Citrus Sinensis ID: 027469

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MACLSLTAATRISKTPTISSKSQFPTKFNERLQFISIKPKNSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFTD
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccccccccEEccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHcccccEEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccEEEEEEcccHHHHHHHHHHHHHHccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccccEEEEEcccEEEEEccccccHccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHcccccEEEEEccccEEEEEEEcccccccccHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHcHHHHEEEEcc
Coil and Loop (DISEMBL)
MACLSLTaatrisktptissksqfptkFNERLQfisikpknsvlqksgshetairasnpsapagsspglysahqfdltakNVDLVLEDVRpyliadggnidvvSVEDGVVSVKlqgacgscpsstttmSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDcivkyvgpdsiASGIRAAIKekfpdienvvftd
Flexible Loop (DISEMBL)
MACLSLTAatrisktptissksqfptKFNERLQFISIKPKNSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLqgacgscpsstttmsMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEavnghldilRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAaikekfpdienvvftd
Low Complexity Region (SEG)
MACLSLTAATRISKTPTISSKSQFPTKFNERLQFISIKPKNSVLQKSGSHETAIRasnpsapagsspgLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIdvvsvedgvvsvKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFTD
Disordered region (IsUnstruct)
*********************************************************************YSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVV***
Disordered Region (DISOPRED)
*********TRISKTPTISSKSQFPTKFNERLQFISIKPKNSVLQKSGSH*************************DLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRET*******************GGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFTD
Disordered Region (DISEMBL)
MACLSLTAATRISKTPTISSKSQFPTKFNERLQFISIKPKN***************************LYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFTD
Disordered Region (DISPRO)
*ACLSLTAATRISKTPTISSKSQFPTKFNERLQFISIKPKNSVLQKSGSHETAIRAS**************AHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFTD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACLSLTAATRISKTPTISSKSQFPTKFNERLQFISIKPKNSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q93W77	231	NifU-like protein 1, chlo	yes	no	0.914	0.883	0.661	2e-74
Q93W20	235	NifU-like protein 2, chlo	no	no	0.650	0.617	0.394	8e-22
Q84LK7	226	NifU-like protein 1, chlo	no	no	0.726	0.716	0.391	2e-21
Q84RQ7	236	NifU-like protein 3, chlo	no	no	0.618	0.584	0.380	2e-18
P33179	112	Nitrogen fixation protein	N/A	no	0.439	0.875	0.375	1e-12
O32119	111	Putative nitrogen fixatio	yes	no	0.255	0.513	0.526	8e-12
Q43885	300	Nitrogen fixation protein	no	no	0.421	0.313	0.388	2e-10
P20628	300	Nitrogen fixation protein	no	no	0.421	0.313	0.388	2e-10
Q9UMS0	254	NFU1 iron-sulfur cluster	yes	no	0.560	0.492	0.320	1e-09
B4JWR9	298	NFU1 iron-sulfur cluster	N/A	no	0.286	0.214	0.415	5e-09

>sp|Q93W77|NIFU1_ARATH NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/210 (66%), Positives = 165/210 (78%), Gaps = 6/210 (2%)

Query: 19  SSKSQFPTKFNERLQFISIKPKNSVLQKSG-SHETAIRASNPSA-----PAGSSPGLYSA 72
           S+++ FP   ++   F+    K   + ++   H +AI  S+         +G S GLYSA
Sbjct: 21  STRNGFPVISDQNPSFVLFANKRRHISRTAIFHRSAISGSSQGEKISPLASGVSSGLYSA 80

Query: 73  HQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGI 132
             FDLT +NVDLVLEDVRP+LI+DGGN+DVVSVEDGVVS+KLQGAC SCPSS+TTM+MGI
Sbjct: 81  QTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGI 140

Query: 133 ERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCI 192
           ERVLKEKFGDA+KDIRQV+DEEV++ TVEAVN HLDILRPAIKNYGGSVEVLSVE  DC+
Sbjct: 141 ERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRPAIKNYGGSVEVLSVEGEDCV 200

Query: 193 VKYVGPDSIASGIRAAIKEKFPDIENVVFT 222
           VKYVGP+SI  GI+AAIKEKF DI NV FT
Sbjct: 201 VKYVGPESIGMGIQAAIKEKFKDISNVTFT 230

Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93W20|NIFU2_ARATH NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1

 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 91/152 (59%), Gaps = 7/152 (4%)

Query: 74  QFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIE 133
           +  LT +NV+ VL+++RPYL++DGGN+ +  ++  +V VKLQGACGSCPSST TM MGIE
Sbjct: 82  EVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIE 141

Query: 134 RVLKEKFGDAIKDIRQVYDEEV-RETTVEAVNGHLDILRP-AIKNYGGSVEVLSVESGDC 191
           R L EK  + +  +  + DEE   E   E +   L+ +RP  I    GS++++ +E    
Sbjct: 142 RRLMEKIPEIVA-VEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIV 200

Query: 192 IVKYVGPDSIASGIRAAI----KEKFPDIENV 219
            ++  GP +    +R A+    +EK P I  V
Sbjct: 201 KIRITGPAAGVMTVRVAVTQKLREKIPSIAAV 232

Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins. Required for biogenesis of ferredoxin, a major photosynthetic electron carrier containing [2Fe-2S] cluster. Required for the assembly of photosystem I complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84LK7|NIFU1_ORYSJ NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 9/171 (5%)

Query: 57  SNPSAPAGSSPGL--YSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKL 114
             P    G+  GL   +A Q  LTA NV+ VL+ VRPYL ADGG++ +  +   VV +KL
Sbjct: 53  QRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKL 112

Query: 115 QGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV-RETTVEAVNGHLDILRPA 173
           QGACGSCPSS  T+  GIER L EK  D +  +  V D+E   E   E V   L+ +RP 
Sbjct: 113 QGACGSCPSSLITIKRGIERRLMEKIPD-VAAVEPVTDKETGLELNEENVEKVLNEIRPY 171

Query: 174 IKNY-GGSVEVLSVESGDCIVKYVGPDSIASGIRAAI----KEKFPDIENV 219
           +    GG ++ L ++     V+  GP ++   +R A+    +EK P I+ V
Sbjct: 172 LAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIV 222

Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84RQ7|NIFU3_ARATH NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 4/142 (2%)

Query: 77  LTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVL 136
           LT +NV+ VL++VRP L+ADGGN+ +  ++  VV +KLQGACGSCPSS+ T+ MGIE  L
Sbjct: 84  LTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 143

Query: 137 KEKFGDAIKDIRQVYDEEV--RETTVEAVNGHLDILRPAIKNY-GGSVEVLSVESGDCIV 193
           ++K  + I  + Q  + E    E   E +   L  LRP +    GG +E++ ++     V
Sbjct: 144 RDKIPE-IMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKV 202

Query: 194 KYVGPDSIASGIRAAIKEKFPD 215
           +  GP +    +R A+ +K  +
Sbjct: 203 RLTGPAAGVMTVRVALTQKLRE 224

Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|P33179|NIFU_ANASL Nitrogen fixation protein NifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 6/104 (5%)

Query: 37  IKPKNSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIAD 96
           +K KN+V   +  +   +  +   A +G    L +  +  L  K +D   E+VRP LIAD
Sbjct: 6   VKEKNAV---TNLNTKGVNLTKEIANSGQKRALTNVQKIALIQKVLD---EEVRPVLIAD 59

Query: 97  GGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKF 140
           GG++++  V+  +V V LQGACGSCPSST T+ + IE  L+++ 
Sbjct: 60  GGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Anabaena sp. (strain L31) (taxid: 29412)

>sp|O32119|YUTI_BACSU Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) GN=yutI PE=3 SV=1

 Score = 70.5 bits (171), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 44/57 (77%)

Query: 80  KNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVL 136
           + V  VL+ +RP+L+ DGG+ ++V V++G+V ++L GACGSCPSST T+  GIER L
Sbjct: 41  EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERAL 97

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q43885|NIFU_TRIAZ Nitrogen fixation protein NifU OS=Trichormus azollae GN=nifU PE=3 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 38  KPKNSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADG 97
           K   ++  K GS  T I  S    P      L +  +  L  K +D   E+VRP LIADG
Sbjct: 198 KAATNLNNKGGSKPTNIPNSGQKRP------LTNVQKIALIQKVLD---EEVRPVLIADG 248

Query: 98  GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKF 140
           G++++  V+  +V V LQGACGSC SST T+ + IE  L+++ 
Sbjct: 249 GDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Anabaena azollae (taxid: 1164)

>sp|P20628|NIFU_NOSS1 Nitrogen fixation protein NifU OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=nifU PE=3 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 38  KPKNSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADG 97
           K   ++  K GS  T I  S    P      L +  +  L  K +D   E+VRP LIADG
Sbjct: 198 KAATNLNNKGGSKPTNIPNSGQKRP------LTNVQKIALIQKVLD---EEVRPVLIADG 248

Query: 98  GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKF 140
           G++++  V+  +V V LQGACGSC SST T+ + IE  L+++ 
Sbjct: 249 GDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q9UMS0|NFU1_HUMAN NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Homo sapiens GN=NFU1 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)

Query: 26  TKFNERLQFISIKPK--NSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVD 83
           TK NE L +  +KP    +++    S    +    PS  AGS          ++ A   +
Sbjct: 122 TKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSE------EDDEVVAMIKE 175

Query: 84  LVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDA 143
           L+   +RP +  DGG++     EDG+V +KLQG+C SCPSS  T+  GI+ +L + +   
Sbjct: 176 LLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNML-QFYIPE 234

Query: 144 IKDIRQVYDEEVRE 157
           ++ + QV D+E  E
Sbjct: 235 VEGVEQVMDDESDE 248

Iron-sulfur cluster scaffold protein which can assemble [4Fe-2S] clusters and deliver them to target proteins.

Homo sapiens (taxid: 9606)

>sp|B4JWR9|NFU1_DROGR NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila grimshawi GN=GH17809 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 89  VRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIR 148
           +RP +  DGG+I  +S E GVV +K+QG+C SCPSS  T+  G++ +L + +   ++ + 
Sbjct: 202 IRPTVQEDGGDIVFISYEKGVVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIPEVESVE 260

Query: 149 QVYDE 153
           QV+DE
Sbjct: 261 QVFDE 265

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila grimshawi (taxid: 7222)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
225437626	213	PREDICTED: nifU-like protein 1, chloropl	0.919	0.962	0.727	7e-85
224064633	216	predicted protein [Populus trichocarpa]	0.834	0.861	0.739	9e-75
255548369	210	Nitrogen fixation protein nifU, putative	0.932	0.990	0.674	5e-74
351727691	221	uncharacterized protein LOC100527356 [Gl	0.748	0.755	0.820	7e-74
18411785	231	NifU-like protein 1 [Arabidopsis thalian	0.914	0.883	0.661	1e-72
357511421	216	NifU-like protein [Medicago truncatula]	0.798	0.824	0.748	1e-72
449436401	220	PREDICTED: nifU-like protein 1, chloropl	0.762	0.772	0.767	1e-70
224130940	220	predicted protein [Populus trichocarpa]	0.959	0.972	0.617	2e-69
388492810	225	unknown [Lotus japonicus]	0.695	0.688	0.819	4e-69
388501170	211	unknown [Lotus japonicus]	0.704	0.744	0.808	1e-68

>gi|225437626|ref|XP_002278510.1| PREDICTED: nifU-like protein 1, chloroplastic [Vitis vinifera] gi|297744011|emb|CBI36981.3| unnamed protein product [Vitis vinifera]

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 160/220 (72%), Positives = 184/220 (83%), Gaps = 15/220 (6%)

