCC-----hHHHHHHHHHhcCCCEEEE
Confidence            542     5678889999999999874

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=91.92  E-value=0.17  Score=38.62  Aligned_cols=82  Identities=13%  Similarity=0.137  Sum_probs=53.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCC-CCC----CCCceeEEEEcccccCC
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSN-TPL----NSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~-lp~----~~~sfD~Vi~~~~l~~~  202 (223)
                      ...-|||+|-|+|..=..|.     ..|+++|-.-        +.-.++.+|+.. +|.    -....-+|++-...+.-
T Consensus        40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~  119 (174)
T 3iht_A           40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATASLVHADLGGHNR  119 (174)
T ss_dssp             CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEEEEECCCCSCH
T ss_pred             CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCceEEEEeecCCCCc
Confidence            35679999999998555444     5788887652        455788888854 332    14556667766665543


Q ss_pred             CHH-----HHHHHHHHccCCCCEEE
Q 027441          203 NFP-----NYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       203 d~~-----~~l~e~~rvLkpgG~lv  222 (223)
                      +..     .+-.-+..+|.|||+++
T Consensus       120 ~~d~a~a~~lsplI~~~la~GGi~v  144 (174)
T 3iht_A          120 EKNDRFARLISPLIEPHLAQGGLMV  144 (174)
T ss_dssp             HHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             chhHHHHHhhhHHHHHHhcCCcEEE
Confidence            222     22234568999999986

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=91.75  E-value=0.065  Score=45.50  Aligned_cols=53  Identities=15%  Similarity=0.192  Sum_probs=37.5

Q ss_pred             CCCcEEEccCCC-CC-CCCCceeEEEEcccccCC---------------CHHHHHHHHHHccCCCCEEEc
Q 027441          171 NDPSVIACDMSN-TP-LNSSSVDVAVFCLSLMGI---------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 ~~~~~~~~d~~~-lp-~~~~sfD~Vi~~~~l~~~---------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ....++.+|... +. +++++||+|++.--....               ....+|.++.|+|+|||.++|
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i   82 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVV   82 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEE
Confidence            345667777643 33 567889999987443211               245889999999999999985

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=91.11  E-value=0.099  Score=44.24  Aligned_cols=79  Identities=14%  Similarity=0.191  Sum_probs=51.4

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCCC------CCCceeEEEEcccccC
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTPL------NSSSVDVAVFCLSLMG  201 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp~------~~~sfD~Vi~~~~l~~  201 (223)
                      .++.+||-+|+|. |.++..++    .+|+++|.++.+..+       ...|.....+      ..+.+|+|+.+..   
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g---  241 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV---  241 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC---
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC---
Confidence            4778999999975 66666665    589999988632211       1122222111      0136898886543   


Q ss_pred             CCHHHHHHHHHHccCCCCEEEc
Q 027441          202 INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                        -...+..+.++|+|+|.+++
T Consensus       242 --~~~~~~~~~~~l~~~G~iv~  261 (340)
T 3s2e_A          242 --SPKAFSQAIGMVRRGGTIAL  261 (340)
T ss_dssp             --CHHHHHHHHHHEEEEEEEEE
T ss_pred             --CHHHHHHHHHHhccCCEEEE
Confidence              16788899999999999874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=90.83  E-value=0.29  Score=41.98  Aligned_cols=79  Identities=20%  Similarity=0.254  Sum_probs=51.0

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCC----------CCCCCceeEEEEc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNT----------PLNSSSVDVAVFC  196 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~l----------p~~~~sfD~Vi~~  196 (223)
                      .++.+||=+|+|. |.++..++    . .|+++|.++.+..+       ...|....          .+..+.||+|+-+
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~  260 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIEC  260 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEEC
Confidence            4788999999875 55555554    3 78999988622111       11121111          1223479999965


Q ss_pred             ccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...     ...+..+.++|++||.+++
T Consensus       261 ~G~-----~~~~~~~~~~l~~~G~vv~  282 (370)
T 4ej6_A          261 AGV-----AETVKQSTRLAKAGGTVVI  282 (370)
T ss_dssp             SCC-----HHHHHHHHHHEEEEEEEEE
T ss_pred             CCC-----HHHHHHHHHHhccCCEEEE
Confidence            442     5678899999999999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=90.63  E-value=0.68  Score=39.01  Aligned_cols=78  Identities=18%  Similarity=0.218  Sum_probs=49.3

Q ss_pred             CCCCeEEEECCcc--hHHHHHhc----CceEEEecCCCCCcEE-------EccCCCCC--------CCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGD--ARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSNTP--------LNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~--G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~lp--------~~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+|+|.  |..+..++    .+|+++|.++....+.       ..|.....        .....||+|+.+..
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g  222 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIG  222 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCC
Confidence            4778999999985  44544444    5899999887443221       12222211        11246999997765


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                            ...+.+..++|+|||.+++
T Consensus       223 ------~~~~~~~~~~l~~~G~iv~  241 (340)
T 3gms_A          223 ------GPDGNELAFSLRPNGHFLT  241 (340)
T ss_dssp             ------HHHHHHHHHTEEEEEEEEE
T ss_pred             ------ChhHHHHHHHhcCCCEEEE
Confidence                  2333455589999999874

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=90.42  E-value=1.6  Score=36.75  Aligned_cols=81  Identities=12%  Similarity=0.071  Sum_probs=56.0

Q ss_pred             CeEEEECCcchHHHHHhc----CceEEEecCC-----------------CCCcEEEccCCCC--------CCCCCceeEE
Q 027441          143 LVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNT--------PLNSSSVDVA  193 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------------~~~~~~~~d~~~l--------p~~~~sfD~V  193 (223)
                      ..|++||||-=..+..+.    ..|+-+|.-.                 .+..++.+|+.+-        .|....--++
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~~  183 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTAW  183 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEEE
Confidence            569999999776666665    2466666321                 2345677888651        1223445788


Q ss_pred             EEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..+++|++.   ..+|..+...+.||+.|++
T Consensus       184 i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~  216 (310)
T 2uyo_A          184 LAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV  216 (310)
T ss_dssp             EECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             EEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            89999999944   3788888888889998874

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=90.07  E-value=0.25  Score=42.91  Aligned_cols=55  Identities=15%  Similarity=0.088  Sum_probs=41.5

Q ss_pred             CeEEEECCcchHHHHHhc----CceEEEecCC----------CCCcEEEccCCCCCC--------CCCceeEEEEcc
Q 027441          143 LVIADFGCGDARLAKSVK----NKVFSFDLVS----------NDPSVIACDMSNTPL--------NSSSVDVAVFCL  197 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la----~~v~gvDis~----------~~~~~~~~d~~~lp~--------~~~sfD~Vi~~~  197 (223)
                      .++||+-||.|.++..+.    ..|.++|+++          ....++.+|+..+..        ....+|+|+...
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggp   79 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGP   79 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecC
Confidence            579999999999888775    3577999987          355677888877631        345799999653

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=89.58  E-value=0.31  Score=41.75  Aligned_cols=79  Identities=18%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCC--CCC-------CCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSN--TPL-------NSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~--lp~-------~~~sfD~Vi~~~  197 (223)
                      .++.+||-+|+|. |.++..++    . +|+++|.++.+..+       ...|..+  ..+       ..+.+|+|+.+.
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~  270 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECV  270 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECC
Confidence            4678999999875 55555554    3 79999988743221       1112211  000       123689998665


Q ss_pred             cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPR-GEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi  223 (223)
                      ..     +..+..+.++|+|| |.+++
T Consensus       271 g~-----~~~~~~~~~~l~~~~G~iv~  292 (374)
T 1cdo_A          271 GN-----VGVMRNALESCLKGWGVSVL  292 (374)
T ss_dssp             CC-----HHHHHHHHHTBCTTTCEEEE
T ss_pred             CC-----HHHHHHHHHHhhcCCcEEEE
Confidence            42     56788999999999 99874

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=89.54  E-value=0.31  Score=40.62  Aligned_cols=74  Identities=12%  Similarity=0.016  Sum_probs=45.8

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcE--------EEccCCCCCCCCCceeEEEEcccccCCCHHH
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV--------IACDMSNTPLNSSSVDVAVFCLSLMGINFPN  206 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~--------~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~  206 (223)
                      .++.+||=+|+|. |.++..++    .+|++++ ++.+..+        +.-|...+   ...||+|+-+..-      .
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v---~~g~Dvv~d~~g~------~  210 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQV---TQKYFAIFDAVNS------Q  210 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGC---CSCEEEEECC----------
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHh---CCCccEEEECCCc------h
Confidence            4788999999964 55555554    5899999 7744321        12122222   4679999865542      2


Q ss_pred             HHHHHHHccCCCCEEEc
Q 027441          207 YLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       207 ~l~e~~rvLkpgG~lvi  223 (223)
                      .+..+.++|+|+|.+++
T Consensus       211 ~~~~~~~~l~~~G~~v~  227 (315)
T 3goh_A          211 NAAALVPSLKANGHIIC  227 (315)
T ss_dssp             ---TTGGGEEEEEEEEE
T ss_pred             hHHHHHHHhcCCCEEEE
Confidence            23567899999999863

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=89.48  E-value=0.22  Score=42.37  Aligned_cols=79  Identities=9%  Similarity=0.075  Sum_probs=50.0

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcE-------EEccCCC-CCC--------C---CCceeEEEE
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSN-TPL--------N---SSSVDVAVF  195 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~-lp~--------~---~~sfD~Vi~  195 (223)
                      .++.+||-+|+|. |.++..++    .+|+++|.++.+..+       ...|..+ ..+        .   ...+|+|+.
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid  246 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  246 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEE
Confidence            4778999999875 55555554    469999987622111       1122221 111        0   245899986


Q ss_pred             cccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +...     ...+..+.++|+|+|.+++
T Consensus       247 ~~g~-----~~~~~~~~~~l~~~G~iv~  269 (352)
T 1e3j_A          247 CSGN-----EKCITIGINITRTGGTLML  269 (352)
T ss_dssp             CSCC-----HHHHHHHHHHSCTTCEEEE
T ss_pred             CCCC-----HHHHHHHHHHHhcCCEEEE
Confidence            6542     4578889999999999874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=89.40  E-value=0.49  Score=40.10  Aligned_cols=79  Identities=13%  Similarity=0.139  Sum_probs=50.4

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~  198 (223)
                      .++.+||=+|+|. |.++..++    . +|+++|.++.+..+       ...|.....        .....||+|+-+..
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g  244 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGG  244 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence            4778899999875 55555555    3 79999987632111       111111111        11236999996554


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .     +..+..+.++|+|||.+++
T Consensus       245 ~-----~~~~~~~~~~l~~~G~~v~  264 (352)
T 3fpc_A          245 D-----VHTFAQAVKMIKPGSDIGN  264 (352)
T ss_dssp             C-----TTHHHHHHHHEEEEEEEEE
T ss_pred             C-----hHHHHHHHHHHhcCCEEEE
Confidence            2     3578889999999999873

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=89.27  E-value=0.17  Score=42.68  Aligned_cols=78  Identities=12%  Similarity=0.035  Sum_probs=50.5

Q ss_pred             CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCcE--------EEccCCCCC-------CCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPSV--------IACDMSNTP-------LNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~~--------~~~d~~~lp-------~~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+||+  .|..+..++    .+|+++|.++.....        ...|.....       ...+.+|+|+.+..
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  227 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG  227 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence            478899999983  455554444    589999987622211        112222211       11246999997766


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                            ...+..+.++|++||.+++
T Consensus       228 ------~~~~~~~~~~l~~~G~iv~  246 (336)
T 4b7c_A          228 ------GEILDTVLTRIAFKARIVL  246 (336)
T ss_dssp             ------HHHHHHHHTTEEEEEEEEE
T ss_pred             ------cchHHHHHHHHhhCCEEEE
Confidence                  3578899999999999874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=89.01  E-value=0.39  Score=40.33  Aligned_cols=78  Identities=10%  Similarity=0.042  Sum_probs=49.4

Q ss_pred             CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCc-------EEEccCCC-CC-------CCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPS-------VIACDMSN-TP-------LNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~-------~~~~d~~~-lp-------~~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+||+  .|..+..++    .+|+++|.++....       ....|..+ ..       ...+.+|+|+.+..
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  223 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  223 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            467899999984  444444433    57899988752111       11234332 11       01246999998776


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                            ...+..+.++|+|||.+++
T Consensus       224 ------~~~~~~~~~~l~~~G~~v~  242 (333)
T 1v3u_A          224 ------GEFLNTVLSQMKDFGKIAI  242 (333)
T ss_dssp             ------HHHHHHHHTTEEEEEEEEE
T ss_pred             ------hHHHHHHHHHHhcCCEEEE
Confidence                  3458888999999999863

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=88.83  E-value=0.41  Score=41.08  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=51.0

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcEE-------EccCC--CCC-------CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSVI-------ACDMS--NTP-------LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~~-------~~d~~--~lp-------~~~~sfD~Vi~~~  197 (223)
                      .++.+||=+|+|. |.++..++    . +|+++|.++.+..+.       ..|..  ...       +..+.||+|+-+.
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~  271 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECI  271 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECC
Confidence            4678899999974 55555554    3 799999887432211       11211  110       1123699998665


Q ss_pred             cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPR-GEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi  223 (223)
                      ..     +..+..+.++|++| |.+++
T Consensus       272 g~-----~~~~~~~~~~l~~g~G~iv~  293 (378)
T 3uko_A          272 GN-----VSVMRAALECCHKGWGTSVI  293 (378)
T ss_dssp             CC-----HHHHHHHHHTBCTTTCEEEE
T ss_pred             CC-----HHHHHHHHHHhhccCCEEEE
Confidence            42     57889999999997 98874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=88.79  E-value=0.37  Score=41.21  Aligned_cols=79  Identities=16%  Similarity=0.130  Sum_probs=50.6

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcEE-------EccCCC----C-----CCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSVI-------ACDMSN----T-----PLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~~-------~~d~~~----l-----p~~~~sfD~Vi~~~  197 (223)
                      .++.+||-+|+|. |.++..++    . +|+++|.++.+..+.       ..|..+    +     .+..+.||+|+-+.
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~  269 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECA  269 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence            4678999999875 55555554    3 799999887332211       112111    1     01123699998665


Q ss_pred             cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPR-GEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi  223 (223)
                      ..     +..+..+.++|+++ |.+++
T Consensus       270 g~-----~~~~~~~~~~l~~~~G~iv~  291 (373)
T 1p0f_A          270 GR-----IETMMNALQSTYCGSGVTVV  291 (373)
T ss_dssp             CC-----HHHHHHHHHTBCTTTCEEEE
T ss_pred             CC-----HHHHHHHHHHHhcCCCEEEE
Confidence            42     56788999999999 99873

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=88.50  E-value=0.37  Score=40.29  Aligned_cols=92  Identities=9%  Similarity=-0.026  Sum_probs=63.8

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCC-C---CCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSN-T---PLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~-l---p~~~~sf  190 (223)
                      .+++.+... .+..+||+=+|+|.++..+.   .+++.+|.++             .++.++..|... +   .-+...|
T Consensus        82 ~yf~~l~~~-n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~f  160 (283)
T 2oo3_A           82 EYISVIKQI-NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKR  160 (283)
T ss_dssp             HHHHHHHHH-SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSC
T ss_pred             HHHHHHHHh-cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCc
Confidence            455555554 45678999999999999887   4789999986             235566666422 1   1123569


Q ss_pred             eEEEEcccccC-CCHHHHHHHHHH--ccCCCCEEEc
Q 027441          191 DVAVFCLSLMG-INFPNYLQEAQR--VLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~-~d~~~~l~e~~r--vLkpgG~lvi  223 (223)
                      |+|++-=.++. -++..++..+..  .+-|+|+++|
T Consensus       161 dLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          161 GLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             EEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             cEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            99998887774 366677766665  4568998875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=88.49  E-value=0.39  Score=41.12  Aligned_cols=79  Identities=13%  Similarity=0.141  Sum_probs=50.4

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcEE-------EccCCC----C-----CCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSVI-------ACDMSN----T-----PLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~~-------~~d~~~----l-----p~~~~sfD~Vi~~~  197 (223)
                      .++.+||-+|+|. |.++..++    . +|+++|.++.+..+.       ..|..+    +     .+..+.+|+|+.+.
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~  269 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVI  269 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECC
Confidence            4678999999875 55555554    3 799999887432211       112211    1     01123699998665


Q ss_pred             cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPR-GEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi  223 (223)
                      ..     +..+..+.++|+++ |.+++
T Consensus       270 g~-----~~~~~~~~~~l~~~~G~iv~  291 (374)
T 2jhf_A          270 GR-----LDTMVTALSCCQEAYGVSVI  291 (374)
T ss_dssp             CC-----HHHHHHHHHHBCTTTCEEEE
T ss_pred             CC-----HHHHHHHHHHhhcCCcEEEE
Confidence            42     56788999999999 99873

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=88.45  E-value=0.38  Score=41.12  Aligned_cols=79  Identities=16%  Similarity=0.260  Sum_probs=50.5

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcEE-------EccCCC--CC-------CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSVI-------ACDMSN--TP-------LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~~-------~~d~~~--lp-------~~~~sfD~Vi~~~  197 (223)
                      .++.+||-+|+|. |.++..++    . .|+++|.++.+..+.       ..|..+  ..       +..+.+|+|+.+.
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~  268 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI  268 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECC
Confidence            4678999999875 55555554    4 799999887432211       112111  00       1123699998665


Q ss_pred             cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPR-GEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi  223 (223)
                      ..     ...+..+.++|+|+ |.+++
T Consensus       269 g~-----~~~~~~~~~~l~~~~G~iv~  290 (373)
T 2fzw_A          269 GN-----VKVMRAALEACHKGWGVSVV  290 (373)
T ss_dssp             CC-----HHHHHHHHHTBCTTTCEEEE
T ss_pred             Cc-----HHHHHHHHHhhccCCcEEEE
Confidence            42     56788999999999 99874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=88.38  E-value=0.39  Score=40.98  Aligned_cols=78  Identities=10%  Similarity=0.068  Sum_probs=49.2

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcE-------EEccC--CCCC------CCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDM--SNTP------LNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~-------~~~d~--~~lp------~~~~sfD~Vi~~~~l  199 (223)
                      .++.+||-+|+|. |.++..++    .+|+++|.++.+..+       ...|-  .++.      .....+|+|+.+.. 
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-  266 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-  266 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            4778999999875 55555554    589999987622111       11121  1110      11236999997665 


Q ss_pred             cCCCHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                           ...+..+.++|+|||.+++
T Consensus       267 -----~~~~~~~~~~l~~~G~iv~  285 (363)
T 3uog_A          267 -----GAGLGQSLKAVAPDGRISV  285 (363)
T ss_dssp             -----SSCHHHHHHHEEEEEEEEE
T ss_pred             -----hHHHHHHHHHhhcCCEEEE
Confidence                 2356778889999999874

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=88.26  E-value=0.2  Score=42.91  Aligned_cols=56  Identities=14%  Similarity=0.249  Sum_probs=41.0

Q ss_pred             CeEEEECCcchHHHHHhc--C----ceEEEecCC----------CCCcEEEccCCCCCC---CCCceeEEEEccc
Q 027441          143 LVIADFGCGDARLAKSVK--N----KVFSFDLVS----------NDPSVIACDMSNTPL---NSSSVDVAVFCLS  198 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la--~----~v~gvDis~----------~~~~~~~~d~~~lp~---~~~sfD~Vi~~~~  198 (223)
                      .+|||+-||.|.++..+.  +    .|+++|+++          ....++.+|+..+..   +...+|+|+...-
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP   77 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPP   77 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence            579999999999887775  3    588999987          344567888877642   1125899997643

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=88.23  E-value=0.43  Score=40.88  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=50.4

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcEE-------EccCCC--CC-------CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSVI-------ACDMSN--TP-------LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~~-------~~d~~~--lp-------~~~~sfD~Vi~~~  197 (223)
                      .++.+||-+|+|. |.++..++    . +|+++|.++.+..+.       ..|..+  ..       +..+.+|+|+-+.
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~  273 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA  273 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECC
Confidence            4678999999874 55555554    3 799999887432211       112111  00       0123689998665


Q ss_pred             cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPR-GEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi  223 (223)
                      ..     +..+..+.++|++| |.+++
T Consensus       274 G~-----~~~~~~~~~~l~~~~G~iv~  295 (376)
T 1e3i_A          274 GT-----AQTLKAAVDCTVLGWGSCTV  295 (376)
T ss_dssp             CC-----HHHHHHHHHTBCTTTCEEEE
T ss_pred             CC-----HHHHHHHHHHhhcCCCEEEE
Confidence            42     56788999999999 99874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=87.82  E-value=0.26  Score=41.70  Aligned_cols=80  Identities=15%  Similarity=0.239  Sum_probs=50.9

Q ss_pred             cCCCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCcEE-------EccCCC-CC-----C-CCCceeEEEEccc
Q 027441          139 HSPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSVI-------ACDMSN-TP-----L-NSSSVDVAVFCLS  198 (223)
Q Consensus       139 ~~~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~~~-------~~d~~~-lp-----~-~~~sfD~Vi~~~~  198 (223)
                      ..++.+||-+|+|. |.++..++     .+|+++|.++.+..+.       ..|... +.     + ....+|+|+-+-.
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G  248 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVG  248 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCC
Confidence            34788999999975 55555444     5799999887322110       111111 00     0 1236999986654


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -     +..+..+.++|+|||.+++
T Consensus       249 ~-----~~~~~~~~~~l~~~G~iv~  268 (345)
T 3jv7_A          249 A-----QSTIDTAQQVVAVDGHISV  268 (345)
T ss_dssp             C-----HHHHHHHHHHEEEEEEEEE
T ss_pred             C-----HHHHHHHHHHHhcCCEEEE
Confidence            2     5588999999999999874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=87.78  E-value=0.29  Score=41.45  Aligned_cols=78  Identities=18%  Similarity=0.151  Sum_probs=49.5

Q ss_pred             CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE------EEccCCCCCC-------CCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV------IACDMSNTPL-------NSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~------~~~d~~~lp~-------~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+||-+|+|. |.++..++    . +|+++|.++....+      ...|.....+       ....+|+|+.+...  
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~--  241 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGN--  241 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCC--
Confidence            678999999864 45555444    4 89999987632211      1122221110       02359999866542  


