Citrus Sinensis ID: 027455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQFF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLwdafsdggeaeEFEEVEKKLDADFkanagatkegskaddeLKKQRRPFLLQFFSPIFLKAFSITffgewgdksqlatiglaadenpfgVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQFF
Flexible Loop (DISEMBL)
mssvvqgfTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAdfkanagatkegskaddelKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQFF
Low Complexity Region (SEG)
MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGeaeefeeveKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICffffnttyqff
Disordered region (IsUnstruct)
******GFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSD****************************************PFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQF*
Disordered Region (DISOPRED)
***VVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSD****************************************PFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQFF
Disordered Region (DISEMBL)
MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANA************LKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQFF
Disordered Region (DISPRO)
*SSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGG***********************************QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQFF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q9C6M1	230	GDT1-like protein 4 OS=Ar	yes	no	0.941	0.913	0.772	1e-87
Q9SX28	228	GDT1-like protein 5 OS=Ar	no	no	0.932	0.912	0.779	3e-85
B9G125	232	GDT1-like protein 5 OS=Or	yes	no	0.919	0.883	0.756	3e-83
Q2R4J1	279	GDT1-like protein 3 OS=Or	no	no	0.896	0.716	0.432	2e-39
A2ZE50	279	GDT1-like protein 3 OS=Or	N/A	no	0.896	0.716	0.432	2e-39
Q6ZIB9	282	GDT1-like protein 4 OS=Or	no	no	0.910	0.719	0.426	3e-38
A2YXC7	281	GDT1-like protein 4 OS=Or	N/A	no	0.910	0.722	0.426	3e-38
Q93Y38	293	GDT1-like protein 3 OS=Ar	no	no	0.923	0.703	0.415	8e-38
Q9HC07	324	Transmembrane protein 165	yes	no	0.919	0.632	0.426	1e-37
P52875	323	Transmembrane protein 165	yes	no	0.919	0.634	0.424	1e-33

>sp|Q9C6M1|GDT14_ARATH GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1

 Score =  322 bits (826), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 163/211 (77%), Positives = 178/211 (84%), Gaps = 1/211 (0%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           MSSV+QGFTKSLAMT +SEIGDKTFFAAAILAMR+PRRLVL+GCL ALIVMTILSA +GW
Sbjct: 1   MSSVLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKL-DADFKANAGATK 119
            APNLISRK THHITT+LFFGFGLWSLWD F +GG   E     +   DAD KAN  + K
Sbjct: 61  AAPNLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDADLKANGKSPK 120

Query: 120 EGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLG 179
           + SK +DE KKQ R FL QFFSPIFLKAFSI FFGEWGDKSQLATIGLAADENPFGVVLG
Sbjct: 121 DSSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLG 180

Query: 180 GIIGQALCTTAAVIGGKSLASQISEKIVIMD 210
           G++ Q LCTTAAVIGGKSLASQISE+IV + 
Sbjct: 181 GVVAQFLCTTAAVIGGKSLASQISERIVALS 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX28|GDT15_ARATH GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=2 SV=1

 Score =  314 bits (804), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 163/209 (77%), Positives = 179/209 (85%), Gaps = 1/209 (0%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           M S++QGFTKSLAMT LSEIGDKTFFAAAILAMR+PRRLVL+GCL ALIVMTILSA +GW
Sbjct: 1   MGSLLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISRK THHITT LFFGFGLWSLWD F +GG +EE  EVE +LD+D K     +K 
Sbjct: 61  AAPNLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSDLKKTNDQSKN 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
            SK +DE KKQ+RPFL  FFSPIFLKAFSI FFGEWGDKSQLATIGLAADENP GVVLGG
Sbjct: 121 -SKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGG 179

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVIM 209
           I+ Q LCTTAAV+GGKSLASQISE+IV +
Sbjct: 180 IVAQTLCTTAAVLGGKSLASQISERIVAL 208

Arabidopsis thaliana (taxid: 3702)

>sp|B9G125|GDT15_ORYSJ GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100 PE=2 SV=1

 Score =  308 bits (788), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 183/205 (89%)

Query: 3   SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
           S++ GFTKSLAMTVLSEIGDKTFFAAAILAMR+PR+LVL+GCL +L VMT LS  +GWVA
Sbjct: 4   SLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLGWVA 63

Query: 63  PNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGS 122
           PNLISRK THH+TT+LFF FG+ SLW+ F + G++EE  EVE +LDA+FK+N   +K  S
Sbjct: 64  PNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSEELAEVEAELDANFKSNKAESKSKS 123

Query: 123 KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 182
           KA+D+ KKQ+RPF+LQFFSPIF+KAFSITFFGEWGDKSQ+ATIGLAADENPFGVVLGG++
Sbjct: 124 KANDDKKKQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGVL 183

Query: 183 GQALCTTAAVIGGKSLASQISEKIV 207
            QALCTTAAV+GGKSLASQISEK+V
Sbjct: 184 AQALCTTAAVMGGKSLASQISEKMV 208

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2R4J1|GDT13_ORYSJ GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/215 (43%), Positives = 132/215 (61%), Gaps = 15/215 (6%)

Query: 11  SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKL 70
           SL+M ++SEIGD+TF  AA++AMRHP+ +VLSG L AL VMT+LS  +G + PNLISRK 
Sbjct: 75  SLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKH 134

Query: 71  THHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKK 130
           T+   TVL+  FGL  L+ A+    +  + +E+E+  +                    K 
Sbjct: 135 TNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKLESGQG-------------KS 181

Query: 131 QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTA 190
             R F  +F +PIFL+AF +TF  EWGD+SQ+ATI LA  +N  GV +G  +G  +CT+ 
Sbjct: 182 TLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSL 241

Query: 191 AVIGGKSLASQISEKIV--IMDICFFFFNTTYQFF 223
           AVIGG  LAS+IS++ V  I  + F  F+ +  F+
Sbjct: 242 AVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFY 276

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2ZE50|GDT13_ORYSI GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/215 (43%), Positives = 132/215 (61%), Gaps = 15/215 (6%)

Query: 11  SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKL 70
           SL+M ++SEIGD+TF  AA++AMRHP+ +VLSG L AL VMT+LS  +G + PNLISRK 
Sbjct: 75  SLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKH 134

Query: 71  THHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKK 130
           T+   TVL+  FGL  L+ A+    +  + +E+E+  +                    K 
Sbjct: 135 TNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKLESGQG-------------KS 181

Query: 131 QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTA 190
             R F  +F +PIFL+AF +TF  EWGD+SQ+ATI LA  +N  GV +G  +G  +CT+ 
Sbjct: 182 TLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSL 241

Query: 191 AVIGGKSLASQISEKIV--IMDICFFFFNTTYQFF 223
           AVIGG  LAS+IS++ V  I  + F  F+ +  F+
Sbjct: 242 AVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFY 276

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6ZIB9|GDT14_ORYSJ GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500 PE=2 SV=1

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 132/218 (60%), Gaps = 15/218 (6%)

Query: 8   FTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLIS 67
           F  SL+M ++SEIGD+TF  AA++AMRHP+  VLSG L AL+VMTILS  +G + PNLIS
Sbjct: 75  FFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLIS 134

Query: 68  RKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDE 127
           RK T+   TVL+  FGL  L+ A+    +A + +E+E+  +                   
Sbjct: 135 RKHTNSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAGQG------------ 182

Query: 128 LKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALC 187
            K   R    +F +PIFL++F +TF  EWGD+SQ+ATI LA  +N  GV +G  +G  +C
Sbjct: 183 -KSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTIC 241

Query: 188 TTAAVIGGKSLASQISEKIV--IMDICFFFFNTTYQFF 223
           T+ AV+GG  LAS+IS+  V  I  + F  F+ +  F+
Sbjct: 242 TSFAVVGGSMLASKISQGTVATIGGLLFLGFSLSSYFY 279

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YXC7|GDT14_ORYSI GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3 SV=1

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 132/218 (60%), Gaps = 15/218 (6%)

Query: 8   FTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLIS 67
           F  SL+M ++SEIGD+TF  AA++AMRHP+  VLSG L AL+VMTILS  +G + PNLIS
Sbjct: 74  FFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLIS 133

Query: 68  RKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDE 127
           RK T+   TVL+  FGL  L+ A+    +A + +E+E+  +                   
Sbjct: 134 RKHTNSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAGQG------------ 181

Query: 128 LKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALC 187
            K   R    +F +PIFL++F +TF  EWGD+SQ+ATI LA  +N  GV +G  +G  +C
Sbjct: 182 -KSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTIC 240

Query: 188 TTAAVIGGKSLASQISEKIV--IMDICFFFFNTTYQFF 223
           T+ AV+GG  LAS+IS+  V  I  + F  F+ +  F+
Sbjct: 241 TSFAVVGGSMLASKISQGTVATIGGLLFLGFSLSSYFY 278

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1

 Score =  156 bits (395), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/226 (41%), Positives = 132/226 (58%), Gaps = 20/226 (8%)

Query: 3   SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
           SV      S +M +++EIGD+TF  AA++AMRHP+  VLSG L AL VMTILS  +G + 
Sbjct: 80  SVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGRIV 139

Query: 63  PNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGS 122
           PNLISRK T+   TVL+  FGL  L+ A+                  D K+N     E  
Sbjct: 140 PNLISRKHTNSAATVLYAFFGLRLLYIAWR---------------STDSKSNQKKEMEEV 184

Query: 123 KADDELKKQRRPF---LLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLG 179
           +   E  + + PF     +F +PIFL++F +TF  EWGD+SQ+ATI LA  +N  GV +G
Sbjct: 185 EEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIG 244

Query: 180 GIIGQALCTTAAVIGGKSLASQISEKIV--IMDICFFFFNTTYQFF 223
             IG  +CT+ AV+GG  LAS+IS++ V  +  + F  F+ +  F+
Sbjct: 245 ASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFY 290