Query: 4   LSLTAATRISKTPTISSKSQFPTKFNERLQFISIKPKNSVLQKSGSHETAIRASNPSAPA 63
           LS  +A R+SKT     K+Q           + +KP  +VLQ+     TAI+ASNPSAP+
Sbjct: 9   LSQNSAFRLSKTSVKPQKNQ---------PIVRLKPLRTVLQR-----TAIKASNPSAPS 54

Query: 64  GSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPS 123
           GS PGLYSAH+F+LTAKNVDLVLEDVRPYLI+DGGN+DVVSVEDGV+S+KLQGACGSCPS
Sbjct: 55  GS-PGLYSAHKFELTAKNVDLVLEDVRPYLISDGGNVDVVSVEDGVISLKLQGACGSCPS 113

Query: 124 STTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEV 183
           STTTM+MGIERVLKEKFGDA+KDIRQVYDE+  ETTVEAVN HLDILRPAIKNYG SV+V
Sbjct: 114 STTTMTMGIERVLKEKFGDAVKDIRQVYDEQTGETTVEAVNRHLDILRPAIKNYGSSVDV 173

Query: 184 LSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFTD 223
           LS+E GDC+VKY GP+SI SGI+AAIKEKFPDI NVVF+D
Sbjct: 174 LSIEGGDCLVKYTGPESIGSGIKAAIKEKFPDIVNVVFSD 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064633|ref|XP_002301529.1| predicted protein [Populus trichocarpa] gi|222843255|gb|EEE80802.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 166/192 (86%), Gaps = 6/192 (3%)

Query: 33  QFISIKPKNSVLQKSGS---HETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDV 89
           Q ++IK + ++L  +G    H+TAI+A+ P+    SSPGLYSA QF+L  +NVDLVLE+V
Sbjct: 26  QSLTIK-QRTLLPGTGRRIFHKTAIKATAPTG--SSSPGLYSAQQFELNPQNVDLVLEEV 82

Query: 90  RPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQ 149
           RPYLIADGGN+DVVSVEDGV+S+KLQGACG CPSSTTTM MGIERVLKEKFGDAIKDIRQ
Sbjct: 83  RPYLIADGGNVDVVSVEDGVISLKLQGACGDCPSSTTTMKMGIERVLKEKFGDAIKDIRQ 142

Query: 150 VYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAI 209
           V DEE +ETTVE VNGHLDILRPAI N+GGSVEVLSVE+G+C V+Y GP+SIASGI+AAI
Sbjct: 143 VSDEESKETTVERVNGHLDILRPAITNFGGSVEVLSVENGECRVQYTGPESIASGIKAAI 202

Query: 210 KEKFPDIENVVF 221
           KEKFPDI +VVF
Sbjct: 203 KEKFPDIVDVVF 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548369|ref|XP_002515241.1| Nitrogen fixation protein nifU, putative [Ricinus communis] gi|223545721|gb|EEF47225.1| Nitrogen fixation protein nifU, putative [Ricinus communis]

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 149/221 (67%), Positives = 175/221 (79%), Gaps = 13/221 (5%)

Query: 1   MACLSLTAATRISKTPTISSKSQFPTKFNERLQFISIKPKNSVLQKSGSHETAIRASNPS 60
           MA L+ TA ++I   P    K   P   +   Q I++K +  VL K     TAI+A+  S
Sbjct: 1   MASLAFTAPSKI---PPYCPK--IPANTHRYPQSITMKTR-VVLSK-----TAIKAT--S 47

Query: 61  APAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGS 120
                SPGLYSA +F+LT +NVDLVLEDVRPYLIADGGN+DVVSVEDGV+S++LQGACGS
Sbjct: 48  QTGSQSPGLYSAQKFELTPENVDLVLEDVRPYLIADGGNVDVVSVEDGVISLQLQGACGS 107

Query: 121 CPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGS 180
           CPSSTTTM MGIERVLKEKFGD++KDIRQV DEEV+ETT EAVN HLDILRPAIKNYGGS
Sbjct: 108 CPSSTTTMKMGIERVLKEKFGDSVKDIRQVNDEEVKETTPEAVNRHLDILRPAIKNYGGS 167

Query: 181 VEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVF 221
           VEV+S+ESG+C+VKY GP+SI SGI+AAIKEKFP+I NVV 
Sbjct: 168 VEVVSIESGECLVKYSGPESIGSGIKAAIKEKFPEITNVVL 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727691|ref|NP_001238705.1| uncharacterized protein LOC100527356 [Glycine max] gi|255632161|gb|ACU16433.1| unknown [Glycine max]

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 137/167 (82%), Positives = 150/167 (89%)

Query: 56  ASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQ 115
           ASNP+    SSPGLYSA +FDLTA NVDLVL+DVRPYLIADGGN+DVVSVEDGVVS++L+
Sbjct: 52  ASNPNQNESSSPGLYSAKKFDLTASNVDLVLDDVRPYLIADGGNVDVVSVEDGVVSLRLE 111

Query: 116 GACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIK 175
           GAC SCPSSTTTM+MGIERVLKEKFGDA+KDIRQVY  E RETTVEAVN HL+ILRPAIK
Sbjct: 112 GACESCPSSTTTMTMGIERVLKEKFGDAVKDIRQVYLTEPRETTVEAVNNHLEILRPAIK 171

Query: 176 NYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFT 222
           NYGGSVEV+SVE G+C VKYVGPDSI SGI+A IKEKFPDI NV FT
Sbjct: 172 NYGGSVEVVSVEGGECEVKYVGPDSIGSGIKATIKEKFPDILNVTFT 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411785|ref|NP_567219.1| NifU-like protein 1 [Arabidopsis thaliana] gi|75163233|sp|Q93W77.1|NIFU1_ARATH RecName: Full=NifU-like protein 1, chloroplastic; Short=AtCNfu1; Short=AtCnfU-IVb; Flags: Precursor gi|14517434|gb|AAK62607.1| AT4g01940/T7B11_20 [Arabidopsis thaliana] gi|15215670|gb|AAK91380.1| AT4g01940/T7B11_20 [Arabidopsis thaliana] gi|20908090|gb|AAM26728.1| AT4g01940/T7B11_20 [Arabidopsis thaliana] gi|28207816|emb|CAD55558.1| NFU1 protein [Arabidopsis thaliana] gi|332656703|gb|AEE82103.1| NifU-like protein 1 [Arabidopsis thaliana]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 139/210 (66%), Positives = 165/210 (78%), Gaps = 6/210 (2%)

Query: 19  SSKSQFPTKFNERLQFISIKPKNSVLQKSG-SHETAIRASNPSA-----PAGSSPGLYSA 72
           S+++ FP   ++   F+    K   + ++   H +AI  S+         +G S GLYSA
Sbjct: 21  STRNGFPVISDQNPSFVLFANKRRHISRTAIFHRSAISGSSQGEKISPLASGVSSGLYSA 80

Query: 73  HQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGI 132
             FDLT +NVDLVLEDVRP+LI+DGGN+DVVSVEDGVVS+KLQGAC SCPSS+TTM+MGI
Sbjct: 81  QTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGI 140

Query: 133 ERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCI 192
           ERVLKEKFGDA+KDIRQV+DEEV++ TVEAVN HLDILRPAIKNYGGSVEVLSVE  DC+
Sbjct: 141 ERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRPAIKNYGGSVEVLSVEGEDCV 200

Query: 193 VKYVGPDSIASGIRAAIKEKFPDIENVVFT 222
           VKYVGP+SI  GI+AAIKEKF DI NV FT
Sbjct: 201 VKYVGPESIGMGIQAAIKEKFKDISNVTFT 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511421|ref|XP_003625999.1| NifU-like protein [Medicago truncatula] gi|355501014|gb|AES82217.1| NifU-like protein [Medicago truncatula] gi|388517667|gb|AFK46895.1| unknown [Medicago truncatula]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 157/179 (87%), Gaps = 1/179 (0%)

Query: 45  QKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVS 104
           Q S +  T IR+S+ +    SSPGLYSA +F+LTA NVDLVLEDVRPYLI+DGGN+DVVS
Sbjct: 37  QNSRTSTTVIRSSSTANQNQSSPGLYSAQKFELTASNVDLVLEDVRPYLISDGGNVDVVS 96

Query: 105 VEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVY-DEEVRETTVEAV 163
           VE+GVVS+KLQGAC SCPSSTTTM MGIERVLKEKFGD+I+DI QV+ D++ RETTVEAV
Sbjct: 97  VENGVVSLKLQGACESCPSSTTTMKMGIERVLKEKFGDSIEDIVQVFDDDQARETTVEAV 156

Query: 164 NGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFT 222
           N HL+ILRPAIKNYGGSV+VLSVE GDC+V+YVGP+SI SG++AAIKEKFPDI NV F+
Sbjct: 157 NNHLEILRPAIKNYGGSVQVLSVEGGDCVVEYVGPESIGSGVKAAIKEKFPDILNVTFS 215

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436401|ref|XP_004135981.1| PREDICTED: nifU-like protein 1, chloroplastic-like [Cucumis sativus] gi|449515245|ref|XP_004164660.1| PREDICTED: nifU-like protein 1, chloroplastic-like [Cucumis sativus]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 132/172 (76%), Positives = 150/172 (87%), Gaps = 2/172 (1%)

Query: 53  AIRAS--NPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVV 110
           AIRAS  N      SSPGLYSA +F+LT  NVDLVLEDVRPYLIADGGN+DVVSVEDGVV
Sbjct: 48  AIRASPSNSGPSTTSSPGLYSAQKFELTIGNVDLVLEDVRPYLIADGGNVDVVSVEDGVV 107

Query: 111 SVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDIL 170
           S+KL GACGSCPSSTTTM MGIERVLKEKFGD++K+I QVYDEE +ETT EAVN HLDIL
Sbjct: 108 SLKLVGACGSCPSSTTTMKMGIERVLKEKFGDSVKEICQVYDEEPKETTPEAVNSHLDIL 167

Query: 171 RPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFT 222
           RPAI+NYGGSVEV+S+  GDC+VKY GP+SI +G++AAIKE+FPDI NVVF+
Sbjct: 168 RPAIRNYGGSVEVISINGGDCLVKYEGPESIGTGVKAAIKERFPDITNVVFS 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130940|ref|XP_002320962.1| predicted protein [Populus trichocarpa] gi|222861735|gb|EEE99277.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/225 (61%), Positives = 171/225 (76%), Gaps = 11/225 (4%)

Query: 1   MACLSLTAATRI----SKTPTISSKSQFPTKFNERLQFISIKPKNSVLQKSGSHETAIRA 56
           MA L+ TA  +I     K P+I S+   P     + +   +     + QK     TAI+A
Sbjct: 1   MASLASTALPKILPSCPKIPSIISRPCPPQSLTTKQRIPLVGIGRRIFQK-----TAIKA 55

Query: 57  SNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQG 116
           + P+    SSPGL+SA QF+L  +NVDLVLE+VRPYLI+DGGN+DVVSVEDGV+++KLQG
Sbjct: 56  TAPTG--SSSPGLHSAQQFELNPQNVDLVLEEVRPYLISDGGNVDVVSVEDGVITLKLQG 113

Query: 117 ACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKN 176
           ACG+C SS TTM MGIERVLKEKFGDA++DIRQ+  EE +ETTVEA+N HLDILRPAIKN
Sbjct: 114 ACGNCASSETTMKMGIERVLKEKFGDAVQDIRQLSFEEPKETTVEAINDHLDILRPAIKN 173

Query: 177 YGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVF 221
           +GGSVEVLSVE+G C V+Y GP+SI SGI+AAIKEKFPDI +VVF
Sbjct: 174 FGGSVEVLSVENGGCRVEYTGPESIGSGIKAAIKEKFPDIVDVVF 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492810|gb|AFK34471.1| unknown [Lotus japonicus]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 141/155 (90%)

