Citrus Sinensis ID: 027467

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGSNPSL
cHHHHHHcccEEEEEcccccccccEEEEEEEcccccEEEEccccccccccccccccccccccccccEEEccccEEEEEEEccccHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccEEEEEEEEEEcccccEEEEccccccEEEEEEccHHHHHHHHHHccccccccHHHHHHHHHcccccccc
cHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccEccEEEEcccccccccEHHHHcccccccccEEEEccEEEEEccHHHHHcHHHHHHHHHccccEEEccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEccccEccccccccccEEEEEcEEEEcccccEEEEccccccEEEEEEEcHHHHHHHHHHccccccccHHHHHHHHccccccccc
MQELAKELGvvmpvsffeeannahynsiaiidadgsdlglyrkshipdgpgyqekfyfnpgdtgfKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEIlfyptaigsepqddgldsrdHWRRVMQGHAGANVVPLVasnrigkeiietehgksqitfygnsfiagptgeivaaadDKEEAVLVAQFDLdklkskrsswgvfrdrrPELYKVLLTldgsnpsl
MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQghaganvvplvaSNRIGKEIietehgksqITFYGNSFIAGPTGEIVAAADDKEEAVLVAQfdldklkskrsswgvfrdrrpELYKVlltldgsnpsl
MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGSNPSL
*******LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIG***********DHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTL*******
*QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLD******
MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGSNPSL
MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTL*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGSNPSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query223 2.2.26 [Sep-21-2011]
Q3HVN1300 N-carbamoylputrescine ami N/A no 0.991 0.736 0.923 1e-121
Q9XGI9300 N-carbamoylputrescine ami N/A no 0.991 0.736 0.918 1e-121
Q8VYF5326 N-carbamoylputrescine ami no no 0.982 0.671 0.926 1e-120
Q93XI4301 N-carbamoylputrescine ami yes no 0.977 0.724 0.834 1e-110
O59829272 Probable nitrilase C965.0 yes no 0.798 0.654 0.381 6e-30
P60327304 N-carbamoyl-D-amino acid N/A no 0.919 0.674 0.337 2e-22
Q8VDK1323 Nitrilase homolog 1 OS=Mu yes no 0.878 0.606 0.309 6e-22
Q44185304 N-carbamoyl-D-amino acid yes no 0.905 0.664 0.333 1e-21
Q7TQ94292 Nitrilase homolog 1 OS=Ra no no 0.878 0.671 0.300 1e-20
Q32LH4328 Nitrilase homolog 1 OS=Bo yes no 0.865 0.588 0.318 2e-20
>sp|Q3HVN1|AGUB_SOLTU N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1 Back     alignment and function desciption
 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/221 (92%), Positives = 214/221 (96%)

Query: 1   MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNP 60
           MQ LAKELGVV+PVSFFEEANNAHYNS+AIIDADG+DLGLYRKSHIPDGPGYQEKFYFNP
Sbjct: 78  MQNLAKELGVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNP 137

Query: 61  GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDH 120
           GDTGFKVFQTK+AKIGVAICWDQWFPEAARAM LQGAE+LFYPTAIGSEPQDDGLDSRDH
Sbjct: 138 GDTGFKVFQTKYAKIGVAICWDQWFPEAARAMALQGAEVLFYPTAIGSEPQDDGLDSRDH 197

Query: 121 WRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEE 180
           WRRVMQGHAGANVVPLVASNRIGKEIIETEHG S+ITFYG SFIAGPTGE+VAAA DKEE
Sbjct: 198 WRRVMQGHAGANVVPLVASNRIGKEIIETEHGNSEITFYGYSFIAGPTGELVAAAGDKEE 257