Arabidopsis thaliana (taxid: 3702)

>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/225 (42%), Positives = 137/225 (60%), Gaps = 20/225 (8%)

Query: 5   VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
           +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct: 94  IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATT 152

Query: 65  LISRKLTHHITTVLFFGFGLWSLWDAF---SDGGEAEEFEEVE---KKLDADFKAN---- 114
           +I R  T++++TVLF  FG+  L +      D G+ EE EEV+   KK D +F+      
Sbjct: 153 VIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQ-EELEEVQAELKKKDEEFQRTKLLN 211

Query: 115 -AGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP 173
             G  + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P
Sbjct: 212 GPGDVETGTSITVPQKK-----WLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDP 266

Query: 174 FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIV--IMDICFFFF 216
           +GV +GG +G  LCT  AVIGG+ +A +IS + V  I  I F  F
Sbjct: 267 YGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAF 311

Homo sapiens (taxid: 9606)

>sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 136/224 (60%), Gaps = 19/224 (8%)

Query: 5   VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
           +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct: 94  IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATT 152

Query: 65  LISRKLTHHITTVLFFGFGLWSLWDAF---SDGGEAEEFEEVE---KKLDADFKA----N 114
           +I R  T++++T LF  FG+  L +      D G+ EE EEV+   KK D +F+     N
Sbjct: 153 VIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQ-EELEEVQAELKKKDEEFQRTKLLN 211

Query: 115 AGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPF 174
               + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+
Sbjct: 212 GPDVETGTSTAIPQKK-----WLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPY 266

Query: 175 GVVLGGIIGQALCTTAAVIGGKSLASQISEKIV--IMDICFFFF 216
           GV +GG +G  LCT  AVIGG+ +A +IS + V  I  I F  F
Sbjct: 267 GVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAF 310

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
255576513	228	Transmembrane protein TPARL, putative [R	0.937	0.916	0.875	9e-97
449465635	230	PREDICTED: GDT1-like protein 4-like [Cuc	0.932	0.904	0.807	4e-94
224108528	228	predicted membrane protein [Populus tric	0.937	0.916	0.856	2e-93
255633124	243	unknown [Glycine max]	0.959	0.880	0.803	4e-93
224127069	228	predicted membrane protein [Populus tric	0.941	0.921	0.847	1e-92
356575520	229	PREDICTED: uncharacterized protein LOC10	0.968	0.943	0.793	1e-91
225423915	230	PREDICTED: GDT1-like protein 4 [Vitis vi	0.928	0.9	0.850	3e-91
224101691	224	predicted membrane protein [Populus tric	0.923	0.919	0.849	5e-91
357147867	232	PREDICTED: GDT1-like protein 5-like isof	0.959	0.922	0.759	8e-91
351725019	229	uncharacterized protein LOC100527455 [Gl	0.968	0.943	0.784	1e-90

>gi|255576513|ref|XP_002529148.1| Transmembrane protein TPARL, putative [Ricinus communis] gi|223531427|gb|EEF33261.1| Transmembrane protein TPARL, putative [Ricinus communis]

 Score =  358 bits (919), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 183/209 (87%), Positives = 195/209 (93%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           MSS+VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILSAVVGW
Sbjct: 1   MSSLVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTILSAVVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNL+SR  THHITT+LFFGFG+WSLWD F+D GEAEE  EVE KLDAD+KAN G TK+
Sbjct: 61  AAPNLLSRTWTHHITTLLFFGFGIWSLWDGFTDKGEAEELAEVEAKLDADWKANKGTTKD 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
           G+KADDELKKQRRPFL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAADENPFGVVLGG
Sbjct: 121 GAKADDELKKQRRPFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVIM 209
           I+GQALCTTAAV+GGKSLASQISEKIV +
Sbjct: 181 IVGQALCTTAAVVGGKSLASQISEKIVAL 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465635|ref|XP_004150533.1| PREDICTED: GDT1-like protein 4-like [Cucumis sativus]

 Score =  349 bits (896), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 168/208 (80%), Positives = 185/208 (88%)

Query: 2   SSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWV 61
           +SV+QGFTKSLAMTVLSEIGDKTFFAAAI+AMRHPRRLVLSGC+ ALIVMT LS +VGW 
Sbjct: 3   TSVIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCMTALIVMTALSVLVGWA 62

Query: 62  APNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEG 121
           APNLISRK  HHITT+LF GFGLWSLWDAF D GE+EE  EVE KLDADFKAN   +K+G
Sbjct: 63  APNLISRKWAHHITTLLFLGFGLWSLWDAFHDEGESEELAEVEAKLDADFKANKKGSKDG 122

Query: 122 SKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGI 181
           +K DD++KK  R  LLQF SPI+LKAFSITFFGEWGDKSQLATIGLAADENP GVVLGGI
Sbjct: 123 NKDDDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADENPLGVVLGGI 182

Query: 182 IGQALCTTAAVIGGKSLASQISEKIVIM 209
           +GQALCTTAAV+GG+SLASQISEKIV +
Sbjct: 183 LGQALCTTAAVLGGRSLASQISEKIVAL 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108528|ref|XP_002314881.1| predicted membrane protein [Populus trichocarpa] gi|222863921|gb|EEF01052.1| predicted membrane protein [Populus trichocarpa]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/209 (85%), Positives = 188/209 (89%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           M+SV QGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILSA+VGW
Sbjct: 1   MTSVAQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTILSAIVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISR  THHITT+LFFGFG WSLWD F+D GEAEE  EVE KLDAD+KAN G TK 
Sbjct: 61  AAPNLISRTWTHHITTILFFGFGFWSLWDGFNDKGEAEELAEVEAKLDADWKANTGTTKG 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
           GSK DDELKK+RRPFL Q FSPI LKAFSITFFGEWGDKSQ+ATIGLAADENP GVVLGG
Sbjct: 121 GSKDDDELKKRRRPFLSQLFSPILLKAFSITFFGEWGDKSQIATIGLAADENPLGVVLGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVIM 209
           I+GQALCTTAAV GGKSLASQISEKIV +
Sbjct: 181 IVGQALCTTAAVFGGKSLASQISEKIVAL 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633124|gb|ACU16917.1| unknown [Glycine max]

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 172/214 (80%), Positives = 186/214 (86%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           MSS+VQGFTKSLAMT+LSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILS +VGW
Sbjct: 1   MSSIVQGFTKSLAMTILSEIGDKTFFAAAILAMRHPRRLVLSGCLSALIVMTILSVLVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISR  THHITT LF GFGLWSL DA  + G+AEE  EVE KLD D+KA+ GATK 
Sbjct: 61  AAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEEGDAEELAEVEAKLDKDWKASNGATKN 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
            +K DD  KK +R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 121 SNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVIMDICFF 214
           I+GQALCT AAV+GGKSLASQISEKIV + + FF
Sbjct: 181 ILGQALCTAAAVVGGKSLASQISEKIVALSVEFF 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127069|ref|XP_002329381.1| predicted membrane protein [Populus trichocarpa] gi|222870431|gb|EEF07562.1| predicted membrane protein [Populus trichocarpa]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 178/210 (84%), Positives = 187/210 (89%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           M+SV QGFTKSLAMTV+SEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILSA VGW
Sbjct: 1   MTSVAQGFTKSLAMTVVSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTILSAAVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISR  THHITT+LFFGFGLWSLWD F+D GEAEE  EVE KLDAD+KAN G  K 
Sbjct: 61  AAPNLISRAWTHHITTILFFGFGLWSLWDGFNDKGEAEELAEVEAKLDADWKANTGTAKV 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
           GSK  DELKKQRR FL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAADENPFGVV+GG
Sbjct: 121 GSKDSDELKKQRRTFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVIMD 210
           I+GQALCTTAAVIGGKSLASQISEKI  + 
Sbjct: 181 IVGQALCTTAAVIGGKSLASQISEKIAALS 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575520|ref|XP_003555888.1| PREDICTED: uncharacterized protein LOC100527757 [Glycine max]

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 173/218 (79%), Positives = 186/218 (85%), Gaps = 2/218 (0%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           MSS+VQGFTKSLAMT+LSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILS +VGW
Sbjct: 1   MSSIVQGFTKSLAMTILSEIGDKTFFAAAILAMRHPRRLVLSGCLSALIVMTILSVLVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISR  THHITT LF GFGLWSL DA  + G+AEE  EVE KLD D+KA+ GATK 
Sbjct: 61  AAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEEGDAEELAEVEAKLDKDWKASNGATKN 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
            +K DD  KK +R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 121 SNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFF 216
           I+GQALCT AAV+GGKSLASQISEKIV +   I F  F
Sbjct: 181 ILGQALCTAAAVVGGKSLASQISEKIVALSGGILFIVF 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423915|ref|XP_002281939.1| PREDICTED: GDT1-like protein 4 [Vitis vinifera] gi|297737851|emb|CBI27052.3| unnamed protein product [Vitis vinifera]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 176/207 (85%), Positives = 185/207 (89%)

Query: 3   SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
           SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTI S VVGW A
Sbjct: 4   SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTIFSVVVGWAA 63

Query: 63  PNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGS 122
           PNL+SRK THHITT+LFFGFGLWSLWD F + GEAEE  EVE KL+AD+K N  + K  S
Sbjct: 64  PNLLSRKWTHHITTLLFFGFGLWSLWDGFKEDGEAEELAEVEAKLNADWKTNTSSAKGDS 123

Query: 123 KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 182
           K DDELKKQRRP L+QFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP GVVLGGII
Sbjct: 124 KDDDELKKQRRPILMQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPIGVVLGGII 183