Query: 68  GLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTT 127
           GLYSA +FDLTA NVDLVLEDVRPYLI+DGGN++VVSVE+GV+S+KLQGAC SCPSSTTT
Sbjct: 62  GLYSAAKFDLTAPNVDLVLEDVRPYLISDGGNVEVVSVENGVISLKLQGACESCPSSTTT 121

Query: 128 MSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVE 187
           M +GIERVLKEKFGDA+KDI QVYDEE +ETTVEAVN HL+ILRPAIKN+GGSV+VLSVE
Sbjct: 122 MKLGIERVLKEKFGDAVKDIVQVYDEEPKETTVEAVNNHLEILRPAIKNFGGSVQVLSVE 181

Query: 188 SGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFT 222
             DC V YVGPDSI SGI+AAIKEKFPDI NV FT
Sbjct: 182 GSDCHVDYVGPDSIGSGIKAAIKEKFPDILNVTFT 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501170|gb|AFK38651.1| unknown [Lotus japonicus]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 141/157 (89%)

Query: 66  SPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSST 125
           SPGLYSA + DLTA NVDLVLEDVRPYLI+DGGN++VVSVE+GV+S+KLQ AC SCPSST
Sbjct: 52  SPGLYSAAKIDLTAPNVDLVLEDVRPYLISDGGNVEVVSVENGVISLKLQRACESCPSST 111

Query: 126 TTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLS 185
           TTM +GIERVLKEKFGDA+KDI QVYDEE +ETTVEAVN HL+ILRPAIKN+GGSV+VLS
Sbjct: 112 TTMKLGIERVLKEKFGDAVKDIVQVYDEEPKETTVEAVNNHLEILRPAIKNFGGSVQVLS 171

Query: 186 VESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFT 222
           VE  DC V YVGPDSI SGI+AAIKEKFPDI NV FT
Sbjct: 172 VEGSDCHVDYVGPDSIGSGIKAAIKEKFPDILNVTFT 208

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2141400	231	NFU1 "NFU domain protein 1" [A	0.991	0.956	0.565	7.3e-59
TAIR|locus:2158849	235	NFU2 "NIFU-like protein 2" [Ar	0.636	0.604	0.389	1e-20
TAIR|locus:2120745	236	NFU3 "NFU domain protein 3" [A	0.605	0.572	0.374	3.6e-18
UNIPROTKB|P74558	76	ssl2667 "NifU protein" [Synech	0.331	0.973	0.506	3.3e-15
UNIPROTKB|Q81XP7	78	BAS4821 "NifU domain protein"	0.295	0.846	0.432	3.2e-10
TIGR_CMR|BA_5186	78	BA_5186 "nifU domain protein"	0.295	0.846	0.432	3.2e-10
UNIPROTKB|Q74FX2	74	GSU0480 "Thioredoxin/NifU-like	0.313	0.945	0.458	1.8e-09
TIGR_CMR|GSU_0480	74	GSU_0480 "NifU-like domain pro	0.313	0.945	0.458	1.8e-09
UNIPROTKB|Q3Z623	72	DET1632 "NifU-like protein" [D	0.300	0.930	0.397	2.9e-09
TIGR_CMR|DET_1632	72	DET_1632 "nifU protein, homolo	0.300	0.930	0.397	2.9e-09

TAIR|locus:2141400 NFU1 "NFU domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 130/230 (56%), Positives = 157/230 (68%)

Query:     1 MACL--SLTAATRISKTPTISSKSQFPTKFNERLQFISIKPKNSVLQKSGS-HETAIRXX 57
             MA L  S++ + RI    + S+++ FP   ++   F+    K   + ++   H +AI   
Sbjct:     2 MASLATSISGSFRIL-VKSSSTRNGFPVISDQNPSFVLFANKRRHISRTAIFHRSAISGS 60

Query:    58 XXXX-----XXXXXXXLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXX 112
                             LYSA  FDLT +NVDLVLEDVRP+LI+DGGN+            
Sbjct:    61 SQGEKISPLASGVSSGLYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSL 120

Query:   113 KLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRP 172
             KLQGAC SCPSS+TTM+MGIERVLKEKFGDA+KDIRQV+DEEV++ TVEAVN HLDILRP
Sbjct:   121 KLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRP 180

Query:   173 AIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFT 222
             AIKNYGGSVEVLSVE  DC+VKYVGP+SI  GI+AAIKEKF DI NV FT
Sbjct:   181 AIKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKDISNVTFT 230

GO:0005506 "iron ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=TAS

GO:0009658 "chloroplast organization" evidence=ISS

TAIR|locus:2158849 NFU2 "NIFU-like protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 58/149 (38%), Positives = 84/149 (56%)

Query:    77 LTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVL 136
             LT +NV+ VL+++RPYL++DGGN+            KLQGACGSCPSST TM MGIER L
Sbjct:    85 LTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRL 144

Query:   137 KEKFGDAIKDIRQVYDEEVR-ETTVEAVNGHLDILRP-AIKNYGGSVEVLSVESGDCIVK 194
              EK  + +  +  + DEE   E   E +   L+ +RP  I    GS++++ +E     ++
Sbjct:   145 MEKIPEIVA-VEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIR 203

Query:   195 YVGPDSIASGIRAAI----KEKFPDIENV 219
               GP +    +R A+    +EK P I  V
Sbjct:   204 ITGPAAGVMTVRVAVTQKLREKIPSIAAV 232

GO:0005506 "iron ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;IMP

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=TAS

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2120745 NFU3 "NFU domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 52/139 (37%), Positives = 77/139 (55%)

Query:    77 LTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVL 136
             LT +NV+ VL++VRP L+ADGGN+            KLQGACGSCPSS+ T+ MGIE  L
Sbjct:    84 LTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 143

Query:   137 KEKFGDAIKDIRQVYDEEVR--ETTVEAVNGHLDILRPAIKNYGGS-VEVLSVESGDCIV 193
             ++K  + I  + Q  + E    E   E +   L  LRP +   GG  +E++ ++     V
Sbjct:   144 RDKIPE-IMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKV 202

Query:   194 KYVGPDSIASGIRAAIKEK 212
             +  GP +    +R A+ +K
Sbjct:   203 RLTGPAAGVMTVRVALTQK 221

GO:0005506 "iron ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=TAS

GO:0009658 "chloroplast organization" evidence=ISS

GO:0009570 "chloroplast stroma" evidence=IDA

UNIPROTKB|P74558 ssl2667 "NifU protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query:    76 DLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERV 135
             +LT  NV+ VL+++RPYL+ADGGN+            +LQGACGSCPSST T+ MGIER 
Sbjct:     2 ELTLNNVETVLDELRPYLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMGIERK 61

Query:   136 LKEKFGDAIKDIRQV 150
             L+E   + I ++ QV
Sbjct:    62 LREMIPE-IAEVEQV 75

GO:0016226 "iron-sulfur cluster assembly" evidence=IDA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA

UNIPROTKB|Q81XP7 BAS4821 "NifU domain protein" [Bacillus anthracis (taxid:1392)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query:    85 VLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLKEKFGDAI 144
             VL+ +RP+L+ DGG++            +L GACGSCPSST T+  GIER L E+    I
Sbjct:    13 VLDKLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGIERALLEEVPGVI 72

Query:   145 KDIRQVY 151
              ++ QV+
Sbjct:    73 -EVEQVF 78

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_5186 BA_5186 "nifU domain protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query:    85 VLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLKEKFGDAI 144
             VL+ +RP+L+ DGG++            +L GACGSCPSST T+  GIER L E+    I
Sbjct:    13 VLDKLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGIERALLEEVPGVI 72

Query:   145 KDIRQVY 151
              ++ QV+
Sbjct:    73 -EVEQVF 78

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74FX2 GSU0480 "Thioredoxin/NifU-like domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 33/72 (45%), Positives = 42/72 (58%)

Query:    80 KNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXX-KLQGACGSCPSSTTTMSMGIERVLKE 138
             ++V  VL+ VRP L ADGG++             KL GACG CP ST T+ MGIER LKE
Sbjct:     3 EDVKKVLDLVRPALQADGGDVELVEVTEDGVVKVKLVGACGHCPMSTMTLKMGIERTLKE 62

Query:   139 KFGDAIKDIRQV 150
             K    +K++  V
Sbjct:    63 KV-PGVKEVVSV 73

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0480 GSU_0480 "NifU-like domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 33/72 (45%), Positives = 42/72 (58%)

Query:    80 KNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXX-KLQGACGSCPSSTTTMSMGIERVLKE 138
             ++V  VL+ VRP L ADGG++             KL GACG CP ST T+ MGIER LKE
Sbjct:     3 EDVKKVLDLVRPALQADGGDVELVEVTEDGVVKVKLVGACGHCPMSTMTLKMGIERTLKE 62

Query:   139 KFGDAIKDIRQV 150
             K    +K++  V
Sbjct:    63 KV-PGVKEVVSV 73

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z623 DET1632 "NifU-like protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query:    80 KNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLKEK 139
             + V+ VL+ +RP L ADGGN+            KL GAC  CP ST T+  GIE++LK +
Sbjct:     3 EKVEAVLDKIRPALEADGGNVELVEVVDGVVKVKLVGACAGCPMSTMTLKNGIEKILKRE 62

Query:   140 FGDAIKDI 147
               + +K++
Sbjct:    63 IPE-VKEV 69

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1632 DET_1632 "nifU protein, homolog" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query:    80 KNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLKEK 139
             + V+ VL+ +RP L ADGGN+            KL GAC  CP ST T+  GIE++LK +
Sbjct:     3 EKVEAVLDKIRPALEADGGNVELVEVVDGVVKVKLVGACAGCPMSTMTLKNGIEKILKRE 62

Query:   140 FGDAIKDI 147
               + +K++
Sbjct:    63 IPE-VKEV 69

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93W77	NIFU1_ARATH	No assigned EC number	0.6619	0.9147	0.8831	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028149001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (213 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017304001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (463 aa)	•						•		0.431

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
pfam01106	68	pfam01106, NifU, NifU-like domain	3e-23
COG0694	93	COG0694, COG0694, Thioredoxin-like proteins and do	2e-20
TIGR02000	290	TIGR02000, NifU_proper, Fe-S cluster assembly prot	2e-13
PRK11190	192	PRK11190, PRK11190, Fe/S biogenesis protein NfuA;	5e-04
TIGR03341	190	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	7e-04

>gnl|CDD|144628 pfam01106, NifU, NifU-like domain

 Score = 88.4 bits (220), Expect = 3e-23
 Identities = 30/64 (46%), Positives = 49/64 (76%)

Query: 82  VDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFG 141
           ++ V++++RP L  DGG+I++V V+  +V V+LQGACG C SST T+  GIER L+E+ G
Sbjct: 1   IEEVIDEIRPMLQRDGGDIELVDVDGDIVKVRLQGACGGCMSSTMTLKGGIERKLRERLG 60

Query: 142 DAIK 145
           ++++
Sbjct: 61  ESLR 64

This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown. Length = 68

>gnl|CDD|223766 COG0694, COG0694, Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

 Score = 82.0 bits (203), Expect = 2e-20
 Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 3/73 (4%)

Query: 82  VDLVLEDVRPYLIADGGNIDVVSVE--DGVVSVKLQGACGSCPSSTTTMSMGIERVLKEK 139
            +++ E +RP L  DGG++++V ++  DGVV ++L GAC  CPSST T+  GIER LKE+
Sbjct: 15  EEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEE 74

Query: 140 FGDAIKDIRQVYD 152
               +K++ QV +
Sbjct: 75  I-PEVKEVEQVTE 86

Length = 93

>gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 38  KPKNSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADG 97
           K   +     GS  T    S    P  +   +            +  VLE+VRP L ADG
Sbjct: 190 KGATNPANAGGSKPTNKPNSGQKRPLTNVQRIQL----------IQKVLEEVRPVLQADG 239