Query: 181 AVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGSNP 221
           AVLVAQFDLDK+KSKR  WGV+RDRRP+LYKVLLTLDGSNP
Sbjct: 258 AVLVAQFDLDKIKSKRHGWGVYRDRRPDLYKVLLTLDGSNP 298
Involved in polyamine biosynthesis.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 3
>sp|Q9XGI9|AGUB_SOLLC N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1 Back     alignment and function description
>sp|Q8VYF5|AGUB_ARATH N-carbamoylputrescine amidase OS=Arabidopsis thaliana GN=CPA PE=1 SV=1 Back     alignment and function description
>sp|Q93XI4|AGUB_ORYSJ N-carbamoylputrescine amidase OS=Oryza sativa subsp. japonica GN=CPA PE=2 SV=1 Back     alignment and function description
>sp|O59829|YCU9_SCHPO Probable nitrilase C965.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC965.09 PE=4 SV=1 Back     alignment and function description
>sp|P60327|DCAS_AGRSK N-carbamoyl-D-amino acid hydrolase OS=Agrobacterium sp. (strain KNK712) PE=1 SV=1 Back     alignment and function description
>sp|Q8VDK1|NIT1_MOUSE Nitrilase homolog 1 OS=Mus musculus GN=Nit1 PE=2 SV=2 Back     alignment and function description
>sp|Q44185|DCAS_RHIRD N-carbamoyl-D-amino acid hydrolase OS=Rhizobium radiobacter PE=1 SV=1 Back     alignment and function description
>sp|Q7TQ94|NIT1_RAT Nitrilase homolog 1 OS=Rattus norvegicus GN=Nit1 PE=2 SV=1 Back     alignment and function description
>sp|Q32LH4|NIT1_BOVIN Nitrilase homolog 1 OS=Bos taurus GN=NIT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
118572820300 RecName: Full=N-carbamoylputrescine amid 0.991 0.736 0.923 1e-120
350539283300 N-carbamoylputrescine amidase [Solanum l 0.991 0.736 0.918 1e-119
449443458300 PREDICTED: N-carbamoylputrescine amidase 1.0 0.743 0.923 1e-119
224131816301 predicted protein [Populus trichocarpa] 1.0 0.740 0.905 1e-118
18401429299 N-carbamoylputrescine amidase [Arabidops 0.982 0.732 0.926 1e-118
30683525 326 N-carbamoylputrescine amidase [Arabidops 0.982 0.671 0.926 1e-118
388497486300 unknown [Lotus japonicus] 0.991 0.736 0.904 1e-118
225464926311 PREDICTED: N-carbamoylputrescine amidase 0.991 0.710 0.904 1e-118
296084900297 unnamed protein product [Vitis vinifera] 0.991 0.744 0.904 1e-118
356543606299 PREDICTED: N-carbamoylputrescine amidase 0.991 0.739 0.895 1e-118
>gi|118572820|sp|Q3HVN1.1|AGUB_SOLTU RecName: Full=N-carbamoylputrescine amidase gi|76160960|gb|ABA40443.1| beta-alanine synthase-like protein [Solanum tuberosum] Back     alignment and taxonomy information
 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/221 (92%), Positives = 214/221 (96%)

Query: 1   MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNP 60
           MQ LAKELGVV+PVSFFEEANNAHYNS+AIIDADG+DLGLYRKSHIPDGPGYQEKFYFNP
Sbjct: 78  MQNLAKELGVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNP 137

Query: 61  GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDH 120
           GDTGFKVFQTK+AKIGVAICWDQWFPEAARAM LQGAE+LFYPTAIGSEPQDDGLDSRDH
Sbjct: 138 GDTGFKVFQTKYAKIGVAICWDQWFPEAARAMALQGAEVLFYPTAIGSEPQDDGLDSRDH 197

Query: 121 WRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEE 180
           WRRVMQGHAGANVVPLVASNRIGKEIIETEHG S+ITFYG SFIAGPTGE+VAAA DKEE