Q ss_pred             CCHHHHHHHHHHccCCCCEEEc
Q 027441          202 INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         +..+..+.++|+++|.+++
T Consensus       242 ---~~~~~~~~~~l~~~G~iv~  260 (343)
T 2dq4_A          242 ---EAAIHQGLMALIPGGEARI  260 (343)
T ss_dssp             ---HHHHHHHHHHEEEEEEEEE
T ss_pred             ---HHHHHHHHHHHhcCCEEEE
Confidence               4678889999999999873

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=87.13  E-value=0.34  Score=41.07  Aligned_cols=79  Identities=11%  Similarity=0.138  Sum_probs=50.5

Q ss_pred             CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCcE-------EEccCCC-CCC-------CCCceeEEEEccc
Q 027441          140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSN-TPL-------NSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~-lp~-------~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+|++  .|..+..++    .+|+++|.++.....       ...|..+ ..+       ..+.+|+|+.+..
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g  247 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSV  247 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCC
Confidence            467899999983  455444443    579999987632211       1224331 110       0126999987765


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .     ...+..+.++|+++|.+++
T Consensus       248 ~-----~~~~~~~~~~l~~~G~iv~  267 (347)
T 2hcy_A          248 S-----EAAIEASTRYVRANGTTVL  267 (347)
T ss_dssp             C-----HHHHHHHTTSEEEEEEEEE
T ss_pred             c-----HHHHHHHHHHHhcCCEEEE
Confidence            2     4678899999999999873

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=86.89  E-value=0.84  Score=38.46  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=50.2

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCCCC------CCceeEEEEcccccC
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTPLN------SSSVDVAVFCLSLMG  201 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp~~------~~sfD~Vi~~~~l~~  201 (223)
                      .++.+||-+|+|. |..+..++    .+|+++|.++....+       ...|..+..+.      ...+|+|+.+...  
T Consensus       163 ~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~--  240 (339)
T 1rjw_A          163 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS--  240 (339)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC--
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCC--
Confidence            4778999999964 55554444    589999987622111       11233221110      0369999876552  


Q ss_pred             CCHHHHHHHHHHccCCCCEEEc
Q 027441          202 INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         ...+..+.++|+++|.+++
T Consensus       241 ---~~~~~~~~~~l~~~G~~v~  259 (339)
T 1rjw_A          241 ---KPAFQSAYNSIRRGGACVL  259 (339)
T ss_dssp             ---HHHHHHHHHHEEEEEEEEE
T ss_pred             ---HHHHHHHHHHhhcCCEEEE
Confidence               4678889999999999873

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.76  E-value=0.28  Score=42.17  Aligned_cols=78  Identities=17%  Similarity=0.277  Sum_probs=49.5

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcEE-------EccCCCC----CCCCCceeEEEEcccccCCC
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSNT----PLNSSSVDVAVFCLSLMGIN  203 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~l----p~~~~sfD~Vi~~~~l~~~d  203 (223)
                      .++.+||-+|+|. |.++..++    .+|+++|.++.+..+.       ..|....    .+. ..||+|+.+...    
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~-~g~Dvvid~~g~----  267 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHL-KSFDFILNTVAA----  267 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTT-TCEEEEEECCSS----
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhh-cCCCEEEECCCC----
Confidence            4778999999975 55555554    5799999887432211       1121110    011 469999976552    


Q ss_pred             HHHHHHHHHHccCCCCEEEc
Q 027441          204 FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~lvi  223 (223)
                       +..+..+.++|+|+|.+++
T Consensus       268 -~~~~~~~~~~l~~~G~iv~  286 (369)
T 1uuf_A          268 -PHNLDDFTTLLKRDGTMTL  286 (369)
T ss_dssp             -CCCHHHHHTTEEEEEEEEE
T ss_pred             -HHHHHHHHHHhccCCEEEE
Confidence             2346778899999999863

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=86.18  E-value=1.4  Score=37.13  Aligned_cols=78  Identities=15%  Similarity=0.191  Sum_probs=49.8

Q ss_pred             CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCCCC--------CCCceeEEEEcccc
Q 027441          141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTPL--------NSSSVDVAVFCLSL  199 (223)
Q Consensus       141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~lp~--------~~~sfD~Vi~~~~l  199 (223)
                      ++.+||-+|+|. |.++..++    . +|+++|.++....+       ...|.....+        ....+|+|+.+...
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            678899999964 55554444    4 89999988632111       1122221110        12369999976552


Q ss_pred             cCCCHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                           +..+..+.++|+++|.+++
T Consensus       247 -----~~~~~~~~~~l~~~G~iv~  265 (348)
T 2d8a_A          247 -----PKALEQGLQAVTPAGRVSL  265 (348)
T ss_dssp             -----HHHHHHHHHHEEEEEEEEE
T ss_pred             -----HHHHHHHHHHHhcCCEEEE
Confidence                 5678889999999999873

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=85.90  E-value=2.6  Score=35.68  Aligned_cols=79  Identities=11%  Similarity=0.097  Sum_probs=49.7

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcEE----------EccCC---CC------CCCCCceeEEE
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSVI----------ACDMS---NT------PLNSSSVDVAV  194 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~~----------~~d~~---~l------p~~~~sfD~Vi  194 (223)
                      .++.+||=+|+|. |.++..++    . .|+++|.++.+..+.          ..+..   ++      -.....+|+|+
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvi  257 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVAL  257 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEE
Confidence            4778899999875 55555555    3 489999886322111          11100   00      01134689998


Q ss_pred             EcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -+...     +..+..+.++|++||.+++
T Consensus       258 d~~g~-----~~~~~~~~~~l~~~G~iv~  281 (363)
T 3m6i_A          258 ECTGV-----ESSIAAAIWAVKFGGKVFV  281 (363)
T ss_dssp             ECSCC-----HHHHHHHHHHSCTTCEEEE
T ss_pred             ECCCC-----hHHHHHHHHHhcCCCEEEE
Confidence            66542     4578899999999999874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=85.62  E-value=0.69  Score=42.93  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=26.6

Q ss_pred             CCceeEEEEcccccCCCH----HHHHHHHHHccCCCCEEE
Q 027441          187 SSSVDVAVFCLSLMGINF----PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~d~----~~~l~e~~rvLkpgG~lv  222 (223)
                      ...||+|+.-...-..++    ..++..+.++++|||.|.
T Consensus       177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~  216 (676)
T 3ps9_A          177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA  216 (676)
T ss_dssp             TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEE
T ss_pred             CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEE
Confidence            367999987553333333    389999999999999985

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=85.31  E-value=0.53  Score=43.89  Aligned_cols=36  Identities=17%  Similarity=0.115  Sum_probs=25.9

Q ss_pred             CCceeEEEEcccccCCCH----HHHHHHHHHccCCCCEEE
Q 027441          187 SSSVDVAVFCLSLMGINF----PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~d~----~~~l~e~~rvLkpgG~lv  222 (223)
                      +..||+++.-...-..++    ..++..+.++++|||.+.
T Consensus       169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~  208 (689)
T 3pvc_A          169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFS  208 (689)
T ss_dssp             TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred             CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEE
Confidence            467999987553322232    489999999999999875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=85.29  E-value=1.2  Score=37.60  Aligned_cols=78  Identities=14%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCcEE-------EccCC-CCC------CCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMS-NTP------LNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~-~lp------~~~~sfD~Vi~~~~l  199 (223)
                      .++.+||-+|++  .|..+..++    .+|++++.++....+.       ..|.. ++.      .....+|+|+.+...
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~  237 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG  237 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC-
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch
Confidence            467899999983  355555554    5899999876322111       11211 110      112369999977662


Q ss_pred             cCCCHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                            ..+..+.++|++||.+++
T Consensus       238 ------~~~~~~~~~l~~~G~iv~  255 (342)
T 4eye_A          238 ------PAFDDAVRTLASEGRLLV  255 (342)
T ss_dssp             -------CHHHHHHTEEEEEEEEE
T ss_pred             ------hHHHHHHHhhcCCCEEEE
Confidence                  357788899999999874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=85.25  E-value=1.2  Score=37.46  Aligned_cols=78  Identities=9%  Similarity=0.009  Sum_probs=49.7

Q ss_pred             CCCCeEEEECC--cchHHHHHhc----CceEEEecCCCCCc--------EEEccCCCC-CC-------CCCceeEEEEcc
Q 027441          140 SPSLVIADFGC--GDARLAKSVK----NKVFSFDLVSNDPS--------VIACDMSNT-PL-------NSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGc--G~G~~a~~la----~~v~gvDis~~~~~--------~~~~d~~~l-p~-------~~~sfD~Vi~~~  197 (223)
                      .++.+||-+||  |.|..+..++    .+|+++|.++....        ....|..+. .+       ....+|+|+.+.
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~  233 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENV  233 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECC
Confidence            46789999998  3455544444    57899988752111        112233221 11       124699999776


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .      ...+..+.++|+|||.+++
T Consensus       234 g------~~~~~~~~~~l~~~G~~v~  253 (345)
T 2j3h_A          234 G------GKMLDAVLVNMNMHGRIAV  253 (345)
T ss_dssp             C------HHHHHHHHTTEEEEEEEEE
T ss_pred             C------HHHHHHHHHHHhcCCEEEE
Confidence            5      3478889999999999864

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=85.09  E-value=0.59  Score=40.92  Aligned_cols=31  Identities=16%  Similarity=0.155  Sum_probs=26.6

Q ss_pred             CCCCeEEEECCcchHHHHHhc-------CceEEEecCC
Q 027441          140 SPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS  170 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~  170 (223)
                      .++..|+||||+.|.++..++       .+|+++++++
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p  262 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDR  262 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence            477899999999999887654       4799999997

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=84.39  E-value=3.4  Score=34.92  Aligned_cols=75  Identities=17%  Similarity=0.281  Sum_probs=48.6

Q ss_pred             CeEEEECCcc-hHHH-HHhc-----Cc-eEEEecCCC---CCcEE-------EccCCCCCCC-----CCceeEEEEcccc
Q 027441          143 LVIADFGCGD-ARLA-KSVK-----NK-VFSFDLVSN---DPSVI-------ACDMSNTPLN-----SSSVDVAVFCLSL  199 (223)
Q Consensus       143 ~~ILDiGcG~-G~~a-~~la-----~~-v~gvDis~~---~~~~~-------~~d~~~lp~~-----~~sfD~Vi~~~~l  199 (223)
                      .+||-+|+|. |.++ ..++     .+ |+++|.++.   +..+.       + |.....+.     .+.||+|+-+...
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~i~~~~gg~Dvvid~~g~  252 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQTPVEDVPDVYEQMDFIYEATGF  252 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTTSCGGGHHHHSCCEEEEEECSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCccCHHHHHHhCCCCCEEEECCCC
Confidence            8999999864 5555 4444     34 999998775   33221       1 33221111     1369999865542


Q ss_pred             cCCCHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                           +..+..+.++|+|+|.+++
T Consensus       253 -----~~~~~~~~~~l~~~G~iv~  271 (357)
T 2b5w_A          253 -----PKHAIQSVQALAPNGVGAL  271 (357)
T ss_dssp             -----HHHHHHHHHHEEEEEEEEE
T ss_pred             -----hHHHHHHHHHHhcCCEEEE
Confidence                 4578899999999999873

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=84.10  E-value=1.6  Score=36.93  Aligned_cols=78  Identities=10%  Similarity=0.104  Sum_probs=49.0

Q ss_pred             CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCCC--------CCCceeEEEEccc
Q 027441          140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTPL--------NSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp~--------~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+|++  .|..+..++    .+|+++|.++....+       ...|..+..+        ....+|+|+.+..
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G  248 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA  248 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCC
Confidence            467899999973  344444443    578999887521110       1223322111        1236999997766


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                            ...+..+.++|+|+|.+++
T Consensus       249 ------~~~~~~~~~~l~~~G~iv~  267 (351)
T 1yb5_A          249 ------NVNLSKDLSLLSHGGRVIV  267 (351)
T ss_dssp             ------HHHHHHHHHHEEEEEEEEE
T ss_pred             ------hHHHHHHHHhccCCCEEEE
Confidence                  3467788999999999874

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=83.95  E-value=0.3  Score=42.06  Aligned_cols=79  Identities=11%  Similarity=0.118  Sum_probs=49.1

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCcE-------EEccCC---CCC-------C-CCCceeEEEE
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSV-------IACDMS---NTP-------L-NSSSVDVAVF  195 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~~-------~~~d~~---~lp-------~-~~~sfD~Vi~  195 (223)
                      .++.+||-+|+|. |.++..++     .+|+++|.++....+       ...|..   ...       + ....+|+|+-
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid  273 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE  273 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEE
Confidence            3678999999764 55555444     389999987622111       011211   000       1 1236999996


Q ss_pred             cccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +...     +..+..+.++|+|+|.+++
T Consensus       274 ~~g~-----~~~~~~~~~~l~~~G~iv~  296 (380)
T 1vj0_A          274 ATGD-----SRALLEGSELLRRGGFYSV  296 (380)
T ss_dssp             CSSC-----TTHHHHHHHHEEEEEEEEE
T ss_pred             CCCC-----HHHHHHHHHHHhcCCEEEE
Confidence            6542     3467888999999999873

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=83.65  E-value=0.76  Score=34.09  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=30.6

Q ss_pred             CCCCCCceeEEEEccccc-C-C-CHHHHHHHHHHccCCCCEEE
Q 027441          183 TPLNSSSVDVAVFCLSLM-G-I-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       183 lp~~~~sfD~Vi~~~~l~-~-~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                      ..+++.+||.|+...--. . . -+..++..+.+.|+|||.|.
T Consensus        53 VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~   95 (136)
T 2km1_A           53 ITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLI   95 (136)
T ss_dssp             CCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEE
T ss_pred             ccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEE
Confidence            345688999998655443 2 3 34799999999999999985

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=83.48  E-value=1.2  Score=37.88  Aligned_cols=78  Identities=14%  Similarity=0.115  Sum_probs=48.8

Q ss_pred             CCCeEEEEC-Ccc-hHHHHHhc-----CceEEEecCCCCCcE-------EEccCCC-C-----CCCCCceeEEEEccccc
Q 027441          141 PSLVIADFG-CGD-ARLAKSVK-----NKVFSFDLVSNDPSV-------IACDMSN-T-----PLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiG-cG~-G~~a~~la-----~~v~gvDis~~~~~~-------~~~d~~~-l-----p~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+||=+| +|. |.++..++     .+|+++|.++.+..+       .+.|... +     .+....+|+|+.+..  
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g--  248 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH--  248 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCC--
Confidence            567899998 553 55544443     579999987622111       0111111 0     112357999987654  


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         -+..+..+.++|+|+|.+++
T Consensus       249 ---~~~~~~~~~~~l~~~G~iv~  268 (363)
T 4dvj_A          249 ---TDKHAAEIADLIAPQGRFCL  268 (363)
T ss_dssp             ---HHHHHHHHHHHSCTTCEEEE
T ss_pred             ---chhhHHHHHHHhcCCCEEEE
Confidence               25688999999999999874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=83.21  E-value=0.19  Score=42.93  Aligned_cols=80  Identities=13%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcEE-------EccCCCC-C----CCCCceeEEEEcccccCC
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSNT-P----LNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~l-p----~~~~sfD~Vi~~~~l~~~  202 (223)
                      .++.+||-+|+|. |.++..++    .+|+++|.++.+..+.       ..|.... .    +. +.||+|+.+..... 
T Consensus       178 ~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~-~~~D~vid~~g~~~-  255 (360)
T 1piw_A          178 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYF-DTFDLIVVCASSLT-  255 (360)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSC-SCEEEEEECCSCST-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhh-cCCCEEEECCCCCc-
Confidence            4778999999864 55555444    5799999887543221       1121111 0    11 46999997655300 


Q ss_pred             CHHHHHHHHHHccCCCCEEEc
Q 027441          203 NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 d~~~~l~e~~rvLkpgG~lvi  223 (223)
                        +..+..+.++|+|||.+++
T Consensus       256 --~~~~~~~~~~l~~~G~iv~  274 (360)
T 1piw_A          256 --DIDFNIMPKAMKVGGRIVS  274 (360)
T ss_dssp             --TCCTTTGGGGEEEEEEEEE
T ss_pred             --HHHHHHHHHHhcCCCEEEE
Confidence              1235567789999999863

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=83.21  E-value=1.4  Score=36.82  Aligned_cols=78  Identities=15%  Similarity=0.092  Sum_probs=49.1

Q ss_pred             CCCCeEEEECC-c-chHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEccc
Q 027441          140 SPSLVIADFGC-G-DARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGc-G-~G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+|+ | .|..+..++    .+|+++|.++.+..+       ...|.....        .....+|+|+.+..
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g  218 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVG  218 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCC
Confidence            46789999993 3 355555444    589999987622111       112222211        12246999997766


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .      ..+..+.++|+|||.+++
T Consensus       219 ~------~~~~~~~~~l~~~G~iv~  237 (325)
T 3jyn_A          219 Q------DTWLTSLDSVAPRGLVVS  237 (325)
T ss_dssp             G------GGHHHHHTTEEEEEEEEE
T ss_pred             h------HHHHHHHHHhcCCCEEEE
Confidence            2      467788999999999874

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=82.61  E-value=1.5  Score=36.76  Aligned_cols=78  Identities=10%  Similarity=0.078  Sum_probs=48.7

Q ss_pred             CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+|++  .|..+..++    .+|+++|.++.+..+       ...|.....        .....+|+|+.+..
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g  226 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVG  226 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCC
Confidence            477899999953  344444444    589999987622111       112222111        11346999997766


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -      ..+..+.++|+|||.+++
T Consensus       227 ~------~~~~~~~~~l~~~G~iv~  245 (334)
T 3qwb_A          227 K------DTFEISLAALKRKGVFVS  245 (334)
T ss_dssp             G------GGHHHHHHHEEEEEEEEE
T ss_pred             h------HHHHHHHHHhccCCEEEE
Confidence            2      467788899999999874

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=82.37  E-value=2.9  Score=34.60  Aligned_cols=74  Identities=12%  Similarity=0.055  Sum_probs=47.5

Q ss_pred             eEEEECC--cchHHHHHhc----CceEEEecCCCCCcEE-------EccCCC----CCCCCCceeEEEEcccccCCCHHH
Q 027441          144 VIADFGC--GDARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSN----TPLNSSSVDVAVFCLSLMGINFPN  206 (223)
Q Consensus       144 ~ILDiGc--G~G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~----lp~~~~sfD~Vi~~~~l~~~d~~~  206 (223)
                      .||=+|+  |.|.++..++    .+|++++.++.+..+.       ..|..+    ..+....+|+|+-+..      ..
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g------~~  222 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVG------DK  222 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSC------HH
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCC------cH
Confidence            4999997  3466665555    5899999887332211       111111    1123457999886654      34


Q ss_pred             HHHHHHHccCCCCEEEc
Q 027441          207 YLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       207 ~l~e~~rvLkpgG~lvi  223 (223)
                      .+..+.++|+|+|.+++
T Consensus       223 ~~~~~~~~l~~~G~iv~  239 (324)
T 3nx4_A          223 VLAKVLAQMNYGGCVAA  239 (324)
T ss_dssp             HHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCEEEE
Confidence            88999999999999874

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=82.28  E-value=0.86  Score=38.54  Aligned_cols=19  Identities=47%  Similarity=0.751  Sum_probs=16.7

Q ss_pred             HHHHHHHHHccCCCCEEEc
Q 027441          205 PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       205 ~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+|.++.++|+|||.++|
T Consensus        86 ~~~l~~~~rvLk~~G~i~i  104 (319)
T 1eg2_A           86 KRWLAEAERVLSPTGSIAI  104 (319)
T ss_dssp             HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCeEEEE
Confidence            4788889999999999985

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=82.14  E-value=1  Score=38.27  Aligned_cols=56  Identities=13%  Similarity=0.083  Sum_probs=37.4

Q ss_pred             CCeEEEECCcchHHHHHhc----CceEEEecCCCC--------CcEEEccCCCCCCC-CCceeEEEEcc
Q 027441          142 SLVIADFGCGDARLAKSVK----NKVFSFDLVSND--------PSVIACDMSNTPLN-SSSVDVAVFCL  197 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~--------~~~~~~d~~~lp~~-~~sfD~Vi~~~  197 (223)
                      ..++||+-||.|.++..+.    ..|.++|+++..        .....+|+..+... -..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEECC
Confidence            4789999999999888775    357889998610        01125677654311 12489999663

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=81.56  E-value=3  Score=35.40  Aligned_cols=78  Identities=14%  Similarity=0.112  Sum_probs=49.7

Q ss_pred             cCCCCeEEEECC-c-chHHHHHhc----CceEEEecCCCC--------CcEEEccCCCCC-------CCCCceeEEEEcc
Q 027441          139 HSPSLVIADFGC-G-DARLAKSVK----NKVFSFDLVSND--------PSVIACDMSNTP-------LNSSSVDVAVFCL  197 (223)
Q Consensus       139 ~~~~~~ILDiGc-G-~G~~a~~la----~~v~gvDis~~~--------~~~~~~d~~~lp-------~~~~sfD~Vi~~~  197 (223)
                      ..++.+||-+|+ | .|..+..++    .+|+++|.++..        .+. ..|.....       .....+|+|+.+.
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~-~~~~~~~~~~~~~~~~~~~g~D~vid~~  239 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDR-PINYKTEPVGTVLKQEYPEGVDVVYESV  239 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE-EEETTTSCHHHHHHHHCTTCEEEEEECS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcE-EEecCChhHHHHHHHhcCCCCCEEEECC
Confidence            347789999993 3 466555554    579999987521        111 11221111       0124699999776


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .      ...+..+.++|+++|.+++
T Consensus       240 g------~~~~~~~~~~l~~~G~iv~  259 (362)
T 2c0c_A          240 G------GAMFDLAVDALATKGRLIV  259 (362)
T ss_dssp             C------THHHHHHHHHEEEEEEEEE
T ss_pred             C------HHHHHHHHHHHhcCCEEEE
Confidence            5      2578889999999999863

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=81.27  E-value=0.33  Score=40.21  Aligned_cols=78  Identities=12%  Similarity=0.062  Sum_probs=48.2

Q ss_pred             cCCCCeEEEECC--cchHHHHHhc----CceEEEecCCCCCcEE-------EccCCC-CCCCC--CceeEEEEcccccCC
Q 027441          139 HSPSLVIADFGC--GDARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSN-TPLNS--SSVDVAVFCLSLMGI  202 (223)
Q Consensus       139 ~~~~~~ILDiGc--G~G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~-lp~~~--~sfD~Vi~~~~l~~~  202 (223)
                      ..++.+||-+|+  |.|..+..++    .+|+++|.++....+.       ..|..+ ..+..  ..+|+|+. ...   
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~---  198 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG---  198 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC---
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH---
Confidence            347889999998  3455555444    5899999876433221       112111 00000  46999997 432   