Query: 98  GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIK 145
           G++++  V+  +V V L GAC  C  ST T+  GI++ L+E+ G+ + 
Sbjct: 240 GDVELYDVDGKIVYVVLTGACSGCSMSTMTL-KGIQQRLRERLGEFVV 286

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 290

>gnl|CDD|183027 PRK11190, PRK11190, Fe/S biogenesis protein NfuA; Provisional

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 82  VDLVLE-DVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEK 139
           V+ VL+  + P L   GG + ++ + EDG   ++  G C  C     T+  GIE+ L  +
Sbjct: 111 VEYVLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNE 170

Query: 140 FGDAIKDIRQVYDEE 154
           F   +K +R + + +
Sbjct: 171 FPGELKGVRDLTEHQ 185

Length = 192

>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 16/119 (13%)

Query: 43  VLQKSGSHETAIRASNPSAP--AGSSPGLYSAHQFDLTAKNVDLVLE-DVRPYLIADGGN 99
           V  + G   T ++A N   P  A  +P         L  + ++ VL+ ++ P L + GG 
Sbjct: 80  VTDRMGGQLT-LKAPNAKMPKVADDAP---------LEER-INYVLQSEINPQLASHGGK 128

Query: 100 IDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRE 157
           + +V + +DGV  ++  G C  C     T+  G+E+ L E+F + +K +R   D    E
Sbjct: 129 VTLVEITDDGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPE-LKGVRDATDHTRGE 186

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	99.88
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	99.88
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.84
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.84
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.83
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.82
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	99.75
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	99.74
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	99.74
KOG2358	213	consensus NifU-like domain-containing proteins [Po	99.62
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	99.61
KOG2358	213	consensus NifU-like domain-containing proteins [Po	99.54
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	92.87
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	89.05
COG0316	110	sufA Fe-S cluster assembly scaffold protein [Postt	88.52

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.88  E-value=6e-23  Score=149.68  Aligned_cols=67  Identities=49%  Similarity=0.944  Sum_probs=61.0

Q ss_pred             HHHHHHhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccc
Q 027469           82 VDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQ  149 (223)
Q Consensus        82 v~~~l~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~  149 (223)
                      |+.+|++|||+|++||||++++++++++|+|||+|+|+|||++.+||+++||++|++++|+ ++.|..
T Consensus         1 V~~~l~~IrP~L~~dGGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~-v~~V~~   67 (68)
T PF01106_consen    1 VEEVLEEIRPYLQSDGGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPE-VKRVVP   67 (68)
T ss_dssp             HHHHHHHCHHHHHHTTEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT--SEEEE
T ss_pred             CHHHHHHhChHHHhcCCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-CceEEE
Confidence            5788877999999999999999999999999999999999999999999999999999994 554543

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.1e-22  Score=157.15  Aligned_cols=75  Identities=47%  Similarity=0.845  Sum_probs=68.6

Q ss_pred             hHHHHHHHH-HhhhhHHHhcCCceEEEeee--CCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccc
Q 027469           78 TAKNVDLVL-EDVRPYLIADGGNIDVVSVE--DGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDE  153 (223)
Q Consensus        78 ~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~--~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~  153 (223)
                      ..++++.+| ++|||+|+.|||||++++|+  +|+|+|||.|||+|||||+.|||++||++|++.+| +++.|+++.++
T Consensus        10 ~~e~v~~~l~~~irP~l~~dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~-ev~~V~~v~~~   87 (93)
T COG0694          10 LLERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIP-EVKEVEQVTEH   87 (93)
T ss_pred             HHHHHHHHHHhccCcceeccCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCC-ccceEEEccCc
Confidence            457788888 59999999999999999998  78999999999999999999999999999999999 57778887654

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.84  E-value=3.7e-21  Score=165.27  Aligned_cols=77  Identities=26%  Similarity=0.610  Sum_probs=71.2

Q ss_pred             hHHHHHHHH-HhhhhHHHhcCCceEEEeee-CCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccch
Q 027469           78 TAKNVDLVL-EDVRPYLIADGGNIDVVSVE-DGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEE  154 (223)
Q Consensus        78 ~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~-~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~  154 (223)
                      ..++|+.+| ++|||+|++|||||||++|+ +++|+|||+|||+|||+|++||+.+||++|++++|++++.|+++++++
T Consensus       107 ~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~v~~~~  185 (192)
T PRK11190        107 LMERVEYVLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRDLTEHQ  185 (192)
T ss_pred             HHHHHHHHHHhccChhHHhcCCcEEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEEEecccc
Confidence            457799999 59999999999999999997 579999999999999999999999999999999997799899987765

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.84  E-value=1.2e-20  Score=161.77  Aligned_cols=76  Identities=29%  Similarity=0.675  Sum_probs=70.2

Q ss_pred             hHHHHHHHHH-hhhhHHHhcCCceEEEeee-CCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccch
Q 027469           78 TAKNVDLVLE-DVRPYLIADGGNIDVVSVE-DGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEE  154 (223)
Q Consensus        78 ~~~~v~~~l~-~IrP~Lq~dGGdVelvdv~-~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~  154 (223)
                      ..++|+.+|+ +|||+|++|||||||++|+ +++|+|||+|+|+|||++++||+++||++|++++| +++.|+.+++++
T Consensus       106 ~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p-~v~~V~~~~~~~  183 (190)
T TIGR03341       106 LEERINYVLQSEINPQLASHGGKVTLVEITDDGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFP-ELKGVRDATDHT  183 (190)
T ss_pred             HHHHHHHHHHhccCHHHHhcCCceEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCC-CcceEEEecCcc
Confidence            5688999995 9999999999999999997 57999999999999999999999999999999999 588898888775

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.83  E-value=2.5e-21  Score=165.98  Aligned_cols=145  Identities=17%  Similarity=0.307  Sum_probs=116.4

Q ss_pred             eeeeEEEEecCCCCCCCCC---CCCCcCCcchhhhhHHHHHHHH-HhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCC
Q 027469           46 KSGSHETAIRASNPSAPAG---SSPGLYSAHQFDLTAKNVDLVL-EDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSC  121 (223)
Q Consensus        46 ~~~~r~~~~~~gtp~a~~~---~~p~~~~~~~~~l~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gC  121 (223)
                      +.++|+++...|.+...++   |.+....+.|..+....+..++ ....|||..-     .+|+.++-    +       
T Consensus        21 ~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~-----~IDyve~~----~-------   84 (190)
T TIGR03341        21 GTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDA-----VIDFVTDR----M-------   84 (190)
T ss_pred             CceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCC-----EEEEeecC----C-------
Confidence            4579999999999887777   4456666677777778888888 7999999988     88886443    2       


Q ss_pred             CCchHHHHHHHHHHHHHHhCcccccccccccchhhhhhHHHhhcccc-cchhHHHhcCCcEEEEEEe-CCEEEEEEeCh-
Q 027469          122 PSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLD-ILRPAIKNYGGSVEVLSVE-SGDCIVKYVGP-  198 (223)
Q Consensus       122 pss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~e~l~e~I~~~L~-~IRP~L~~~GGdvelv~v~-~g~v~vrl~G~-  198 (223)
                       ++..++++          | +++. ...   +.++++.++|+++|+ +|||+|++||||++|++|+ +++|+|||+|+ 
T Consensus        85 -g~gF~f~N----------P-na~~-~~~---~~~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC  148 (190)
T TIGR03341        85 -GGQLTLKA----------P-NAKM-PKV---ADDAPLEERINYVLQSEINPQLASHGGKVTLVEITDDGVAVLQFGGGC  148 (190)
T ss_pred             -CceeEEeC----------C-ccCC-CcC---ccchHHHHHHHHHHHhccCHHHHhcCCceEEEEEcCCCEEEEEEeecC
Confidence             34455554          5 4442 111   123468999999996 9999999999999999995 68999999999 


Q ss_pred             -------hhHHHHHHHHHHhhCCCcceEEeC
Q 027469          199 -------DSIASGIRAAIKEKFPDIENVVFT  222 (223)
Q Consensus       199 -------~Tlk~gIE~~L~e~~Pei~~V~~v  222 (223)
                             .|||++||++|++++|+|++|+.+
T Consensus       149 ~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~  179 (190)
T TIGR03341       149 NGCSMVDVTLKDGVEKTLLERFPELKGVRDA  179 (190)
T ss_pred             CCCcchHHHHHHHHHHHHHHhCCCcceEEEe
Confidence                   899999999999999999999875

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.82  E-value=7.3e-21  Score=163.50  Aligned_cols=145  Identities=21%  Similarity=0.328  Sum_probs=113.4

Q ss_pred             eeeeEEEEecCCCCCCCCC---CCCCcCCcchhhhhHHHHHHHH-HhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCC
Q 027469           46 KSGSHETAIRASNPSAPAG---SSPGLYSAHQFDLTAKNVDLVL-EDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSC  121 (223)
Q Consensus        46 ~~~~r~~~~~~gtp~a~~~---~~p~~~~~~~~~l~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gC  121 (223)
                      +.++|+++...|.....++   |.....++.|..+....+..++ ....|||...     .+|+.++-    +       
T Consensus        22 ~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~-----~IDyve~~----~-------   85 (192)
T PRK11190         22 GTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDA-----EIDFVTDQ----L-------   85 (192)
T ss_pred             CceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCC-----EEEEeecC----C-------
Confidence            4579999999998877666   3244445566666667788888 7999999988     88886543    2       


Q ss_pred             CCchHHHHHHHHHHHHHHhCcccccccccccchhhhhhHHHhhcccc-cchhHHHhcCCcEEEEEEe-CCEEEEEEeCh-
Q 027469          122 PSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLD-ILRPAIKNYGGSVEVLSVE-SGDCIVKYVGP-  198 (223)
Q Consensus       122 pss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~e~l~e~I~~~L~-~IRP~L~~~GGdvelv~v~-~g~v~vrl~G~-  198 (223)
                       ++..++++          | +++. +...   .+..+.++|+++|+ +|||+|++||||++|++|+ +++|+|||+|+ 
T Consensus        86 -g~gF~f~N----------P-Na~~-~~~~---~~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC  149 (192)
T PRK11190         86 -GSQLTLKA----------P-NAKM-RKVA---DDAPLMERVEYVLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGC  149 (192)
T ss_pred             -CCceEEEC----------C-CCCC-CCCc---ccHHHHHHHHHHHHhccChhHHhcCCcEEEEEEcCCCEEEEEEeecC
Confidence             34445544          5 4543 1111   23368899999995 9999999999999999995 68999999999 


Q ss_pred             -------hhHHHHHHHHHHhhCC-CcceEEeC
Q 027469          199 -------DSIASGIRAAIKEKFP-DIENVVFT  222 (223)
Q Consensus       199 -------~Tlk~gIE~~L~e~~P-ei~~V~~v  222 (223)
                             .|||++||++|++++| +|++|+.+
T Consensus       150 ~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~v  181 (192)
T PRK11190        150 NGCSMVDVTLKEGIEKQLLNEFPGELKGVRDL  181 (192)
T ss_pred             CCCcchHHHHHHHHHHHHHHhCCHhhceEEEe
Confidence                   8999999999999999 99999876

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=99.75  E-value=2.5e-18  Score=155.78  Aligned_cols=69  Identities=38%  Similarity=0.686  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccc
Q 027469           79 AKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQ  149 (223)
Q Consensus        79 ~~~v~~~l~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~  149 (223)
                      .++|+.+|++|||+|++|||||+|++|++++|+|||+|+|+|||++.+||+. ||++|++++|+ +..|..
T Consensus       221 ~~~v~~~l~~irP~l~~dGGdv~lv~v~~~~v~v~l~GaC~gC~~s~~Tl~~-Ie~~l~~~~p~-~~~V~~  289 (290)
T TIGR02000       221 IQLIQKVLEEVRPVLQADGGDVELYDVDGKIVYVVLTGACSGCSMSTMTLKG-IQQRLRERLGE-FVVVEA  289 (290)
T ss_pred             HHHHHHHHHHhCchHhhcCCcEEEEEEeCCEEEEEEeeCCCCCcchHHHHHH-HHHHHHHhCCC-ceEEEe
Confidence            4778999999999999999999999999999999999999999999999998 99999999995 544543