Sbjct: 198 WRRVMQGHAGANVVPLVASNRIGKEIIETEHGNSEITFYGYSFIAGPTGELVAAAGDKEE 257

Query: 181 AVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGSNP 221
           AVLVAQFDLDK+KSKR  WGV+RDRRP+LYKVLLTLDGSNP
Sbjct: 258 AVLVAQFDLDKIKSKRHGWGVYRDRRPDLYKVLLTLDGSNP 298

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|350539283|ref|NP_001234385.1| N-carbamoylputrescine amidase [Solanum lycopersicum] gi|75267500|sp|Q9XGI9.1|AGUB_SOLLC RecName: Full=N-carbamoylputrescine amidase gi|5262946|emb|CAB45873.1| beta-alanine synthase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449443458|ref|XP_004139494.1| PREDICTED: N-carbamoylputrescine amidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224131816|ref|XP_002328115.1| predicted protein [Populus trichocarpa] gi|118489609|gb|ABK96606.1| unknown [Populus trichocarpa x Populus deltoides] gi|222837630|gb|EEE75995.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18401429|ref|NP_565650.1| N-carbamoylputrescine amidase [Arabidopsis thaliana] gi|20197650|gb|AAD15597.2| putative nitrilase [Arabidopsis thaliana] gi|21554187|gb|AAM63266.1| putative nitrilase [Arabidopsis thaliana] gi|222424030|dbj|BAH19976.1| AT2G27450 [Arabidopsis thaliana] gi|330252903|gb|AEC07997.1| N-carbamoylputrescine amidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30683525|ref|NP_850101.1| N-carbamoylputrescine amidase [Arabidopsis thaliana] gi|75248484|sp|Q8VYF5.1|AGUB_ARATH RecName: Full=N-carbamoylputrescine amidase; AltName: Full=Nitrilase-like protein 1 gi|18175830|gb|AAL59935.1| putative nitrilase [Arabidopsis thaliana] gi|21689871|gb|AAM67496.1| putative nitrilase [Arabidopsis thaliana] gi|330252904|gb|AEC07998.1| N-carbamoylputrescine amidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388497486|gb|AFK36809.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225464926|ref|XP_002274913.1| PREDICTED: N-carbamoylputrescine amidase [Vitis vinifera] Back     alignment and taxonomy information
>gi|296084900|emb|CBI28309.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356543606|ref|XP_003540251.1| PREDICTED: N-carbamoylputrescine amidase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
TAIR|locus:2038623326 NLP1 "nitrilase-like protein 1 0.982 0.671 0.926 1.3e-109
UNIPROTKB|Q48Q56292 PSPPH_0152 "Carbon-nitrogen hy 0.959 0.732 0.697 1.4e-80
TIGR_CMR|GSU_1027294 GSU_1027 "glycosyl hydrolase, 0.941 0.714 0.465 2e-49
TIGR_CMR|CJE_1025290 CJE_1025 "hydrolase, carbon-ni 0.914 0.703 0.441 5.7e-43
POMBASE|SPCC965.09272 SPCC965.09 "nitrilase family p 0.798 0.654 0.381 2.4e-28
WB|WBGene00017440387 upb-1 [Caenorhabditis elegans 0.919 0.529 0.321 1.6e-22
UNIPROTKB|Q9NQR4276 NIT2 "Omega-amidase NIT2" [Hom 0.883 0.713 0.321 1e-20
MGI|MGI:1350916323 Nit1 "nitrilase 1" [Mus muscul 0.869 0.600 0.310 1.7e-20
FB|FBgn0037513386 pyd3 "pyd3" [Drosophila melano 0.901 0.520 0.325 1.7e-20
UNIPROTKB|F1SKY2283 NIT2 "Uncharacterized protein" 0.883 0.696 0.321 2.7e-20
TAIR|locus:2038623 NLP1 "nitrilase-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
 Identities = 203/219 (92%), Positives = 211/219 (96%)