Query: 183 GQALCTTAAVIGGKSLASQISEKIVIM 209
           GQALCTTAAV+GGKSLASQISEK V +
Sbjct: 184 GQALCTTAAVLGGKSLASQISEKFVAL 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101691|ref|XP_002312384.1| predicted membrane protein [Populus trichocarpa] gi|222852204|gb|EEE89751.1| predicted membrane protein [Populus trichocarpa]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 175/206 (84%), Positives = 184/206 (89%)

Query: 5   VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
           ++GFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILSA VGW APN
Sbjct: 1   IKGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTILSAAVGWAAPN 60

Query: 65  LISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKA 124
           LISR  THHITT+LFFGFGLWSLWD F+D GEAEE  EVE KLDAD+KAN G  K GSK 
Sbjct: 61  LISRAWTHHITTILFFGFGLWSLWDGFNDKGEAEELAEVEAKLDADWKANTGTAKAGSKD 120

Query: 125 DDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQ 184
            DE KKQRR FL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAADENPFGVV+GGI+GQ
Sbjct: 121 SDEFKKQRRTFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGIVGQ 180

Query: 185 ALCTTAAVIGGKSLASQISEKIVIMD 210
           ALCTTAAVIGGKSLASQISEKIV + 
Sbjct: 181 ALCTTAAVIGGKSLASQISEKIVALS 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147867|ref|XP_003574521.1| PREDICTED: GDT1-like protein 5-like isoform 1 [Brachypodium distachyon]

 Score =  338 bits (868), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 164/216 (75%), Positives = 187/216 (86%), Gaps = 2/216 (0%)

Query: 3   SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
           S++ G TKSLAMTVLSE+GDKTFFAAAILAMRHPR+LVL+GCL AL VMT LSA +GWVA
Sbjct: 4   SLLGGLTKSLAMTVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVA 63

Query: 63  PNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGS 122
           PNLISRK THH+TT+LFF FG+WSLW+ F + GE+EE  E+E KLDADFK+N G  K  S
Sbjct: 64  PNLISRKWTHHVTTLLFFVFGIWSLWEGFKEDGESEELAEMEAKLDADFKSNKGEQKNKS 123

Query: 123 KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 182
           KA D+ KKQRRPFL+QFFSPIFLKAFSITFFGEWGDKSQ+ATIGLAADENPFGVV+GG+I
Sbjct: 124 KATDDTKKQRRPFLMQFFSPIFLKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGVI 183

Query: 183 GQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFF 216
            QALCTTAAV+GGKSLASQISEK+V +   + F  F
Sbjct: 184 AQALCTTAAVMGGKSLASQISEKMVELSSGVLFLLF 219

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725019|ref|NP_001236310.1| uncharacterized protein LOC100527455 [Glycine max] gi|255632394|gb|ACU16547.1| unknown [Glycine max]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/218 (78%), Positives = 187/218 (85%), Gaps = 2/218 (0%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           MSS+VQGF+KSLAMT+LSEIGDKTFFAAAILA+RHPRRLVLSGCL ALIVMTIL A+VGW
Sbjct: 1   MSSIVQGFSKSLAMTILSEIGDKTFFAAAILAIRHPRRLVLSGCLSALIVMTILPALVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISR  THHITT LF GFGLWSL DA  + G+AEE  EVE KLD D+KA+ GATK 
Sbjct: 61  AAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEQGDAEELAEVEAKLDKDWKASNGATKN 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
            +K DD  KK +R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 121 SNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFF 216
           I+GQALCT+AAV+GGKSLASQISEKIV +   I F  F
Sbjct: 181 ILGQALCTSAAVVGGKSLASQISEKIVALSGGILFIVF 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2031195	230	AT1G25520 [Arabidopsis thalian	0.937	0.908	0.776	1.3e-82
TAIR|locus:2026879	228	AT1G68650 "AT1G68650" [Arabido	0.932	0.912	0.755	6e-80
WB|WBGene00021847	297	Y54F10AL.1 [Caenorhabditis ele	0.914	0.686	0.433	1.3e-36
TAIR|locus:2183632	293	AT5G36290 "AT5G36290" [Arabido	0.865	0.658	0.434	2.1e-36
FB|FBgn0260659	503	CG42542 [Drosophila melanogast	0.385	0.170	0.482	1.7e-34
ZFIN|ZDB-GENE-030131-3222	305	tmem165 "transmembrane protein	0.892	0.652	0.419	4.6e-34
UNIPROTKB|F1P1B3	254	TMEM165 "Uncharacterized prote	0.883	0.775	0.413	1.5e-33
UNIPROTKB|B4DHW1	261	TMEM165 "cDNA FLJ60544, highly	0.901	0.770	0.401	1.5e-33
UNIPROTKB|Q9HC07	324	TMEM165 "Transmembrane protein	0.901	0.620	0.401	1.5e-33
MGI|MGI:894407	323	Tmem165 "transmembrane protein	0.883	0.609	0.405	3.2e-33

TAIR|locus:2031195 AT1G25520 [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 163/210 (77%), Positives = 179/210 (85%)

Query:     1 MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
             MSSV+QGFTKSLAMT +SEIGDKTFFAAAILAMR+PRRLVL+GCL ALIVMTILSA +GW
Sbjct:     1 MSSVLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGW 60

Query:    61 VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXK-KLDADFKANAGATK 119
              APNLISRK THHITT+LFFGFGLWSLWD F +GG         + +LDAD KAN  + K
Sbjct:    61 AAPNLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDADLKANGKSPK 120

Query:   120 EGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLG 179
             + SK +DE KKQ R FL QFFSPIFLKAFSI FFGEWGDKSQLATIGLAADENPFGVVLG
Sbjct:   121 DSSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLG 180

Query:   180 GIIGQALCTTAAVIGGKSLASQISEKIVIM 209
             G++ Q LCTTAAVIGGKSLASQISE+IV +
Sbjct:   181 GVVAQFLCTTAAVIGGKSLASQISERIVAL 210

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2026879 AT1G68650 "AT1G68650" [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 158/209 (75%), Positives = 173/209 (82%)

Query:     1 MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
             M S++QGFTKSLAMT LSEIGDKTFFAAAILAMR+PRRLVL+GCL ALIVMTILSA +GW
Sbjct:     1 MGSLLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGW 60

Query:    61 VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKE 120
              APNLISRK THHITT LFFGFGLWSLWD F +GG          +LD+D K     +K 
Sbjct:    61 AAPNLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSDLKKTNDQSKN 120

Query:   121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
              SK +DE KKQ+RPFL  FFSPIFLKAFSI FFGEWGDKSQLATIGLAADENP GVVLGG
Sbjct:   121 -SKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGG 179

Query:   181 IIGQALCTTAAVIGGKSLASQISEKIVIM 209
             I+ Q LCTTAAV+GGKSLASQISE+IV +
Sbjct:   180 IVAQTLCTTAAVLGGKSLASQISERIVAL 208

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

WB|WBGene00021847 Y54F10AL.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 92/212 (43%), Positives = 128/212 (60%)

Query:     3 SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
             S   GF  S ++ V+SE+GDKT+F A I++MRH R  V SG +GAL +MT+LSA +GW+ 
Sbjct:    64 SFYHGFLASFSVIVVSELGDKTWFIAVIMSMRHSRLTVFSGAMGALALMTVLSACLGWIT 123

Query:    63 PNLISRKLTHHITTVLFFGFGLWSL---WDAFSDGGXXXXXXXXXKKLDADFKANAGATK 119
               +I R +T++++T LF  FGL  L   W    + G         +    + + +AG  +
Sbjct:   124 -QVIPRAVTYYLSTALFALFGLKMLHEGWTMSPNEGQEGYEEAQAEVAKREGELDAGKFE 182

Query:   120 --EGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVV 177
               EG        + R+ FL  F S IF++AFS+TF  EWGD+SQL TI L A EN  GV+
Sbjct:   183 MLEGGGGVASQSETRKIFL--FTSRIFIEAFSLTFVAEWGDRSQLTTIILGARENIAGVI 240

Query:   178 LGGIIGQALCTTAAVIGGKSLASQISEKIVIM 209
              GGI+G ALCT  AVIGGK +A +IS + V +
Sbjct:   241 GGGILGHALCTGIAVIGGKIVAQRISVRTVTL 272

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2183632 AT5G36290 "AT5G36290" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 89/205 (43%), Positives = 124/205 (60%)

Query:     3 SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
             SV      S +M +++EIGD+TF  AA++AMRHP+  VLSG L AL VMTILS  +G + 
Sbjct:    80 SVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGRIV 139

Query:    63 PNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKEGS 122
             PNLISRK T+   TVL+  FGL  L+ A+             ++++   ++  G T    
Sbjct:   140 PNLISRKHTNSAATVLYAFFGLRLLYIAWRSTDSKSNQKKEMEEVEEKLESGQGKTPF-- 197

Query:   123 KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 182
                      RR F  +F +PIFL++F +TF  EWGD+SQ+ATI LA  +N  GV +G  I
Sbjct:   198 ---------RRLFS-RFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIGASI 247

Query:   183 GQALCTTAAVIGGKSLASQISEKIV 207
             G  +CT+ AV+GG  LAS+IS++ V
Sbjct:   248 GHTVCTSLAVVGGSMLASRISQRTV 272

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

FB|FBgn0260659 CG42542 [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 42/87 (48%), Positives = 61/87 (70%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  FT S+++ +L+E+GDKTFF AAI+AMRHPR +V  G + AL +MT+LS   G +A N
Sbjct:    95 IDAFTASISVILLTELGDKTFFIAAIMAMRHPRLIVFGGAIAALALMTVLSCAFG-MAAN 153

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAF 91
              I +  T++I+T LF  FGL  L+D +
Sbjct:   154 FIPKIYTYYISTALFLIFGLKMLYDGY 180

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-3222 tmem165 "transmembrane protein 165" [Danio rerio (taxid:7955)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 89/212 (41%), Positives = 129/212 (60%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct:    74 IHAFAAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATT 132