Q ss_pred             CHHHHHHHHHHccCCCCEEEc
Q 027441          203 NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         ..+..+.++|+++|.+++
T Consensus       199 ---~~~~~~~~~l~~~G~~v~  216 (302)
T 1iz0_A          199 ---KEVEESLGLLAHGGRLVY  216 (302)
T ss_dssp             ---TTHHHHHTTEEEEEEEEE
T ss_pred             ---HHHHHHHHhhccCCEEEE
Confidence               357788899999999863

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=81.26  E-value=2.5  Score=36.43  Aligned_cols=92  Identities=14%  Similarity=0.038  Sum_probs=55.7

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-CceEEEecCC------------CCC---cEEEccCCCCCCCCCceeEE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-NKVFSFDLVS------------NDP---SVIACDMSNTPLNSSSVDVA  193 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-~~v~gvDis~------------~~~---~~~~~d~~~lp~~~~sfD~V  193 (223)
                      +.+++++.....+..||.|+.+.|.++..|+ ..++.+.=|-            ..+   .+...+.  +.-....||+|
T Consensus        27 ~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~~~~~~~~v  104 (375)
T 4dcm_A           27 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TADYPQQPGVV  104 (375)
T ss_dssp             HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGCCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TSCCCSSCSEE
T ss_pred             HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCCceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--ccccccCCCEE
Confidence            3456665543345789999999999999887 3555552221            000   1111221  11223568998


Q ss_pred             EEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +....=+--.....|..+...|.||+.+++
T Consensus       105 ~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~  134 (375)
T 4dcm_A          105 LIKVPKTLALLEQQLRALRKVVTSDTRIIA  134 (375)
T ss_dssp             EEECCSCHHHHHHHHHHHHTTCCTTSEEEE
T ss_pred             EEEcCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence            875542211445788889999999998864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=81.14  E-value=1.8  Score=36.35  Aligned_cols=78  Identities=12%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             CCCCeEEEECC--cchHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEccc
Q 027441          140 SPSLVIADFGC--GDARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGc--G~G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+|+  |.|..+..++    .+|+++|.++....+       ...|..+..        .....+|+|+.+..
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  244 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG  244 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC
Confidence            36789999998  4566555554    578999887522110       122332211        11246999997765


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                            ...+..+.++|+++|.+++
T Consensus       245 ------~~~~~~~~~~l~~~G~~v~  263 (343)
T 2eih_A          245 ------ALYFEGVIKATANGGRIAI  263 (343)
T ss_dssp             ------SSSHHHHHHHEEEEEEEEE
T ss_pred             ------HHHHHHHHHhhccCCEEEE
Confidence                  2356778899999998863

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=80.97  E-value=1.4  Score=37.13  Aligned_cols=46  Identities=17%  Similarity=0.326  Sum_probs=33.0

Q ss_pred             CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC
Q 027441          124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN  171 (223)
Q Consensus       124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~  171 (223)
                      .|...+..++....  .++..|||.-||+|..+....   .+.+|+|+++.
T Consensus       237 kp~~l~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~  285 (323)
T 1boo_A          237 FPAKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPE  285 (323)
T ss_dssp             CCTHHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHH
Confidence            34444455554432  478999999999999776654   68999999873

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=80.62  E-value=1.8  Score=36.03  Aligned_cols=77  Identities=18%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             CCC-eEEEECC-c-chHHHHHhc----CceEEEecCCCCCc---------EEEc-cC--CC-CCCCCCceeEEEEccccc
Q 027441          141 PSL-VIADFGC-G-DARLAKSVK----NKVFSFDLVSNDPS---------VIAC-DM--SN-TPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~-~ILDiGc-G-~G~~a~~la----~~v~gvDis~~~~~---------~~~~-d~--~~-lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++. +||-+|+ | .|.++..++    .+|++++.++.+..         ++.. +.  .. ..+....+|+|+.+..  
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g--  226 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG--  226 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC--
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCc--
Confidence            443 7999997 3 355555444    57999998864322         1111 11  11 1122346999987655  


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                          ...+..+.++|++||.+++
T Consensus       227 ----~~~~~~~~~~l~~~G~iv~  245 (330)
T 1tt7_A          227 ----GKQLASLLSKIQYGGSVAV  245 (330)
T ss_dssp             ----THHHHHHHTTEEEEEEEEE
T ss_pred             ----HHHHHHHHHhhcCCCEEEE
Confidence                2468889999999999863

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=80.23  E-value=0.75  Score=38.87  Aligned_cols=77  Identities=14%  Similarity=0.193  Sum_probs=47.6

Q ss_pred             CCCeEEEEC-Ccc-hHHHHHhc----CceEEEecCCCCCcE-------EEccCCC-C-----CCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFG-CGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSN-T-----PLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiG-cG~-G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~-l-----p~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+||=+| +|. |.++..++    .+|+++|.++.+..+       ...|... +     ......||+|+.+..   
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g---  226 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFN---  226 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSC---
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCC---
Confidence            578899994 543 55554444    589999887622111       0111111 0     012346999997654   


Q ss_pred             CCHHHHHHHHHHccCCCCEEE
Q 027441          202 INFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       202 ~d~~~~l~e~~rvLkpgG~lv  222 (223)
                        -+..+..+.++|+|+|.++
T Consensus       227 --~~~~~~~~~~~l~~~G~iv  245 (346)
T 3fbg_A          227 --TDMYYDDMIQLVKPRGHIA  245 (346)
T ss_dssp             --HHHHHHHHHHHEEEEEEEE
T ss_pred             --chHHHHHHHHHhccCCEEE
Confidence              2567889999999999985

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=80.18  E-value=1.3  Score=36.94  Aligned_cols=77  Identities=17%  Similarity=0.094  Sum_probs=46.8

Q ss_pred             CCC-eEEEECC--cchHHHHHhc----CceEEEecCCCCCcE-------EEccCCCC------CCCCCceeEEEEccccc
Q 027441          141 PSL-VIADFGC--GDARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNT------PLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~-~ILDiGc--G~G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~l------p~~~~sfD~Vi~~~~l~  200 (223)
                      ++. +||-+|+  |.|.++..++    .+|++++.++.+..+       ...|..+.      .+....+|+|+.+..- 
T Consensus       148 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~-  226 (328)
T 1xa0_A          148 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG-  226 (328)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT-
T ss_pred             CCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcH-
Confidence            443 7999997  3455555554    579999988633211       01122111      1223469999876542 


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                           ..+..+.++|++||.+++
T Consensus       227 -----~~~~~~~~~l~~~G~~v~  244 (328)
T 1xa0_A          227 -----RTLATVLSRMRYGGAVAV  244 (328)
T ss_dssp             -----TTHHHHHHTEEEEEEEEE
T ss_pred             -----HHHHHHHHhhccCCEEEE
Confidence                 257788899999999863

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=80.14  E-value=2.5  Score=35.55  Aligned_cols=79  Identities=14%  Similarity=0.206  Sum_probs=49.2

Q ss_pred             CCCCeEEEECCcchH--HHHHh-----cCceEEEecCCCCCcE-------EEccCCCCC-------CCC-CceeEEEEcc
Q 027441          140 SPSLVIADFGCGDAR--LAKSV-----KNKVFSFDLVSNDPSV-------IACDMSNTP-------LNS-SSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~--~a~~l-----a~~v~gvDis~~~~~~-------~~~d~~~lp-------~~~-~sfD~Vi~~~  197 (223)
                      .++.+||-+|+|.|.  .+..+     -.+|+++|.++....+       ...|..+..       +.. +.+|+|+.+.
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  248 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN  248 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECC
Confidence            477899999998543  33322     2468899987622110       112222211       112 4799999765


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..     +..+..+.++|+|+|.+++
T Consensus       249 g~-----~~~~~~~~~~l~~~G~iv~  269 (347)
T 1jvb_A          249 NS-----EKTLSVYPKALAKQGKYVM  269 (347)
T ss_dssp             CC-----HHHHTTGGGGEEEEEEEEE
T ss_pred             CC-----HHHHHHHHHHHhcCCEEEE
Confidence            52     4578889999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.84
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.84
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.83
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.8
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.79
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.79
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.77
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.75
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.72
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.72
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.72
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.69
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.67
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.67
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.67
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.67
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.65
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.65
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.63
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.63
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.6
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.6
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.59
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.58
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.56
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.53
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.53
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.51
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.5
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.5
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.47
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.47
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.46
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.46
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.45
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.45
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.43
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.43
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.43
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.42
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.42
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.4
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.38
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.36
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.34
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.27
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.26
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.23
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.22
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.21
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.21
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.12
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.1
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.09
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.06
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.03
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.94
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.86
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.86
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.83
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.81
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.78
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.76
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.74
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.72
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.7
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.66
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.61
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.57
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.57
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.56
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.53
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.47
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.41
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.4
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.39
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.28
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.24
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.21
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.2
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.16
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.16
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.12
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.11
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.1
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.05
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.0
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.91
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.9
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.87
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.85
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.76
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.71
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.57
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.41
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.39
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.34
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.27
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.23
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.99
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.29
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.97
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.56
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.4
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.19
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.06
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.83
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.21
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.2
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	93.93
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.77
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.63
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.43
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.1
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.89
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.72
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	90.04
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.41
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	87.45
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	87.11
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	87.06
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	85.55
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	85.5
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	83.47
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.42
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	82.66
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	81.31

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.84  E-value=3.7e-21  Score=155.54  Aligned_cols=93  Identities=19%  Similarity=0.308  Sum_probs=82.7

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCcee
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      ..+++.+... ++.+|||||||+|.++..++   .+|+|+|+|+               .++.+.++|++++|+++++||
T Consensus         5 ~~ll~~~~l~-~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           5 AKLMQIAALK-GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHHHTCC-SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHHhcCCC-CcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence            4566666554 78999999999999999887   5899999995               567899999999999999999


Q ss_pred             EEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+|..++||+ |+..+|.++.|+|+|||+|+|
T Consensus        84 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i  116 (231)
T d1vl5a_          84 IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL  116 (231)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccccccCCHHHHHHHHHHhcCCCcEEEE
Confidence            99999999999 999999999999999999875

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=3.9e-21  Score=156.44  Aligned_cols=93  Identities=16%  Similarity=0.246  Sum_probs=83.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCcee
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      +.+++.+... ++.+|||||||+|.++..++   .+|+|+|+|+               .++.++++|++++|+++++||
T Consensus         6 ~~l~~~~~~~-~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD   84 (234)
T d1xxla_           6 GLMIKTAECR-AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFD   84 (234)
T ss_dssp             HHHHHHHTCC-TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEE
T ss_pred             HHHHHHhCCC-CCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccc
Confidence            3455555544 88999999999999999998   5899999996               468899999999999999999


Q ss_pred             EEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+|.++++|+ |+..+|.++.|+|+|||++++
T Consensus        85 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~  117 (234)
T d1xxla_          85 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLL  117 (234)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeeeeceeecccCHHHHHHHHHHeeCCCcEEEE
Confidence            99999999999 999999999999999998874

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=1.5e-20  Score=149.97  Aligned_cols=87  Identities=24%  Similarity=0.275  Sum_probs=77.6

Q ss_pred             HhccCCCCeEEEECCcchHHHHHhcCceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHH
Q 027441          136 LKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPN  206 (223)
Q Consensus       136 l~~~~~~~~ILDiGcG~G~~a~~la~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~  206 (223)
                      +....+..+|||||||+|.++..+. +++|+|+|+        .++.++++|++++|+++++||+|+|..+|+|+ |+..
T Consensus        31 ~~~~~~~~~vLDiGcG~G~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~  109 (208)
T d1vlma_          31 VKCLLPEGRGVEIGVGTGRFAVPLK-IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER  109 (208)
T ss_dssp             HHHHCCSSCEEEETCTTSTTHHHHT-CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred             HHhhCCCCeEEEECCCCcccccccc-eEEEEeCChhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            3333366789999999999988775 578999997        57889999999999999999999999999999 8999


Q ss_pred             HHHHHHHccCCCCEEEc
Q 027441          207 YLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       207 ~l~e~~rvLkpgG~lvi  223 (223)
                      +|.++.++|+|||.|+|
T Consensus       110 ~l~~~~~~L~pgG~l~i  126 (208)
T d1vlma_         110 ALKEAYRILKKGGYLIV  126 (208)
T ss_dssp             HHHHHHHHEEEEEEEEE
T ss_pred             chhhhhhcCCCCceEEE
Confidence            99999999999999875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=3.6e-20  Score=148.53  Aligned_cols=84  Identities=20%  Similarity=0.364  Sum_probs=75.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441          140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI  202 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~  202 (223)
                      ++..+|||||||+|.++..++   .+|+|+|+|+              ..+.++.+|+.++|+++++||+|+|..+++|+
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~  115 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF  115 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence            467899999999999999998   5899999996              35678889999999999999999999999998


Q ss_pred             ---CHHHHHHHHHHccCCCCEEEc
Q 027441          203 ---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 ---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         ++..+|.++.++|+|||.|+|
T Consensus       116 ~~~d~~~~l~~i~~~LkpgG~lii  139 (226)
T d1ve3a1         116 EPLELNQVFKEVRRVLKPSGKFIM  139 (226)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ChhHHHHHHHHHHHHcCcCcEEEE
Confidence               566899999999999999875

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.1e-19  Score=147.41  Aligned_cols=83  Identities=19%  Similarity=0.225  Sum_probs=74.3

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC---------CCCcEEEccCCCCCCCCCceeEEEEc-ccccCC-CHHH
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------NDPSVIACDMSNTPLNSSSVDVAVFC-LSLMGI-NFPN  206 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~-~~l~~~-d~~~  206 (223)
                      ++.+|||||||+|.++..|+   .+|+|+|+|+         ....++.+|+.++|+++++||+|+|. .++||+ |+..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~  121 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK  121 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHH
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhHHH
Confidence            56899999999999999998   4799999997         33457889999999999999999986 578898 9999


Q ss_pred             HHHHHHHccCCCCEEEc
Q 027441          207 YLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       207 ~l~e~~rvLkpgG~lvi  223 (223)
                      +|.++.|+|+|||+|+|
T Consensus       122 ~l~~i~r~Lk~gG~~ii  138 (246)
T d2avna1         122 AFSEIRRVLVPDGLLIA  138 (246)
T ss_dssp             HHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHhhcCcCcEEEE
Confidence            99999999999999975

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.79  E-value=1.4e-19  Score=151.20  Aligned_cols=84  Identities=21%  Similarity=0.230  Sum_probs=77.7

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||||||+|.++..|+    .+|+|+|+|+                .++.+..+|+.++|+++++||+|++..++
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  145 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  145 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchh
Confidence            578999999999999998887    4799999996                36789999999999999999999999999


Q ss_pred             cCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+ ++..+|.++.|+|+|||.|+|
T Consensus       146 ~h~~d~~~~l~~~~~~LkpgG~l~~  170 (282)
T d2o57a1         146 LHSPDKLKVFQECARVLKPRGVMAI  170 (282)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHhcCCCcEEEE
Confidence            999 899999999999999999875

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.3e-19  Score=150.88  Aligned_cols=88  Identities=20%  Similarity=0.368  Sum_probs=74.3

Q ss_pred             HHHHHHHhcc--CCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeE
Q 027441          130 NIIVKWLKDH--SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       130 ~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      +.+...+...  .++.+|||||||+|.++..++     ..++|+|+|+          .++.+.++|+.++|+++++||+
T Consensus        71 ~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~  150 (268)
T d1p91a_          71 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDA  150 (268)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEE
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEE
Confidence            4444444332  356899999999999988886     3789999997          6788999999999999999999


Q ss_pred             EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++.++++|      +.|+.|+|||||.|++
T Consensus       151 v~~~~~~~~------~~e~~rvLkpgG~l~~  175 (268)
T d1p91a_         151 IIRIYAPCK------AEELARVVKPGGWVIT  175 (268)
T ss_dssp             EEEESCCCC------HHHHHHHEEEEEEEEE
T ss_pred             EeecCCHHH------HHHHHHHhCCCcEEEE
Confidence            999999877      6789999999999985

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=6.2e-19  Score=144.25  Aligned_cols=92  Identities=21%  Similarity=0.203  Sum_probs=79.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      +.+.+.+... ++.+|||||||+|.++..++    .+|+|+|+|+                .++.|..+|+..+ +.+++
T Consensus        23 ~~l~~~~~l~-pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~  100 (245)
T d1nkva_          23 ATLGRVLRMK-PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEK  100 (245)
T ss_dssp             HHHHHHTCCC-TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSC
T ss_pred             HHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCc
Confidence            4455554444 78999999999999988876    4899999996                3478999999988 46899


Q ss_pred             eeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|+|..+++|+ |+..++.++.|+|||||.|+|
T Consensus       101 fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i  135 (245)
T d1nkva_         101 CDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLI  135 (245)
T ss_dssp             EEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEE
T ss_pred             eeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEE
Confidence            9999999999999 999999999999999999985

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=7.7e-18  Score=137.31  Aligned_cols=82  Identities=16%  Similarity=0.261  Sum_probs=71.5

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEc-ccccCC
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFC-LSLMGI  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~-~~l~~~  202 (223)
                      +..+|||||||+|.++..|+   .+|+|+|+|+              .++.+.++|+++++++ +.||+|+|. .+++|+
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~  119 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF  119 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred             CCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhhcC
Confidence            55789999999999999887   5799999997              3688999999999987 589999997 477777


Q ss_pred             C---HHHHHHHHHHccCCCCEEEc
Q 027441          203 N---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +   +..+|.+++++|+|||+|+|
T Consensus       120 ~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         120 DEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHcCCCcEEEE
Confidence            4   45999999999999999975

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.72  E-value=6.3e-18  Score=136.65  Aligned_cols=91  Identities=13%  Similarity=0.153  Sum_probs=77.6

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-----------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDVAVFCL  197 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  197 (223)
                      +++.+.....+.+|||||||+|.++..++   .+|+|+|+|+           .++.++.+++.++++ +++||+|++..
T Consensus        11 ~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~   89 (225)
T d2p7ia1          11 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTH   89 (225)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEES
T ss_pred             HHHHhhhhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccc
Confidence            33444443467789999999999999998   4899999996           467888899988876 57899999999


Q ss_pred             cccCC-CHHHHHHHHH-HccCCCCEEEc
Q 027441          198 SLMGI-NFPNYLQEAQ-RVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~~~~l~e~~-rvLkpgG~lvi  223 (223)
                      +++|+ |+..+|.++. ++|+|||.|+|
T Consensus        90 vleh~~d~~~~l~~i~~~~Lk~gG~l~i  117 (225)
T d2p7ia1          90 VLEHIDDPVALLKRINDDWLAEGGRLFL  117 (225)
T ss_dssp             CGGGCSSHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeEecCCHHHHHHHHHHHhcCCCceEEE
Confidence            99999 9999999998 89999999985

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.72  E-value=4.5e-18  Score=142.23  Aligned_cols=93  Identities=22%  Similarity=0.290  Sum_probs=78.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC--------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      +.+.+.+....++.+|||||||+|.++..++      .+|+|+|+|+              .++.|..+|+..+|++ ++
T Consensus        16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~   94 (281)
T d2gh1a1          16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DK   94 (281)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SC
T ss_pred             HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CC
Confidence            3444444334467899999999999998886      3699999996              2567889999999885 57


Q ss_pred             eeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|+|.+++||+ ++..+|.++.++|||||.|++
T Consensus        95 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii  129 (281)
T d2gh1a1          95 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC  129 (281)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEE
T ss_pred             ceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEE
Confidence            9999999999999 999999999999999999874

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.7e-18  Score=136.12  Aligned_cols=84  Identities=19%  Similarity=0.291  Sum_probs=73.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      .+..+|||||||+|.++..++    .+|+|+|+|+               .++.|+++|+.++++++++||+|++..++|
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            356899999999999998875    4799999997               245789999999999999999999999999


Q ss_pred             CCC-H--HHHHHHHHHccCCCCEEEc
Q 027441          201 GIN-F--PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d-~--~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+. +  ..++.++.++|+|||.|+|
T Consensus       139 h~~~~~~~~~l~~i~~~Lk~~G~~~i  164 (222)
T d2ex4a1         139 HLTDQHLAEFLRRCKGSLRPNGIIVI  164 (222)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cchhhhhhhHHHHHHHhcCCcceEEE
Confidence            993 3  4799999999999999985

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.67  E-value=9.6e-17  Score=130.87  Aligned_cols=93  Identities=20%  Similarity=0.320  Sum_probs=76.0

Q ss_pred             HHHHHHHhcc-CCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCcee
Q 027441          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVD  191 (223)
Q Consensus       130 ~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD  191 (223)
                      +.+...+... .++.+|||||||+|.++..|+   .+|+|+|+|+              .++.++++|+.++++ +++||
T Consensus        25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD  103 (246)
T d1y8ca_          25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFD  103 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEE
T ss_pred             HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcc-ccccc
Confidence            4455555543 345799999999999999998   4799999997              368899999999887 46899


Q ss_pred             EEEEc-ccccCC----CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFC-LSLMGI----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~-~~l~~~----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+|. .+++|+    +...+|.+++++|+|||.|+|
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            99986 577776    455899999999999999985

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.67  E-value=2e-16  Score=127.46  Aligned_cols=91  Identities=14%  Similarity=0.215  Sum_probs=70.6

Q ss_pred             HHHHHHhc-cCCCCeEEEECCcchHHHHHhc-------CceEEEecCC----------------CCCcEEEccCCCCCCC
Q 027441          131 IIVKWLKD-HSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLN  186 (223)
Q Consensus       131 ~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~----------------~~~~~~~~d~~~lp~~  186 (223)
                      .+...+.. ..++.+|||||||+|..+..|+       .+|+|+|+|+                ..+.+..+|+.++  +
T Consensus        28 ~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~--~  105 (225)
T d1im8a_          28 AIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--E  105 (225)
T ss_dssp             HHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC--C
T ss_pred             HHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc--c
Confidence            34444433 2477899999999999887765       3799999997                2334455555554  4


Q ss_pred             CCceeEEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...+|+|++..++||+   ++..+|.+++|+|+|||.|++
T Consensus       106 ~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         106 IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeec
Confidence            5679999999999998   677999999999999999985

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.67  E-value=6.8e-17  Score=127.90  Aligned_cols=90  Identities=20%  Similarity=0.303  Sum_probs=75.2