Query:     1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNP 60
             MQ+LAKELGVV+PVSFFEEAN AHYNSIAIIDADG+DLG+YRKSHIPDGPGYQEKFYFNP
Sbjct:   107 MQKLAKELGVVIPVSFFEEANTAHYNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNP 166

Query:    61 GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDH 120
             GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQD GLDSRDH
Sbjct:   167 GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDQGLDSRDH 226

Query:   121 WRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEE 180
             WRRVMQGHAGANVVPLVASNRIGKEIIETEHG SQITFYG SFIAGPTGEIVA ADDK E
Sbjct:   227 WRRVMQGHAGANVVPLVASNRIGKEIIETEHGPSQITFYGTSFIAGPTGEIVAEADDKSE 286

Query:   181 AVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGS 219
             AVLVAQFDLD +KSKR SWGVFRDRRP+LYKVLLT+DG+
Sbjct:   287 AVLVAQFDLDMIKSKRQSWGVFRDRRPDLYKVLLTMDGN 325
GO:0006596 "polyamine biosynthetic process" evidence=IEA
GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS
GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS
GO:0050126 "N-carbamoylputrescine amidase activity" evidence=IEA;IDA
GO:0009446 "putrescine biosynthetic process" evidence=TAS
UNIPROTKB|Q48Q56 PSPPH_0152 "Carbon-nitrogen hydrolase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1027 GSU_1027 "glycosyl hydrolase, family 10" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1025 CJE_1025 "hydrolase, carbon-nitrogen family" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
POMBASE|SPCC965.09 SPCC965.09 "nitrilase family protein, omega-amidase related (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
WB|WBGene00017440 upb-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQR4 NIT2 "Omega-amidase NIT2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1350916 Nit1 "nitrilase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0037513 pyd3 "pyd3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SKY2 NIT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3HVN1AGUB_SOLTU3, ., 5, ., 1, ., 5, 30.92300.99100.7366N/Ano
Q9XGI9AGUB_SOLLC3, ., 5, ., 1, ., 5, 30.91850.99100.7366N/Ano
Q93XI4AGUB_ORYSJ3, ., 5, ., 1, ., 5, 30.83480.97750.7242yesno
Q8VYF5AGUB_ARATH3, ., 5, ., 1, ., 5, 30.92690.98200.6717nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.530.991
3rd Layer3.5.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00660157
N-carbamolyputrescine amidohydrolase (EC-3.5.1.53) (301 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_820017
agmatine iminohydrolase (EC-3.5.3.12) (381 aa)
•••  •• 0.994
estExt_Genewise1_v1.C_LG_IV0804
arginine decarboxylase (EC-4.1.1.19) (731 aa)
•     • 0.682
gw1.164.182.1
hypothetical protein (484 aa)
•     • 0.509
eugene3.29010002
Predicted protein (267 aa)
•     • 0.442
gw1.III.614.1
GMP synthetase (EC-6.3.5.2) (434 aa)
•     • 0.434
grail3.0003090402
SubName- Full=Putative uncharacterized protein; (193 aa)
•       0.433
eugene3.80240002
Predicted protein (250 aa)
      • 0.426
estExt_fgenesh4_pm.C_LG_X0357
spermidine synthase (335 aa)
•    •• 0.423
grail3.0009003101
spermidine synthase (335 aa)
•    •• 0.413
gw1.I.1992.1
dihydropyrimidinase (EC-3.5.2.2) (504 aa)
•    •• 0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
PLN02747296 PLN02747, PLN02747, N-carbamolyputrescine amidase 1e-173
TIGR03381279 TIGR03381, agmatine_aguB, N-carbamoylputrescine am 1e-151
cd07573284 cd07573, CPA, N-carbamoylputrescine amidohydrolase 1e-148
cd07197253 cd07197, nitrilase, Nitrilase superfamily, includi 3e-64
cd07568287 cd07568, ML_beta-AS_like, mammalian-like beta-alan 6e-60
COG0388274 COG0388, COG0388, Predicted amidohydrolase [Genera 1e-59
cd07577259 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 3e-49
cd07580268 cd07580, nitrilase_2, Uncharacterized subgroup of 4e-45
cd07584258 cd07584, nitrilase_6, Uncharacterized subgroup of 5e-43
cd07585261 cd07585, nitrilase_7, Uncharacterized subgroup of 5e-41
pfam00795172 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase 1e-37
cd07586269 cd07586, nitrilase_8, Uncharacterized subgroup of 3e-37
cd07576254 cd07576, R-amidase_like, Pseudomonas sp 4e-37
cd07583253 cd07583, nitrilase_5, Uncharacterized subgroup of 1e-36
cd07569302 cd07569, DCase, N-carbamyl-D-amino acid amidohydro 6e-36
cd07572265 cd07572, nit, Nit1, Nit 2, and related proteins, a 1e-34
cd07581255 cd07581, nitrilase_3, Uncharacterized subgroup of 8e-33
cd07587363 cd07587, ML_beta-AS, mammalian-like beta-alanine s 1e-26
PLN00202405 PLN00202, PLN00202, beta-ureidopropionase 2e-25
cd07574280 cd07574, nitrilase_Rim1_like, Uncharacterized subg 3e-23
cd07570261 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe 5e-23
cd07564297 cd07564, nitrilases_CHs, Nitrilases, cyanide hydra 1e-22
PRK13981 540 PRK13981, PRK13981, NAD synthetase; Provisional 1e-20
cd07578258 cd07578, nitrilase_1_R1, First nitrilase domain of 8e-20
PLN02798286 PLN02798, PLN02798, nitrilase 9e-20
cd07582294 cd07582, nitrilase_4, Uncharacterized subgroup of 2e-16
cd07579279 cd07579, nitrilase_1_R2, Second nitrilase domain o 4e-14
cd07565291 cd07565, aliphatic_amidase, aliphatic amidases (cl 8e-11
TIGR00546391 TIGR00546, lnt, apolipoprotein N-acyltransferase 1e-10
cd07571270 cd07571, ALP_N-acyl_transferase, Apolipoprotein N- 7e-10
PRK13287333 PRK13287, amiF, formamidase; Provisional 1e-09
PLN02504346 PLN02504, PLN02504, nitrilase 7e-09
TIGR04048301 TIGR04048, nitrile_sll0784, putative nitrilase, sl 2e-08
PRK00302505 PRK00302, lnt, apolipoprotein N-acyltransferase; R 5e-08
COG0815518 COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce 2e-07
PRK10438256 PRK10438, PRK10438, C-N hydrolase family amidase; 3e-05
cd07575252 cd07575, Xc-1258_like, Xanthomonas campestris XC12 1e-04
>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase Back     alignment and domain information 
 Score =  478 bits (1231), Expect = e-173
 Identities = 197/220 (89%), Positives = 211/220 (95%)

Query: 1   MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNP 60
           MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLGLYRKSHIPDGPGYQEKFYFNP
Sbjct: 77  MQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNP 136

Query: 61  GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDH 120
           GDTGFKVF TKFAKIGVAICWDQWFPEAARAMVLQGAE+L YPTAIGSEPQD GLDSRDH
Sbjct: 137 GDTGFKVFDTKFAKIGVAICWDQWFPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDH 196

Query: 121 WRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEE 180
           W+RVMQGHAGAN+VPLVASNRIG EI+ETEHG S+ITFYG SFIAGPTGEIVA ADDK E
Sbjct: 197 WKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITFYGGSFIAGPTGEIVAEADDKAE 256

Query: 181 AVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGSN 220
           AVLVA+FDLD++KSKR+SWGVFRDRRP+LYKVLLTLDG+ 
Sbjct: 257 AVLVAEFDLDQIKSKRASWGVFRDRRPDLYKVLLTLDGNK 296