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFK----ANA 115
             +I R  T++I+T LF  FG+  L +      D G           KK D + +    AN 
Sbjct:   133 IIPRIYTYYISTALFAIFGVRMLREGLRMSPDEGQEELEEVQAEIKKKDEELQRYKLANG 192

Query:   116 GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFG 175
                 E   A + L +++ P L+   SPIF++A ++TF  EWGD+SQLATI LAA E+PFG
Sbjct:   193 APDVEAGTAANMLPQRKWPSLI---SPIFIQALTLTFLAEWGDRSQLATIVLAAREDPFG 249

Query:   176 VVLGGIIGQALCTTAAVIGGKSLASQISEKIV 207
             V +GG +G  LCT  AVIGG+ +A +IS + V
Sbjct:   250 VAVGGTLGHCLCTGLAVIGGRMVAQKISVRTV 281

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P1B3 TMEM165 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 88/213 (41%), Positives = 126/213 (59%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct:    24 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATT 82

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANA---- 115
             +I R  T++++T LF  FG+  L +      D G           KK D + +       
Sbjct:    83 VIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAEIKKKDEELQRTKLLNG 142

Query:   116 -GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPF 174
              G  + GS A    KK      L F SPIF++AF++TF  EWGD+SQL TI LAA E+P+
Sbjct:   143 PGDVETGSTATIPQKKW-----LHFISPIFVQAFTLTFLAEWGDRSQLTTIVLAAREDPY 197

Query:   175 GVVLGGIIGQALCTTAAVIGGKSLASQISEKIV 207
             GV +GG +G  LCT  AVIGG+ +A +IS + V
Sbjct:   198 GVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTV 230

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|B4DHW1 TMEM165 "cDNA FLJ60544, highly similar to Transmembrane protein TPARL" [Homo sapiens (taxid:9606)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 84/209 (40%), Positives = 126/209 (60%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct:    31 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATT 89

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATK 119
             +I R  T++++TVLF  FG+  L +      D G           KK D +F+       
Sbjct:    90 VIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNG 149

Query:   120 EGS-KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVL 178
              G  +    +   ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +
Sbjct:   150 PGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAV 208

Query:   179 GGIIGQALCTTAAVIGGKSLASQISEKIV 207
             GG +G  LCT  AVIGG+ +A +IS + V
Sbjct:   209 GGTVGHCLCTGLAVIGGRMIAQKISVRTV 237

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9HC07 TMEM165 "Transmembrane protein 165" [Homo sapiens (taxid:9606)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 84/209 (40%), Positives = 126/209 (60%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct:    94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATT 152

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATK 119
             +I R  T++++TVLF  FG+  L +      D G           KK D +F+       
Sbjct:   153 VIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNG 212

Query:   120 EGS-KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVL 178
              G  +    +   ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +
Sbjct:   213 PGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAV 271

Query:   179 GGIIGQALCTTAAVIGGKSLASQISEKIV 207
             GG +G  LCT  AVIGG+ +A +IS + V
Sbjct:   272 GGTVGHCLCTGLAVIGGRMIAQKISVRTV 300

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

MGI|MGI:894407 Tmem165 "transmembrane protein 165" [Mus musculus (taxid:10090)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 86/212 (40%), Positives = 125/212 (58%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct:    94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATT 152

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKA----NA 115
             +I R  T++++T LF  FG+  L +      D G           KK D +F+     N 
Sbjct:   153 VIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNG 212

Query:   116 GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFG 175
                + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+G
Sbjct:   213 PDVETGTSTAIPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYG 267

Query:   176 VVLGGIIGQALCTTAAVIGGKSLASQISEKIV 207
             V +GG +G  LCT  AVIGG+ +A +IS + V
Sbjct:   268 VAVGGTVGHCLCTGLAVIGGRMIAQKISVRTV 299

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SX28	GDT15_ARATH	No assigned EC number	0.7799	0.9327	0.9122	no	no
Q9C6M1	GDT14_ARATH	No assigned EC number	0.7725	0.9417	0.9130	yes	no
B9G125	GDT15_ORYSJ	No assigned EC number	0.7560	0.9192	0.8836	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00101216 hypothetical protein (228 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	4e-40
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	2e-18
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	4e-14
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	1e-06

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score =  135 bits (342), Expect = 4e-40
 Identities = 66/222 (29%), Positives = 98/222 (44%), Gaps = 41/222 (18%)

Query: 5   VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
           ++    SL M  L+EIGDKT   A +LAMR+ R  V +G   AL  M  L+ +VG  A +
Sbjct: 1   LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAAS 60

Query: 65  LISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKA 124
           L+  +     + VLF  F +W L +                                 K 
Sbjct: 61  LLPERPLAWASGVLFLAFAVWMLIED--------------------------------KE 88

Query: 125 DDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PFGVVLGGIIG 183
           DDE  +   P        +F+  F   F  E GDK+Q+ATI LAAD + P+ V  G  +G
Sbjct: 89  DDEEAQAASPRG------VFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLG 142

Query: 184 QALCTTAAVIGGKSLASQISEKIV--IMDICFFFFNTTYQFF 223
             L +  AV+ GK +A ++ E+++  I  + F  F     + 
Sbjct: 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ 184

Length = 190

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 76.0 bits (188), Expect = 2e-18
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 8  FTKSLAMTVLSEIGDKTFFAAAILAMRHPRR--LVLSGCLGALIVMTILSAVVGWVAPNL 65
          F  S  +  L+E+GDKT  A   LA R+ R    V  G   AL + T+L+ ++G     L
Sbjct: 1  FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATL 60

Query: 66 ISRKLTHHITTVLFFGFG 83
          +  ++ H +  VLF  FG
Sbjct: 61 LPPRVLHFVAGVLFLAFG 78

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 64.8 bits (159), Expect = 4e-14
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 144 FLKAFSITFFGEWGDKSQLATIGLAA--DENPFGVVLGGIIGQALCTTAAVIGGKSLASQ 201
           FL +F + F  E GDK+QLATI LAA    +P+ V LG  +  AL T  AV+ G+ LA+ 
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATL 60

Query: 202 ISEKIV 207
           +  +++
Sbjct: 61  LPPRVL 66

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 8   FTKSLAMTVLSEIGDKTFFAAAILAMRHP-RRLVLSGCLGALIVMTILSAVVGWVAPNLI 66
           F  +     L+E+GDKT  A   LA  +     V +G    +I+ ++L+ ++G +    +
Sbjct: 102 FVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKL 161

Query: 67  SRKLTHHITTVLFFGFGLWSLWDAFSDGG 95
             +L   I  +LF  F L  LW  F   G
Sbjct: 162 PERLLRFIAALLFLIFALVLLWQVFEALG 190

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG2881	294	consensus Predicted membrane protein [Function unk	100.0
COG2119	190	Predicted membrane protein [Function unknown]	100.0
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.91
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.91
COG2119	190	Predicted membrane protein [Function unknown]	99.87
KOG2881	294	consensus Predicted membrane protein [Function unk	99.72
COG4280	236	Predicted membrane protein [Function unknown]	97.94
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	97.78
PRK11469	188	hypothetical protein; Provisional	97.69
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	97.69
COG1971	190	Predicted membrane protein [Function unknown]	97.43
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	97.09
PRK10229	206	threonine efflux system; Provisional	96.02
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	96.01
COG0730	258	Predicted permeases [General function prediction o	96.0
PF01914	203	MarC: MarC family integral membrane protein; Inter	95.65
COG4300	205	CadD Predicted permease, cadmium resistance protei	95.46
PF03741	183	TerC: Integral membrane protein TerC family; Inter	95.43
PRK10621	266	hypothetical protein; Provisional	95.34
PF01925	240	TauE: Sulfite exporter TauE/SafE; InterPro: IPR002	95.26
PRK10995	221	inner membrane protein; Provisional	95.15
PF03239	306	FTR1: Iron permease FTR1 family; InterPro: IPR0049	94.26
TIGR00145	283	FTR1 family protein. A characterized member from y	94.1
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	93.65
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	93.62
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	93.3
PRK10958	212	leucine export protein LeuE; Provisional	93.0
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	92.5
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	91.79
TIGR00779	193	cad cadmium resistance transporter (or sequestrati	91.79
PRK09304	207	arginine exporter protein; Provisional	91.7
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	90.21
TIGR00948	177	2a75 L-lysine exporter.	90.19
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	89.05
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	85.25
COG4280	236	Predicted membrane protein [Function unknown]	83.85
PRK11111	214	hypothetical protein; Provisional	83.25
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	82.7
PRK10739	197	putative antibiotic transporter; Provisional	81.1

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.2e-59  Score=412.48  Aligned_cols=222  Identities=54%  Similarity=0.800  Sum_probs=200.6

Q ss_pred             CchhhHHHHHHHHHHHHhhccchHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHH
Q 027455            1 MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFF   80 (223)
Q Consensus         1 ~~~~~~~f~~~f~~iflaE~GDKTql~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl   80 (223)
                      |++++++|..++.+||++|+||||++++++||+||+|..||.|+..|+.+||++++++|+..++++|++|++++++++|+
T Consensus        62 ~~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~  141 (294)
T KOG2881|consen   62 ASSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFL  141 (294)
T ss_pred             hHHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccc--CCCCchhHHHHHHhhhhhhhhccC--cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhc
Q 027455           81 GFGLWSLWDAFS--DGGEAEEFEEVEKKLDADFKANAG--ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEW  156 (223)
Q Consensus        81 ~fG~~~l~~~~~--~~~~~~e~~e~e~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~  156 (223)
                      +||+|+|+|+++  +++++||.||+|+|+..++++.+.  +..+++.-.++.+++.|+.++.+++|+|+++|.++|++||
T Consensus       142 iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFsltF~aEw  221 (294)
T KOG2881|consen  142 IFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFSLTFLAEW  221 (294)
T ss_pred             HHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHHHHHHHHh
Confidence            999999999975  566789999999999877655542  2222222223334566888889999999999999999999