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEE
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVA  193 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~V  193 (223)
                      ++..+... .+.+|||||||+|..+..|+   .+|+|+|+|+               .++.+...|+..+++ +++||+|
T Consensus        22 ~~~~~~~~-~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I   99 (198)
T d2i6ga1          22 VLAAAKVV-APGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFI   99 (198)
T ss_dssp             HHHHHTTS-CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEE
T ss_pred             HHHHcccC-CCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEE
Confidence            44444444 45699999999999999998   5899999997               356778889988886 6889999


Q ss_pred             EEcccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++..++||++   ...++.++.++|+|||++++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  132 (198)
T d2i6ga1         100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLI  132 (198)
T ss_dssp             EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            9999999993   45899999999999999875

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.67  E-value=2.7e-17  Score=135.66  Aligned_cols=83  Identities=18%  Similarity=0.247  Sum_probs=73.5

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-  202 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-  202 (223)
                      +..+|||+|||+|.++..|+    ..|+++|+|+             ..+.+.++|+.++++++++||+|++.++++|+ 
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~  172 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLT  172 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSC
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccccc
Confidence            56799999999999988765    5799999997             34678899999999999999999999999999 


Q ss_pred             CH--HHHHHHHHHccCCCCEEEc
Q 027441          203 NF--PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       203 d~--~~~l~e~~rvLkpgG~lvi  223 (223)
                      |.  ..+|.++.++|+|||+|+|
T Consensus       173 d~d~~~~l~~~~~~LkpgG~iii  195 (254)
T d1xtpa_         173 DADFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhHHHHHHHHHhcCCCcEEEE
Confidence            43  4889999999999999986

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.65  E-value=4.9e-17  Score=133.48  Aligned_cols=83  Identities=17%  Similarity=0.167  Sum_probs=70.9

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCC-CCCceeEEEEcccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSL  199 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~l  199 (223)
                      ++.+|||||||+|..+..++    .+|+|+|+|+                .++.+.++|+...++ .+.+||+|+|.+++
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l  103 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF  103 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred             CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence            67899999999999888776    4799999997                246788999987776 46789999999999


Q ss_pred             cCC-C----HHHHHHHHHHccCCCCEEEc
Q 027441          200 MGI-N----FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~-d----~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+ +    ...+|.++.++|+|||+|++
T Consensus       104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~  132 (252)
T d1ri5a_         104 HYAFSTSESLDIAQRNIARHLRPGGYFIM  132 (252)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             eecCCCHHHHHHHHHHHhceeCCCCEEEE
Confidence            997 2    34899999999999999974

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2e-16  Score=128.12  Aligned_cols=113  Identities=15%  Similarity=0.189  Sum_probs=83.5

Q ss_pred             HHHHHhHHhhhccCCC-chHHHHHHHHh---ccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------
Q 027441          111 DMYHSGYQEQMSHWPE-LPVNIIVKWLK---DHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------  170 (223)
Q Consensus       111 ~~~~~~~~~~~~~~p~-~~~~~i~~~l~---~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------  170 (223)
                      +.+...|......|.. .+-..+.+++.   ...++.+|||+|||+|..+.+|+   .+|+|+|+|+             
T Consensus        11 e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~   90 (229)
T d2bzga1          11 EEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLS   90 (229)
T ss_dssp             HHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhcc
Confidence            3344455444444532 22223333332   23477899999999999999998   5899999996             


Q ss_pred             -------------------CCCcEEEccCCCCC-CCCCceeEEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          171 -------------------NDPSVIACDMSNTP-LNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 -------------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                                         .++.+.++|+..++ ...+.||+|+...++||+   +.+.++.++.++|+|||.+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l  166 (229)
T d2bzga1          91 YSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLL  166 (229)
T ss_dssp             EEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEE
Confidence                               14567888887764 567899999999999999   556999999999999998764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=2.6e-16  Score=132.18  Aligned_cols=93  Identities=15%  Similarity=0.248  Sum_probs=71.9

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCCC-------------CCcEEEccCCCCCCCCCceeE
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------------DPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~-------------~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      +.+++.+.. .++.+|||||||.|.++..++    .+|+|+++|+.             ....+..+..+.++.+++||.
T Consensus        51 ~~~~~~l~l-~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~  129 (291)
T d1kpia_          51 KLALDKLNL-EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDR  129 (291)
T ss_dssp             HHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSE
T ss_pred             HHHHHhcCC-CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccce
Confidence            344444443 488999999999999999887    68999999971             111222333344566789999


Q ss_pred             EEEcccccCC-C---------HHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-N---------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-d---------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++..+++|+ +         ++.++.++.++|+|||.+++
T Consensus       130 i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l  170 (291)
T d1kpia_         130 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL  170 (291)
T ss_dssp             EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEE
T ss_pred             EeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEE
Confidence            9999999998 4         57999999999999999975

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.63  E-value=1.2e-16  Score=124.67  Aligned_cols=92  Identities=10%  Similarity=0.057  Sum_probs=74.8

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------------------CCCcEEEccC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------------------NDPSVIACDM  180 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------------------~~~~~~~~d~  180 (223)
                      .+...|.. +++.+|||+|||+|..+.+|+   .+|+|+|+|+                           ..+.+..+|+
T Consensus        11 ~~~~~l~~-~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          11 QYWSSLNV-VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHHHCC-CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHHHcCC-CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            34444543 378999999999999999998   5899999996                           2345778888


Q ss_pred             CCCCC-CCCceeEEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          181 SNTPL-NSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       181 ~~lp~-~~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..++. ....||+|++..+++|+   +...++..+.++|||||.+++
T Consensus        90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l  136 (201)
T d1pjza_          90 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  136 (201)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEE
Confidence            77753 35789999999999999   356999999999999998764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=4.9e-16  Score=129.82  Aligned_cols=90  Identities=16%  Similarity=0.314  Sum_probs=71.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      +.+++.+.. .++.+|||||||+|.++..++    .+|+|+|+|+                ..+.+...|...+   +++
T Consensus        42 ~~~~~~l~l-~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~  117 (280)
T d2fk8a1          42 DLNLDKLDL-KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEP  117 (280)
T ss_dssp             HHHHTTSCC-CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCC
T ss_pred             HHHHHHcCC-CCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccc
Confidence            344444443 488999999999999998876    5899999997                2233444554444   478


Q ss_pred             eeEEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||.|++..+++|+   +++.+|.++.++|||||.++|
T Consensus       118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i  154 (280)
T d2fk8a1         118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV  154 (280)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEE
Confidence            9999999999999   558999999999999999975

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.5e-16  Score=128.26  Aligned_cols=92  Identities=13%  Similarity=0.111  Sum_probs=67.4

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc-----------CceEEEecCC-------------CCCcEE-----EccCC-
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----------NKVFSFDLVS-------------NDPSVI-----ACDMS-  181 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----------~~v~gvDis~-------------~~~~~~-----~~d~~-  181 (223)
                      ++..+....+..+|||||||+|.++..++           ..++|+|+|+             .++..+     ..+++ 
T Consensus        31 ~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  110 (280)
T d1jqea_          31 IIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSE  110 (280)
T ss_dssp             HTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHH
T ss_pred             HHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence            33333333345689999999999877664           1478999986             112212     22221 


Q ss_pred             -----CCCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          182 -----NTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       182 -----~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                           ..++++++||+|+|.+++||+ |+..+|.+++++|+|||.|+|
T Consensus       111 ~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i  158 (280)
T d1jqea_         111 YQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLI  158 (280)
T ss_dssp             HHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred             hcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEE
Confidence                 235678999999999999999 999999999999999999875

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=1e-15  Score=128.12  Aligned_cols=89  Identities=18%  Similarity=0.256  Sum_probs=74.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCce
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      .+++.+.. .++.+|||||||.|.++.+++    .+|+|+++|+                .++.+..+|...+|   ++|
T Consensus        53 ~~~~~l~l-~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~f  128 (285)
T d1kpga_          53 LALGKLGL-QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPV  128 (285)
T ss_dssp             HHHTTTTC-CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCC
T ss_pred             HHHHHcCC-CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccc
Confidence            34444443 488999999999999999887    6899999996                45667778876664   679


Q ss_pred             eEEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |.|++..+++|+   +...++.++.|+|+|||.++|
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l  164 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL  164 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEE
Confidence            999999999998   568999999999999999975

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.58  E-value=2e-15  Score=119.23  Aligned_cols=92  Identities=17%  Similarity=0.252  Sum_probs=76.3

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-----------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      ..+++.+... ++.+|||||||+|.++..++   .+|+++|+++                 .++.+..+|+.. ++++.+
T Consensus        42 ~lLi~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~  119 (194)
T d1dusa_          42 KILVENVVVD-KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRK  119 (194)
T ss_dssp             HHHHHHCCCC-TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSC
T ss_pred             HHHHHhCCcC-CCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCC
Confidence            4566666554 78999999999999999887   5799999996                 246777888876 567889


Q ss_pred             eeEEEEcccccCC-C-HHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGI-N-FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~-d-~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++...+|+. + ...++.++.++|+|||.|+|
T Consensus       120 fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence            9999999998877 3 46899999999999998864

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.56  E-value=8e-15  Score=120.27  Aligned_cols=117  Identities=14%  Similarity=0.224  Sum_probs=82.3

Q ss_pred             HHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----
Q 027441          100 LDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----  170 (223)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----  170 (223)
                      ++++..+++.-..|.    ..+..+.....+.++..+. .....+|||||||+|.++..++     .+++++|+.+    
T Consensus        44 ~~~~~~~~~~~~~f~----~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~  118 (253)
T d1tw3a2          44 YEDLAGRPDLRASFD----SLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDT  118 (253)
T ss_dssp             HHHHHTCHHHHHHHH----HHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHH
T ss_pred             HHHHhhCHHHHHHHH----HHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHH
Confidence            344444554433333    2222333333455565553 3356899999999999999887     3688899864    


Q ss_pred             -----------CCCcEEEccCCCCCCCCCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          171 -----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 -----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                                 .++.++.+|+... . ..+||+|++..++||++.   ..+|.+++++|+|||.|+|
T Consensus       119 a~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i  183 (253)
T d1tw3a2         119 ARSYLKDEGLSDRVDVVEGDFFEP-L-PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILI  183 (253)
T ss_dssp             HHHHHHHTTCTTTEEEEECCTTSC-C-SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHhhcccchhhccccchhh-c-ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEE
Confidence                       4678889998653 2 356999999999999843   3789999999999999875

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-15  Score=123.56  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCC--CCCCCCCceeEEE-----E
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMS--NTPLNSSSVDVAV-----F  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~--~lp~~~~sfD~Vi-----~  195 (223)
                      ++.+|||||||+|..+..++    .+|+|+|+|+              ..+.++..++.  ..++++++||.|+     +
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~  132 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  132 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence            67899999999999999887    4799999997              22344455543  2356788999987     4


Q ss_pred             cccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...++|+ +++.++.++.|+|||||+|++
T Consensus       133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         133 SEETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence            5666677 888999999999999999874

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.53  E-value=3.5e-15  Score=117.12  Aligned_cols=92  Identities=20%  Similarity=0.291  Sum_probs=77.7

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      ...++..+... ++.+|||||||+|.++..++   .+|+|+|+++                .++.++.+|+.+.++....
T Consensus        22 r~~il~~l~~~-~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~  100 (186)
T d1l3ia_          22 RCLIMCLAEPG-KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD  100 (186)
T ss_dssp             HHHHHHHHCCC-TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHHHHhcCCC-CCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence            35666666555 88999999999999999887   5899999996                4778899999888777889


Q ss_pred             eeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++....+  +...++..+.++|+|||.|++
T Consensus       101 ~D~v~~~~~~~--~~~~~~~~~~~~LkpgG~lvi  132 (186)
T d1l3ia_         101 IDIAVVGGSGG--ELQEILRIIKDKLKPGGRIIV  132 (186)
T ss_dssp             EEEEEESCCTT--CHHHHHHHHHHTEEEEEEEEE
T ss_pred             cCEEEEeCccc--cchHHHHHHHHHhCcCCEEEE
Confidence            99999987654  457899999999999999874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=1.1e-14  Score=116.94  Aligned_cols=88  Identities=15%  Similarity=0.182  Sum_probs=72.6

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..+++.+... ++.+|||||||+|+++..++      ..|+++|+++               .++.++.+|+...++.++
T Consensus        65 a~~l~~l~l~-~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~  143 (213)
T d1dl5a1          65 ALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (213)
T ss_dssp             HHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhhhcc-ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence            4566666544 88999999999999988876      3699999997               467788899888777788


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +||+|++..+++++.     .++.++|+|||.|++
T Consensus       144 ~fD~I~~~~~~~~~p-----~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         144 PYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIV  173 (213)
T ss_dssp             CEEEEEECSBBSCCC-----HHHHHHEEEEEEEEE
T ss_pred             chhhhhhhccHHHhH-----HHHHHhcCCCcEEEE
Confidence            999999999999874     356788999999975

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=3.5e-14  Score=120.67  Aligned_cols=82  Identities=17%  Similarity=0.218  Sum_probs=72.6

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+|||||||+|.++..++    .+|+|+|.++               .++.++.+++.++++++.+||+|++..+.++
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~  117 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence            68899999999999988776    4799999997               4577899999999999999999999887775


Q ss_pred             C----CHHHHHHHHHHccCCCCEEE
Q 027441          202 I----NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       202 ~----d~~~~l~e~~rvLkpgG~lv  222 (223)
                      +    ..+.++.++.|+|||||+++
T Consensus       118 ~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         118 LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eccchhHHHHHHHHHhccCCCeEEE
Confidence            5    57789999999999999986

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=8.6e-15  Score=122.30  Aligned_cols=93  Identities=16%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCCC-------------------CcEEEccCCC----
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSND-------------------PSVIACDMSN----  182 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~~-------------------~~~~~~d~~~----  182 (223)
                      .+.+.+.+... +..+|||||||+|.++..|+   .+|+|+|+|+..                   ..+..+++..    
T Consensus        45 ~~~l~~~l~~~-~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T d1xvaa_          45 KAWLLGLLRQH-GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  123 (292)
T ss_dssp             HHHHHHHHHHT-TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHHhhhc-CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc
Confidence            35566767665 56899999999999999998   489999999721                   1122333321    


Q ss_pred             CCCCCCceeEEEEcc-cccCC-C-------HHHHHHHHHHccCCCCEEEc
Q 027441          183 TPLNSSSVDVAVFCL-SLMGI-N-------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       183 lp~~~~sfD~Vi~~~-~l~~~-d-------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+ ..+||+|+|.. +++|+ +       ...+|.++.|+|+|||+|+|
T Consensus       124 ~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         124 VPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             SCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            232 46799999764 78887 2       44799999999999999986

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.47  E-value=2e-14  Score=118.85  Aligned_cols=87  Identities=23%  Similarity=0.309  Sum_probs=74.7

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC------------------CCCcEEEccCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS------------------NDPSVIACDMSNTPLN  186 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~------------------~~~~~~~~d~~~lp~~  186 (223)
                      .|+..+... |+.+|||+|||+|.++..|+      ++|+++|+++                  .++.+..+|+.+.+++
T Consensus        87 ~Ii~~l~i~-PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~  165 (264)
T d1i9ga_          87 QIVHEGDIF-PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  165 (264)
T ss_dssp             HHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHHHHhCCC-CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc
Confidence            455555544 89999999999999998887      5899999996                  4677889999999999


Q ss_pred             CCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          187 SSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       187 ~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +++||.|++     ++ ++..++.++.++|||||.|++
T Consensus       166 ~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~  198 (264)
T d1i9ga_         166 DGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMV  198 (264)
T ss_dssp             TTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEE
T ss_pred             CCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEE
Confidence            999999985     45 888999999999999999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=6.5e-14  Score=118.44  Aligned_cols=82  Identities=20%  Similarity=0.221  Sum_probs=72.4

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+++               .++.++.+|+.+++++..+||+|++....++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~  112 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  112 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence            67899999999999988776    4799999997               4578889999999999999999999877775


Q ss_pred             C----CHHHHHHHHHHccCCCCEEE
Q 027441          202 I----NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       202 ~----d~~~~l~e~~rvLkpgG~lv  222 (223)
                      +    ..+.++..+.|+|+|||.++
T Consensus       113 l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         113 LFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eccHHHHHHHHHHHHhcCCCCeEEE
Confidence            5    57899999999999999986

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=115.70  Aligned_cols=82  Identities=21%  Similarity=0.248  Sum_probs=71.7

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+++               .++.++.+|+.++++++..||+|++....++
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~  114 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF  114 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeee
Confidence            67899999999999988776    4799999997               4678899999999999999999999887776


Q ss_pred             C----CHHHHHHHHHHccCCCCEEE
Q 027441          202 I----NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       202 ~----d~~~~l~e~~rvLkpgG~lv  222 (223)
                      +    .++.++....++|+|||.++
T Consensus       115 ~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         115 LLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccHHHHHHHHhcCCCCcEEe
Confidence            6    35588888899999999986

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.9e-15  Score=122.12  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=64.3

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCCCCCcE-----------------------------------------
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSV-----------------------------------------  175 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~~~~-----------------------------------------  175 (223)
                      ++.+|||||||+|.++..++    .+|+|+|+|+..+.+                                         
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  130 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence            56789999999999887665    369999999722110                                         


Q ss_pred             ----EE----ccCCCCCCCCCceeEEEEcccccCC-----CHHHHHHHHHHccCCCCEEEc
Q 027441          176 ----IA----CDMSNTPLNSSSVDVAVFCLSLMGI-----NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       176 ----~~----~d~~~lp~~~~sfD~Vi~~~~l~~~-----d~~~~l~e~~rvLkpgG~lvi  223 (223)
                          ..    .+....|++.++||+|++.+++||+     ++..++.++.++|||||.|++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~  191 (257)
T d2a14a1         131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT  191 (257)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEE
Confidence                11    1222346778999999999999987     355899999999999999985

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.45  E-value=2.5e-14  Score=114.48  Aligned_cols=84  Identities=14%  Similarity=0.134  Sum_probs=65.9

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEEE-ccccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVF-CLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~-~~~l~  200 (223)
                      .|+.+|||||||+|..+..++     .+|+|+|+|+             .++.++.+|+...+.....+|.|.+ ...++
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~  134 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIA  134 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEeccc
Confidence            478999999999999888776     4799999997             5778888998876655544443322 23455


Q ss_pred             CC-CHHHHHHHHHHccCCCCEEEc
Q 027441          201 GI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |. +...++.++.++|||||.++|
T Consensus       135 ~~~~~~~~l~~~~~~LkpgG~l~i  158 (209)
T d1nt2a_         135 QKNQIEILKANAEFFLKEKGEVVI  158 (209)
T ss_dssp             STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ChhhHHHHHHHHHHHhccCCeEEE
Confidence            55 778999999999999999875

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.45  E-value=4e-14  Score=112.85  Aligned_cols=83  Identities=11%  Similarity=0.237  Sum_probs=71.1

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCC--CCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~  198 (223)
                      ....|||||||+|.++..++     ..++|+|+++               .|+.++.+|+..+.  ++++++|.|++.+.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence            34589999999999999887     4799999996               57889999998765  78999999999888


Q ss_pred             ccCCC---------HHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGIN---------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d---------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..|..         .+.+|.++.|+|||||.|+|
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence            87662         15899999999999999975

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.43  E-value=8.8e-14  Score=112.78  Aligned_cols=84  Identities=15%  Similarity=0.143  Sum_probs=69.4

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCC-CCCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNT-PLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~~l~  200 (223)
                      .|+.+|||||||+|..+..++     ..|+|+|+|+             .++.++.+|.... ++.+..+|++++...++
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~  152 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVA  152 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecccc
Confidence            478999999999999988887     5799999997             4566677777654 34567788888888888


Q ss_pred             CC-CHHHHHHHHHHccCCCCEEEc
Q 027441          201 GI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |. ++..++.++.++|||||.++|
T Consensus       153 ~~~~~~~~l~~~~r~LKpgG~~~i  176 (230)
T d1g8sa_         153 QPNQAEILIKNAKWFLKKGGYGMI  176 (230)
T ss_dssp             STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chHHHHHHHHHHHHhcccCceEEE
Confidence            77 778999999999999999875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.5e-14  Score=112.43  Aligned_cols=89  Identities=17%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             HHHHHHHh-ccCCCCeEEEECCcchHHHHHhc------CceEEEecCC--------------------CCCcEEEccCCC
Q 027441          130 NIIVKWLK-DHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------------NDPSVIACDMSN  182 (223)
Q Consensus       130 ~~i~~~l~-~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------------~~~~~~~~d~~~  182 (223)
                      ..+++.|. ...++.+|||||||+|+.+..++      .+|+++|+++                    .++.+..+|+..
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            35666663 23478999999999999887776      4899999996                    356678899888


Q ss_pred             CCCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          183 TPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       183 lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .++.++.||+|++..+++++.     .++.+.|+|||.|++
T Consensus       144 ~~~~~~~fD~I~~~~~~~~ip-----~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         144 GYAEEAPYDAIHVGAAAPVVP-----QALIDQLKPGGRLIL  179 (224)
T ss_dssp             CCGGGCCEEEEEECSBBSSCC-----HHHHHTEEEEEEEEE
T ss_pred             ccchhhhhhhhhhhcchhhcC-----HHHHhhcCCCcEEEE
Confidence            887889999999999998864     357899999999985

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.43  E-value=1.4e-13  Score=113.07  Aligned_cols=91  Identities=19%  Similarity=0.264  Sum_probs=70.4

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      +.+++.+. .....+|||||||+|.++..++     .+++++|+..               .++.++.+|+.. |++ ..
T Consensus        71 ~~~~~~~d-~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~  147 (256)
T d1qzza2          71 EAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VT  147 (256)
T ss_dssp             HHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CC
T ss_pred             HHHHhcCC-CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-cc
Confidence            34444432 3356799999999999999887     3788999853               456777888764 443 45


Q ss_pred             eeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||+|++.++|||++.   ..+|++++++|+|||.|+|
T Consensus       148 ~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI  184 (256)
T d1qzza2         148 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLV  184 (256)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhhccccccccCcHHHHHHHHHHHhhcCCcceeEE
Confidence            999999999999843   4789999999999998875

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4e-14  Score=116.80  Aligned_cols=83  Identities=17%  Similarity=0.284  Sum_probs=63.3

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCCCCCc------------------------------------------
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPS------------------------------------------  174 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~~~------------------------------------------  174 (223)
                      .+.+|||||||+|.++..++    .+|+|+|+|+.++.                                          
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  133 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence            56899999999998765444    47999999972111                                          