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2.7e-18  Score=132.70  Aligned_cols=67  Identities=27%  Similarity=0.518  Sum_probs=62.8

Q ss_pred             hhhhHHHhhcccc-cchhHHHhcCCcEEEEEEe--CCEEEEEEeCh--------hhHHHHHHHHHHhhCCCcceEEeC
Q 027469          156 RETTVEAVNGHLD-ILRPAIKNYGGSVEVLSVE--SGDCIVKYVGP--------DSIASGIRAAIKEKFPDIENVVFT  222 (223)
Q Consensus       156 ~e~l~e~I~~~L~-~IRP~L~~~GGdvelv~v~--~g~v~vrl~G~--------~Tlk~gIE~~L~e~~Pei~~V~~v  222 (223)
                      +.++.++|+++|+ +|||+|++|||||+|++|+  +|+|+|||+||        .|||+|||++|++.||++++|+.+
T Consensus         7 ~~~~~e~v~~~l~~~irP~l~~dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~v   84 (93)
T COG0694           7 DAELLERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQV   84 (93)
T ss_pred             cHHHHHHHHHHHHhccCcceeccCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEEc
Confidence            4478899999995 9999999999999999997  88999999999        899999999999999999999875

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.74  E-value=5.2e-18  Score=123.69  Aligned_cols=60  Identities=32%  Similarity=0.607  Sum_probs=55.9

Q ss_pred             hhcccccchhHHHhcCCcEEEEEEeCCEEEEEEeCh--------hhHHHHHHHHHHhhCCCcceEEeC
Q 027469          163 VNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGP--------DSIASGIRAAIKEKFPDIENVVFT  222 (223)
Q Consensus       163 I~~~L~~IRP~L~~~GGdvelv~v~~g~v~vrl~G~--------~Tlk~gIE~~L~e~~Pei~~V~~v  222 (223)
                      |+++|++|||+|++||||++|+++++++|+|||+|+        .||+++||++|++++|++++|+.|
T Consensus         1 V~~~l~~IrP~L~~dGGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~~v   68 (68)
T PF01106_consen    1 VEEVLEEIRPYLQSDGGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVVPV   68 (68)
T ss_dssp             HHHHHHHCHHHHHHTTEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEEEC
T ss_pred             CHHHHHHhChHHHhcCCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEEEC
Confidence            567888899999999999999999999999999999        899999999999999999999875

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=4.2e-17  Score=141.20  Aligned_cols=145  Identities=28%  Similarity=0.303  Sum_probs=109.0

Q ss_pred             ccceeeeecccccCCCCCCccccCccceeeeccCccceeeeeeE---EEEec----CCCCCCCCCCCCCc----CCcchh
Q 027469            7 TAATRISKTPTISSKSQFPTKFNERLQFISIKPKNSVLQKSGSH---ETAIR----ASNPSAPAGSSPGL----YSAHQF   75 (223)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~----~gtp~a~~~~~p~~----~~~~~~   75 (223)
                      ++.||.+.++ +.++++++.+....+.|+....++..+.-+-++   .....    -|-|-+.. .....    ..+++.
T Consensus        45 s~~~s~La~s-~~~~~~gvv~~~~g~dfvtv~k~~ee~~w~~L~p~i~~~~sd~g~~g~pli~g-~~~~~~~~~~~e~d~  122 (213)
T KOG2358|consen   45 SAFFSPLAKS-ILFRDGGVVKVFFGPDFVTVTKLTEENVWSVLDPEIPSLMSDGGNVGLPLIDG-NIVVLKLQGACESDP  122 (213)
T ss_pred             chhhcHHHHH-HHhhcCCcEEEEecCCeEEEeccchhhhHhhhchhhHHHHhccccccchhhcc-chhhhhhcccccCCh
Confidence            4556777776 778888999999999999998888844433321   11111    11111111 11111    235667


Q ss_pred             hhhHHHHHHHHHhhhhHHHhcCCceEEEeeeC--CEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccc
Q 027469           76 DLTAKNVDLVLEDVRPYLIADGGNIDVVSVED--GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDE  153 (223)
Q Consensus        76 ~l~~~~v~~~l~~IrP~Lq~dGGdVelvdv~~--g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~  153 (223)
                      +......+.+..+|||.+++||||++++++|+  |.|++||+|+|.+||++..||+.+||++|+.++| ++|+++++.|+
T Consensus       123 e~t~~ikelietRiRp~i~edggdi~y~g~e~g~g~v~lklqgact~cpss~vtlk~Gie~mL~~y~~-eVK~v~qv~d~  201 (213)
T KOG2358|consen  123 ESTMTIKELIETRIRPKIQEDGGDEDYVGFETGLGLVSLKLQGACTECPSSLVTLKNGIENMLEIYVP-EVKGVIQVPDA  201 (213)
T ss_pred             hHHHHHHHHHHHhhhhhhhccCCceeeccccCccchHHHHHhhhhccCCcccchhhhhHHHHHHhhcc-eeeEEEeccCc
Confidence            77766666666999999999999999999998  5899999999999999999999999999999999 79999999776


Q ss_pred             h
Q 027469          154 E  154 (223)
Q Consensus       154 ~  154 (223)
                      +
T Consensus       202 e  202 (213)
T KOG2358|consen  202 E  202 (213)
T ss_pred             c
Confidence            5

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=99.61  E-value=1.8e-15  Score=137.18  Aligned_cols=64  Identities=20%  Similarity=0.381  Sum_probs=60.4

Q ss_pred             hhHHHhhcccccchhHHHhcCCcEEEEEEeCCEEEEEEeCh--------hhHHHHHHHHHHhhCCCcceEEeC
Q 027469          158 TTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGP--------DSIASGIRAAIKEKFPDIENVVFT  222 (223)
Q Consensus       158 ~l~e~I~~~L~~IRP~L~~~GGdvelv~v~~g~v~vrl~G~--------~Tlk~gIE~~L~e~~Pei~~V~~v  222 (223)
                      ...++|+++|++|||+|++|||||+|++|++++|+|||+|+        +||++ ||++|++++|++..|+.|
T Consensus       219 ~~~~~v~~~l~~irP~l~~dGGdv~lv~v~~~~v~v~l~GaC~gC~~s~~Tl~~-Ie~~l~~~~p~~~~V~~v  290 (290)
T TIGR02000       219 QRIQLIQKVLEEVRPVLQADGGDVELYDVDGKIVYVVLTGACSGCSMSTMTLKG-IQQRLRERLGEFVVVEAV  290 (290)
T ss_pred             HHHHHHHHHHHHhCchHhhcCCcEEEEEEeCCEEEEEEeeCCCCCcchHHHHHH-HHHHHHHhCCCceEEEeC
Confidence            45689999999999999999999999999999999999999        89998 999999999999999875

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.6e-15  Score=131.42  Aligned_cols=112  Identities=35%  Similarity=0.558  Sum_probs=101.1

Q ss_pred             hhHHHHHHHHHhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccchhh
Q 027469           77 LTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVR  156 (223)
Q Consensus        77 l~~~~v~~~l~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~  156 (223)
                      +..+....+|...+|++-+|||.+-+--+++..+.+++.|+|..||.+.+|+|++||                       
T Consensus        77 ~~ee~~w~~L~p~i~~~~sd~g~~g~pli~g~~~~~~~~~~~e~d~e~t~~ikelie-----------------------  133 (213)
T KOG2358|consen   77 LTEENVWSVLDPEIPSLMSDGGNVGLPLIDGNIVVLKLQGACESDPESTMTIKELIE-----------------------  133 (213)
T ss_pred             cchhhhHhhhchhhHHHHhccccccchhhccchhhhhhcccccCChhHHHHHHHHHH-----------------------
Confidence            445567888999999999999999999999999999999999999999999886331                       


Q ss_pred             hhhHHHhhcccccchhHHHhcCCcEEEEEEeC--CEEEEEEeCh--------hhHHHHHHHHHHhhCCCcceEEeC
Q 027469          157 ETTVEAVNGHLDILRPAIKNYGGSVEVLSVES--GDCIVKYVGP--------DSIASGIRAAIKEKFPDIENVVFT  222 (223)
Q Consensus       157 e~l~e~I~~~L~~IRP~L~~~GGdvelv~v~~--g~v~vrl~G~--------~Tlk~gIE~~L~e~~Pei~~V~~v  222 (223)
                                 .+|||.++.||||++++++|+  |+|+++++|+        .|||+|||..|+.++|++|.|+++
T Consensus       134 -----------tRiRp~i~edggdi~y~g~e~g~g~v~lklqgact~cpss~vtlk~Gie~mL~~y~~eVK~v~qv  198 (213)
T KOG2358|consen  134 -----------TRIRPKIQEDGGDEDYVGFETGLGLVSLKLQGACTECPSSLVTLKNGIENMLEIYVPEVKGVIQV  198 (213)
T ss_pred             -----------HhhhhhhhccCCceeeccccCccchHHHHHhhhhccCCcccchhhhhHHHHHHhhcceeeEEEec
Confidence                       468899999999999999987  5999999999        799999999999999999999875

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=92.87  E-value=0.45  Score=33.92  Aligned_cols=64  Identities=30%  Similarity=0.400  Sum_probs=46.6

Q ss_pred             HHHHHHH-HhhhhHHHhc---CCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCccccc
Q 027469           80 KNVDLVL-EDVRPYLIAD---GGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKD  146 (223)
Q Consensus        80 ~~v~~~l-~~IrP~Lq~d---GGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~  146 (223)
                      +.|..+| .-.-|++..+   =|-|+=+.+++|.|+|.+.-...+|+ ....|++.|+++|+ .+| ++++
T Consensus         2 ~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~~~V~v~l~l~~~~~~-~~~~l~~~i~~~l~-~l~-gv~~   69 (72)
T PF01883_consen    2 QAVRDALKQVKDPELGKDIVELGMVRDISIEGGKVSVSLELPTPACP-AAEPLREEIREALK-ALP-GVKS   69 (72)
T ss_dssp             HHHHHHHTT-BETTTSSBTTTTTSEEEEEECTCEEEEEE--SSTTHT-THHHHHHHHHHHHH-TST-T-SE
T ss_pred             HHHHHHHhCCCCCCCCCCHHHcCCeeEEEEECCEEEEEEEECCCCch-HHHHHHHHHHHHHH-hCC-CCce
Confidence            4566777 5556766543   36788899999999999999999999 77788899999999 576 3543

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=89.05  E-value=1.6  Score=30.96  Aligned_cols=59  Identities=29%  Similarity=0.455  Sum_probs=40.0

Q ss_pred             Hhhccc-ccchhHHHhc---CCcEEEEEEeCCEEEEEEeCh-------hhHHHHHHHHHHhhCCCcceEEe
Q 027469          162 AVNGHL-DILRPAIKNY---GGSVEVLSVESGDCIVKYVGP-------DSIASGIRAAIKEKFPDIENVVF  221 (223)
Q Consensus       162 ~I~~~L-~~IRP~L~~~---GGdvelv~v~~g~v~vrl~G~-------~Tlk~gIE~~L~e~~Pei~~V~~  221 (223)
                      +|.++| .-.-|.+..+   =|-|.=+.+++|.|.+.+.=+       ..++.-|+++|+ .+|+++.|..
T Consensus         3 ~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~-~l~gv~~V~V   72 (72)
T PF01883_consen    3 AVRDALKQVKDPELGKDIVELGMVRDISIEGGKVSVSLELPTPACPAAEPLREEIREALK-ALPGVKSVKV   72 (72)
T ss_dssp             HHHHHHTT-BETTTSSBTTTTTSEEEEEECTCEEEEEE--SSTTHTTHHHHHHHHHHHHH-TSTT-SEEEE
T ss_pred             HHHHHHhCCCCCCCCCCHHHcCCeeEEEEECCEEEEEEEECCCCchHHHHHHHHHHHHHH-hCCCCceEeC
Confidence            344455 2444555444   477888889999988888766       568889999999 7999998863