Q ss_pred             cchHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH--HHHHHHHHHhhh
Q 027455          157 GDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFFNTTYQF  222 (223)
Q Consensus       157 GDKTQlati~LA~~~~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG~~~l~  222 (223)
                      |||||++||+||++.+|++|++|+.+||.+||++||++|+++++|||+|++.++  ++|++||+..+|
T Consensus       222 GDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~i~  289 (294)
T KOG2881|consen  222 GDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLVYIF  289 (294)
T ss_pred             ccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999  999999998775

>COG2119 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=3.2e-50  Score=338.13  Aligned_cols=180  Identities=36%  Similarity=0.571  Sum_probs=163.1

Q ss_pred             hHHHHHHHHHHHHhhccchHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHH
Q 027455            5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGL   84 (223)
Q Consensus         5 ~~~f~~~f~~iflaE~GDKTql~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~   84 (223)
                      ++.++.+.++|++||+|||||+++++||+||+|++|+.|+..|+..||.+++++|++....+|+++.++..+.+|++||+
T Consensus         1 l~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav   80 (190)
T COG2119           1 LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAV   80 (190)
T ss_pred             ChhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccCCCCchhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccchHHHHH
Q 027455           85 WSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLAT  164 (223)
Q Consensus        85 ~~l~~~~~~~~~~~e~~e~e~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDKTQlat  164 (223)
                      |+++|+.+++   +|   .+                          .+++      +.+|.++|+++|++|||||||++|
T Consensus        81 ~~l~edk~~~---~e---~~--------------------------~~~~------~~~f~~tfi~~FlaE~GDKTQiAT  122 (190)
T COG2119          81 WMLIEDKEDD---EE---AQ--------------------------AASP------RGVFVTTFITFFLAELGDKTQIAT  122 (190)
T ss_pred             HHhccccccc---cc---cc--------------------------cccc------ccHHHHHHHHHHHHHhccHHHHHH
Confidence            9999863211   11   00                          0111      257999999999999999999999


Q ss_pred             HHHhcccC-CcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH--HHHHHHHHHhhh
Q 027455          165 IGLAADEN-PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFFNTTYQF  222 (223)
Q Consensus       165 i~LA~~~~-~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG~~~l~  222 (223)
                      ++||++++ |+.|++|+++||++||.++|++|+++++|+|+|+++.+  ++|++||+..+|
T Consensus       123 IaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~  183 (190)
T COG2119         123 IALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLW  183 (190)
T ss_pred             HHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999975 69999999999999999999999999999999999999  999999987765

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.91  E-value=4.7e-25  Score=163.39  Aligned_cols=76  Identities=32%  Similarity=0.415  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHccC--CCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHH
Q 027455            8 FTKSLAMTVLSEIGDKTFFAAAILAMRH--PRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFG   83 (223)
Q Consensus         8 f~~~f~~iflaE~GDKTql~~~~LA~r~--~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG   83 (223)
                      |+++|.++|++|+|||||++++.||+||  +++.|++|+.+|++++|.++|++|+++.+++|++++++++|++|++||
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence            5789999999999999999999999999  667999999999999999999999999999999999999999999997

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.91  E-value=2e-24  Score=160.00  Aligned_cols=74  Identities=45%  Similarity=0.638  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHhccc--CCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH--HHHHHHH
Q 027455          144 FLKAFSITFFGEWGDKSQLATIGLAADE--NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFFN  217 (223)
Q Consensus       144 f~~af~l~FlaE~GDKTQlati~LA~~~--~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG  217 (223)
                      |+++|.++|++|||||||++|++||+||  +|+.|++|+.+|+++++.++|++|+++.+++|+++++++  ++|+.||
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence            5789999999999999999999999999  899999999999999999999999999999999999999  9999987

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.87  E-value=6.3e-22  Score=167.05  Aligned_cols=87  Identities=28%  Similarity=0.452  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHHHhhccchHHHHHHHHHccCCC-cEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHH
Q 027455            5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFG   83 (223)
Q Consensus         5 ~~~f~~~f~~iflaE~GDKTql~~~~LA~r~~~-~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG   83 (223)
                      ...|.++|.++|++|||||||++|+.||++|+. |.||+|+.+|+++||+++|+.|+++++++|++.++.++|++|++||
T Consensus        99 ~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa  178 (190)
T COG2119          99 RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA  178 (190)
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            558999999999999999999999999999997 7999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcc
Q 027455           84 LWSLWDAF   91 (223)
Q Consensus        84 ~~~l~~~~   91 (223)
                      +..+|+..
T Consensus       179 l~~~~~~~  186 (190)
T COG2119         179 LVLLWQVF  186 (190)
T ss_pred             HHHHHHHH
Confidence            99999863

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=99.72  E-value=2.5e-18  Score=151.94  Aligned_cols=87  Identities=28%  Similarity=0.328  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHHHhhccchHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHH
Q 027455            5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGL   84 (223)
Q Consensus         5 ~~~f~~~f~~iflaE~GDKTql~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~   84 (223)
                      ...|+.+|.++|++|||||+|++|+.||++-+++.|++|+.+|+.+||.++|..|++++++|+++.+.+++|++|+.||+
T Consensus       206 spifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl  285 (294)
T KOG2881|consen  206 SPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGL  285 (294)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHH
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcc
Q 027455           85 WSLWDAF   91 (223)
Q Consensus        85 ~~l~~~~   91 (223)
                      ..+++..
T Consensus       286 ~~i~~~~  292 (294)
T KOG2881|consen  286 VYIFQGF  292 (294)
T ss_pred             HHHhcCC
Confidence            9998763

>COG4280 Predicted membrane protein [Function unknown]

Probab=97.94  E-value=0.00011  Score=63.57  Aligned_cols=155  Identities=24%  Similarity=0.322  Sum_probs=101.7

Q ss_pred             CCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhccc------CCCCchhHHHHHHhhh
Q 027455           35 HPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS------DGGEAEEFEEVEKKLD  108 (223)
Q Consensus        35 ~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~------~~~~~~e~~e~e~~i~  108 (223)
                      ++.+.-+.|+.+|+++.-.++..+|+.+ +++|.+++++++|++.+.||-.-++...+      ..++||..   ||.+.
T Consensus        31 ~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~l---eE~~~  106 (236)
T COG4280          31 YKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEKL---EEGIV  106 (236)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhhH---hhhhh
Confidence            4455789999999999999999999998 89999999999999999999988876542      22233332   23333


Q ss_pred             hhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHhcc-cCCcEeehHHHHHHHHH
Q 027455          109 ADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD-ENPFGVVLGGIIGQALC  187 (223)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDKTQlati~LA~~-~~~~~V~~G~~~g~~l~  187 (223)
                      .|.++++                    ++   .-.+..+|-..-+ | |=.--+..++|.+. .++..-..|+..+..+.
T Consensus       107 ldq~e~g--------------------~~---~la~l~~fk~v~L-e-glEv~~iVialgaa~sqwleAi~gagfA~vlv  161 (236)
T COG4280         107 LDQEEEG--------------------FS---KLALLVVFKVVAL-E-GLEVSLIVIALGAASSQWLEAIMGAGFASVLV  161 (236)
T ss_pred             ccccccc--------------------ch---hhhHHHHhHHHHH-h-hheeeeeeeeechhhhHHHHHHHHHHHHHHHH
Confidence            2211100                    00   0123333322111 1 11122334445444 34556677888888888


Q ss_pred             HHHHHHHhHHhhhhccHHHHHHH--HHHHHHHHH
Q 027455          188 TTAAVIGGKSLASQISEKIVIMD--ICFFFFNTT  219 (223)
Q Consensus       188 t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG~~  219 (223)
                      -.++.++-+.++ |+|++.+|..  .+-..||.+
T Consensus       162 lvl~~~lh~pla-rvpe~~lKfvag~lL~sfGtf  194 (236)
T COG4280         162 LVLTAILHSPLA-RVPEPHLKFVAGALLFSFGTF  194 (236)
T ss_pred             HHHHHHhccHHh-hCCchhHHHHHHHHHHHhhHH
Confidence            888888877776 7999999999  666677764

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=97.78  E-value=0.0006  Score=58.91  Aligned_cols=49  Identities=16%  Similarity=0.424  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 027455           46 GALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDG   94 (223)
Q Consensus        46 ~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~~~   94 (223)
                      .-..+++.++..+|+.+.+++|+++-+++++++++++|++++++.++++
T Consensus        38 ~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~~   86 (206)
T TIGR02840        38 VISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRPK   86 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3445899999999999999999999999999999999999999998643

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>PRK11469 hypothetical protein; Provisional

Probab=97.69  E-value=0.00051  Score=58.69  Aligned_cols=45  Identities=18%  Similarity=0.279  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcccC
Q 027455           48 LIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSD   93 (223)
Q Consensus        48 l~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~~   93 (223)
                      ..++..++-..|+.+.+++|+ +-||+++.+.+..|.||++|++++
T Consensus        47 q~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~~~   91 (188)
T PRK11469         47 ETLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGFRG   91 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            367788888899999899777 779999999999999999999863

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=97.69  E-value=0.002  Score=53.54  Aligned_cols=67  Identities=12%  Similarity=0.043  Sum_probs=52.6

Q ss_pred             HHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccC--HHHHHHHHHHHHHHHHHHHhhhccc
Q 027455           26 FAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLIS--RKLTHHITTVLFFGFGLWSLWDAFS   92 (223)
Q Consensus        26 l~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp--~~~i~~~ag~lFl~fG~~~l~~~~~   92 (223)
                      +..+--+.+++++   .+.+|...+-.+...+++..-..+.+..|  ..+++++++...+.+|..++++..+
T Consensus        12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~   83 (191)
T PF01810_consen   12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFS   83 (191)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            4555666677653   58899999999998888887777766555  4578999999999999999988754