Q ss_pred             ---EEEccCCC------CCCCCCceeEEEEcccccCC--C---HHHHHHHHHHccCCCCEEEc
Q 027441          175 ---VIACDMSN------TPLNSSSVDVAVFCLSLMGI--N---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       175 ---~~~~d~~~------lp~~~~sfD~Vi~~~~l~~~--d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                         +..+|+..      .++..++||+|++.+++||+  +   +..+|.++.++|||||.|++
T Consensus       134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~  196 (263)
T d2g72a1         134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL  196 (263)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence               22345532      23446789999999999987  3   56899999999999999985

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=5e-14  Score=115.86  Aligned_cols=90  Identities=20%  Similarity=0.268  Sum_probs=68.5

Q ss_pred             HHHHHHhc-cCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeE
Q 027441          131 IIVKWLKD-HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~  192 (223)
                      .++..+.. ..++.+|||+|||+|.++..++   .+|+|+|+++              .++.++.+|+.. ++++++||+
T Consensus       109 l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~  187 (254)
T d2nxca1         109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDL  187 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEE
T ss_pred             HHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccch
Confidence            44444433 2478999999999999988776   6899999998              245567777654 345689999


Q ss_pred             EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++....+  ....++.++.++|+|||+|++
T Consensus       188 V~ani~~~--~l~~l~~~~~~~LkpGG~lil  216 (254)
T d2nxca1         188 LVANLYAE--LHAALAPRYREALVPGGRALL  216 (254)
T ss_dssp             EEEECCHH--HHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhccccc--cHHHHHHHHHHhcCCCcEEEE
Confidence            99875433  345788999999999999985

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5e-14  Score=119.90  Aligned_cols=92  Identities=12%  Similarity=0.118  Sum_probs=72.5

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC------------------------CCCcEEEccC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------------------NDPSVIACDM  180 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------------------~~~~~~~~d~  180 (223)
                      ..+++.+.. .++.+|||||||+|.++..++     .+++|+|+++                        .++.++.+|+
T Consensus       141 ~~~~~~~~l-~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         141 AQMIDEIKM-TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHHSCC-CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHHcCC-CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            445555543 378999999999999888776     4799999996                        3578999999


Q ss_pred             CCCCCCCCce--eEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          181 SNTPLNSSSV--DVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       181 ~~lp~~~~sf--D~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .++|+.+..|  |+|++ ..+.|. +....|.++.|+|||||.+++
T Consensus       220 ~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~  264 (328)
T d1nw3a_         220 LSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVS  264 (328)
T ss_dssp             TSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             cccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEE
Confidence            9988877655  55555 455555 788999999999999999974

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.38  E-value=3e-13  Score=109.13  Aligned_cols=87  Identities=17%  Similarity=0.148  Sum_probs=70.7

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAV  194 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi  194 (223)
                      .+++.+... ++.+|||||||+|+++..|+   .+|+++|+++             .++.++.+|........+.||+|+
T Consensus        61 ~ml~~L~l~-~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Ii  139 (224)
T d1vbfa_          61 FMLDELDLH-KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVV  139 (224)
T ss_dssp             HHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             HHHHHhhhc-ccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHH
Confidence            456666544 88999999999999988777   7899999986             577888899866554678899999


Q ss_pred             EcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +..+++++.     ..+.+.|+|||.|++
T Consensus       140 v~~a~~~ip-----~~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         140 VWATAPTLL-----CKPYEQLKEGGIMIL  163 (224)
T ss_dssp             ESSBBSSCC-----HHHHHTEEEEEEEEE
T ss_pred             hhcchhhhh-----HHHHHhcCCCCEEEE
Confidence            999988764     345688999999975

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.36  E-value=2.6e-13  Score=111.21  Aligned_cols=87  Identities=13%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      .|+..+... |+.+|||+|||+|.++..|+      ++|+++|+++                .++.+..+|+.+. +++.
T Consensus        76 ~Ii~~l~i~-pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~  153 (250)
T d1yb2a1          76 YIIMRCGLR-PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQ  153 (250)
T ss_dssp             -----CCCC-TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSC
T ss_pred             HHHHHcCCC-CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccc
Confidence            344444444 89999999999999888876      4799999996                4677888898776 4678


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .||.|++.    -.++..+|.++.++|||||.|++
T Consensus       154 ~fD~V~ld----~p~p~~~l~~~~~~LKpGG~lv~  184 (250)
T d1yb2a1         154 MYDAVIAD----IPDPWNHVQKIASMMKPGSVATF  184 (250)
T ss_dssp             CEEEEEEC----CSCGGGSHHHHHHTEEEEEEEEE
T ss_pred             eeeeeeec----CCchHHHHHHHHHhcCCCceEEE
Confidence            99999853    22778999999999999999974

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.34  E-value=1.3e-12  Score=103.94  Aligned_cols=83  Identities=14%  Similarity=0.256  Sum_probs=69.4

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCC--CCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~  198 (223)
                      ....|||||||+|.++..+|     ..++|+|+++               .|+.++.+|+..+.  +++.++|.|++.+.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence            34689999999999998887     4689999996               57899999998865  77899999997776


Q ss_pred             ccCCC---------HHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGIN---------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d---------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -.|..         .+.+|..+.++|+|||.|+|
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            55441         26899999999999999975

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.2e-12  Score=109.35  Aligned_cols=88  Identities=19%  Similarity=0.290  Sum_probs=67.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC--------------------------CCCcEEEc
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------------------NDPSVIAC  178 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------------------~~~~~~~~  178 (223)
                      .|+..+... |+.+|||+|||+|.++..|+      ++|+++|+++                          .++.+..+
T Consensus        89 ~Il~~l~i~-pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~  167 (324)
T d2b25a1          89 MILSMMDIN-PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  167 (324)
T ss_dssp             HHHHHHTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHHHhCCC-CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence            566666555 89999999999999998887      4799999985                          35778888


Q ss_pred             cCCCCC--CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          179 DMSNTP--LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       179 d~~~lp--~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+....  +++..||.|+...    .++..+|.++.++|||||.|++
T Consensus       168 di~~~~~~~~~~~fD~V~LD~----p~P~~~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         168 DISGATEDIKSLTFDAVALDM----LNPHVTLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             CTTCCC-------EEEEEECS----SSTTTTHHHHGGGEEEEEEEEE
T ss_pred             chhhcccccCCCCcceEeecC----cCHHHHHHHHHHhccCCCEEEE
Confidence            987654  4567899998522    2566899999999999999975

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=7e-12  Score=101.17  Aligned_cols=82  Identities=20%  Similarity=0.191  Sum_probs=65.1

Q ss_pred             CCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCC---CCCCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSN---TPLNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~---lp~~~~sfD~Vi~~~  197 (223)
                      .|+.+|||+|||+|..+..|+      ++|+|+|+++             .++..+..|+..   ++.....+|+|++. 
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d-  150 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED-  150 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC-
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE-
Confidence            488999999999999998887      5899999997             445566777644   34455778988763 


Q ss_pred             cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       +.|. +...++.++.++|+|||.++|
T Consensus       151 -~~~~~~~~~~l~~~~~~LkpgG~lvi  176 (227)
T d1g8aa_         151 -VAQPTQAKILIDNAEVYLKRGGYGMI  176 (227)
T ss_dssp             -CCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -ccccchHHHHHHHHHHhcccCCeEEE
Confidence             4444 677899999999999999875

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=3.5e-12  Score=105.28  Aligned_cols=86  Identities=21%  Similarity=0.314  Sum_probs=66.1

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~  188 (223)
                      .|+..+... ++.+|||+|||+|.++..|+      ++|+++|+++                .++.+...|+. ..+...
T Consensus        94 ~Ii~~l~i~-pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~-~~~~~~  171 (266)
T d1o54a_          94 FIAMMLDVK-EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS-EGFDEK  171 (266)
T ss_dssp             HHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG-GCCSCC
T ss_pred             HHHHhhCCC-CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc-cccccc
Confidence            455555544 89999999999999888886      4899999997                23344445542 235567


Q ss_pred             ceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .||.|+     +++ +++.+|.++.++|||||.|++
T Consensus       172 ~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~  202 (266)
T d1o54a_         172 DVDALF-----LDVPDPWNYIDKCWEALKGGGRFAT  202 (266)
T ss_dssp             SEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEE
T ss_pred             ceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEE
Confidence            799886     355 889999999999999999974

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.22  E-value=1.8e-11  Score=96.26  Aligned_cols=93  Identities=14%  Similarity=0.113  Sum_probs=65.0

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHH----HHHhc---------CceEEEecCC---------------------------
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARL----AKSVK---------NKVFSFDLVS---------------------------  170 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~----a~~la---------~~v~gvDis~---------------------------  170 (223)
                      .+.+.+....+..+||++|||+|.-    +..+.         -+|+|+|+++                           
T Consensus        14 ~L~~~~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~y   93 (193)
T d1af7a2          14 ILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRY   93 (193)
T ss_dssp             HHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHH
T ss_pred             HHHHHHhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhc
Confidence            3444444444667999999999983    33332         1589999996                           


Q ss_pred             -------------------CCCcEEEccCCC-CCCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441          171 -------------------NDPSVIACDMSN-TPLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 -------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi  223 (223)
                                         ..+.+...+... .+...+.||+|+|.++|++++.+   .++..++++|+|||+|+|
T Consensus        94 f~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2          94 FMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             EEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                               011122233322 22345789999999999999655   999999999999999985

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.21  E-value=1.1e-11  Score=99.22  Aligned_cols=89  Identities=22%  Similarity=0.260  Sum_probs=72.3

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      ...+++.+... ++.+|||||||+|+.+..++    .+|+++|..+               .++.+..+|........+.
T Consensus        67 ~a~ml~~L~l~-~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p  145 (215)
T d1jg1a_          67 VAIMLEIANLK-PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP  145 (215)
T ss_dssp             HHHHHHHHTCC-TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHHHhhccC-ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence            34667777655 88999999999999888776    4799999986               6788999999876666889


Q ss_pred             eeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ||.|++..++.++...     +...|+|||+|++
T Consensus       146 fD~Iiv~~a~~~ip~~-----l~~qL~~gGrLv~  174 (215)
T d1jg1a_         146 YDVIIVTAGAPKIPEP-----LIEQLKIGGKLII  174 (215)
T ss_dssp             EEEEEECSBBSSCCHH-----HHHTEEEEEEEEE
T ss_pred             ceeEEeecccccCCHH-----HHHhcCCCCEEEE
Confidence            9999999998876432     5567999999974

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=1.1e-11  Score=99.76  Aligned_cols=89  Identities=12%  Similarity=0.161  Sum_probs=71.4

Q ss_pred             HHHHHHHh-ccCCCCeEEEECCcchHHHHHhc-----------CceEEEecCC--------------------CCCcEEE
Q 027441          130 NIIVKWLK-DHSPSLVIADFGCGDARLAKSVK-----------NKVFSFDLVS--------------------NDPSVIA  177 (223)
Q Consensus       130 ~~i~~~l~-~~~~~~~ILDiGcG~G~~a~~la-----------~~v~gvDis~--------------------~~~~~~~  177 (223)
                      ..+++.|. ...++.+|||||||+|+.+..++           .+|+++|+.+                    .++.+..
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            35666663 34578999999999999888776           1699999986                    3678889


Q ss_pred             ccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          178 CDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       178 ~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|......+.+.||.|++..++.+++.     .+.+.|+|||+|++
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~-----~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAPDTPT-----ELINQLASGGRLIV  188 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCCH-----HHHHTEEEEEEEEE
T ss_pred             cccccccccccceeeEEEEeechhchH-----HHHHhcCCCcEEEE
Confidence            998877667789999999999887653     46789999999974

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.12  E-value=5.5e-11  Score=96.78  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      +.+++.+.......+|||||||+|.++..++     -+++.+|+..        .++.++.+|+.+ +++  ..|+|++.
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~  146 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILK  146 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEE
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCccc-ccc--cceEEEEe
Confidence            3444444333356899999999999999887     3688888754        578889999864 333  35999999


Q ss_pred             ccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGIN---FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~d---~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .++|+.+   ...+|+.+++.|+|||.|+|
T Consensus       147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI  176 (244)
T d1fp1d2         147 AVCHNWSDEKCIEFLSNCHKALSPNGKVII  176 (244)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            9999883   44899999999999999886

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=4.6e-11  Score=103.79  Aligned_cols=92  Identities=8%  Similarity=0.050  Sum_probs=62.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCCCCC------------------------cE-EEcc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSNDP------------------------SV-IACD  179 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~~~------------------------~~-~~~d  179 (223)
                      ..|++.+.. .++.+|||||||+|..+..++     .+|+|+|+++..+                        .+ ..++
T Consensus       206 ~~Il~~l~L-kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~  284 (406)
T d1u2za_         206 SDVYQQCQL-KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS  284 (406)
T ss_dssp             HHHHHHTTC-CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred             HHHHHHhCC-CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence            344444443 488999999999999888776     4799999997111                        11 1233


Q ss_pred             CCCCCCC---CCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441          180 MSNTPLN---SSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       180 ~~~lp~~---~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ....++.   -..+|+|++.. ++|. +...+|.++.|+|||||.|++
T Consensus       285 f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs  331 (406)
T d1u2za_         285 FVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIIS  331 (406)
T ss_dssp             STTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             hhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEE
Confidence            3222211   13467777654 4455 778999999999999999874

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.09  E-value=3.4e-10  Score=91.83  Aligned_cols=149  Identities=13%  Similarity=0.201  Sum_probs=91.7

Q ss_pred             CchHHHHHHchhcccccccccccccccCc-------hHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccC
Q 027441           68 PSSFLDKMRARLSGGHFRMLNEKLYTCTG-------KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHS  140 (223)
Q Consensus        68 ~~~~~~~~~~~~~~~~fr~~~e~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~  140 (223)
                      +.++......+.+-..+..+.+.+.+-..       ...++++..+++.-..|........    ......++.......
T Consensus         5 ~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~----~~~~~~~~~~~~~~~   80 (243)
T d1kyza2           5 ISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHS----TITMKKILETYTGFE   80 (243)
T ss_dssp             THHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHH----HHHHHHHHHHCCTTS
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhh----hhHHHHHHHhccccc
Confidence            34444444555444444434333332211       1234556666665544443333222    111233333332222


Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCC---CH
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NF  204 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d~  204 (223)
                      ...+|||||||+|.++..++     .+++++|+.+        .++.++.+|+.. |++.  .|+++...++|..   +.
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~~~  157 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDEHC  157 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHHHH
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHHHH
Confidence            35789999999999999887     4788999975        567788889854 3333  4677888899866   45


Q ss_pred             HHHHHHHHHccCCCCEEEc
Q 027441          205 PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       205 ~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..+|+.+++.|+|||.++|
T Consensus       158 ~~iL~~~~~al~pgg~~li  176 (243)
T d1kyza2         158 LKFLKNCYEALPDNGKVIV  176 (243)
T ss_dssp             HHHHHHHHHHCCSSSCEEE
T ss_pred             HHHHHHHHHhcCCCceEEE
Confidence            5999999999999998875

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.06  E-value=2.2e-10  Score=93.10  Aligned_cols=149  Identities=16%  Similarity=0.181  Sum_probs=91.7

Q ss_pred             CchHHHHHHchhcccccccccccccccCch--------HHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhcc
Q 027441           68 PSSFLDKMRARLSGGHFRMLNEKLYTCTGK--------EALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH  139 (223)
Q Consensus        68 ~~~~~~~~~~~~~~~~fr~~~e~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~  139 (223)
                      +.|+...+..|.+...+..+.+.+......        ..++++..+++.-+.|.....    .+.......+.......
T Consensus         3 ~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~----~~s~~~~~~~~~~~~~~   78 (244)
T d1fp2a2           3 LAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMA----SDSKLINLALRDCDFVF   78 (244)
T ss_dssp             CHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHH----HTHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhh----hhhhhhhhhHhhhcccc
Confidence            455666666666666555444444332111        123444445444333332221    11111112222211122


Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCCCH--
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINF--  204 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~--  204 (223)
                      ....+|||||||+|.++..++     .+++.+|+..        .++.++.+|+... .+  .+|++++..+||+.+.  
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLHdw~d~~  155 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS-IP--NADAVLLKYILHNWTDKD  155 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTC-CC--CCSEEEEESCGGGSCHHH
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccC-CC--CCcEEEEEeecccCChHH
Confidence            245789999999999999887     4788899764        6788999998753 23  4799999999998833  


Q ss_pred             -HHHHHHHHHccCCC---CEEEc
Q 027441          205 -PNYLQEAQRVLKPR---GEEQI  223 (223)
Q Consensus       205 -~~~l~e~~rvLkpg---G~lvi  223 (223)
                       ..+|+.+++.|+||   |.++|
T Consensus       156 ~~~iL~~~~~al~pgg~~~~lli  178 (244)
T d1fp2a2         156 CLRILKKCKEAVTNDGKRGKVTI  178 (244)
T ss_dssp             HHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             HHHHHHHHHHHcCcccCCcEEEE
Confidence             48899999999998   65654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=3.4e-10  Score=93.50  Aligned_cols=82  Identities=13%  Similarity=0.214  Sum_probs=64.8

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      .+.+|||+|||+|..+..++     .+|+++|+|+               .++.++.+|+.. ++++..||+|+|+--..
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI  186 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred             cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence            45789999999999988887     5899999997               468888999865 34567999999973321


Q ss_pred             -------------CC-------------CHHHHHHHHHHccCCCCEEEc
Q 027441          201 -------------GI-------------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 -------------~~-------------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                                   |-             ....++.++.++|+|||.|++
T Consensus       187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l  235 (274)
T d2b3ta1         187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL  235 (274)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence                         11             123688999999999999985

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.94  E-value=1.1e-10  Score=88.22  Aligned_cols=94  Identities=9%  Similarity=0.013  Sum_probs=67.2

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCC-CCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSN-TPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~-lp~~~~  188 (223)
                      +.+...|...-.+.+|||+|||+|.++..++    .+|+++|.++                .++.++.+|+.. ++....
T Consensus         3 e~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~   82 (152)
T d2esra1           3 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG   82 (152)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred             HHHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccccc
Confidence            4566777765578999999999999987654    5899999996                346677888755 344568


Q ss_pred             ceeEEEEcccccCCCHHHHHHHHH--HccCCCCEEEc
Q 027441          189 SVDVAVFCLSLMGINFPNYLQEAQ--RVLKPRGEEQI  223 (223)
Q Consensus       189 sfD~Vi~~~~l~~~d~~~~l~e~~--rvLkpgG~lvi  223 (223)
                      +||+|++.--+..-.....+..+.  ++|+|||.+++
T Consensus        83 ~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iii  119 (152)
T d2esra1          83 RFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVC  119 (152)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEE
Confidence            899998764322112335555443  67999999875

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=4.4e-09  Score=81.49  Aligned_cols=93  Identities=18%  Similarity=0.219  Sum_probs=70.7

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----CCCcEEEccCCCCC--------CCCCceeE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDV  192 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----~~~~~~~~d~~~lp--------~~~~sfD~  192 (223)
                      .|.+......++.+||||||++|.|++++.      ..|+++|+.+    .++.++.+|+.+..        +....||+
T Consensus        12 EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~Dl   91 (180)
T d1ej0a_          12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQV   91 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeE
Confidence            344444444578999999999999999876      4699999998    46678888886532        23567999


Q ss_pred             EEEcccccCC-CH-----------HHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-NF-----------PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-d~-----------~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++-++..-. +.           ...+.-+.++|++||.|++
T Consensus        92 VlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~  134 (180)
T d1ej0a_          92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV  134 (180)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence            9999887644 21           1677778899999999985

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.86  E-value=1.9e-09  Score=88.27  Aligned_cols=79  Identities=15%  Similarity=0.194  Sum_probs=63.8

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .++.+|||+|||+|.++..++    .+|+++|+++                ..+.++.+|+..++. .+.||.|++....
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p~  184 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV  184 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCCC
Confidence            378999999999999988776    4899999997                357788999988764 5789999875331


Q ss_pred             cCCCHHHHHHHHHHccCCCCEEE
Q 027441          200 MGINFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       200 ~~~d~~~~l~e~~rvLkpgG~lv  222 (223)
                         ....++.++.++|+|||+|.
T Consensus       185 ---~~~~~l~~a~~~l~~gG~lh  204 (260)
T d2frna1         185 ---RTHEFIPKALSIAKDGAIIH  204 (260)
T ss_dssp             ---SGGGGHHHHHHHEEEEEEEE
T ss_pred             ---chHHHHHHHHhhcCCCCEEE
Confidence               23467888999999999984

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.83  E-value=8.1e-10  Score=93.05  Aligned_cols=83  Identities=13%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             CCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC----CCCCCCceeEEEEccc
Q 027441          141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN----TPLNSSSVDVAVFCLS  198 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~~  198 (223)
                      .+.+|||++||+|.++..++   .+|+++|+|+               .++.++.+|+.+    ++....+||+|++.--
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP  224 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  224 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence            67899999999999998886   6899999997               456788888754    3445678999997542


Q ss_pred             ccCC----------CHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGI----------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~----------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -...          +...++..+.++|+|||+|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~  259 (318)
T d1wxxa2         225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT  259 (318)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            2111          344788899999999999874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=1.3e-09  Score=85.38  Aligned_cols=94  Identities=20%  Similarity=0.394  Sum_probs=73.4

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCC-----C
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNT-----P  184 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~l-----p  184 (223)
                      ++.+++++... ++..|||++||+|.++..+.     .+|+|+|.++              .++.++.+++.++     .
T Consensus        12 l~evi~~l~~~-~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~   90 (192)
T d1m6ya2          12 VREVIEFLKPE-DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   90 (192)
T ss_dssp             HHHHHHHHCCC-TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHHhhCCC-CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence            45678888765 78999999999999988876     5899999997              3567778877654     3


Q ss_pred             CCCCceeEEEEccccc--CC--------CHHHHHHHHHHccCCCCEEEc
Q 027441          185 LNSSSVDVAVFCLSLM--GI--------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 ~~~~sfD~Vi~~~~l~--~~--------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +..++||.|+....+.  .+        .....|..+.++|+|||.+++
T Consensus        91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i  139 (192)
T d1m6ya2          91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV  139 (192)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred             cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence            4468899998776552  11        234889999999999999875

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=1.5e-09  Score=86.42  Aligned_cols=91  Identities=8%  Similarity=0.098  Sum_probs=65.5

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-C----
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P----  184 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p----  184 (223)
                      +...+... +..+|||||||+|..+..++      ++|+++|+++                .++.++.+|..+. |    
T Consensus        48 L~~lv~~~-kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~  126 (214)
T d2cl5a1          48 MDAVIREY-SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK  126 (214)
T ss_dssp             HHHHHHHH-CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHH
T ss_pred             HHHHHHhh-CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhh
Confidence            33334444 56899999999999888886      4799999997                3577888887542 2    