Length = 296
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase Back     alignment and domain information
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase Back     alignment and domain information
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp Back     alignment and domain information
>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase Back     alignment and domain information
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|215428 PLN02798, PLN02798, nitrilase Back     alignment and domain information
>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143589 cd07565, aliphatic_amidase, aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase Back     alignment and domain information
>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>gnl|CDD|183950 PRK13287, amiF, formamidase; Provisional Back     alignment and domain information
>gnl|CDD|178120 PLN02504, PLN02504, nitrilase Back     alignment and domain information
>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family Back     alignment and domain information
>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|182461 PRK10438, PRK10438, C-N hydrolase family amidase; Provisional Back     alignment and domain information
>gnl|CDD|143599 cd07575, Xc-1258_like, Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 223
TIGR03381279 agmatine_aguB N-carbamoylputrescine amidase. Membe 100.0
cd07587363 ML_beta-AS mammalian-like beta-alanine synthase (b 100.0
PLN02747296 N-carbamolyputrescine amidase 100.0
PLN00202405 beta-ureidopropionase 100.0
cd07568287 ML_beta-AS_like mammalian-like beta-alanine syntha 100.0
cd07573284 CPA N-carbamoylputrescine amidohydrolase (CPA) (cl 100.0
PRK10438256 C-N hydrolase family amidase; Provisional 100.0
cd07569302 DCase N-carbamyl-D-amino acid amidohydrolase (DCas 100.0
cd07564297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 100.0
PLN02504346 nitrilase 100.0
cd07586269 nitrilase_8 Uncharacterized subgroup of the nitril 100.0
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 100.0
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 100.0
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 100.0
cd07579279 nitrilase_1_R2 Second nitrilase domain of an uncha 100.0
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 100.0
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 100.0
cd07577259 Ph0642_like Pyrococcus horikoshii Ph0642 and relat 100.0
PLN02798286 nitrilase 100.0
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 100.0
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 100.0
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 100.0
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 100.0
cd07570261 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, 100.0
cd07582294 nitrilase_4 Uncharacterized subgroup of the nitril 100.0
PRK13286345 amiE acylamide amidohydrolase; Provisional 100.0
cd07575252 Xc-1258_like Xanthomonas campestris XC1258 and rel 100.0
cd07578258 nitrilase_1_R1 First nitrilase domain of an unchar 100.0
cd07574280 nitrilase_Rim1_like Uncharacterized subgroup of th 100.0
PRK13287333 amiF formamidase; Provisional 100.0
cd07197253 nitrilase Nitrilase superfamily, including nitrile 100.0
COG0388274 Predicted amidohydrolase [General function predict 100.0
KOG0807295 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
cd07571270 ALP_N-acyl_transferase Apolipoprotein N-acyl trans 100.0
PRK13981 540 NAD synthetase; Provisional 100.0
PRK02628 679 nadE NAD synthetase; Reviewed 100.0
KOG0806298 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.97
PLN02339 700 NAD+ synthase (glutamine-hydrolysing) 99.97
PRK00302505 lnt apolipoprotein N-acyltransferase; Reviewed 99.97
KOG0808387 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.97
KOG0805337 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.97
cd07566295 ScNTA1_like Saccharomyces cerevisiae N-terminal am 99.96
TIGR00546391 lnt apolipoprotein N-acyltransferase. This enzyme 99.96
COG0815518 Lnt Apolipoprotein N-acyltransferase [Cell envelop 99.92
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 99.9
PRK12291418 apolipoprotein N-acyltransferase; Reviewed 99.9
PRK13825388 conjugal transfer protein TraB; Provisional 99.84
KOG2303 706 consensus Predicted NAD synthase, contains CN hydr 99.44
PLN02798 286 nitrilase 85.22
PF09587250 PGA_cap: Bacterial capsule synthesis protein PGA_c 84.47
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 83.37
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 81.82
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 81.36
cd07567 299 biotinidase_like biotinidase and vanins (class 4 n 81.33
TIGR03381 279 agmatine_aguB N-carbamoylputrescine amidase. Membe 81.32
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 81.23
cd07568 287 ML_beta-AS_like mammalian-like beta-alanine syntha 81.21
cd07572 265 nit Nit1, Nit 2, and related proteins, and the Nit 80.74
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information 
Probab=100.00  E-value=2e-45  Score=302.94  Aligned_cols=208  Identities=73%  Similarity=1.241  Sum_probs=186.2

Q ss_pred             CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467            1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC   80 (223)
Q Consensus         1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC   80 (223)
                      |+++|++++++|++|+++++++++||++++|+|+|+++++|+|+||+..+.+.|..+|++|...+.+|+++++|+|++||
T Consensus        71 l~~~a~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC  150 (279)
T TIGR03381        71 FQALAKELGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGIC  150 (279)
T ss_pred             HHHHHHHcCcEEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEE
Confidence            46899999999999999988889999999999999999999999998765677888999997447899999999999999


Q ss_pred             ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467           81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG  160 (223)
Q Consensus        81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G  160 (223)
                      ||++|||+++.++++|||++++|++|+..+++.......+|..+.++||+||++|++.||++|....    ..++..|.|
T Consensus       151 ~D~~fpe~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~----~~~~~~~~G  226 (279)
T TIGR03381       151 WDQWFPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVG----DGGEQTFYG  226 (279)
T ss_pred             cCCcChHHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCC----CCCcceEee
Confidence            9999999999999999999999999876655544445678999999999999999999999996521    012567999