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>COG1971 Predicted membrane protein [Function unknown]

Probab=97.43  E-value=0.0025  Score=54.74  Aligned_cols=44  Identities=25%  Similarity=0.536  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhhhhcccC---HHHHHHHHHHHHHHHHHHHhhhcccC
Q 027455           50 VMTILSAVVGWVAPNLIS---RKLTHHITTVLFFGFGLWSLWDAFSD   93 (223)
Q Consensus        50 ~~t~lav~~G~~l~~~lp---~~~i~~~ag~lFl~fG~~~l~~~~~~   93 (223)
                      +-+.+.-++|.++++++|   ..+-||+++++....|++|+++++++
T Consensus        45 ~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~   91 (190)
T COG1971          45 VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKN   91 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            345566666666666666   67889999999999999999999874

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=97.09  E-value=0.004  Score=53.54  Aligned_cols=53  Identities=13%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             CcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455           37 RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        37 ~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      ++.|.+|-.+|..+.-..|...+..+ +++|++|+--.-|.+=+.+|++.++++
T Consensus        25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l-~~ip~~wiLGlLGliPI~lGi~~l~~~   77 (191)
T PF03596_consen   25 RRQIVIGQYLGFTILVLASLLGAFGL-LFIPPEWILGLLGLIPIYLGIKALFSG   77 (191)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            56899999999988888888877775 599999998889999999999988754

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>PRK10229 threonine efflux system; Provisional

Probab=96.02  E-value=0.51  Score=39.87  Aligned_cols=70  Identities=14%  Similarity=0.120  Sum_probs=50.8

Q ss_pred             ccchHHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccCH--HHHHHHHHHHHHHHHHHHhhhc
Q 027455           20 IGDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        20 ~GDKTql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp~--~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      -|. ..+.++.-+.+++++   ...+|...|..+...+++..-..+.+..|.  ..+++++++-.+.+|..++++.
T Consensus        19 PGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~~   93 (206)
T PRK10229         19 PGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRGA   93 (206)
T ss_pred             CCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            354 666777777777754   477889999988888877777666666663  4577777777777888888765

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=96.01  E-value=0.18  Score=41.71  Aligned_cols=64  Identities=13%  Similarity=0.025  Sum_probs=45.6

Q ss_pred             HHHHHHccCCC---cEeehhHHHHHHHHHHHHHHHHhhhhcccCH--HHHHHHHHHHHHHHHHHHhhhc
Q 027455           27 AAAILAMRHPR---RLVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        27 ~~~~LA~r~~~---~~V~~G~~~al~~~t~lav~~G~~l~~~lp~--~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      .++.-+.++++   ..+.+|..+|..+...+++..-..+-+..|.  .+++++++.-.+.+|..++++.
T Consensus         8 ~~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~   76 (185)
T TIGR00949         8 VVMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKK   76 (185)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34444555543   3588899999999988888766556566664  5678888877788998888754

>COG0730 Predicted permeases [General function prediction only]

Probab=96.00  E-value=0.37  Score=42.06  Aligned_cols=54  Identities=17%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             cEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455           38 RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF   91 (223)
Q Consensus        38 ~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~   91 (223)
                      ..+-.-...-+...+.++..+|.++..++|+++.+..-+.+.+..+++++++..
T Consensus        69 ~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~  122 (258)
T COG0730          69 GNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPR  122 (258)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            357777777888888999999999999999999999999999999999998753

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=95.65  E-value=0.73  Score=39.68  Aligned_cols=135  Identities=19%  Similarity=0.143  Sum_probs=82.4

Q ss_pred             eehhHHHHHHHHHHHHHHHHhhhhcc--cCHHHHHHHHHHHHHHHHHHHhhhcccCCCC-chhHHHHHHhhhhhhhhccC
Q 027455           40 VLSGCLGALIVMTILSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGGE-AEEFEEVEKKLDADFKANAG  116 (223)
Q Consensus        40 V~~G~~~al~~~t~lav~~G~~l~~~--lp~~~i~~~ag~lFl~fG~~~l~~~~~~~~~-~~e~~e~e~~i~~~~~~~~~  116 (223)
                      +..=+...-.+.-.+..++|+++-+.  ++....+..+|++.+..|+.|+....++++. ++|.+|.+   +      ..
T Consensus        39 ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~~~---~------~~  109 (203)
T PF01914_consen   39 IARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSPSSEKSSPDEKEEAK---D------AE  109 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCcccccccchhhhhc---c------cc
Confidence            33334444444555667788888775  4788899999999999999999865432111 11111000   0      00


Q ss_pred             cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHhcccCC---cEeehHHHHHHHHHHHHHHH
Q 027455          117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAVI  193 (223)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDKTQlati~LA~~~~~---~~V~~G~~~g~~l~t~laV~  193 (223)
                      +            .-        +.|       +.+--=-|.-|=-+++.++++++.   ..+.+++.+...+.+.+.-.
T Consensus       110 ~------------~a--------i~P-------La~PllaGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~  162 (203)
T PF01914_consen  110 D------------IA--------IVP-------LAIPLLAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILR  162 (203)
T ss_pred             c------------ce--------ecc-------cchhhccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0            00        011       011111255555566677777653   45566777788888888888


Q ss_pred             HhHHhhhhccHHHHHHH
Q 027455          194 GGKSLASQISEKIVIMD  210 (223)
Q Consensus       194 ~G~~~~~~i~~~~i~~~  210 (223)
                      .++++.+++.+.-++.+
T Consensus       163 ~a~~i~~~lG~~g~~vi  179 (203)
T PF01914_consen  163 FADKIMRRLGKTGLQVI  179 (203)
T ss_pred             HhHHHHHHhhhHHHHHH
Confidence            99999999998887766

These proteins may be transporters. ; GO: 0016021 integral to membrane

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=95.46  E-value=0.2  Score=43.11  Aligned_cols=74  Identities=11%  Similarity=0.048  Sum_probs=53.1

Q ss_pred             HHhhccchHHHHHHHHHccC---CCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455           16 VLSEIGDKTFFAAAILAMRH---PRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        16 flaE~GDKTql~~~~LA~r~---~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      +.|-==|--=+..+..|.+-   +++.+++|=.+|.+..-+.|.. +.+..+++|++|+--.-|..=+..|+|.++.+
T Consensus        12 y~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~-~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~   88 (205)
T COG4300          12 YIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLL-FAFVLNFVPEEWILGLLGLIPIYLGIKVLILG   88 (205)
T ss_pred             HHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHH-HHHHHhhCcHHHHHHHHhHHHHHHhhHHhhcc
Confidence            33443455555556666554   2357999998887766555544 44467889999999999999999999998865

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=95.43  E-value=1  Score=38.32  Aligned_cols=157  Identities=20%  Similarity=0.188  Sum_probs=88.3

Q ss_pred             cchHHHHHHHHHc---cCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 027455           21 GDKTFFAAAILAM---RHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEA   97 (223)
Q Consensus        21 GDKTql~~~~LA~---r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~~~~~~   97 (223)
                      +|+-.+.+++...   +++++..+.|...|++.=.++-.. |.++-+..  .++++++|+..+..|..++++..+.|+  
T Consensus        12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~-~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~~~~~d~--   86 (183)
T PF03741_consen   12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFL-ASWLLSIF--PWILLIGGLFLLYIAIKLLHEERDEDP--   86 (183)
T ss_pred             hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccc--
Confidence            5665555544333   233467999999998665555444 44443432  678888888888888888876542111  


Q ss_pred             hhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccch-----HHHHHHHHhcccC
Q 027455           98 EEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK-----SQLATIGLAADEN  172 (223)
Q Consensus        98 ~e~~e~e~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDK-----TQlati~LA~~~~  172 (223)
                       |.++.++ .+    +                ..+++      ...++.+..   .-|.=|=     |=++.++++  .+
T Consensus        87 -~~~~~~~-~~----~----------------~~~~~------~~~~~~~v~---~I~~~DlvfSlDSV~a~~~it--~~  133 (183)
T PF03741_consen   87 -ENAEVEE-EK----K----------------FFPVS------KSSLWLAVI---QIELADLVFSLDSVLAAVGIT--DD  133 (183)
T ss_pred             -chhhhhh-hh----c----------------cccch------hHHHHHHHH---HHHHHHHHHHHhHHHHHHHHh--hh
Confidence             1111110 00    0                00000      011333322   2233342     445666666  67


Q ss_pred             CcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH-HHHHH
Q 027455          173 PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD-ICFFF  215 (223)
Q Consensus       173 ~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~-~lFl~  215 (223)
                      ++.++.|..++....-..+-.+.+++.++-..++.-.. +.|++
T Consensus       134 ~~iv~~g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ig  177 (183)
T PF03741_consen  134 FFIVITGNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGFIG  177 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999888888888888765443333333 44433

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>PRK10621 hypothetical protein; Provisional

Probab=95.34  E-value=1.4  Score=38.99  Aligned_cols=51  Identities=22%  Similarity=0.303  Sum_probs=43.9

Q ss_pred             EeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhh
Q 027455           39 LVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD   89 (223)
Q Consensus        39 ~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~   89 (223)
                      .+=.-...-+.+.+++++.+|.++.+++|+++.+++-+++.+..++++++.
T Consensus        74 ~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~  124 (266)
T PRK10621         74 VVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM  124 (266)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            455666677888899999999999999999999999999888888888764

>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised

Probab=95.26  E-value=0.48  Score=40.35  Aligned_cols=48  Identities=15%  Similarity=0.260  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455           43 GCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        43 G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      =...-+....++++.+|.++...+|+++++...++.-+.++.++++..
T Consensus        64 ~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~  111 (240)
T PF01925_consen   64 KIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKK  111 (240)
T ss_pred             hhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344556778888999999999999999999999999999999998854