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.52  E-value=0.1  Score=41.69  Aligned_cols=57  Identities=12%  Similarity=0.148  Sum_probs=46.5

Q ss_pred             eeeeeEEEEecCCCCCCCCC---CCCCcCCcchhhhhHHHHHHHH-HhhhhHHHhcCCceEEEeeeCC
Q 027469           45 QKSGSHETAIRASNPSAPAG---SSPGLYSAHQFDLTAKNVDLVL-EDVRPYLIADGGNIDVVSVEDG  108 (223)
Q Consensus        45 ~~~~~r~~~~~~gtp~a~~~---~~p~~~~~~~~~l~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~~g  108 (223)
                      .++++|++|.++|.+..+++   |+  ..+++|..+..+.+..++ ...-|||...     .+|+.++
T Consensus        25 ~~~~lRv~V~~gGCsG~~Y~~~~~~--~~~~~D~v~e~~g~~v~vD~~S~~~L~G~-----~IDyv~~   85 (110)
T COG0316          25 ENLGLRVGVKGGGCSGFQYGLEFDD--EINEDDTVFEQDGVKVVVDPKSLPYLEGT-----EIDYVED   85 (110)
T ss_pred             CCceEEEEEeCCCCCCcEeEEEEcC--CCCCCCEEEEeCCEEEEEChhhhhhhcCC-----EEEEEEc
Confidence            36789999999999999998   44  556778888888899998 7999999766     6777433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
2z51_A	154	Crystal Structure Of Arabidopsis Cnfu Involved In I		4e-20
2jnv_A	91	Solution Structure Of C-Terminal Domain Of Nifu-Lik		4e-14
1xhj_A	88	Solution Structure Of The Staphylococcus Epidermidi		1e-09
1veh_A	92	Solution Structure Of Rsgi Ruh-018, A Nifu-Like Dom		4e-04

>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron- Sulfur Cluster Biosynthesis Length = 154

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 77  LTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVL 136
           LT +NV+ VL+++RPYL++DGGN+            KLQGACGSCPSST TM MGIER L
Sbjct: 4   LTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRL 63
Query: 137 KEKFGDAIKDIRQVYDEEV-RETTVEAVNGHLDILRP-AIKNYGGSVEVLSVESGDCIVK 194
            EK  + +  +  + DEE   E   E +   L+ +RP  I    GS++++ +E     ++
Sbjct: 64  MEKIPEIVA-VEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIR 122
Query: 195 YVGPDSIASGIRAAI----KEKFPDIENV 219
             GP +    +R A+    +EK P I  V
Sbjct: 123 ITGPAAGVMTVRVAVTQKLREKIPSIAAV 151

>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like Protein From Oryza Sativa Length = 91

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 75  FDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIER 134
             LTA NV+ VL+ VRPYL ADGG++            KLQGACGSCPSS  T+  GIER
Sbjct: 3   LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 62
Query: 135 VLKEKFGDAIKDIRQVYDEE 154
            L EK  D +  +  V D+E
Sbjct: 63  RLMEKIPD-VAAVEPVTDKE 81

>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis Protein Se0630. Northest Structural Genomics Consortium Target Ser8 Length = 88

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 75  FDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIER 134
           FD  A+    V+E +RP+L+ DGG+             +L GACG+CPSST T+  GIER
Sbjct: 9   FDQVAE----VIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIER 64
Query: 135 VLKEKFGDAIKDIRQVYDE 153
            L E+    I ++ QV+ E
Sbjct: 65  ALHEEVPGVI-EVEQVFLE 82

>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of Hirip5 Protein From Mouse Cdna Length = 92

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 89  VRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLK 137
           +RP +  DGG++            KLQG+C SCPSS  T+  GI+ +L+
Sbjct: 26  IRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQ 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	2e-47
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	3e-16
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	9e-06
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	2e-31
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	4e-05
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	1e-25
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	5e-24
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	4e-06

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score =  152 bits (386), Expect = 2e-47
 Identities = 59/151 (39%), Positives = 88/151 (58%), Gaps = 7/151 (4%)

Query: 76  DLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERV 135
            LT +NV+ VL+++RPYL++DGGN+ +  ++  VV VKLQGACGSCPSST TM MGIER 
Sbjct: 3   PLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERR 62

Query: 136 LKEKFGDAIKDIRQVYDEEVRE-TTVEAVNGHLDILRP-AIKNYGGSVEVLSVESGDCIV 193
           L EK  + I  +  + DEE       E +   L+ +RP  I    GS++++ +E     +
Sbjct: 63  LMEKIPE-IVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKI 121

Query: 194 KYVGPDS----IASGIRAAIKEKFPDIENVV 220
           +  GP +    +   +   ++EK P I  V 
Sbjct: 122 RITGPAAGVMTVRVAVTQKLREKIPSIAAVQ 152

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 6/82 (7%)

Query: 70  YSAHQFDLTAKNVDLVLEDVRPYLIAD-GGNIDVVSVEDGVVSVKLQGACGSCPSSTTTM 128
                 +L  +N++ VLE++RPYLI    G++D+V +ED +V +++ G      +   T+
Sbjct: 78  DEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPA----AGVMTV 133

Query: 129 SMGIERVLKEKFGDAIKDIRQV 150
            + + + L+EK    I  ++ +
Sbjct: 134 RVAVTQKLREKIPS-IAAVQLI 154

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 155 VRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVG-----PDSIA---SGIR 206
           +   T E V   LD +RP + + GG+V +  ++     VK  G     P S      GI 
Sbjct: 1   MVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIE 60

Query: 207 AAIKEKFPDIENVV 220
             + EK P+I  V 
Sbjct: 61  RRLMEKIPEIVAVE 74

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1 Length = 88

 Score =  109 bits (274), Expect = 2e-31
 Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 76  DLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERV 135
                 V  V+E +RP+L+ DGG+  +V VEDG+V ++L GACG+CPSST T+  GIER 
Sbjct: 6   PTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERA 65

Query: 136 LKEKFGDAIKDIRQVYDEE 154
           L E+    + ++ QV+ E 
Sbjct: 66  LHEEV-PGVIEVEQVFLEH 83

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1 Length = 88

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 157 ETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVG-----PDSIA---SGIRAA 208
            T  + V   ++ LRP +   GG   ++ VE G   ++  G     P S     +GI  A
Sbjct: 6   PTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERA 65

Query: 209 IKEKFPDIENVV 220
           + E+ P +  V 
Sbjct: 66  LHEEVPGVIEVE 77

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1 Length = 92

 Score = 94.7 bits (236), Expect = 1e-25
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 64  GSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPS 123
           GSS    S    ++ A   +L+   +RP +  DGG++     EDG+V +KLQG+C SCPS
Sbjct: 1   GSSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPS 60

Query: 124 STTTMSMGIERVLKEKFGDAIKDIRQVYDEE 154
           S  T+  GI+ +L+    + ++ + QV    
Sbjct: 61  SIITLKSGIQNMLQFYIPE-VEGVEQVSGPS 90

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Length = 74

 Score = 90.0 bits (224), Expect = 5e-24
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 76  DLTAKNVDLVLEDVRPYLIAD-GGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIER 134
           +L  +NV+ VL ++RPYL    GG +  + ++  +V V+L G      +   T+ + + +
Sbjct: 3   ELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPA----AVVRTVRIAVSK 58

Query: 135 VLKEKFGDAIKDIRQV 150
            L+EK    I+ ++ +
Sbjct: 59  KLREKIPS-IQIVQLL 73

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Length = 74

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 155 VRETTVEAVNGHLDILRPAIKN-YGGSVEVLSVESGDCIVKYVGPDS----IASGIRAAI 209
           + E   E V   L+ +RP +    GG ++ L ++     V+  GP +    +   +   +
Sbjct: 1   MLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKL 60

Query: 210 KEKFPDIENV 219
           +EK P I+ V
Sbjct: 61  REKIPSIQIV 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	100.0
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	99.92
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	99.9
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	99.83
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	99.8
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	99.8
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	99.77
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.74
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	96.47
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	95.07
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	94.73
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	94.66
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	90.45
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	90.3

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=100.00  E-value=4.6e-44  Score=296.48  Aligned_cols=146  Identities=40%  Similarity=0.691  Sum_probs=135.5

Q ss_pred             hhhHHHHHHHHHhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccchh
Q 027469           76 DLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV  155 (223)
Q Consensus        76 ~l~~~~v~~~l~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~  155 (223)
                      ++..++|+.+|++|||+|++|||||++++|++++|+|||+|||+|||+|++||+.+||++|++++| +++.|+.+.+++.
T Consensus         3 ~~~~e~v~~~L~~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vp-ev~~V~~v~~~~e   81 (154)
T 2z51_A            3 PLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIP-EIVAVEALPDEET   81 (154)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCT-TCCEEEECCSSCC
T ss_pred             cchHHHHHHHHHHhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCC-CceEEEEccCchh
Confidence            356788999999999999999999999999999999999999999999999999999999999998 5888888876542


Q ss_pred             -hhhhHHHhhcccccchhHHHh-cCCcEEEEEEeCCEEEEEEeCh----hhHHHHHHHHHHhhCCCcceEEeC
Q 027469          156 -RETTVEAVNGHLDILRPAIKN-YGGSVEVLSVESGDCIVKYVGP----DSIASGIRAAIKEKFPDIENVVFT  222 (223)
Q Consensus       156 -~e~l~e~I~~~L~~IRP~L~~-~GGdvelv~v~~g~v~vrl~G~----~Tlk~gIE~~L~e~~Pei~~V~~v  222 (223)
                       .+.+.++|+++|++|||+|++ ||||+||++|++++|+|||+|+    +|+|++||++|++++|+|++|+++
T Consensus        82 ~l~L~~~~v~~~L~~iRP~L~~~dGGdvelv~v~~~~v~v~l~Gac~~~~Tlk~~Ie~~l~e~vP~i~~V~~~  154 (154)
T 2z51_A           82 GLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI  154 (154)
T ss_dssp             SCCSSHHHHHHHHHHHGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEEECCEEEEEEecCCcccHhHHHHHHHHHHHHCCCccEEEeC
Confidence             345678999999999999997 9999999999999999999999    899999999999999999999874

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=99.92  E-value=2.9e-25  Score=168.75  Aligned_cols=74  Identities=47%  Similarity=0.884  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccc
Q 027469           79 AKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDE  153 (223)
Q Consensus        79 ~~~v~~~l~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~  153 (223)
                      .++|+.+|++|||+|++|||||+|++|++|+|+|||+|||+|||+|++||+++||++|++++| +++.|++++++
T Consensus         9 ~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vP-ev~~V~~v~~~   82 (88)
T 1xhj_A            9 FDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVP-GVIEVEQVFLE   82 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHST-TCCEEEEEECC
T ss_pred             HHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCC-CceEEEecccc
Confidence            577999998899999999999999999999999999999999999999999999999999998 68888887654

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=99.90  E-value=3.2e-24  Score=164.14  Aligned_cols=74  Identities=35%  Similarity=0.636  Sum_probs=68.7

Q ss_pred             HHHHHHHHH-hhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccc
Q 027469           79 AKNVDLVLE-DVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDE  153 (223)
Q Consensus        79 ~~~v~~~l~-~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~  153 (223)
                      .+.|+.+|+ +|||+|++|||||+|++|++|+|+|||+|||+|||+|++||+++||++|++++| +++.|+.+.++
T Consensus        15 ~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vp-ev~~V~~v~~~   89 (92)
T 1veh_A           15 VAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIP-EVEGVEQVSGP   89 (92)
T ss_dssp             HHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCS-SCCCEEECSCS
T ss_pred             HHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCC-CCCEEEEcCCC
Confidence            577999995 799999999999999999999999999999999999999999999999999998 58888888654