Q ss_pred             -CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          185 -LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 -~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       +..+.||+|+....-........+.+..++|+|||++++
T Consensus       127 ~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         127 KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cccccccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence             345789999976432221233467788899999999874

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.76  E-value=1.4e-09  Score=91.76  Aligned_cols=84  Identities=13%  Similarity=0.059  Sum_probs=64.5

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCC----CCCCCCceeEEEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSN----TPLNSSSVDVAVF  195 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~----lp~~~~sfD~Vi~  195 (223)
                      .++.+|||+|||+|.++..++    .+|+++|+++                .++.++.+|+..    ++....+||+|++
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            368999999999999999876    4799999997                345678888754    3345678999997


Q ss_pred             cccccCC----------CHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGI----------NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~----------d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .--....          +...++..+.++|+|||+|++
T Consensus       224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~  261 (324)
T d2as0a2         224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT  261 (324)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence            5432211          245788999999999999874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.74  E-value=7.4e-09  Score=81.26  Aligned_cols=56  Identities=20%  Similarity=0.270  Sum_probs=46.6

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .+.+|||+|||+|.++..++    .+|+|+|+++          .++.++.+|+..++   +.||+|++.--+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf  117 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF  117 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence            67899999999999876654    5799999997          57889999998765   679999987443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.2e-08  Score=81.30  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=69.3

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CC---
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP---  184 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp---  184 (223)
                      .++..|.......+|||||||+|+.+.+++      ++|+.+|+++                ..+.+..+|+.+ ++   
T Consensus        49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~  128 (219)
T d2avda1          49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL  128 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhh
Confidence            344444444467999999999999998887      4899999998                456777887633 21   


Q ss_pred             --CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          185 --LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 --~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                        ...++||+|+....  +-....++..+.++|+|||++++
T Consensus       129 ~~~~~~~fD~ifiD~d--k~~y~~~~~~~~~lL~~GGvii~  167 (219)
T d2avda1         129 AAGEAGTFDVAVVDAD--KENCSAYYERCLQLLRPGGILAV  167 (219)
T ss_dssp             HTTCTTCEEEEEECSC--STTHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhcccCCccEEEEeCC--HHHHHHHHHHHHHHhcCCcEEEE
Confidence              24678999997643  33677889999999999999985

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.70  E-value=6.8e-09  Score=87.25  Aligned_cols=87  Identities=9%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             hccCCCCeEEEECCcchHHHHHhc----CceEEEecCC-----------------CCCcEEEccCCCC----CCCCCcee
Q 027441          137 KDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNT----PLNSSSVD  191 (223)
Q Consensus       137 ~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------------~~~~~~~~d~~~l----p~~~~sfD  191 (223)
                      ....++.+|||+.||+|.++..++    .+|+++|+++                 .++.++.+|+...    .-....||
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             HHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence            444478999999999999988765    4799999997                 2456788887442    22356899


Q ss_pred             EEEEccc--------ccCC--CHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLS--------LMGI--NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~--------l~~~--d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|++.--        +...  +...++..+.++|+|||+|++
T Consensus       220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~  261 (317)
T d2b78a2         220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIA  261 (317)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            9997421        1111  456899999999999999974

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=1.2e-08  Score=79.00  Aligned_cols=94  Identities=7%  Similarity=0.055  Sum_probs=67.6

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCC-CCCCCCc
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSS  189 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~-lp~~~~s  189 (223)
                      +.+...|...-.+.+|||++||+|.++..++    .+|+.+|.++               .+..++.+|+.. +......
T Consensus        32 e~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~  111 (183)
T d2fpoa1          32 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTP  111 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCC
T ss_pred             HHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccc
Confidence            3444555433367899999999999998655    4799999997               455667777644 3335678


Q ss_pred             eeEEEEcccccCCCHHHHHHHHHH--ccCCCCEEEc
Q 027441          190 VDVAVFCLSLMGINFPNYLQEAQR--VLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~~~d~~~~l~e~~r--vLkpgG~lvi  223 (223)
                      ||+|++.--...-..+.++..+..  .|+|+|++++
T Consensus       112 fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIii  147 (183)
T d2fpoa1         112 HNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYV  147 (183)
T ss_dssp             EEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEE
Confidence            999998766544455667766654  6999999875

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.61  E-value=1.4e-08  Score=77.82  Aligned_cols=93  Identities=10%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             HHHHHHHhcc-CCCCeEEEECCcchHHHHHhc---CceEEEecCCC--------------CCcEEEccCCC----CCCCC
Q 027441          130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSN----TPLNS  187 (223)
Q Consensus       130 ~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~--------------~~~~~~~d~~~----lp~~~  187 (223)
                      +.+.++|... ..+.+|||+|||+|.++..++   .+|+++|.++.              ...+...+...    .....
T Consensus        29 e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~  108 (171)
T d1ws6a1          29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQG  108 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTT
T ss_pred             HHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccC
Confidence            4555555532 367899999999999888765   57899999971              12233333221    12345


Q ss_pred             CceeEEEEcccccCCCHHHHHHHH--HHccCCCCEEEc
Q 027441          188 SSVDVAVFCLSLMGINFPNYLQEA--QRVLKPRGEEQI  223 (223)
Q Consensus       188 ~sfD~Vi~~~~l~~~d~~~~l~e~--~rvLkpgG~lvi  223 (223)
                      ..||+|++.--++ .+....+.++  ..+|+|||++++
T Consensus       109 ~~fD~If~DPPY~-~~~~~~l~~l~~~~ll~~~g~ivi  145 (171)
T d1ws6a1         109 ERFTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             CCEEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred             CccceeEEccccc-cCHHHHHHHHHHcCCcCCCeEEEE
Confidence            7899999854322 2333334443  357999999875

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.57  E-value=8.2e-08  Score=75.31  Aligned_cols=97  Identities=15%  Similarity=0.220  Sum_probs=67.9

Q ss_pred             CCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCCCCC------cEEEccCCCCCCCCCceeE
Q 027441          125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVSNDP------SVIACDMSNTPLNSSSVDV  192 (223)
Q Consensus       125 p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~~~------~~~~~d~~~lp~~~~sfD~  192 (223)
                      |....+.+++.+... ++.+|||.|||+|.++..+.      ..++|+|+++...      .++.+|....+ ....||+
T Consensus         4 P~~i~~~m~~l~~~~-~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~   81 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAP-RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDL   81 (223)
T ss_dssp             CHHHHHHHHHHCCCC-TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEE
T ss_pred             CHHHHHHHHHhcCCC-CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccc-cccccce
Confidence            344455666665544 77899999999999877664      4599999998433      34555654443 3478999


Q ss_pred             EEEcccccCC-----------------------------C-HHHHHHHHHHccCCCCEEEc
Q 027441          193 AVFCLSLMGI-----------------------------N-FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       193 Vi~~~~l~~~-----------------------------d-~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |++.-.+...                             + ...++..+.+.|+|||.+++
T Consensus        82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            9988665321                             1 23667888999999999864

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.57  E-value=1.4e-08  Score=84.80  Aligned_cols=94  Identities=12%  Similarity=0.074  Sum_probs=67.0

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-----------------CCCcEEEccCCCC----CC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------------NDPSVIACDMSNT----PL  185 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-----------------~~~~~~~~d~~~l----p~  185 (223)
                      ..+.+.+.....+.+|||+.||+|.++..++   ++|++||+|.                 ..+.|+++|+..+    ..
T Consensus       121 ~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~  200 (309)
T d2igta1         121 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER  200 (309)
T ss_dssp             HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhh
Confidence            3455566655577899999999999998877   5899999996                 2467888887542    12


Q ss_pred             CCCceeEEEEc---cccc-----C-C--CHHHHHHHHHHccCCCCEEEc
Q 027441          186 NSSSVDVAVFC---LSLM-----G-I--NFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       186 ~~~sfD~Vi~~---~~l~-----~-~--d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ....||+||+.   ++-.     + +  +...++..+.++|+|||.+++
T Consensus       201 ~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll  249 (309)
T d2igta1         201 RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV  249 (309)
T ss_dssp             HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred             cCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence            35789999973   2111     1 1  345677788899999987553

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.56  E-value=3.9e-08  Score=77.22  Aligned_cols=57  Identities=23%  Similarity=0.323  Sum_probs=44.8

Q ss_pred             CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      .+.+|||+|||+|.++..++    .+|+|+|+++              ....++.+|+..+   +..||+|++.--+.
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFG  120 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCccc
Confidence            67899999999999887665    4799999997              3456777777665   46799999876554

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.53  E-value=3.4e-08  Score=76.39  Aligned_cols=94  Identities=12%  Similarity=0.036  Sum_probs=69.5

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCC----CC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT----PL  185 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~l----p~  185 (223)
                      +.+...|.....+.+|||+.||+|.++..++    .+|+++|.++                .++.++.+|+..+    .-
T Consensus        30 ealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~  109 (182)
T d2fhpa1          30 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE  109 (182)
T ss_dssp             HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc
Confidence            5566667655578999999999999998765    4799999996                3566778887542    12


Q ss_pred             CCCceeEEEEcccccCCCHHHHHHHHHH--ccCCCCEEEc
Q 027441          186 NSSSVDVAVFCLSLMGINFPNYLQEAQR--VLKPRGEEQI  223 (223)
Q Consensus       186 ~~~sfD~Vi~~~~l~~~d~~~~l~e~~r--vLkpgG~lvi  223 (223)
                      ....||+|++.--+..-+....+..+..  .|+|+|++++
T Consensus       110 ~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~  149 (182)
T d2fhpa1         110 EKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVC  149 (182)
T ss_dssp             TTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEE
Confidence            3467999997765444456677777754  6999999875

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.47  E-value=1.3e-07  Score=75.66  Aligned_cols=90  Identities=13%  Similarity=0.072  Sum_probs=67.9

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CC----
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP----  184 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp----  184 (223)
                      ++..|.......+||+||+++|+.+.+++      ++|+.+|+++                ..+.++.+++.. ++    
T Consensus        50 ~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~  129 (227)
T d1susa1          50 FLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIK  129 (227)
T ss_dssp             HHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHh
Confidence            44444333367899999999999888876      5899999998                346677777633 11    


Q ss_pred             --CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          185 --LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 --~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                        ...++||+|+.-..  +-....++..+.++|+|||++++
T Consensus       130 ~~~~~~~fD~iFiDa~--k~~y~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1         130 DEKNHGSYDFIFVDAD--KDNYLNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             CGGGTTCBSEEEECSC--STTHHHHHHHHHHHBCTTCCEEE
T ss_pred             ccccCCceeEEEeccc--hhhhHHHHHHHHhhcCCCcEEEE
Confidence              13568999997642  34678999999999999999975

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.41  E-value=8.9e-08  Score=77.42  Aligned_cols=73  Identities=19%  Similarity=0.197  Sum_probs=58.4

Q ss_pred             chHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCce
Q 027441          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       127 ~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      ...+.|++.+... ++..|||||||+|.++..|+   .+|+++|+++             .++.++.+|+..++++...+
T Consensus        16 ~ii~kIv~~~~~~-~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~   94 (245)
T d1yuba_          16 KVLNQIIKQLNLK-ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             TTHHHHHHHCCCC-SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHHHhcCCC-CCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence            3456677766544 77899999999999999887   6899999997             35678889999999888888


Q ss_pred             eEEEEccccc
Q 027441          191 DVAVFCLSLM  200 (223)
Q Consensus       191 D~Vi~~~~l~  200 (223)
                      +.|++..-.+
T Consensus        95 ~~vv~NLPY~  104 (245)
T d1yuba_          95 YKIVGNIPYH  104 (245)
T ss_dssp             EEEEEECCSS
T ss_pred             eeEeeeeehh
Confidence            8777776643

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.40  E-value=3.7e-07  Score=74.74  Aligned_cols=91  Identities=15%  Similarity=0.163  Sum_probs=58.8

Q ss_pred             HHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCC-CCCCCce
Q 027441          132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT-PLNSSSV  190 (223)
Q Consensus       132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~l-p~~~~sf  190 (223)
                      +++++... ...+|||+|||+|..+..++    .+|+++|+|+                ..+.+..+|.... +...+.|
T Consensus       102 ~~~~~~~~-~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~f  180 (271)
T d1nv8a_         102 ALELIRKY-GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASI  180 (271)
T ss_dssp             HHHHHHHH-TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTC
T ss_pred             hhhhhccc-cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcc
Confidence            33344434 45789999999999877776    5899999997                2334556666542 3334789


Q ss_pred             eEEEEcccc-------c-CC--CHH----------HHH-HHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSL-------M-GI--NFP----------NYL-QEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l-------~-~~--d~~----------~~l-~e~~rvLkpgG~lvi  223 (223)
                      |+|++.--.       . -+  +|.          .++ .-+.+.|+|||+|++
T Consensus       181 DlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~  234 (271)
T d1nv8a_         181 EMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  234 (271)
T ss_dssp             CEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             cEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence            999988321       1 00  111          122 225688999999875

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=3.7e-07  Score=71.82  Aligned_cols=79  Identities=9%  Similarity=0.085  Sum_probs=65.3

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM  200 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~  200 (223)
                      ++.+|||||||.|.-+..++     .+|+.+|.+.               .++.++..+++++.. ..+||+|++..+  
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~V~sRA~--  141 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVISRAF--  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEECSCS--
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-ccccceehhhhh--
Confidence            56799999999998777766     4799999886               577888888888753 568999998766  


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                       .+.+.++.-+.+.+++||.+++
T Consensus       142 -~~~~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         142 -ASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             -SSHHHHHHHHTTSEEEEEEEEE
T ss_pred             -cCHHHHHHHHHHhcCCCcEEEE
Confidence             3678899999999999999874

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.28  E-value=2.2e-06  Score=68.49  Aligned_cols=87  Identities=13%  Similarity=0.050  Sum_probs=58.4

Q ss_pred             HHhccCCCCeEEEECCcchHHHHHhc---------CceEEEecCC----------CCCcEEEccCCCCC----CCCCcee
Q 027441          135 WLKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS----------NDPSVIACDMSNTP----LNSSSVD  191 (223)
Q Consensus       135 ~l~~~~~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~----------~~~~~~~~d~~~lp----~~~~sfD  191 (223)
                      .+... ++.+||+||++.|..+..++         ++|+++|+.+          .++.++.+|..+..    +....+|
T Consensus        75 li~~~-KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~d  153 (232)
T d2bm8a1          75 MLWEL-RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHP  153 (232)
T ss_dssp             HHHHH-CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             HHHHh-CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCC
Confidence            34444 56889999999998655443         5899999975          56778888876532    2345678


Q ss_pred             EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|+.-.. |+-+....--++.++|+|||+++|
T Consensus       154 lIfID~~-H~~~~v~~~~~~~~lLk~GG~iIv  184 (232)
T d2bm8a1         154 LIFIDNA-HANTFNIMKWAVDHLLEEGDYFII  184 (232)
T ss_dssp             EEEEESS-CSSHHHHHHHHHHHTCCTTCEEEE
T ss_pred             EEEEcCC-cchHHHHHHHHHhcccCcCCEEEE
Confidence            8776543 433222222246689999999886

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.24  E-value=2.6e-06  Score=68.29  Aligned_cols=82  Identities=13%  Similarity=0.114  Sum_probs=55.4

Q ss_pred             CCCCeEEEECCcchHHHHHhcC-----ceEEEecC------CCCC--------cEE-EccCCCCCCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDARLAKSVKN-----KVFSFDLV------SNDP--------SVI-ACDMSNTPLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la~-----~v~gvDis------~~~~--------~~~-~~d~~~lp~~~~sfD~Vi~~~~l  199 (223)
                      .+...|+|||||+|.|+.+++.     .|.|+|+-      |...        .+. ..|+.  -++...+|+|+|-.+-
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~--~l~~~~~D~vlcDm~e  142 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVF--FIPPERCDTLLCDIGE  142 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTT--TSCCCCCSEEEECCCC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHH--hcCCCcCCEEEeeCCC
Confidence            4678999999999999999972     45666663      1111        111 11222  2346789999999875


Q ss_pred             cCCCHH-------HHHHHHHHccCCCCEEEc
Q 027441          200 MGINFP-------NYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~~-------~~l~e~~rvLkpgG~lvi  223 (223)
                      ..-++.       .+|+-+.+.|+|||-|++
T Consensus       143 ss~~~~vd~~Rtl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         143 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence            432332       677788899999999875

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.21  E-value=3.8e-07  Score=76.12  Aligned_cols=83  Identities=14%  Similarity=0.149  Sum_probs=61.7

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------------CCCcEEEccCCCC-CCCCCceeEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------------NDPSVIACDMSNT-PLNSSSVDVAV  194 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------------~~~~~~~~d~~~l-p~~~~sfD~Vi  194 (223)
                      ...+||.||.|.|..+..+.     .+|+++|+++                    +++.++.+|+... .-.+..||+|+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence            56899999999999988775     4799999996                    3566777787442 22356899999


Q ss_pred             EcccccC--------CCHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLMG--------INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~~--------~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +...=.+        +--..++..+.+.|+|||+|++
T Consensus       157 ~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             EeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence            6542111        1124899999999999999874

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.20  E-value=3.1e-07  Score=75.38  Aligned_cols=84  Identities=13%  Similarity=0.072  Sum_probs=61.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc----CceEEEecCC-------------------------CCCcEEEccCCCCCCCCCce
Q 027441          140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------------------NDPSVIACDMSNTPLNSSSV  190 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------------------~~~~~~~~d~~~lp~~~~sf  190 (223)
                      +...+||.||+|.|..+..+.    .+|+++|+++                         +++.++.+|+..+--.+.+|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            366899999999999888776    4689999986                         23456677764321235789


Q ss_pred             eEEEEcccccC-----CCHHHHHHHHHHccCCCCEEEc
Q 027441          191 DVAVFCLSLMG-----INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       191 D~Vi~~~~l~~-----~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      |+|++-..-..     +--..+++.+.+.|+|||++++
T Consensus       151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~  188 (276)
T d1mjfa_         151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT  188 (276)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred             CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEE
Confidence            99997543221     1224899999999999999874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.16  E-value=1.8e-06  Score=71.89  Aligned_cols=82  Identities=21%  Similarity=0.180  Sum_probs=59.3

Q ss_pred             CCCeEEEECCcchHHHHHhc----------CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441          141 PSLVIADFGCGDARLAKSVK----------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFC  196 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la----------~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  196 (223)
                      ++.+|||.|||+|.++..+.          ..++|+|+++              ....+..+|..... ....||+|++.
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~vi~N  195 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVISD  195 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEEEE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-ccccccccccC
Confidence            56789999999999887663          2689999987              34455566654332 35789999998


Q ss_pred             ccccC--C----------------C-HHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMG--I----------------N-FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~--~----------------d-~~~~l~e~~rvLkpgG~lvi  223 (223)
                      --+..  .                + ...++..+.+.|+|||.+++
T Consensus       196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence            65421  1                0 22579999999999998764

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.8e-06  Score=67.10  Aligned_cols=60  Identities=8%  Similarity=0.003  Sum_probs=42.8

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCC------CCCCCceeEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNT------PLNSSSVDVA  193 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~l------p~~~~sfD~V  193 (223)
                      +..+|||||||+|..+..|+     .+++|+|+++                .++.+...+....      ...+..||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            45799999999999888877     4899999997                2334444433221      1235689999


Q ss_pred             EEccccc
Q 027441          194 VFCLSLM  200 (223)
Q Consensus       194 i~~~~l~  200 (223)
                      +|.--++
T Consensus       141 vsNPPY~  147 (250)
T d2h00a1         141 MCNPPFF  147 (250)
T ss_dssp             EECCCCC
T ss_pred             EecCccc
Confidence            9986655

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.12  E-value=1.1e-06  Score=70.35  Aligned_cols=66  Identities=12%  Similarity=0.111  Sum_probs=49.5

Q ss_pred             HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEE
Q 027441          131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAV  194 (223)
Q Consensus       131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi  194 (223)
                      .|++.+.. .++..|||||||+|.++..|+   .+|+++|+++             .++.++.+|+..++++......|+
T Consensus        12 ~iv~~~~~-~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv   90 (235)
T d1qama_          12 KIMTNIRL-NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIF   90 (235)
T ss_dssp             HHHTTCCC-CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEE
T ss_pred             HHHHhcCC-CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceee
Confidence            34443332 378999999999999999997   6899999986             567899999988877655444455


Q ss_pred             Ecc
Q 027441          195 FCL  197 (223)
Q Consensus       195 ~~~  197 (223)
                      +..
T Consensus        91 ~NL   93 (235)
T d1qama_          91 GNI   93 (235)
T ss_dssp             EEC
T ss_pred             eee
Confidence            443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.11  E-value=2.8e-06  Score=65.18  Aligned_cols=94  Identities=18%  Similarity=0.110  Sum_probs=63.3

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------C--CCcEEEccC---CCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N--DPSVIACDM---SNTPL  185 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~--~~~~~~~d~---~~lp~  185 (223)
                      +.+.+.|...-.+.+|||+-||+|.++....    ..|+.+|.+.               .  ...+...|+   .....
T Consensus        32 ealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~  111 (183)
T d2ifta1          32 ETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ  111 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC
T ss_pred             HHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccc
Confidence            4555555443367899999999999988876    5899999996               1  122333333   22233


Q ss_pred             CCCceeEEEEcccccCCCHHHHHHHHH--HccCCCCEEEc
Q 027441          186 NSSSVDVAVFCLSLMGINFPNYLQEAQ--RVLKPRGEEQI  223 (223)
Q Consensus       186 ~~~sfD~Vi~~~~l~~~d~~~~l~e~~--rvLkpgG~lvi  223 (223)
                      ....||+|++.=-...-....++..+.  ..|+++|++++
T Consensus       112 ~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liii  151 (183)
T d2ifta1         112 NQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYV  151 (183)
T ss_dssp             SSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEE
Confidence            456799999776654434556666665  47999999985

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.10  E-value=1.5e-06  Score=66.93  Aligned_cols=94  Identities=21%  Similarity=0.296  Sum_probs=71.1

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-----------CCCcEEEccCCCCC-----CCCCc
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTP-----LNSSS  189 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-----------~~~~~~~~d~~~lp-----~~~~s  189 (223)
                      ++.++++|... ++..++|..||.|.++..+.   .+|+|+|..+           .++.++..+..++.     +..+.
T Consensus         7 l~Evl~~l~~~-~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~   85 (182)
T d1wg8a2           7 YQEALDLLAVR-PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER   85 (182)
T ss_dssp             HHHHHHHHTCC-TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred             HHHHHHhcCCC-CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCc
Confidence            45677887765 88999999999999988887   6899999997           35566766665432     34577