; GO: 0016021 integral to membrane

>PRK10995 inner membrane protein; Provisional

Probab=95.15  E-value=0.89  Score=39.55  Aligned_cols=44  Identities=9%  Similarity=0.061  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHhhhhccc--CHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455           48 LIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAF   91 (223)
Q Consensus        48 l~~~t~lav~~G~~l~~~l--p~~~i~~~ag~lFl~fG~~~l~~~~   91 (223)
                      -.+.-++..+.|+.+.+++  +....++.+|++.+.+|+.|+++..
T Consensus        51 a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~~   96 (221)
T PRK10995         51 VFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQQ   96 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3334446777788877755  6678999999999999999997653

>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake

Probab=94.26  E-value=2.7  Score=38.25  Aligned_cols=154  Identities=21%  Similarity=0.229  Sum_probs=87.2

Q ss_pred             CcEeehhHHHHHHHHHHHHHHHHhhhhcccC-----------HHHHHHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHH
Q 027455           37 RRLVLSGCLGALIVMTILSAVVGWVAPNLIS-----------RKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEK  105 (223)
Q Consensus        37 ~~~V~~G~~~al~~~t~lav~~G~~l~~~lp-----------~~~i~~~ag~lFl~fG~~~l~~~~~~~~~~~e~~e~e~  105 (223)
                      +++|+.|...|++.+-.++..+-..... ++           +..+..++.++-....+||.....+   .++   |.|+
T Consensus        35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~~-~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~~~---~~~---~~~~  107 (306)
T PF03239_consen   35 RRWVWLGVAAGLVASLVIGAVFAVIFYT-LSGDYWGISEELFEGAISLIAVALITWMVFWMRRHGRK---MKG---EWED  107 (306)
T ss_pred             hheeeecHhHHHHHHHHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hch---hHHH
Confidence            3689999999999999998887766533 33           2335666666777778888764321   111   1222


Q ss_pred             hhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHhcccC--CcEeehHHHHH
Q 027455          106 KLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN--PFGVVLGGIIG  183 (223)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDKTQlati~LA~~~~--~~~V~~G~~~g  183 (223)
                      ++++.-....+..+..     ......++     ....|..+|+ +.+=| |=-|=+-..++.+..+  ...+..|...|
T Consensus       108 ~~~~~~~~~~~~~~~~-----~~~~~~~~-----~~~l~~~afl-~vlRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G  175 (306)
T PF03239_consen  108 KLAKALSSGSEDARAS-----QKDEGGGS-----KWALFLLAFL-IVLRE-GLEAVLFLAALAASLRKDAASILLGAILG  175 (306)
T ss_pred             HHHHHHhhccchhhhh-----hhccccch-----hhHHHHHHHH-HHHHh-hHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            2221111100000000     00001111     1345666664 23333 4445555555555533  57788899999


Q ss_pred             HHHHHHHHHHHhHHhhhhccHHHHHHH
Q 027455          184 QALCTTAAVIGGKSLASQISEKIVIMD  210 (223)
Q Consensus       184 ~~l~t~laV~~G~~~~~~i~~~~i~~~  210 (223)
                      ..++..++.+.-+. ..++|.+..-.+
T Consensus       176 ~~~a~~~~~~~~~~-~~~i~~~~~f~~  201 (306)
T PF03239_consen  176 IAAAVVLGWLLYRG-LIRISLRSFFII  201 (306)
T ss_pred             HHHHHHHHHHHHHH-HHhcChHHHHHH
Confidence            99988888887665 457888877666

Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane

>TIGR00145 FTR1 family protein

Probab=94.10  E-value=3.9  Score=37.22  Aligned_cols=54  Identities=22%  Similarity=0.244  Sum_probs=40.0

Q ss_pred             CcEeehhHHHHHHHHHHHHHHHHhhhhcccC---HH----HHHHHHHHHHHHHHHHHhhhc
Q 027455           37 RRLVLSGCLGALIVMTILSAVVGWVAPNLIS---RK----LTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        37 ~~~V~~G~~~al~~~t~lav~~G~~l~~~lp---~~----~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      ++.|+.|+..|++++-++++++-......-.   ++    .+.+++.++-..+++||..++
T Consensus        38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~~~~   98 (283)
T TIGR00145        38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWMLRMQ   98 (283)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999999998888877665443322   23    467788888889999998543

A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=93.65  E-value=2.9  Score=38.52  Aligned_cols=77  Identities=22%  Similarity=0.279  Sum_probs=50.0

Q ss_pred             HHHHHHHHhhc---cchHHHHHHHHHcc-CC----CcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHH
Q 027455           10 KSLAMTVLSEI---GDKTFFAAAILAMR-HP----RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFG   81 (223)
Q Consensus        10 ~~f~~iflaE~---GDKTql~~~~LA~r-~~----~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~   81 (223)
                      ..|....+-|.   +|+-...++..+.+ -|    ++..+.|...|++.=.+. +.+|.++-+..  .++.++.|+..+.
T Consensus        63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~-i~~g~~Li~~f--~wi~~ifG~fLi~  139 (302)
T TIGR03718        63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIF-IALGAALIEQF--HWVLYIFGAFLLY  139 (302)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh--HHHHHHHHHHHHH
Confidence            44555566664   89999898888753 23    357888888887765544 45555554433  4677777766666


Q ss_pred             HHHHHhhh
Q 027455           82 FGLWSLWD   89 (223)
Q Consensus        82 fG~~~l~~   89 (223)
                      -|..++++
T Consensus       140 ~a~k~~~~  147 (302)
T TIGR03718       140 TGIKMLFE  147 (302)
T ss_pred             HHHHHHhh
Confidence            66666654

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=93.62  E-value=3.9  Score=34.50  Aligned_cols=69  Identities=12%  Similarity=0.036  Sum_probs=48.4

Q ss_pred             chHHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccCHH--HHHHHHHHHHHHHHHHHhhhc
Q 027455           22 DKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        22 DKTql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp~~--~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      .=..+..+.-+.+++++   ...+|...|..+...+++..-..+.+..|.-  +++++++.-.+.+|..++++.
T Consensus        21 GP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~   94 (205)
T PRK10520         21 GSGAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAA   94 (205)
T ss_pred             chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33455566666666643   5778999999998888776666555555543  567777777788999988764

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=93.30  E-value=4.2  Score=34.36  Aligned_cols=65  Identities=23%  Similarity=0.299  Sum_probs=46.3

Q ss_pred             cchHHHHHHHHHccCCC----cEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455           21 GDKTFFAAAILAMRHPR----RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        21 GDKTql~~~~LA~r~~~----~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      +|+-.+.++ .+.+.++    +....|...|++...+...... ++-+   -.+.++.+|++.+..|..++.+.
T Consensus        14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~-~ll~---~~~~~iaGGllLl~ia~~ml~~~   82 (176)
T TIGR03717        14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAV-YLLA---IPFLKLIGGLLLLWIGWKLLLEE   82 (176)
T ss_pred             HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---hHHHHHHHHHHHHHHHHHHHhcc
Confidence            688777766 2333332    4688899888888777665544 4444   37889999999999999888653

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK10958 leucine export protein LeuE; Provisional

Probab=93.00  E-value=5.3  Score=34.19  Aligned_cols=66  Identities=14%  Similarity=0.055  Sum_probs=44.4

Q ss_pred             HHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccCH--HHHHHHHHHHHHHHHHHHhhhcc
Q 027455           26 FAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDAF   91 (223)
Q Consensus        26 l~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp~--~~i~~~ag~lFl~fG~~~l~~~~   91 (223)
                      +..+.-+.+++++   ...+|..+|..+...+++..-..+.+..|.  ..++++++.-.+.+|...+++..
T Consensus        29 ~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~~~   99 (212)
T PRK10958         29 LYVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRAAL   99 (212)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445555566543   577899999888877777655445454553  35677777777889998887753

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=92.50  E-value=1.9  Score=37.72  Aligned_cols=143  Identities=22%  Similarity=0.240  Sum_probs=78.1

Q ss_pred             cchHHHHHHHHH---ccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 027455           21 GDKTFFAAAILA---MRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEA   97 (223)
Q Consensus        21 GDKTql~~~~LA---~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~~~~~~   97 (223)
                      +|+-.+++++-.   .+++++..+.|...|++.=-++.......+ +   ..++++++|+..+.-|..++++.-    ++
T Consensus         9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll-~---~~~l~~iGG~~Ll~~~~k~l~~~~----~~   80 (215)
T TIGR03716         9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLI-K---FWWIKAIGALYLLYLAIKHFRKKK----KG   80 (215)
T ss_pred             hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHhcc----cc
Confidence            466555555433   122335789999999887766665544444 3   237777777777777777776531    11


Q ss_pred             hhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccch-----HHHHHHHHhcccC
Q 027455           98 EEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK-----SQLATIGLAADEN  172 (223)
Q Consensus        98 ~e~~e~e~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDK-----TQlati~LA~~~~  172 (223)
                      ++.+|.+          .             ++..+         -|+.+.   ..-|.=|=     +=+|.++++  .+
T Consensus        81 ~~~~~~~----------~-------------~~~~~---------~f~~av---~~I~~~DlvFSlDSV~A~~git--~~  123 (215)
T TIGR03716        81 KEDEEAE----------K-------------KKAHS---------GFWRTV---LKVELMDIAFSVDSILAAVALS--GQ  123 (215)
T ss_pred             ccccccc----------c-------------ccccc---------hHHHHH---HHHHHHHHHHHhhhHHHHHHhc--cC
Confidence            1100000          0             00001         122222   22233332     334555554  67