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=99.83  E-value=1.2e-21  Score=144.38  Aligned_cols=70  Identities=29%  Similarity=0.619  Sum_probs=64.3

Q ss_pred             hhhHHHHHHHHHhhhhHHHhcC-CceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCccccccccc
Q 027469           76 DLTAKNVDLVLEDVRPYLIADG-GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV  150 (223)
Q Consensus        76 ~l~~~~v~~~l~~IrP~Lq~dG-GdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V  150 (223)
                      ++..++|+.+|++|||+|++|| ||+|+++|++++|+|||+|||+||    +||+++||++|++++| +++.|+.+
T Consensus         3 ~~~~~~V~~~L~~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vp-ei~~V~~v   73 (74)
T 1th5_A            3 ELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIP-SIQIVQLL   73 (74)
T ss_dssp             CCSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCT-TCSEEEEC
T ss_pred             hHHHHHHHHHHHHHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCC-CCcEEEeC
Confidence            4567899999988999999999 999999999999999999999999    6999999999999998 57777654

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=99.80  E-value=2.7e-20  Score=141.35  Aligned_cols=65  Identities=26%  Similarity=0.434  Sum_probs=62.2

Q ss_pred             hhHHHhhcccccchhHHHhcCCcEEEEEEeCCEEEEEEeCh--------hhHHHHHHHHHHhhCCCcceEEeC
Q 027469          158 TTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGP--------DSIASGIRAAIKEKFPDIENVVFT  222 (223)
Q Consensus       158 ~l~e~I~~~L~~IRP~L~~~GGdvelv~v~~g~v~vrl~G~--------~Tlk~gIE~~L~e~~Pei~~V~~v  222 (223)
                      .+.++|+++|++|||+|++|||||+|++|++|+|+|||+|+        +|||+|||++|++++|+|+.|+.+
T Consensus         7 ~~~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v   79 (88)
T 1xhj_A            7 TMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV   79 (88)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             HHHHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEec
Confidence            57899999998899999999999999999999999999999        799999999999999999999875

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=99.80  E-value=2.3e-20  Score=137.58  Aligned_cols=66  Identities=24%  Similarity=0.447  Sum_probs=62.9

Q ss_pred             hhHHHhhcccccchhHHHhcC-CcEEEEEEeCCEEEEEEeCh----hhHHHHHHHHHHhhCCCcceEEeCC
Q 027469          158 TTVEAVNGHLDILRPAIKNYG-GSVEVLSVESGDCIVKYVGP----DSIASGIRAAIKEKFPDIENVVFTD  223 (223)
Q Consensus       158 ~l~e~I~~~L~~IRP~L~~~G-Gdvelv~v~~g~v~vrl~G~----~Tlk~gIE~~L~e~~Pei~~V~~v~  223 (223)
                      .+.++|+++|++|||+|++|| ||++|++|++++|+|||+|+    +|||+|||++|++++|+|++|+.++
T Consensus         4 ~~~~~V~~~L~~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc~Tlk~gIe~~L~~~vpei~~V~~v~   74 (74)
T 1th5_A            4 LNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLLS   74 (74)
T ss_dssp             CSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEEEECC
T ss_pred             HHHHHHHHHHHHHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcchHHHHHHHHHHHHHHCCCCcEEEeCC
Confidence            467899999988999999999 99999999999999999999    7999999999999999999999875

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=99.77  E-value=2.8e-19  Score=136.73  Aligned_cols=67  Identities=27%  Similarity=0.431  Sum_probs=63.2

Q ss_pred             hhhhHHHhhcccc-cchhHHHhcCCcEEEEEEeCCEEEEEEeCh--------hhHHHHHHHHHHhhCCCcceEEeC
Q 027469          156 RETTVEAVNGHLD-ILRPAIKNYGGSVEVLSVESGDCIVKYVGP--------DSIASGIRAAIKEKFPDIENVVFT  222 (223)
Q Consensus       156 ~e~l~e~I~~~L~-~IRP~L~~~GGdvelv~v~~g~v~vrl~G~--------~Tlk~gIE~~L~e~~Pei~~V~~v  222 (223)
                      ++.+.++|+++|+ +|||+|++|||||+|++|++|+|+|||+|+        +|||++||++|++++|+++.|+.+
T Consensus        11 d~~~~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v   86 (92)
T 1veh_A           11 DDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV   86 (92)
T ss_dssp             CCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred             chHHHHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEc
Confidence            3478899999996 799999999999999999999999999999        799999999999999999999976

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.74  E-value=2.9e-18  Score=141.82  Aligned_cols=70  Identities=31%  Similarity=0.692  Sum_probs=64.0

Q ss_pred             hhhhHHHHHHHHHhhhhHHHh-cCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccc
Q 027469           75 FDLTAKNVDLVLEDVRPYLIA-DGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQ  149 (223)
Q Consensus        75 ~~l~~~~v~~~l~~IrP~Lq~-dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~  149 (223)
                      +++..++|+.+|++|||||++ ||||+|++||++++|+|||+|+|++|    +|++++||++|++++| +++.|..
T Consensus        83 l~L~~~~v~~~L~~iRP~L~~~dGGdvelv~v~~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e~vP-~i~~V~~  153 (154)
T 2z51_A           83 LELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGV----MTVRVAVTQKLREKIP-SIAAVQL  153 (154)
T ss_dssp             CCSSHHHHHHHHHHHGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGC----HHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEEECCEEEEEEecCCccc----HhHHHHHHHHHHHHCC-CccEEEe
Confidence            456778999999999999997 99999999999999999999999998    7999999999999999 5776653

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=96.47  E-value=0.0071  Score=45.46  Aligned_cols=67  Identities=18%  Similarity=0.232  Sum_probs=55.0

Q ss_pred             hHHHHHHHH-HhhhhHHHhcC---CceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccc
Q 027469           78 TAKNVDLVL-EDVRPYLIADG---GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDI  147 (223)
Q Consensus        78 ~~~~v~~~l-~~IrP~Lq~dG---GdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V  147 (223)
                      ..+.|..+| .-..|.+..+-   |-|.-++++++.|+|.+...+.+||. ..+|+..|+++|++ +| +++.+
T Consensus         7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~-l~-gv~~V   77 (103)
T 3cq1_A            7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPL-HDSLGEAVRQALSR-LP-GVEEV   77 (103)
T ss_dssp             HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCS-SCHHHHHHHHHHHT-ST-TCCEE
T ss_pred             HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcH-HHHHHHHHHHHHHh-CC-CceeE
Confidence            346788888 56789998887   88888999999999999999999997 66788999999975 55 45544

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=95.07  E-value=0.038  Score=41.95  Aligned_cols=74  Identities=15%  Similarity=0.236  Sum_probs=55.8

Q ss_pred             chhhhhHHHHHHHH-HhhhhHHHhc---CCceEEEeeeC-CEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccc
Q 027469           73 HQFDLTAKNVDLVL-EDVRPYLIAD---GGNIDVVSVED-GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDI  147 (223)
Q Consensus        73 ~~~~l~~~~v~~~l-~~IrP~Lq~d---GGdVelvdv~~-g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V  147 (223)
                      .+-+...+.|..+| .-.-|.+..+   -|-|.=+.+++ |.|+|.|.-...+||.. ..|+..|+++|+..+| +++.+
T Consensus         4 ~~~~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~-~~i~~~i~~al~~~l~-Gv~~V   81 (108)
T 3lno_A            4 MSQEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMA-GQIVSDVKKVLSTNVP-EVNEI   81 (108)
T ss_dssp             HHHHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTH-HHHHHHHHHHHHHHCT-TCCCE
T ss_pred             cchhhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHH-HHHHHHHHHHHHHhCC-CCceE
Confidence            34456667888888 4557877543   47788888875 89999999999999975 5788999999965576 46544


Q ss_pred             c
Q 027469          148 R  148 (223)
Q Consensus       148 ~  148 (223)
                      .
T Consensus        82 ~   82 (108)
T 3lno_A           82 E   82 (108)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=94.73  E-value=0.073  Score=39.82  Aligned_cols=62  Identities=23%  Similarity=0.317  Sum_probs=50.3

Q ss_pred             hHHHhhcccc-cchhHHHhcC---CcEEEEEEeCCEEEEEEeCh-------hhHHHHHHHHHHhhCCCcceEEe
Q 027469          159 TVEAVNGHLD-ILRPAIKNYG---GSVEVLSVESGDCIVKYVGP-------DSIASGIRAAIKEKFPDIENVVF  221 (223)
Q Consensus       159 l~e~I~~~L~-~IRP~L~~~G---Gdvelv~v~~g~v~vrl~G~-------~Tlk~gIE~~L~e~~Pei~~V~~  221 (223)
                      +.+.|.++|. -+.|.+..+-   |-|.=++++++.|.|.+.-+       .+++..|+++|+ .+|++..|.+
T Consensus         7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~V~V   79 (103)
T 3cq1_A            7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVEEVEV   79 (103)
T ss_dssp             HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCCEEEE
T ss_pred             HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCceeEEE
Confidence            4567778884 5778887776   88888889888999999877       689999999997 5899888764

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=94.66  E-value=0.061  Score=40.19  Aligned_cols=67  Identities=21%  Similarity=0.266  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHhhh-hHHHhcC---CceEEEeeeC-CEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccc
Q 027469           78 TAKNVDLVLEDVR-PYLIADG---GNIDVVSVED-GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDI  147 (223)
Q Consensus        78 ~~~~v~~~l~~Ir-P~Lq~dG---GdVelvdv~~-g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V  147 (223)
                      ..+.|..+|..+. |.+..+-   |-|.-+++++ |.|+|.+.-.+.+||. ...++..|+++|++ +| +++.+
T Consensus         7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~-l~-gv~~v   78 (103)
T 1uwd_A            7 TKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPL-AGMILSDAEEAIKK-IE-GVNNV   78 (103)
T ss_dssp             CHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSS-HHHHHHHHHHHHHT-SS-SCCEE
T ss_pred             hHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcH-HHHHHHHHHHHHHh-CC-CcceE
Confidence            4567888996555 9987765   6677788875 8999999999999996 67788899999975 55 45443

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=90.45  E-value=0.32  Score=36.21  Aligned_cols=61  Identities=23%  Similarity=0.152  Sum_probs=43.1

Q ss_pred             HHHhhcccccch-hHHHhcC---CcEEEEEEeC-CEEEEEEeCh-------hhHHHHHHHHHHhhCCCcceEEe
Q 027469          160 VEAVNGHLDILR-PAIKNYG---GSVEVLSVES-GDCIVKYVGP-------DSIASGIRAAIKEKFPDIENVVF  221 (223)
Q Consensus       160 ~e~I~~~L~~IR-P~L~~~G---Gdvelv~v~~-g~v~vrl~G~-------~Tlk~gIE~~L~e~~Pei~~V~~  221 (223)
                      .+.|.++|..+. |.+..+-   |-|.=+++++ |.|.|.+.-+       ..++..|+++|+ .+|++..|.+
T Consensus         8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~v~V   80 (103)
T 1uwd_A            8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVNNVEV   80 (103)
T ss_dssp             HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCCEEEE
T ss_pred             HHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCcceEEE
Confidence            345666664333 6666554   6666677764 8888888766       688899999986 4898888764

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=90.30  E-value=0.54  Score=35.45  Aligned_cols=64  Identities=11%  Similarity=0.304  Sum_probs=48.8