Q ss_pred             eeEEEEccccc--CC-C-------HHHHHHHHHHccCCCCEEEc
Q 027441          190 VDVAVFCLSLM--GI-N-------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       190 fD~Vi~~~~l~--~~-d-------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +|.|++...+.  ++ +       ....|.....+|+|||.+++
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~i  129 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVV  129 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEE
Confidence            99999877554  22 2       12578888999999999875

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=1.8e-06  Score=71.33  Aligned_cols=83  Identities=13%  Similarity=0.115  Sum_probs=61.6

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCC-CCCCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  195 (223)
                      ...+||-||.|.|..+..+.     .+|+++|+++                   +++.++.+|+.. +.-....||+|++
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            56899999999999988886     4689999997                   456777777643 2223568999997


Q ss_pred             ccccc------CCCHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLM------GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~------~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...-.      ++--..++..+.+.|+|||+|++
T Consensus       169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~  202 (295)
T d1inla_         169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA  202 (295)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEE
Confidence            54322      22235899999999999999974

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.00  E-value=2.4e-06  Score=68.47  Aligned_cols=80  Identities=14%  Similarity=0.072  Sum_probs=62.6

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCC---CCceeEEEEcc
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SSSVDVAVFCL  197 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~---~~sfD~Vi~~~  197 (223)
                      ...+|+|||+|.|.-+..|+     .+|+-+|.+.               .++.++...++.+...   ...||+|++..
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            45789999999998777666     4789999886               5666777777654322   36899999886


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +   .+...++.-+.+.|++||.+++
T Consensus       150 v---a~l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         150 V---ARLSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             C---SCHHHHHHHHGGGEEEEEEEEE
T ss_pred             h---hCHHHHHHHHhhhcccCCEEEE
Confidence            5   3678999999999999999874

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.91  E-value=5e-06  Score=67.92  Aligned_cols=83  Identities=14%  Similarity=0.073  Sum_probs=62.7

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCC-CCCCCCceeEEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF  195 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  195 (223)
                      ...+||-||.|.|..+..+.     .+|+.+||++                   +++.++.+|+.. +--....||+|+.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~  154 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence            56899999999999998876     4789999997                   456677777743 2223578999997


Q ss_pred             ccccc-----CCCHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLM-----GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~-----~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -..-.     ++--..+++.+.++|+|||+++.
T Consensus       155 D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~  187 (274)
T d1iy9a_         155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA  187 (274)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCCCCcchhhccHHHHHHHHhhcCCCceEEE
Confidence            64321     11234899999999999999873

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.90  E-value=4.9e-06  Score=69.11  Aligned_cols=84  Identities=17%  Similarity=0.099  Sum_probs=58.3

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC-CCCCCceeEEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT-PLNSSSVDVAV  194 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l-p~~~~sfD~Vi  194 (223)
                      +...+||-||.|.|..+..+.     .+|+.+||.+                   +++.++.+|+... .-....||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            356899999999999998886     3789999986                   3445556665331 12357899999


Q ss_pred             Eccccc-----CCCHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLM-----GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~-----~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +-..--     ++--..++..+.+.|+|||++++
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~  218 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSS  218 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEE
Confidence            764322     11234889999999999999974

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=5e-06  Score=68.26  Aligned_cols=84  Identities=18%  Similarity=0.129  Sum_probs=61.2

Q ss_pred             CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCC-CCCCCCceeEEE
Q 027441          140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAV  194 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi  194 (223)
                      +...+||-||.|.|..+..+.     .+|+.+||.+                   +++.++.+|+.. +.-..+.||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            355899999999999988887     4788999986                   466777777643 222356899999


Q ss_pred             Eccccc-----CCCHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLM-----GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~-----~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +-..--     ++--..+++.+.+.|+|||+|++
T Consensus       157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~  190 (285)
T d2o07a1         157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC  190 (285)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred             EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEE
Confidence            764311     11223889999999999999974

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.85  E-value=6.9e-06  Score=67.56  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=62.1

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC--CCCCCceeEEE
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT--PLNSSSVDVAV  194 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l--p~~~~sfD~Vi  194 (223)
                      ...+||=||.|.|..+..+.     .+|+.+||++                   +++.++.+|....  ....+.||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            55899999999999999876     3689999986                   4566777776432  23356899999


Q ss_pred             Eccccc-----CCCHHHHHHHHHHccCCCCEEEc
Q 027441          195 FCLSLM-----GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       195 ~~~~l~-----~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .-..--     ++--..+++.+.+.|+|||++++
T Consensus       160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~  193 (290)
T d1xj5a_         160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT  193 (290)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred             EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEE
Confidence            654321     11224899999999999999974

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.76  E-value=2.3e-05  Score=65.01  Aligned_cols=93  Identities=15%  Similarity=0.172  Sum_probs=64.1

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS  188 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~  188 (223)
                      ..+...+....++.+|||++||+|.=+..++      +.++++|+++               .++.+...|...++..+.
T Consensus       105 S~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~  184 (313)
T d1ixka_         105 SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNV  184 (313)
T ss_dssp             HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCC
T ss_pred             ccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence            3444444444588999999999998555554      4699999997               345555566666666678


Q ss_pred             ceeEEEE----ccc--ccCC-------CH----------HHHHHHHHHccCCCCEEE
Q 027441          189 SVDVAVF----CLS--LMGI-------NF----------PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       189 sfD~Vi~----~~~--l~~~-------d~----------~~~l~e~~rvLkpgG~lv  222 (223)
                      .||.|++    +..  +...       ..          ..+|..+.+.|+|||+|+
T Consensus       185 ~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lV  241 (313)
T d1ixka_         185 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILV  241 (313)
T ss_dssp             CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEE
Confidence            8999984    222  1110       11          178899999999999886

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.71  E-value=3.7e-05  Score=66.16  Aligned_cols=98  Identities=18%  Similarity=0.247  Sum_probs=70.1

Q ss_pred             CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc------------------CceEEEecCC---------------
Q 027441          124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------------------NKVFSFDLVS---------------  170 (223)
Q Consensus       124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------------------~~v~gvDis~---------------  170 (223)
                      -|...++.+.+.+... ++.+|||-+||+|.+...+.                  ..++|+|+++               
T Consensus       146 TP~~Iv~~mv~ll~~~-~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~  224 (425)
T d2okca1         146 TPRPLIQAMVDCINPQ-MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI  224 (425)
T ss_dssp             CCHHHHHHHHHHHCCC-TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             cchhhhHhhheeccCc-ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC
Confidence            4667777777776654 67899999999999876553                  2488999986               


Q ss_pred             --CCCcEEEccCCCCCCCCCceeEEEEcccccCC-----------------C-HHHHHHHHHHccCCCCEEEc
Q 027441          171 --NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-----------------N-FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       171 --~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-----------------d-~~~~l~e~~rvLkpgG~lvi  223 (223)
                        ....+...|....+ ....||+|++.--+...                 + ...++..+...|+|||.+++
T Consensus       225 ~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i  296 (425)
T d2okca1         225 GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  296 (425)
T ss_dssp             CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence              23345556654433 35789999988665311                 0 12699999999999998764

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=0.00011  Score=59.97  Aligned_cols=96  Identities=11%  Similarity=-0.015  Sum_probs=60.8

Q ss_pred             chHHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCCCC--------------CcEEEccCCCC--CC
Q 027441          127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSND--------------PSVIACDMSNT--PL  185 (223)
Q Consensus       127 ~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~~--------------~~~~~~d~~~l--p~  185 (223)
                      .....+...+....++.+|||+++|+|.=+..++     ..|+++|+++.+              ...+..+....  +.
T Consensus        88 D~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~  167 (284)
T d1sqga2          88 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC  167 (284)
T ss_dssp             CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHH
T ss_pred             cccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhc
Confidence            3334444444455588999999999999655554     579999999832              22222222221  12


Q ss_pred             CCCceeEEEE----cccccC--C-CH----------------HHHHHHHHHccCCCCEEE
Q 027441          186 NSSSVDVAVF----CLSLMG--I-NF----------------PNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       186 ~~~sfD~Vi~----~~~l~~--~-d~----------------~~~l~e~~rvLkpgG~lv  222 (223)
                      ....||.|++    +..-..  - +.                ..+|..+.+.|+|||+|+
T Consensus       168 ~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lv  227 (284)
T d1sqga2         168 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLV  227 (284)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEE
Confidence            3567999993    322211  1 11                188899999999999986

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00011  Score=61.42  Aligned_cols=66  Identities=15%  Similarity=0.314  Sum_probs=49.8

Q ss_pred             HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCC----CCCC
Q 027441          130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNT----PLNS  187 (223)
Q Consensus       130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~l----p~~~  187 (223)
                      +.+.+++... ++.+|||+-||.|.++..|+   .+|+|+|+++               .++.|+.++++..    +...
T Consensus       202 ~~v~~~~~~~-~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~  280 (358)
T d1uwva2         202 ARALEWLDVQ-PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK  280 (358)
T ss_dssp             HHHHHHHTCC-TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGT
T ss_pred             HHHHHhhccC-CCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhh
Confidence            3444445433 67899999999999999998   5899999996               5778888888652    2234


Q ss_pred             CceeEEEEc
Q 027441          188 SSVDVAVFC  196 (223)
Q Consensus       188 ~sfD~Vi~~  196 (223)
                      ..||+|+..
T Consensus       281 ~~~d~vilD  289 (358)
T d1uwva2         281 NGFDKVLLD  289 (358)
T ss_dssp             TCCSEEEEC
T ss_pred             ccCceEEeC
Confidence            678999865

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=3.6e-05  Score=61.88  Aligned_cols=56  Identities=16%  Similarity=0.240  Sum_probs=43.7

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCC
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPL  185 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~  185 (223)
                      .+.|.+.+... ++..|||||||+|.++..|+   .+|+++|+++             .++.++.+|+..+++
T Consensus        10 ~~~Iv~~~~~~-~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          10 IDSIVSAINPQ-KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHCCC-TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred             HHHHHHhcCCC-CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence            45666666544 67899999999999999997   6899999996             346677888866543

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00014  Score=59.18  Aligned_cols=67  Identities=24%  Similarity=0.307  Sum_probs=49.5

Q ss_pred             HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441          129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS  189 (223)
Q Consensus       129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s  189 (223)
                      .+.|.+.+... ++..|||||+|+|.++..|+   .+|+++++++                .++.++.+|+...+++.  
T Consensus        10 ~~kIv~~~~~~-~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~--   86 (278)
T d1zq9a1          10 INSIIDKAALR-PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF--   86 (278)
T ss_dssp             HHHHHHHTCCC-TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC--
T ss_pred             HHHHHHHhCCC-CCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh--
Confidence            34555655433 67899999999999999997   6899999986                25678889987776543  


Q ss_pred             eeEEEEccc
Q 027441          190 VDVAVFCLS  198 (223)
Q Consensus       190 fD~Vi~~~~  198 (223)
                      ++.||+..-
T Consensus        87 ~~~vV~NLP   95 (278)
T d1zq9a1          87 FDTCVANLP   95 (278)
T ss_dssp             CSEEEEECC
T ss_pred             hhhhhcchH
Confidence            455665543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00046  Score=56.33  Aligned_cols=62  Identities=18%  Similarity=0.203  Sum_probs=44.2

Q ss_pred             HHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCC---CCce
Q 027441          135 WLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SSSV  190 (223)
Q Consensus       135 ~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~---~~sf  190 (223)
                      ++....++.+|||++||+|.-+..++      ..|+++|+++               .++.+...|...++..   ...|
T Consensus        88 ~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~f  167 (293)
T d2b9ea1          88 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV  167 (293)
T ss_dssp             HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred             cccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccccccee
Confidence            33344478999999999999666654      4799999996               4566667776655432   2579


Q ss_pred             eEEEEc
Q 027441          191 DVAVFC  196 (223)
Q Consensus       191 D~Vi~~  196 (223)
                      |.|++-
T Consensus       168 D~VL~D  173 (293)
T d2b9ea1         168 HYILLD  173 (293)
T ss_dssp             EEEEEC
T ss_pred             eEEeec
Confidence            999843

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.7e-05  Score=65.51  Aligned_cols=99  Identities=17%  Similarity=0.243  Sum_probs=64.4

Q ss_pred             CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----------------------CceEEEecCCCC--------
Q 027441          124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----------------------NKVFSFDLVSND--------  172 (223)
Q Consensus       124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----------------------~~v~gvDis~~~--------  172 (223)
                      -|...++.|...+... ++.+|+|-+||+|.+...+.                       ..++|+|+++..        
T Consensus       148 TP~~Iv~~mv~ll~~~-~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl  226 (524)
T d2ar0a1         148 TPRPLIKTIIHLLKPQ-PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC  226 (524)
T ss_dssp             CCHHHHHHHHHHHCCC-TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred             cccchhHhhhhcccCc-cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence            4666777777776654 67899999999999876432                       247899998611        


Q ss_pred             ------C------cEEEccCCCC-CCCCCceeEEEEcccccCC--------------C-HHHHHHHHHHccCCCCEEEc
Q 027441          173 ------P------SVIACDMSNT-PLNSSSVDVAVFCLSLMGI--------------N-FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       173 ------~------~~~~~d~~~l-p~~~~sfD~Vi~~~~l~~~--------------d-~~~~l~e~~rvLkpgG~lvi  223 (223)
                            .      .+...+.... ......||+|++.--+.-.              + ...++..+.+.|+|||++.|
T Consensus       227 ~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ai  305 (524)
T d2ar0a1         227 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV  305 (524)
T ss_dssp             HTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             HhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEE
Confidence                  0      1111221111 1134679999988655311              1 12699999999999999864

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.99  E-value=0.00044  Score=58.02  Aligned_cols=82  Identities=21%  Similarity=0.292  Sum_probs=56.5

Q ss_pred             CCeEEEECCcchHHHHHhcC---------------------ceEEEecCCC----------------CCcE---EEccCC
Q 027441          142 SLVIADFGCGDARLAKSVKN---------------------KVFSFDLVSN----------------DPSV---IACDMS  181 (223)
Q Consensus       142 ~~~ILDiGcG~G~~a~~la~---------------------~v~gvDis~~----------------~~~~---~~~d~~  181 (223)
                      ..+|.|+||.+|..+..+..                     +|+--|+-..                ...|   +.+.+-
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence            36799999999996654331                     2444454430                0112   223444


Q ss_pred             CCCCCCCceeEEEEcccccCCC----------------------------------HHHHHHHHHHccCCCCEEEc
Q 027441          182 NTPLNSSSVDVAVFCLSLMGIN----------------------------------FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       182 ~lp~~~~sfD~Vi~~~~l~~~d----------------------------------~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .--||+++.++++++.++||+.                                  +..+|..=.+-|+|||.+++
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl  207 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            4447899999999999999961                                  34788888899999999985

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.29  E-value=0.0011  Score=55.97  Aligned_cols=80  Identities=13%  Similarity=-0.000  Sum_probs=55.0

Q ss_pred             CCCeEEEECCcchHHHHHhc-----CceEEEecCCCC------------------------------CcEEEccCCCCC-
Q 027441          141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVSND------------------------------PSVIACDMSNTP-  184 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~~------------------------------~~~~~~d~~~lp-  184 (223)
                      .+.+|||..||+|..+...+     ..|++.|+++.-                              +.+...|+..+. 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            56899999999999888654     479999999711                              111222221111 


Q ss_pred             CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          185 LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       185 ~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -....||+|..--   +-.+..+|..+.+.++.||+|.|
T Consensus       125 ~~~~~fDvIDiDP---fGs~~pfldsAi~a~~~~Gll~v  160 (375)
T d2dula1         125 ERHRYFHFIDLDP---FGSPMEFLDTALRSAKRRGILGV  160 (375)
T ss_dssp             HSTTCEEEEEECC---SSCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhcCcCCcccCCC---CCCcHHHHHHHHHHhccCCEEEE
Confidence            1235699887543   22556899999999999999975

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.97  E-value=0.007  Score=45.93  Aligned_cols=85  Identities=24%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             cCCCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCcE-------EEccCCCCCC--------CCCceeEEEEcc
Q 027441          139 HSPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSV-------IACDMSNTPL--------NSSSVDVAVFCL  197 (223)
Q Consensus       139 ~~~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~~-------~~~d~~~lp~--------~~~sfD~Vi~~~  197 (223)
                      ..++.+||-+|||. |.++..++     .+|+++|.++...++       ...+....++        ....+|+++-+-
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v  102 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV  102 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence            34889999999998 44444444     479999998732111       1112211111        234689999654


Q ss_pred             ccc------C----CCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLM------G----INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~------~----~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ...      +    ......+..+.++++|||.+++
T Consensus       103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~  138 (195)
T d1kola2         103 GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI  138 (195)
T ss_dssp             CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred             cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEE
Confidence            321      1    1345899999999999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.56  E-value=0.024  Score=41.33  Aligned_cols=79  Identities=9%  Similarity=0.081  Sum_probs=50.4

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCc---------EEEccCCCCC----------CCCCceeEEEE
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPS---------VIACDMSNTP----------LNSSSVDVAVF  195 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~---------~~~~d~~~lp----------~~~~sfD~Vi~  195 (223)
                      .++.+||-+|||+ |.++..++    .+|+++|.++.+..         .+..+.....          .....+|+|+-
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid  104 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  104 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence            4778999999995 44444444    68999999873221         1111211111          01245888885


Q ss_pred             cccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +-.     -+..+..+.++|+|+|.+++
T Consensus       105 ~~g-----~~~~~~~a~~~~~~~G~iv~  127 (170)
T d1e3ja2         105 CSG-----NEKCITIGINITRTGGTLML  127 (170)
T ss_dssp             CSC-----CHHHHHHHHHHSCTTCEEEE
T ss_pred             cCC-----ChHHHHHHHHHHhcCCceEE
Confidence            443     26788999999999999874

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.40  E-value=0.011  Score=43.95  Aligned_cols=80  Identities=14%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             cCCCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEcc
Q 027441          139 HSPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCL  197 (223)
Q Consensus       139 ~~~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~  197 (223)
                      ..++.+||=+|||. |.++..++     .+|+++|.++.+..+       ...|..+-+        .....||+|+-+-
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            34788899999997 55555554     379999998722111       111211111        1124599988655


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      ..     +..+....++|+|+|.+++
T Consensus       105 g~-----~~~~~~a~~~~~~~G~iv~  125 (174)
T d1jqba2         105 GG-----SETLSQAVKMVKPGGIISN  125 (174)
T ss_dssp             SC-----TTHHHHHHHHEEEEEEEEE
T ss_pred             CC-----HHHHHHHHHHHhcCCEEEE
Confidence            42     4678888999999999874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.19  E-value=0.0087  Score=44.47  Aligned_cols=79  Identities=13%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCcE-------EEccCCCCC-----------CCCCceeEEEE
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSV-------IACDMSNTP-----------LNSSSVDVAVF  195 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~~-------~~~d~~~lp-----------~~~~sfD~Vi~  195 (223)
                      .++.+||-+|||. |.++..++     .+|+++|.++.+.++       .+.+..+..           .....||+|+-
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid  106 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE  106 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEee
Confidence            4679999999985 55555554     379999998732211       112222211           11345999985


Q ss_pred             cccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          196 CLSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       196 ~~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      +-..     +..+..+.++|+|||.+++
T Consensus       107 ~vG~-----~~~~~~a~~~l~~~G~iv~  129 (182)
T d1vj0a2         107 ATGD-----SRALLEGSELLRRGGFYSV  129 (182)
T ss_dssp             CSSC-----TTHHHHHHHHEEEEEEEEE
T ss_pred             cCCc-----hhHHHHHHHHhcCCCEEEE
Confidence            5432     4578889999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.0023  Score=47.31  Aligned_cols=81  Identities=15%  Similarity=0.186  Sum_probs=49.7

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCc---------EEEc-cCCCC-CCCCCceeEEEEcccccCCC
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPS---------VIAC-DMSNT-PLNSSSVDVAVFCLSLMGIN  203 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~---------~~~~-d~~~l-p~~~~sfD~Vi~~~~l~~~d  203 (223)
                      .++.+||-+|||. |.++..++    .+|+++|.++...+         ++.. +..+. .-..+.||+|+.+....+- 
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~-  104 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD-  104 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT-
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc-
Confidence            4789999999984 55555444    68999999984332         2211 11111 0123579998876443221 


Q ss_pred             HHHHHHHHHHccCCCCEEEc
Q 027441          204 FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~lvi  223 (223)
                        ..+..+.++|+|+|.+++
T Consensus       105 --~~~~~~~~~l~~~G~iv~  122 (168)
T d1piwa2         105 --IDFNIMPKAMKVGGRIVS  122 (168)
T ss_dssp             --CCTTTGGGGEEEEEEEEE
T ss_pred             --chHHHHHHHhhccceEEE
Confidence              124457889999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.83  E-value=0.055  Score=39.88  Aligned_cols=79  Identities=19%  Similarity=0.231  Sum_probs=51.7

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCc---------EEEccCCCCC-------CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPS---------VIACDMSNTP-------LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~---------~~~~d~~~lp-------~~~~sfD~Vi~~~  197 (223)
                      .++.+||=+|||. |.++..++     ..|+++|.++.+..         ++...-.+..       .....+|+|+-+-
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~  106 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA  106 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence            4788999999998 66655555     47889999973321         1111111111       1135689988544


Q ss_pred             cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPR-GEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi  223 (223)
                      .     -+..+.+..+.|+|| |.+++
T Consensus       107 G-----~~~~~~~a~~~~~~g~G~~v~  128 (174)
T d1e3ia2         107 G-----TAQTLKAAVDCTVLGWGSCTV  128 (174)
T ss_dssp             C-----CHHHHHHHHHTBCTTTCEEEE
T ss_pred             c-----cchHHHHHHHHhhcCCeEEEe
Confidence            3     278899999999996 99874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.029  Score=41.13  Aligned_cols=78  Identities=12%  Similarity=0.138  Sum_probs=51.3

Q ss_pred             CCCCeEEEECC-c-chHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEccc
Q 027441          140 SPSLVIADFGC-G-DARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGc-G-~G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~  198 (223)
                      .++.+||-+|+ | .|..+..++    .+|++++-++....+       .+.|..+..        .....||+|+.+..
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g  106 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA  106 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc
Confidence            47889999997 3 455555555    578888877621111       122332222        12456999998765