Q ss_pred             CcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHH
Q 027455          173 PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVI  208 (223)
Q Consensus       173 ~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~  208 (223)
                      |+.++.|..++....-..+-+..+++.++-..++.-
T Consensus       124 ~~ii~~g~~~sIl~lr~~s~~l~~li~r~p~L~~~~  159 (215)
T TIGR03716       124 FWVVFLGGIIGILIMRFAATIFVKLLERFPELETAA  159 (215)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888988888887777777777766644333333

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=91.79  E-value=7.6  Score=33.23  Aligned_cols=66  Identities=12%  Similarity=0.044  Sum_probs=45.2

Q ss_pred             HHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHH-HhhhhcccC--HHHHHHHHHHHHHHHHHHHhhhc
Q 027455           24 TFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVV-GWVAPNLIS--RKLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        24 Tql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~-G~~l~~~lp--~~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      ..+.++.-+++++++   .+-+|...+..+...+++.. +..+ ..-|  -..++++++.-.+.+|..+++..
T Consensus        23 ~~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all-~~~~~~f~~lk~~GaaYL~ylg~~~~ra~   94 (208)
T COG1280          23 DNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALL-ATSPALFTVLKLAGAAYLLYLGWKALRAG   94 (208)
T ss_pred             cHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            445556667776653   68888888888877776664 2333 3333  24578888888888999888876

>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein

Probab=91.79  E-value=0.67  Score=40.03  Aligned_cols=55  Identities=16%  Similarity=0.202  Sum_probs=45.6

Q ss_pred             cCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhh
Q 027455           34 RHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD   89 (223)
Q Consensus        34 r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~   89 (223)
                      |++++.+.+|-.+|..+.-..|+..+.. ...+|++|+--.-|.+=+.+|++.+++
T Consensus        21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~g-l~~iP~~wIlGlLGliPI~lGi~~l~~   75 (193)
T TIGR00779        21 RKEYKDIYIGQYLGSIILILVSLLLAFG-VNLIPEKWVLGLLGLIPIYLGIKVAIK   75 (193)
T ss_pred             CCCeeEEEEeHHHHHHHHHHHHHHHHHH-HHhCCHHHHHhHHhHHHHHHHHHHHhc
Confidence            5667899999999988877777775554 368999999888889889999998876

These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).

>PRK09304 arginine exporter protein; Provisional

Probab=91.70  E-value=7.5  Score=33.00  Aligned_cols=65  Identities=11%  Similarity=0.013  Sum_probs=42.7

Q ss_pred             HHHHHHHccCCC-cEeehhHHHHHHHHHHHHHHHHhhhhcccCH--HHHHHHHHHHHHHHHHHHhhhc
Q 027455           26 FAAAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        26 l~~~~LA~r~~~-~~V~~G~~~al~~~t~lav~~G~~l~~~lp~--~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      +.++.-+.++++ .....|...+..+...+++..-..+-+..|.  ..++++++.-.+.+|..++++.
T Consensus        24 ~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~rs~   91 (207)
T PRK09304         24 AFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTA   91 (207)
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444556543 2577788888888877766665555555553  3467777777777898888764

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=90.21  E-value=10  Score=31.92  Aligned_cols=70  Identities=14%  Similarity=0.061  Sum_probs=47.2

Q ss_pred             cchHHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccCHH--HHHHHHHHHHHHHHHHHhhhc
Q 027455           21 GDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        21 GDKTql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp~~--~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      ..=+.+..+.-+.+++++   ....|...|..+...++......+.+..|.-  .++++++.-.+..|..+++.+
T Consensus        20 PGP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~   94 (195)
T PRK10323         20 PGPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP   94 (195)
T ss_pred             CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344556666667777653   5889999999998777775554555555533  466666666677998888753

>TIGR00948 2a75 L-lysine exporter

Probab=90.19  E-value=8.2  Score=31.72  Aligned_cols=64  Identities=9%  Similarity=0.054  Sum_probs=45.9

Q ss_pred             HHHHHccCCC-cEeehhHHHHHHHHHHHHHHHHhhhhcccCH--HHHHHHHHHHHHHHHHHHhhhcc
Q 027455           28 AAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDAF   91 (223)
Q Consensus        28 ~~~LA~r~~~-~~V~~G~~~al~~~t~lav~~G~~l~~~lp~--~~i~~~ag~lFl~fG~~~l~~~~   91 (223)
                      ++.-+.|+++ ....+|...|..+...++++.-..+.+..|.  .++++++++-.+.+|..++++..
T Consensus        12 vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~   78 (177)
T TIGR00948        12 VLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW   78 (177)
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555544 3588899999988888887777766666664  35777777777889999988753

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=89.05  E-value=18  Score=33.01  Aligned_cols=75  Identities=17%  Similarity=0.299  Sum_probs=44.5

Q ss_pred             hhccchHHHHHHHHHccCCC--cEeehhHHHHHHH--HHHHHHHHHhhhhcccC----HHHHHHHHHHHHHHHHHHHhhh
Q 027455           18 SEIGDKTFFAAAILAMRHPR--RLVLSGCLGALIV--MTILSAVVGWVAPNLIS----RKLTHHITTVLFFGFGLWSLWD   89 (223)
Q Consensus        18 aE~GDKTql~~~~LA~r~~~--~~V~~G~~~al~~--~t~lav~~G~~l~~~lp----~~~i~~~ag~lFl~fG~~~l~~   89 (223)
                      .|-|----+++.-++++.++  ..+.+|...++.=  .-.+.++++-.+.+.+|    ..+...+++++-+.+|+|++|.
T Consensus        29 lgPGHGKavi~sYlv~~~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~~~~~~~~~~~~le~~S~~lii~lGl~ll~r  108 (279)
T PRK10019         29 LEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMYLSRRFTAQSAEPWLQLISAVIIISTAFWMFWR  108 (279)
T ss_pred             cCCCcchHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35554444445555554333  3566666655442  22222223333455555    4688999999999999999987


Q ss_pred             ccc
Q 027455           90 AFS   92 (223)
Q Consensus        90 ~~~   92 (223)
                      .++
T Consensus       109 ~~r  111 (279)
T PRK10019        109 TWR  111 (279)
T ss_pred             HHH
Confidence            653

>TIGR00427 membrane protein, MarC family

Probab=85.25  E-value=10  Score=32.56  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=36.8

Q ss_pred             EeehhHHHHHHHHHHHHHHHHhhhhccc--CHHHHHHHHHHHHHHHHHHHhhhc
Q 027455           39 LVLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        39 ~V~~G~~~al~~~t~lav~~G~~l~~~l--p~~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      ...-.+..+.+++ ++..+.|+++-+++  +....+..+|++.+..|+.|+...
T Consensus        42 ia~~~~l~a~~il-l~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~   94 (201)
T TIGR00427        42 IAKKANISSFIIL-LIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE   94 (201)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3444444444444 36677788877754  777899999999999999998653

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>COG4280 Predicted membrane protein [Function unknown]

Probab=83.85  E-value=3  Score=36.60  Aligned_cols=58  Identities=17%  Similarity=0.234  Sum_probs=49.2

Q ss_pred             HHHHHHHHhcc--cCCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH--HHHHHHHH
Q 027455          160 SQLATIGLAAD--ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFFNT  218 (223)
Q Consensus       160 TQlati~LA~~--~~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG~  218 (223)
                      +..-+|+.+-.  +++..-+.|+.+|+++.-.++..+|+.+. .+|.++++++  ++-+.||-
T Consensus        18 vEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L~-lvPln~lqiv~gvLLllFG~   79 (236)
T COG4280          18 VEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLLY-LVPLNYLQIVSGVLLLLFGY   79 (236)
T ss_pred             HHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHcccee-eeechHHHHHHHHHHHHHHH
Confidence            45667777744  56777899999999999999999999876 8999999999  88888884

>PRK11111 hypothetical protein; Provisional

Probab=83.25  E-value=17  Score=31.71  Aligned_cols=50  Identities=18%  Similarity=0.184  Sum_probs=37.4

Q ss_pred             eehhHHHHHHHHHHHHHHHHhhhhccc--CHHHHHHHHHHHHHHHHHHHhhhc
Q 027455           40 VLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        40 V~~G~~~al~~~t~lav~~G~~l~~~l--p~~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      .+-.+..+.++. .+..++|+++-+++  +....++.+|++.+.+|+.|++..
T Consensus        46 a~~a~l~a~~il-l~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~   97 (214)
T PRK11111         46 NLTANLSVAIIL-LISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK   97 (214)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            444444444444 46788899988865  777899999999999999999654

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=82.70  E-value=6.4  Score=32.41  Aligned_cols=48  Identities=21%  Similarity=0.400  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcccCH---HHHHHHHHHHHHHHHHHHhhhc
Q 027455           43 GCLGALIVMTILSAVVGWVAPNLISR---KLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        43 G~~~al~~~t~lav~~G~~l~~~lp~---~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      |...+..+...+-...++.+.+++..   +++..++|++++.+|++.++++
T Consensus       141 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g  191 (191)
T PF01810_consen  141 GIFLGSLLWFLLLALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG  191 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44444444444444444444444433   3889999999999999998864

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>PRK10739 putative antibiotic transporter; Provisional

Probab=81.10  E-value=35  Score=29.36  Aligned_cols=50  Identities=10%  Similarity=0.157  Sum_probs=36.7

Q ss_pred             eehhHHHHHHHHHHHHHHHHhhhhccc--CHHHHHHHHHHHHHHHHHHHhhhc
Q 027455           40 VLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDA   90 (223)
Q Consensus        40 V~~G~~~al~~~t~lav~~G~~l~~~l--p~~~i~~~ag~lFl~fG~~~l~~~   90 (223)
                      .+-.+..+. +.-.+..++|+.+-+++  +....++.+|++.+.+|+.|+.+.
T Consensus        40 a~~a~~~a~-~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~   91 (197)
T PRK10739         40 MIRELLIAL-LVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS   91 (197)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            333444444 44447778888887754  778899999999999999999654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00