Q ss_pred             eeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHHH
Q 027467          161 NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKV  212 (223)
Q Consensus       161 ~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~  212 (223)
                      .|+|++|+|+++++++.+++++++++||++.++..|..+++++++|+++|+.
T Consensus       227 ~S~i~~p~G~il~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~r~~~y~~  278 (279)
T TIGR03381       227 SSFIADHTGELVAEAGRSEEAVLVATFDLDEIAKQRAAWGFFRDRRPELYGP  278 (279)
T ss_pred             eEEEECCCCcEeecCCCCCCceEEEEeCHHHHHHHHhcCchhhhCChhhccC
Confidence            9999999999999998888999999999999999999999999999999974

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>PLN00202 beta-ureidopropionase Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>PRK10438 C-N hydrolase family amidase; Provisional Back     alignment and domain information
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>PLN02504 nitrilase Back     alignment and domain information
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>PRK13287 amiF formamidase; Provisional Back     alignment and domain information
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>COG0388 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>TIGR00546 lnt apolipoprotein N-acyltransferase Back     alignment and domain information
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>PRK12291 apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>PRK13825 conjugal transfer protein TraB; Provisional Back     alignment and domain information
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
1j31_A262 Crystal Structure Of Hypothetical Protein Ph0642 Fr 1e-29
3ivz_A262 Crystal Structure Of Hyperthermophilic Nitrilase Le 8e-27
1erz_A303 Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh 2e-23
2ggk_A304 The Mutant A302c Of Agrobacterium Radiobacter N-Car 6e-23
1fo6_A304 Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A 7e-23
2ggl_A304 The Mutant A222c Of Agrobacterium Radiobacter N-Car 9e-23
2vhh_A405 Crystal Structure Of A Pyrimidine Degrading Enzyme 6e-22
1uf4_A303 Crystal Structure Of C171aV236A MUTANT OF N-Carbamy 1e-21
2w1v_A276 Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso 8e-18
1f89_A291 Crystal Structure Of Saccharomyces Cerevisiae Nit3, 6e-16
1ems_A 440 Crystal Structure Of The C. Elegans Nitfhit Protein 1e-12
3p8k_A281 Crystal Structure Of A Putative Carbon-Nitrogen Fam 6e-09
3hkx_A283 Crystal Structure Analysis Of An Amidase From Neste 1e-08
4f4h_A 565 Crystal Structure Of A Glutamine Dependent Nad+ Syn 3e-08
2dyu_A334 Helicobacter Pylori Formamidase Amif Contains A Fin 6e-06
2plq_A348 Crystal Structure Of The Amidase From Geobacillus P 1e-05
3n05_A 590 Crystal Structure Of Nh3-Dependent Nad+ Synthetase 2e-05
2uxy_A341 Aliphatic Amidase Length = 341 5e-05
2e2k_A334 Helicobacter Pylori Formamidase Amif Contains A Fin 1e-04
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262 Back     alignment and structure 
Iteration: 1

 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 25/212 (11%)
Query: 1   MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNP 60
           + ELA+ELG+ +     E++ N  YNS  ++   G  +G YRK H+     Y+EK +F P
Sbjct: 72  LXELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGY-IGKYRKIHL----FYREKVFFEP 126
Query: 61  GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDH 120
           GD GFKVF   FAK+GV IC+D +FPE+AR + L+GAEI+ +P  +             +
Sbjct: 127 GDLGFKVFDIGFAKVGVXICFDWFFPESARTLALKGAEIIAHPANL----------VXPY 176
Query: 121 WRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEE 180
             R     A  N V  + ++R+G+E          + F G S IA P  E+++ A + EE
Sbjct: 177 APRAXPIRALENRVYTITADRVGEE--------RGLKFIGKSLIASPKAEVLSIASETEE 228
Query: 181 AVLVAQFDLDKLKSKR--SSWGVFRDRRPELY 210
            + V + DL+  ++KR      +F+DRR E Y
Sbjct: 229 EIGVVEIDLNLARNKRLNDXNDIFKDRREEYY 260
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262 Back     alignment and structure
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303 Back     alignment and structure
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405 Back     alignment and structure
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D- Amino Acid Amidohydrolase Length = 303 Back     alignment and structure
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276 Back     alignment and structure
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A Member Of Branch 10 Of The Nitrilase Superfamily Length = 291 Back     alignment and structure
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440 Back     alignment and structure
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family Hydrolase From Staphylococcus Aureus Length = 281 Back     alignment and structure
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From Nesterenkonia Sp Length = 283 Back     alignment and structure
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase From Burkholderia Thailandensis Length = 565 Back     alignment and structure
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned Cysteine- Glutamate-lysine Catalytic Triad Length = 334 Back     alignment and structure
>pdb|2PLQ|A Chain A, Crystal Structure Of The Amidase From Geobacillus Pallidus Rapc8 Length = 348 Back     alignment and structure
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From Streptomyces Avermitilis Length = 590 Back     alignment and structure
>pdb|2UXY|A Chain A, Aliphatic Amidase Length = 341 Back     alignment and structure
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned Cysteine- Glutamate-Lysine Catalytic Triad Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 1e-109
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 1e-102
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1e-101
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 4e-94
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 8e-94
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 5e-66
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 9e-53
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 2e-51
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 3e-40
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 2e-37
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 8e-36
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 1e-24
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 6e-20
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 3e-19
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 2e-18
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405 Back     alignment and structure
 Score =  319 bits (820), Expect = e-109
 Identities = 66/226 (29%), Positives = 100/226 (44%), Gaps = 17/226 (7%)