Q ss_pred             hhHHHhhcccc-cchhHHHhc---CCcEEEEEEeC-CEEEEEEeCh-------hhHHHHHHHHHHhhCCCcceEEe
Q 027469          158 TTVEAVNGHLD-ILRPAIKNY---GGSVEVLSVES-GDCIVKYVGP-------DSIASGIRAAIKEKFPDIENVVF  221 (223)
Q Consensus       158 ~l~e~I~~~L~-~IRP~L~~~---GGdvelv~v~~-g~v~vrl~G~-------~Tlk~gIE~~L~e~~Pei~~V~~  221 (223)
                      .+.++|.++|. -+-|.+..+   -|-|.=+.+++ |.|.|.|.-+       ..++..|+++|+..+|+++.|.+
T Consensus         8 ~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V   83 (108)
T 3lno_A            8 AFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV   83 (108)
T ss_dssp             HHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred             hhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence            45667777774 457776544   57788888874 8899988766       68889999999777999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1xhja_	88	d.52.8.1 (A:) Nitrogen fixation protein NifU homol	7e-24
d1xhja_	88	d.52.8.1 (A:) Nitrogen fixation protein NifU homol	1e-07
d1th5a1	73	d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {	3e-20
d1th5a1	73	d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {	9e-09
d1veha_	92	d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {	3e-20
d1veha_	92	d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {	8e-06

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

 Score = 88.7 bits (220), Expect = 7e-24
 Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 1/74 (1%)

Query: 80  KNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEK 139
             V  V+E +RP+L+ DGG+  +V VEDG+V ++L GACG+CPSST T+  GIER L E+
Sbjct: 10  DQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEE 69

Query: 140 FGDAIKDIRQVYDE 153
               + ++ QV+ E
Sbjct: 70  VPG-VIEVEQVFLE 82

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 157 ETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDS--------IASGIRAA 208
            T  + V   ++ LRP +   GG   ++ VE G   ++  G           + +GI  A
Sbjct: 6   PTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERA 65

Query: 209 IKEKFPDIENV--VFTD 223
           + E+ P +  V  VF +
Sbjct: 66  LHEEVPGVIEVEQVFLE 82

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 79.0 bits (195), Expect = 3e-20
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 76  DLTAKNVDLVLEDVRPYLIA-DGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIER 134
           +L  +NV+ VL ++RPYL    GG +  + ++  +V V+L G          T+ + + +
Sbjct: 2   ELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVSK 57

Query: 135 VLKEKFGDAIKDIRQV 150
            L+EK    I+ ++ +
Sbjct: 58  KLREKIPS-IQIVQLL 72

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 48.6 bits (116), Expect = 9e-09
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 157 ETTVEAVNGHLDILRPAIK-NYGGSVEVLSVESGDCIVKYVGPDS----IASGIRAAIKE 211
           E   E V   L+ +RP +    GG ++ L ++     V+  GP +    +   +   ++E
Sbjct: 2   ELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLRE 61

Query: 212 KFPDIENV 219
           K P I+ V
Sbjct: 62  KIPSIQIV 69

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.5 bits (196), Expect = 3e-20
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 64  GSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPS 123
           GSS    S    ++ A   +L+   +RP +  DGG++     EDG+V +KLQG+C SCPS
Sbjct: 1   GSSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPS 60

Query: 124 STTTMSMGIERVLKEKFGDAIKDIRQVYDEE 154
           S  T+  GI+ +L+    + ++ + QV    
Sbjct: 61  SIITLKSGIQNMLQFYIPE-VEGVEQVSGPS 90

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 8e-06
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 157 ETTVEAVNGHLD-ILRPAIKNYGGSVEVLSVESGDCIVKYVGPDS--------IASGIRA 207
           +  V  +   LD  +RP ++  GG V     E G   +K  G  +        + SGI+ 
Sbjct: 12  DEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQN 71

Query: 208 AIKEKFPDIENVV 220
            ++   P++E V 
Sbjct: 72  MLQFYIPEVEGVE 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	99.9
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	99.89
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	99.83
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	99.78
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	99.78
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	99.76
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	86.11

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.90  E-value=2.8e-24  Score=161.45  Aligned_cols=72  Identities=47%  Similarity=0.910  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccc
Q 027469           79 AKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVY  151 (223)
Q Consensus        79 ~~~v~~~l~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~  151 (223)
                      .++|+.+|++|||+|++|||||+++++++|.|+|||+|||+|||+|++||+.+||++|++++| +++.|+.|.
T Consensus         9 ~~~I~~vLe~IRP~l~~dGGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vp-ev~~V~~V~   80 (88)
T d1xhja_           9 FDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVP-GVIEVEQVF   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHST-TCCEEEEEE
T ss_pred             HHHHHHHHHHhhHHHHhCCCcEEEEeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCC-CCceEEEec
Confidence            578899999999999999999999999999999999999999999999999999999999999 577788763

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.9e-24  Score=162.58  Aligned_cols=77  Identities=34%  Similarity=0.588  Sum_probs=70.7

Q ss_pred             hhHHHHHHHH-HhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccch
Q 027469           77 LTAKNVDLVL-EDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEE  154 (223)
Q Consensus        77 l~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~  154 (223)
                      -..+.|+.+| ++|||+|++|||||++++|++|.|+|+|.|||+|||++++||+.+||++|++++| +++.|+++++++
T Consensus        13 e~~~~I~~vL~~~IrP~l~~dGGdv~lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vp-ev~~V~~v~~~~   90 (92)
T d1veha_          13 EVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIP-EVEGVEQVSGPS   90 (92)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCS-SCCCEEECSCSC
T ss_pred             HHHHHHHHHHHHhcChHHHHcCCceEEEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCC-CcceEEEcCCCC
Confidence            3447789999 5899999999999999999999999999999999999999999999999999998 698898887653

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.83  E-value=1e-21  Score=142.72  Aligned_cols=71  Identities=28%  Similarity=0.617  Sum_probs=64.4

Q ss_pred             hhhhHHHHHHHHHhhhhHHH-hcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCccccccccc
Q 027469           75 FDLTAKNVDLVLEDVRPYLI-ADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV  150 (223)
Q Consensus        75 ~~l~~~~v~~~l~~IrP~Lq-~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V  150 (223)
                      ++++.++|+.+|+++||+|+ .|||||++++++++.|+|||+|+|+||+    ||+.+||++|++++| +++.|+.+
T Consensus         1 mel~ee~V~~vL~eirP~l~a~dGGdvelv~i~~~~v~v~l~GaC~gC~----Tl~~gIe~~L~~~iP-ei~~V~~v   72 (73)
T d1th5a1           1 LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVSKKLREKIP-SIQIVQLL   72 (73)
T ss_dssp             CCCSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSS----SHHHHHHHHHHHHCT-TCSEEEEC
T ss_pred             CCCCHHHHHHHHHHhcccccccCCceEEEEEecCCEEEEEecCCCcccc----hHHHHHHHHHHHHCC-CccEEEec
Confidence            35778999999999999998 6999999999999999999999999994    999999999999998 58766543

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.78  E-value=6e-20  Score=137.58  Aligned_cols=66  Identities=26%  Similarity=0.425  Sum_probs=63.0

Q ss_pred             hhhHHHhhcccccchhHHHhcCCcEEEEEEeCCEEEEEEeCh--------hhHHHHHHHHHHhhCCCcceEEeC
Q 027469          157 ETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGP--------DSIASGIRAAIKEKFPDIENVVFT  222 (223)
Q Consensus       157 e~l~e~I~~~L~~IRP~L~~~GGdvelv~v~~g~v~vrl~G~--------~Tlk~gIE~~L~e~~Pei~~V~~v  222 (223)
                      ..+.++|+++|++|||+|++|||||+|+++++|+|+|||+|+        +|+|++||++|++++|+++.|+.|
T Consensus         6 ~~l~~~I~~vLe~IRP~l~~dGGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V   79 (88)
T d1xhja_           6 PTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV   79 (88)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHhhHHHHhCCCcEEEEeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEEe
Confidence            368899999999999999999999999999999999999998        899999999999999999999875

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.78  E-value=2.9e-20  Score=134.98  Aligned_cols=66  Identities=24%  Similarity=0.437  Sum_probs=62.8

Q ss_pred             hhHHHhhcccccchhHHH-hcCCcEEEEEEeCCEEEEEEeCh----hhHHHHHHHHHHhhCCCcceEEeCC
Q 027469          158 TTVEAVNGHLDILRPAIK-NYGGSVEVLSVESGDCIVKYVGP----DSIASGIRAAIKEKFPDIENVVFTD  223 (223)
Q Consensus       158 ~l~e~I~~~L~~IRP~L~-~~GGdvelv~v~~g~v~vrl~G~----~Tlk~gIE~~L~e~~Pei~~V~~v~  223 (223)
                      .++++|+++|++|||+|+ +|||||+|+++++++|+|||+|+    .|||++||+.|+++||||+.|+++|
T Consensus         3 l~ee~V~~vL~eirP~l~a~dGGdvelv~i~~~~v~v~l~GaC~gC~Tl~~gIe~~L~~~iPei~~V~~v~   73 (73)
T d1th5a1           3 LNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLLS   73 (73)
T ss_dssp             CSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEEEECC
T ss_pred             CCHHHHHHHHHHhcccccccCCceEEEEEecCCEEEEEecCCCcccchHHHHHHHHHHHHCCCccEEEecC
Confidence            467899999999999997 69999999999999999999999    8999999999999999999999886

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.7e-19  Score=136.13  Aligned_cols=68  Identities=26%  Similarity=0.428  Sum_probs=64.3

Q ss_pred             hhhhHHHhhcccc-cchhHHHhcCCcEEEEEEeCCEEEEEEeCh--------hhHHHHHHHHHHhhCCCcceEEeCC
Q 027469          156 RETTVEAVNGHLD-ILRPAIKNYGGSVEVLSVESGDCIVKYVGP--------DSIASGIRAAIKEKFPDIENVVFTD  223 (223)
Q Consensus       156 ~e~l~e~I~~~L~-~IRP~L~~~GGdvelv~v~~g~v~vrl~G~--------~Tlk~gIE~~L~e~~Pei~~V~~v~  223 (223)
                      ++.+.++|+++|+ +|||+|++|||||+|++|++|+|+|+|+|+        +|||++||++|++++|||+.|+.++
T Consensus        11 d~e~~~~I~~vL~~~IrP~l~~dGGdv~lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~~v~   87 (92)
T d1veha_          11 DDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVS   87 (92)
T ss_dssp             CCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEECS
T ss_pred             cHHHHHHHHHHHHHhcChHHHHcCCceEEEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEEEcC
Confidence            4578899999995 899999999999999999999999999999        8999999999999999999999875

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=86.11  E-value=0.93  Score=31.55  Aligned_cols=66  Identities=17%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             HHHHHHHH-HhhhhHHHh---cCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccc
Q 027469           79 AKNVDLVL-EDVRPYLIA---DGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDI  147 (223)
Q Consensus        79 ~~~v~~~l-~~IrP~Lq~---dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V  147 (223)
                      .+++..+| .-+-|.+..   +=|-|.=+.+++|.++|.|.-.+.+||.... +.+.|+++|++ ++ ++++|
T Consensus         3 e~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~~~~v~v~l~lt~~~cp~~~~-i~~~i~~al~~-l~-gv~~V   72 (91)
T d2cu6a1           3 EAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDS-LGEAVRQALSR-LP-GVEEV   72 (91)
T ss_dssp             HHHHHHHHTTCEETTTTEETTTTTCEEEEEEETTEEEEEECCSSSSCCSSCH-HHHHHHHHHHT-ST-TCCEE
T ss_pred             HHHHHHHHhcCCCCCCCcChhhccceeEEEEeccccEEEEEcCCCCCcHHHH-HHHHHHHHHHc-CC-CCceE
Confidence            45566666 566676653   3466777888999999999999999997655 77788888875 55 45544