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                            ...+....++|+|+|.+++
T Consensus       107 ------~~~~~~~~~~l~~~G~iv~  125 (174)
T d1yb5a2         107 ------NVNLSKDLSLLSHGGRVIV  125 (174)
T ss_dssp             ------HHHHHHHHHHEEEEEEEEE
T ss_pred             ------HHHHHHHHhccCCCCEEEE
Confidence                  5678889999999999874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.20  E-value=0.042  Score=39.80  Aligned_cols=78  Identities=15%  Similarity=0.156  Sum_probs=48.0

Q ss_pred             CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCC-------CCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP-------LNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp-------~~~~sfD~Vi~~~~l~  200 (223)
                      .++.+||=+|||. |.++..++    .+|+++|.++.+..+       ...|.....       ...+.+|+|++...  
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~--  103 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS--  103 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC--
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc--
Confidence            3778888899986 33444443    589999988732211       111221111       11234556665555  


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                          ...+....+.|+|||.+++
T Consensus       104 ----~~~~~~~~~~l~~~G~iv~  122 (166)
T d1llua2         104 ----NSAFGQAIGMARRGGTIAL  122 (166)
T ss_dssp             ----HHHHHHHHTTEEEEEEEEE
T ss_pred             ----chHHHHHHHHhcCCcEEEE
Confidence                6788899999999999874

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.93  E-value=0.033  Score=45.42  Aligned_cols=54  Identities=15%  Similarity=0.036  Sum_probs=38.8

Q ss_pred             HHHHHHHHhcc-----CCCCeEEEECCcchHHHHHhc-----CceEEEecCC------------CCCcEEEccCCC
Q 027441          129 VNIIVKWLKDH-----SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSN  182 (223)
Q Consensus       129 ~~~i~~~l~~~-----~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------~~~~~~~~d~~~  182 (223)
                      .+.|++.+...     ..+..|||||.|.|.++..|.     .+|+++++.+            .++.++.+|+..
T Consensus        26 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          26 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             HHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            45566655321     245789999999999998885     3799999986            456677777643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.1  Score=37.87  Aligned_cols=79  Identities=14%  Similarity=0.143  Sum_probs=50.1

Q ss_pred             CCCCeEEEECCcchH-HHHHhc-----CceEEEecCCCCCc--------EEEc-cCCCCC--------CCCCceeEEEEc
Q 027441          140 SPSLVIADFGCGDAR-LAKSVK-----NKVFSFDLVSNDPS--------VIAC-DMSNTP--------LNSSSVDVAVFC  196 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~-~a~~la-----~~v~gvDis~~~~~--------~~~~-d~~~lp--------~~~~sfD~Vi~~  196 (223)
                      .++.+||=+|||+.. ++..++     .+|+++|.++.+..        .+.. +-.+..        .....+|+|+-+
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~  104 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  104 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEec
Confidence            477899999998754 333333     37999999873221        1111 111110        012458988865


Q ss_pred             ccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          197 LSLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       197 ~~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      -..     +..+..+..+|+|||.+++
T Consensus       105 ~G~-----~~~~~~a~~~~~~gG~iv~  126 (171)
T d1pl8a2         105 TGA-----EASIQAGIYATRSGGTLVL  126 (171)
T ss_dssp             SCC-----HHHHHHHHHHSCTTCEEEE
T ss_pred             cCC-----chhHHHHHHHhcCCCEEEE
Confidence            442     6789999999999999874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.63  E-value=0.08  Score=38.72  Aligned_cols=79  Identities=18%  Similarity=0.304  Sum_probs=49.8

Q ss_pred             CCCCeEEEECCcchH-HHHHhc-----CceEEEecCCCC---------CcEEEccCCCC-----CCCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDAR-LAKSVK-----NKVFSFDLVSND---------PSVIACDMSNT-----PLNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~-~a~~la-----~~v~gvDis~~~---------~~~~~~d~~~l-----p~~~~sfD~Vi~~~~l  199 (223)
                      .++.+||=+|||.-. .+..++     ..|+++|.++..         .+++..+-.++     .+.++.||+|+-+-. 
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G-  105 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG-  105 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC-
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC-
Confidence            478899999998643 333333     467788887621         22222221111     122457999985543 


Q ss_pred             cCCCHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                          -+..+..+.++|+|+|.+++
T Consensus       106 ----~~~~~~~~~~~~~~~G~i~~  125 (174)
T d1f8fa2         106 ----SPEILKQGVDALGILGKIAV  125 (174)
T ss_dssp             ----CHHHHHHHHHTEEEEEEEEE
T ss_pred             ----cHHHHHHHHhcccCceEEEE
Confidence                16788999999999999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.43  E-value=0.24  Score=35.82  Aligned_cols=79  Identities=19%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             CCCCeEEEECCcchH-HHHHhc-----CceEEEecCCCCCcE-------EEccCCCCC-------CCCCceeEEEEcccc
Q 027441          140 SPSLVIADFGCGDAR-LAKSVK-----NKVFSFDLVSNDPSV-------IACDMSNTP-------LNSSSVDVAVFCLSL  199 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~-~a~~la-----~~v~gvDis~~~~~~-------~~~d~~~lp-------~~~~sfD~Vi~~~~l  199 (223)
                      .++..||=+|||... ++..++     ..|+++|.++....+       ...+..+-+       .....+|+|+.+...
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~  110 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGS  110 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence            478899999998754 333333     478889988621111       111221111       123458998866552


Q ss_pred             cCCCHHHHHHHHHHccCCCCEEEc
Q 027441          200 MGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       200 ~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                           ...+....++|++||.+++
T Consensus       111 -----~~~~~~a~~~l~~~G~iv~  129 (172)
T d1h2ba2         111 -----QATVDYTPYLLGRMGRLII  129 (172)
T ss_dssp             -----HHHHHHGGGGEEEEEEEEE
T ss_pred             -----chHHHHHHHHHhCCCEEEE
Confidence                 5678999999999999874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.10  E-value=0.11  Score=37.62  Aligned_cols=79  Identities=15%  Similarity=0.193  Sum_probs=49.7

Q ss_pred             CCCCeEEEECCc--chHHHHHhc-----CceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCG--DARLAKSVK-----NKVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG--~G~~a~~la-----~~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~  197 (223)
                      .++.+||=+||+  .|.++..++     ..|+++|.++....+       ...+.....        .....||+|+.+.
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~  105 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN  105 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhccc
Confidence            477899999973  344444433     478999988722111       111221111        1235699999765


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .-     +..+..+.++|+|||.+++
T Consensus       106 g~-----~~~~~~a~~~l~~~G~iv~  126 (170)
T d1jvba2         106 NS-----EKTLSVYPKALAKQGKYVM  126 (170)
T ss_dssp             CC-----HHHHTTGGGGEEEEEEEEE
T ss_pred             cc-----chHHHhhhhhcccCCEEEE
Confidence            42     6778888999999999874

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.89  E-value=0.15  Score=36.57  Aligned_cols=78  Identities=15%  Similarity=0.184  Sum_probs=47.4

Q ss_pred             CCCCeEEEECCcchH-HHHHhc----CceEEEecCCCCCc--------EEEccCCCCC------CCCCceeEEEEccccc
Q 027441          140 SPSLVIADFGCGDAR-LAKSVK----NKVFSFDLVSNDPS--------VIACDMSNTP------LNSSSVDVAVFCLSLM  200 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~-~a~~la----~~v~gvDis~~~~~--------~~~~d~~~lp------~~~~sfD~Vi~~~~l~  200 (223)
                      .++.+||=+|||+-. .+..++    .+|+++|.++.+..        .+........      ...+.+|+|++...  
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--  103 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS--  103 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC--
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCC--
Confidence            378899999998754 333333    57899998873222        2211111110      11334555554433  


Q ss_pred             CCCHHHHHHHHHHccCCCCEEEc
Q 027441          201 GINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       201 ~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                          ...+....++|+|||.+++
T Consensus       104 ----~~~~~~a~~~l~~~G~i~~  122 (168)
T d1rjwa2         104 ----KPAFQSAYNSIRRGGACVL  122 (168)
T ss_dssp             ----HHHHHHHHHHEEEEEEEEE
T ss_pred             ----HHHHHHHHHHhccCCceEe
Confidence                6788999999999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.72  E-value=0.052  Score=39.47  Aligned_cols=80  Identities=16%  Similarity=0.278  Sum_probs=49.1

Q ss_pred             cCCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcEE-------EccCCCC---CCCCCceeEEEEcccccCCC
Q 027441          139 HSPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSNT---PLNSSSVDVAVFCLSLMGIN  203 (223)
Q Consensus       139 ~~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~l---p~~~~sfD~Vi~~~~l~~~d  203 (223)
                      ..++.+||=+|||. |.++..++    .+++++|.++.+.++.       ..|....   ......||+|+.+-..    
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~----  103 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA----  103 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS----
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec----
Confidence            34788999999986 44555554    5778888876432211       1121111   1123569998866542    


Q ss_pred             HHHHHHHHHHccCCCCEEEc
Q 027441          204 FPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~lvi  223 (223)
                       +..+....++|+|+|.+++
T Consensus       104 -~~~~~~~~~~l~~~G~iv~  122 (168)
T d1uufa2         104 -PHNLDDFTTLLKRDGTMTL  122 (168)
T ss_dssp             -CCCHHHHHTTEEEEEEEEE
T ss_pred             -chhHHHHHHHHhcCCEEEE
Confidence             2346677889999999874

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=90.04  E-value=0.06  Score=42.31  Aligned_cols=60  Identities=12%  Similarity=-0.045  Sum_probs=46.0

Q ss_pred             CeEEEECCcchHHHHHhc---CceEEEecCC------------------------CCCcEEEccCCC-CCCCCCceeEEE
Q 027441          143 LVIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACDMSN-TPLNSSSVDVAV  194 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la---~~v~gvDis~------------------------~~~~~~~~d~~~-lp~~~~sfD~Vi  194 (223)
                      .+|||.-||.|..+..++   .+|++++-++                        .++.++.+|... +.-....||+|+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIY  169 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEE
Confidence            589999999999998887   6899999886                        145677888643 332356799999


Q ss_pred             EcccccCC
Q 027441          195 FCLSLMGI  202 (223)
Q Consensus       195 ~~~~l~~~  202 (223)
                      .--++.+-
T Consensus       170 lDPMFp~~  177 (250)
T d2oyra1         170 LDPMFPHK  177 (250)
T ss_dssp             ECCCCCCC
T ss_pred             ECCCCccc
Confidence            88777544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.41  E-value=1  Score=32.50  Aligned_cols=80  Identities=16%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             cCCCCeEEEECCcchHHH-HHhc-----CceEEEecCCCCCc---------EEEccCCCCC-------CCCCceeEEEEc
Q 027441          139 HSPSLVIADFGCGDARLA-KSVK-----NKVFSFDLVSNDPS---------VIACDMSNTP-------LNSSSVDVAVFC  196 (223)
Q Consensus       139 ~~~~~~ILDiGcG~G~~a-~~la-----~~v~gvDis~~~~~---------~~~~d~~~lp-------~~~~sfD~Vi~~  196 (223)
                      ..++.+||=+|||...+. ..++     ..|+++|.++...+         ++...-.+..       ....-+|+|+-+
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            347899999999975533 3232     57999999873322         2211111111       123458888755


Q ss_pred             ccccCCCHHHHHHHHHHccCC-CCEEEc
Q 027441          197 LSLMGINFPNYLQEAQRVLKP-RGEEQI  223 (223)
Q Consensus       197 ~~l~~~d~~~~l~e~~rvLkp-gG~lvi  223 (223)
                      -..     ...+......|++ +|.+++
T Consensus       105 ~g~-----~~~~~~~~~~~~~~~G~~v~  127 (174)
T d1p0fa2         105 AGR-----IETMMNALQSTYCGSGVTVV  127 (174)
T ss_dssp             SCC-----HHHHHHHHHTBCTTTCEEEE
T ss_pred             CCC-----chHHHHHHHHHHHhcCceEE
Confidence            442     5566666666655 688764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=87.45  E-value=0.35  Score=35.92  Aligned_cols=82  Identities=21%  Similarity=0.191  Sum_probs=51.2

Q ss_pred             CCCeEEEECCcchHH-HHHhc----CceEEEecCCCCC--------cEEEccCCC-------------CC--CC------
Q 027441          141 PSLVIADFGCGDARL-AKSVK----NKVFSFDLVSNDP--------SVIACDMSN-------------TP--LN------  186 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~-a~~la----~~v~gvDis~~~~--------~~~~~d~~~-------------lp--~~------  186 (223)
                      +..+||=||+|...+ +...+    +.|+++|++....        .|+..+...             +.  +.      
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            568999999998553 33333    7999999997322        222111100             00  00      


Q ss_pred             ----CCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441          187 ----SSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       187 ----~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv  222 (223)
                          -...|+||..-.+-.- .|.-+-+++.+.+|||..++
T Consensus       108 l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         108 VLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence                1247999987776654 44456778899999999875

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.11  E-value=0.52  Score=33.98  Aligned_cols=77  Identities=18%  Similarity=0.210  Sum_probs=48.3

Q ss_pred             CCCCeEEEECC-c-chHHHHHhc----CceEEEecCCC--------CCcEEEccCCCCC--------CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGC-G-DARLAKSVK----NKVFSFDLVSN--------DPSVIACDMSNTP--------LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGc-G-~G~~a~~la----~~v~gvDis~~--------~~~~~~~d~~~lp--------~~~~sfD~Vi~~~  197 (223)
                      .++.+||=.|+ | .|.++..++    .+|++++-++.        ..+.+ .|..+..        .....||+|+.+.
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~~~g~d~v~d~~  102 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDFADEILELTDGYGVDVVLNSL  102 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccccc-ccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence            46788998774 3 345555554    57777766541        11221 2222221        1235699999877


Q ss_pred             cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                      .      ...+..+.++|+|+|.++.
T Consensus       103 g------~~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_         103 A------GEAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             C------THHHHHHHHTEEEEEEEEE
T ss_pred             c------chHHHHHHHHhcCCCEEEE
Confidence            6      4577889999999999873

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=87.06  E-value=0.92  Score=32.76  Aligned_cols=78  Identities=12%  Similarity=0.051  Sum_probs=50.4

Q ss_pred             CCCCeEEEECCcchH--HHHHhc----CceEEEecCCCC--------Cc-EEEccCCCCC------CCCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGDAR--LAKSVK----NKVFSFDLVSND--------PS-VIACDMSNTP------LNSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~--~a~~la----~~v~gvDis~~~--------~~-~~~~d~~~lp------~~~~sfD~Vi~~~~  198 (223)
                      .++.+||=.|+|.|.  .+..++    .+|++++-++..        .+ ++.-+-++..      .....+|+|+-+-.
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG  107 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  107 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC
Confidence            478899988886654  444444    689998877521        11 1111111110      12456999997766


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                            ...+.++..+|+|||.+++
T Consensus       108 ------~~~~~~~~~~l~~~G~~v~  126 (182)
T d1v3va2         108 ------GEFLNTVLSQMKDFGKIAI  126 (182)
T ss_dssp             ------HHHHHHHGGGEEEEEEEEE
T ss_pred             ------chhhhhhhhhccCCCeEEe
Confidence                  5688999999999999874

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=85.55  E-value=2.7  Score=33.11  Aligned_cols=81  Identities=12%  Similarity=0.071  Sum_probs=53.1

Q ss_pred             CeEEEECCcchHHHHHhc--C--ceEEEecCC-----------------CCCcEEEccCCCC--------CCCCCceeEE
Q 027441          143 LVIADFGCGDARLAKSVK--N--KVFSFDLVS-----------------NDPSVIACDMSNT--------PLNSSSVDVA  193 (223)
Q Consensus       143 ~~ILDiGcG~G~~a~~la--~--~v~gvDis~-----------------~~~~~~~~d~~~l--------p~~~~sfD~V  193 (223)
                      ..|+.||||-=..+..+.  .  .++-+|.-.                 .+..++..|+..-        .|....--++
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl~  170 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTAW  170 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEE
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEEE
Confidence            446669999766665554  3  345555432                 1234556666531        1333455788


Q ss_pred             EEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441          194 VFCLSLMGINF---PNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       194 i~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi  223 (223)
                      ++-++++|++.   ..+|..+.....||+.|++
T Consensus       171 i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~  203 (297)
T d2uyoa1         171 LAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV  203 (297)
T ss_dssp             EECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             EEccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            88889999944   4889999999999998874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=85.50  E-value=0.77  Score=32.90  Aligned_cols=78  Identities=12%  Similarity=0.054  Sum_probs=50.8

Q ss_pred             CCCCeEEEECCcc--hHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCCC--------CCCceeEEEEccc
Q 027441          140 SPSLVIADFGCGD--ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTPL--------NSSSVDVAVFCLS  198 (223)
Q Consensus       140 ~~~~~ILDiGcG~--G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp~--------~~~sfD~Vi~~~~  198 (223)
                      .++.+||=.|+|.  |.++..++    .+|++++.++....+       .+.|..+..+        ....+|+|+.+..
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g  106 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG  106 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc
Confidence            4678999997776  44555554    689999999732111       1223322221        2457999987766


Q ss_pred             ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441          199 LMGINFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       199 l~~~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                            ...+.....+|+|+|.+++
T Consensus       107 ------~~~~~~~~~~l~~~G~~v~  125 (179)
T d1qora2         107 ------RDTWERSLDCLQRRGLMVS  125 (179)
T ss_dssp             ------GGGHHHHHHTEEEEEEEEE
T ss_pred             ------HHHHHHHHHHHhcCCeeee
Confidence                  3467788999999998753

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=83.47  E-value=0.48  Score=36.98  Aligned_cols=50  Identities=16%  Similarity=0.278  Sum_probs=34.9

Q ss_pred             CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCCCCcE
Q 027441          124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSNDPSV  175 (223)
Q Consensus       124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~~~~~  175 (223)
                      -|...++.++....  .++..|||.=||+|..+.+..   .+.+|+|+++..+.+
T Consensus       235 kP~~L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~  287 (320)
T d1booa_         235 FPAKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAA  287 (320)
T ss_dssp             CCTHHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CchHHHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHH
Confidence            34444455554433  478999999999998766554   689999999744433

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.42  E-value=2.3  Score=30.55  Aligned_cols=79  Identities=15%  Similarity=0.186  Sum_probs=44.5

Q ss_pred             CCCCeEEEECCcchHH-HHHhc-----CceEEEecCCCCCc---------EEE-ccCCCCC------CCCCceeEEEEcc
Q 027441          140 SPSLVIADFGCGDARL-AKSVK-----NKVFSFDLVSNDPS---------VIA-CDMSNTP------LNSSSVDVAVFCL  197 (223)
Q Consensus       140 ~~~~~ILDiGcG~G~~-a~~la-----~~v~gvDis~~~~~---------~~~-~d~~~lp------~~~~sfD~Vi~~~  197 (223)
                      .++.+||=+|||...+ +..++     .+|+++|.++...+         ++- .+.....      .....+|+|+-+.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~  107 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVI  107 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECS
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeC
Confidence            4789999999997543 33332     58999999984322         111 1111100      1234588887555


Q ss_pred             cccCCCHHHHHHHHHH-ccCCCCEEEc
Q 027441          198 SLMGINFPNYLQEAQR-VLKPRGEEQI  223 (223)
Q Consensus       198 ~l~~~d~~~~l~e~~r-vLkpgG~lvi  223 (223)
                      .-     +..+..... +++++|.+++
T Consensus       108 g~-----~~~~~~a~~~~~~~~G~~v~  129 (176)
T d1d1ta2         108 GH-----LETMIDALASCHMNYGTSVV  129 (176)
T ss_dssp             CC-----HHHHHHHHTTSCTTTCEEEE
T ss_pred             Cc-----hHHHHHHHHHhhcCCeEEEE
Confidence            42     444455444 4456688764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=82.66  E-value=0.092  Score=38.69  Aligned_cols=82  Identities=10%  Similarity=0.031  Sum_probs=52.6

Q ss_pred             CCCeEEEECCcchHH-HHHhc----CceEEEecCCC-----------CCcEEEccCCCCCCCCCceeEEEEcccccCC-C
Q 027441          141 PSLVIADFGCGDARL-AKSVK----NKVFSFDLVSN-----------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-N  203 (223)
Q Consensus       141 ~~~~ILDiGcG~G~~-a~~la----~~v~gvDis~~-----------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d  203 (223)
                      +..+|+=||+|...+ +...+    +.|+++|.+..           ++.+...+-+.+.-.-...|+||.+-.+-.- .
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a  110 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA  110 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence            468999999997543 33333    78999999862           2333322221111111357999988776544 4


Q ss_pred             HHHHHHHHHHccCCCCEEE
Q 027441          204 FPNYLQEAQRVLKPRGEEQ  222 (223)
Q Consensus       204 ~~~~l~e~~rvLkpgG~lv  222 (223)
                      |.-+-+++.+.+|||..++
T Consensus       111 P~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         111 PILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CCCBCHHHHTTSCTTCEEE
T ss_pred             CeeecHHHHhhcCCCcEEE
Confidence            4466678889999998875

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.31  E-value=0.64  Score=33.95  Aligned_cols=77  Identities=14%  Similarity=0.062  Sum_probs=48.7

Q ss_pred             CCCeEEEECCcch--HHHHHhc----CceEEEecCCCCCcEE-------EccCCC------CCCCCCceeEEEEcccccC
Q 027441          141 PSLVIADFGCGDA--RLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSN------TPLNSSSVDVAVFCLSLMG  201 (223)
Q Consensus       141 ~~~~ILDiGcG~G--~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~------lp~~~~sfD~Vi~~~~l~~  201 (223)
                      ++.+||=.|++.|  .++..++    .+|+++.-++....+.       +.|-.+      .......||+|+-...   
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg---  107 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG---  107 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST---
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC---
Confidence            5678999887655  4555554    6888887776322110       111111      1234568999987655   


Q ss_pred             CCHHHHHHHHHHccCCCCEEEc
Q 027441          202 INFPNYLQEAQRVLKPRGEEQI  223 (223)
Q Consensus       202 ~d~~~~l~e~~rvLkpgG~lvi  223 (223)
                         ...+....++|+|||.+++
T Consensus       108 ---g~~~~~~l~~l~~~Griv~  126 (176)
T d1xa0a2         108 ---GRTLATVLSRMRYGGAVAV  126 (176)
T ss_dssp             ---TTTHHHHHHTEEEEEEEEE
T ss_pred             ---chhHHHHHHHhCCCceEEE
Confidence               4468889999999999874