Query: 1   MQELAKELGVVMPVSFFEE---ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFY 57
           + ELAK   +V+  S  E         +N+  +I   G  LG +RK+HIP    + E  Y
Sbjct: 152 LAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTY 211

Query: 58  FNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDS 117
           +  G+TG  VF+T+F K+ V IC+ +  P+      L GAEI+F P+A            
Sbjct: 212 YMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLS------ 265

Query: 118 RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEH--------GKSQITFYGNSFIAGPTG 169
              W    +  A AN    V  NR+G E    E+         K    FYG+S++A P G
Sbjct: 266 EPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDG 325

Query: 170 EIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 215
               +    ++ +LV + DL+  +  +  WG    +R  LY     
Sbjct: 326 SRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLYAESFK 371
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334 Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341 Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281 Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276 Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 100.0
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 100.0
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 100.0
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 100.0
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 100.0
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 100.0
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 100.0
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 100.0
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 100.0
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 100.0
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 100.0
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 100.0
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 100.0
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
Probab=100.00  E-value=3.1e-45  Score=300.95  Aligned_cols=192  Identities=23%  Similarity=0.430  Sum_probs=176.5

Q ss_pred             CHHHHHHcCcEEeeeee-eecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCc-ceEee-CCceEEE
Q 027467            1 MQELAKELGVVMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF-KVFQT-KFAKIGV   77 (223)
Q Consensus         1 l~~~A~~~~i~i~~G~~-~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~-~~~~~-~~~~ig~   77 (223)
                      |+++|++++++|++|++ ++.++++||++++|+|+|++++.|+|+||++.  |.|..+|.+|+. . .+|++ +++|||+
T Consensus        87 l~~la~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--f~E~~~f~~G~~-~~~v~~~~~~~~ig~  163 (281)
T 3p8k_A           87 IKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHEFLTAGEY-VAEPFQLSDGTYVTQ  163 (281)
T ss_dssp             HHHHHHHHTCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTT--TTGGGTCCCCSS-CCCCEECTTCCEEEE
T ss_pred             HHHHHhhCCeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCC--cCccccCcCCCC-CceeEEeCCCcEEEE
Confidence            46899999999999975 66788999999999999999999999999863  579999999996 6 89999 9999999


Q ss_pred             EEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCccee
Q 027467           78 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQIT  157 (223)
Q Consensus        78 ~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~  157 (223)
                      +||||++|||+++.++.+|+|+|++|++|+.       ....+|..+.++||+||++||+.||++|...        +..
T Consensus       164 ~IC~D~~fpe~~r~~~~~Gadli~~psa~~~-------~~~~~~~~~~~arA~en~~~vv~~n~~G~~~--------~~~  228 (281)
T 3p8k_A          164 LICYDLRFPELLRYPARSGAKIAFYVAQWPM-------SRLQHWHSLLKARAIENNMFVIGTNSTGFDG--------NTE  228 (281)
T ss_dssp             EEGGGGGCTHHHHHHHHTTCCEEEEEECCBG-------GGHHHHHHHHHHHHHHHTSEEEEEECEEECS--------SCE
T ss_pred             EEecCCCCcHHHHHHHHCCCCEEEECCCCCC-------ccHHHHHHHHHHHHHHcCCEEEEEccCcCCC--------CcE
Confidence            9999999999999999999999999999753       2368899999999999999999999999653        578


Q ss_pred             eeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHH
Q 027467          158 FYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYK  211 (223)
Q Consensus       158 ~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~  211 (223)
                      |.|.|+|++|+|+++++ +.+++++++++||++.++..|+.+++++++|+|+|+
T Consensus       229 ~~G~S~ii~p~G~vl~~-~~~~e~~l~~~id~~~~~~~R~~~p~~~~rr~~lY~  281 (281)
T 3p8k_A          229 YAGHSIVINPNGDLVGE-LNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK  281 (281)
T ss_dssp             EECCCEEECTTSCEEEE-CCSSCEEEEEEEETHHHHHHHHHSCGGGTCCTTTCC
T ss_pred             EeeeEEEECCCCCEEEe-cCCCCeEEEEEEcHHHHHHHHHhCcchhhcChhhcC
Confidence            99999999999999999 778899999999999999999999999999999994
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 223
d1uf5a_303 d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol 5e-38
d1j31a_262 d.160.1.2 (A:) Hypothetical protein PH0642 {Archae 3e-34
d1emsa2271 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te 5e-23
d1f89a_281 d.160.1.1 (A:) hypothetical protein yl85 {Baker's 3e-16
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score =  132 bits (331), Expect = 5e-38
 Identities = 76/233 (32%), Positives = 107/233 (45%), Gaps = 26/233 (11%)

Query: 1   MQELAKELGVVMPVSFF----EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE-- 54
           + E A ELG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+   
Sbjct: 80  LFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYR 139

Query: 55  ------KFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFY----PT 104
                 K YF PGD GF V+    AK+G+ I  D+ +PEA R M L+GAEI+      PT
Sbjct: 140 PFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPT 199

Query: 105 AIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFI 164
                PQ D L S  H    MQ  +  N     A+ + G E              G+S I
Sbjct: 200 HNPPVPQHDHLTSF-HHLLSMQAGSYQNGAWSAAAGKAGMEE--------NCMLLGHSCI 250

Query: 165 AGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVF-RDRRPELYKVLLTL 216
             PTGEIVA     E+ V+ A  DLD+ +  R     F + R+P+ Y ++  L
Sbjct: 251 VAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL 303
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262 Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 100.0
d1j31a_262 Hypothetical protein PH0642 {Archaeon Pyrococcus h 100.0
d1f89a_281 hypothetical protein yl85 {Baker's yeast (Saccharo 100.0
d1emsa2271 NIT-FHIT fusion protein, N-terminal domain {Nemato 100.0
d1emsa2 271 NIT-FHIT fusion protein, N-terminal domain {Nemato 86.19
d1uf5a_ 303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 84.14
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=100.00  E-value=1.3e-42  Score=285.98  Aligned_cols=207  Identities=33%  Similarity=0.475  Sum_probs=177.0

Q ss_pred             CHHHHHHcCcEEeeeeeee----cCCceeEEEEEECCCCceeeeeeccCCCCCCCCc--------ccccccCCCCCcceE
Q 027467            1 MQELAKELGVVMPVSFFEE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVF   68 (223)
Q Consensus         1 l~~~A~~~~i~i~~G~~~~----~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~--------e~~~~~~G~~~~~~~   68 (223)
                      ++++|++++++|++|+.++    .++++||++++|+|+|+++++|+|+||++++++.        |..+|.++.....+|
T Consensus        80 ~~~~A~~~~i~i~~G~~~~~~~~~~~~~yNs~~li~~~G~i~~~y~K~~L~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~  159 (303)
T d1uf5a_          80 LFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVY  159 (303)
T ss_dssp             HHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSCSCEE
T ss_pred             HHHHHHhcCceEEEEeeeeeeecCCCeeEEEEEeeccccccccccccccCCCCccccccccccccccceecccCCcceeE
Confidence            3678999999999998764    2458999999999999999999999999876654        444566666567899


Q ss_pred             eeCCceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCC---CcHHHHHHHHHHHHhhcCceEEEEcCCCcc
Q 027467           69 QTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGL---DSRDHWRRVMQGHAGANVVPLVASNRIGKE  145 (223)
Q Consensus        69 ~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~---~~~~~~~~~~~~rA~e~~~~vv~an~~G~~  145 (223)
                      +++++|||++||||.+|||+++.++.+||+++++|++|+........   ....+|....++||+||++||+.+|++|.+
T Consensus       160 ~~~~~rig~~IC~D~~~pe~~~~la~~Ga~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~g~~  239 (303)
T d1uf5a_         160 DVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGME  239 (303)
T ss_dssp             EETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEEEEEEBCEEE
T ss_pred             EecCcEEEeeccccchhhHhhhhHhhCCCEEEEEeccccccCCcccccchhhcchhhhhhhhhhhcccceeeeccccccc
Confidence            99999999999999999999999999999999999987543221111   123567778899999999999999999865


Q ss_pred             ccccccCCcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcc-cccchhHHHHhHh
Q 027467          146 IIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVF-RDRRPELYKVLLT  215 (223)
Q Consensus       146 ~~~~~~g~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~-~~~r~~~y~~~~~  215 (223)
                      .        +..|.|.|+|++|+|+++++++.++|++++++||++.++..|..++.+ .+||||+|+.|++
T Consensus       240 ~--------~~~~~G~S~I~~p~G~vla~~~~~~e~vl~a~idl~~~~~~R~~~~~~~~~rr~d~y~~~~~  302 (303)
T d1uf5a_         240 E--------NCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAE  302 (303)
T ss_dssp             T--------TEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHHHTTTTCHHHHCCGGGCGGGGC
T ss_pred             c--------ccccccCcEEEeCCCCEEEECCCCCCEEEEEEEcHHHHHHHHHhCCchhhcCChhhhhHhhc
Confidence            4        678999999999999999999988999999999999999999988777 7799999999975
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure