Citrus Sinensis ID: 027470

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQQQNLHQGTGGYGSSDLTLA
Secondary Structure (PSIPRED)
cccccccHHHcccccccccccccccccHHHHHcHHHHcccccEEEEEEEccccEEEcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccEEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgrgkieikrienptnrqvtYSKRRNGIFKKAQELTVLCDAKVSLIMFsntgkfheyispttttKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGnilldfetkyddphyglvdngdYQSAMALANGASNLYAFRMQQQnlhqgtggygssdltla
Flexible Loop (DISEMBL)
mgrgkieikrienptnrqvtyskrrngifkkaqeltvLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLeqnmsssaatvrerkfhviktqtdtykkkvrnleeRHGNILLDFETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQQQNLhqgtggygssdltla
Low Complexity Region (SEG)
MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQQQNLHQGTGGYGSSDLTLA
Disordered region (IsUnstruct)
***********************RRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKL********************************************KFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRM********************
Disordered Region (DISOPRED)
MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGV***********ESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDF********************************FRMQ************S*DLTL*
Disordered Region (DISEMBL)
MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQQQNLHQGTGGYGSSDLTLA
Disordered Region (DISPRO)
****KIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQQQNLH**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHxxxxxxxxxxxxxxxxxxxxxIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQQQNLHQGTGGYGSSDLTLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
P23706	227	Floral homeotic protein D	N/A	no	0.973	0.955	0.604	8e-76
Q07472	231	Floral homeotic protein P	N/A	no	0.905	0.874	0.627	1e-72
P35632	232	Floral homeotic protein A	yes	no	0.986	0.948	0.533	2e-61
Q944S9	224	MADS-box transcription fa	yes	no	0.991	0.986	0.553	1e-60
Q42498	214	MADS-box protein CMB2 OS=	N/A	no	0.802	0.836	0.558	3e-57
Q07474	212	Floral homeotic protein P	N/A	no	0.704	0.740	0.472	4e-37
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.950	0.894	0.400	7e-36
Q03378	215	Floral homeotic protein G	N/A	no	0.892	0.925	0.366	3e-35
Q6H711	260	MADS-box transcription fa	no	no	0.860	0.738	0.388	8e-34
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.699	0.602	0.431	4e-33

>sp|P23706|DEFA_ANTMA Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1

 Score =  283 bits (723), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 136/225 (60%), Positives = 170/225 (75%), Gaps = 8/225 (3%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           M RGKI+IKRIEN TNRQVTYSKRRNG+FKKA EL+VLCDAKVS+IM S+T K HEYISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           TT TK++FDQYQK++GVDLWS+HY KMQE  +KL E+N  LR++IRQRMGE L+DL +E+
Sbjct: 61  TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
           +  L ++M +S   +RERK+ VI  Q DT KKKVRN+EE H N++L+F+ + +DPH+GLV
Sbjct: 121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLV 180

Query: 181 DN-GDYQSAMALANGASNLYAFRM---QQQNLHQGTGGYGSSDLT 221
           DN GDY S +   NG   + A R+       LH G    G SDLT
Sbjct: 181 DNEGDYNSVLGFPNGGPRIIALRLPTNHHPTLHSG----GGSDLT 221

Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Antirrhinum majus (taxid: 4151)

>sp|Q07472|MADS1_PETHY Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1

 Score =  272 bits (696), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 128/204 (62%), Positives = 162/204 (79%), Gaps = 2/204 (0%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           M RGKI+IKRIEN TNRQVTYSKRRNG+FKKA ELTVLCDAKVS+IM S+TGK HE+ISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           + TTK++FD YQK++GVDLW++HY KMQE  RKLKE+N  LRK+IRQRMGE L+DL +E+
Sbjct: 61  SITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQ 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
           L  L +N+ +S   +RERK+ VI  Q +T+KKKVRN+EE H N+LL+F+ + +DP YGLV
Sbjct: 121 LEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEFDARQEDP-YGLV 179

Query: 181 DN-GDYQSAMALANGASNLYAFRM 203
           +  GDY S +   NG   + A R+
Sbjct: 180 EQEGDYNSVLGFPNGGHRILALRL 203

Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.

Petunia hybrida (taxid: 4102)

>sp|P35632|AP3_ARATH Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1

 Score =  234 bits (598), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 153/225 (68%), Gaps = 5/225 (2%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           M RGKI+IKRIEN TNRQVTYSKRRNG+FKKA ELTVLCDA+VS+IMFS++ K HEYISP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
            TTTK++ D YQ    VD+W+T Y +MQE+ RKL E N  LR  I+QR+GE LD+L  +E
Sbjct: 61  NTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQE 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
           LR LE  M ++   VRERKF  +  Q +T KKK ++ ++   N++ + E + +DPHYGLV
Sbjct: 121 LRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDPHYGLV 180

Query: 181 DN-GDYQSAMALANGASNLYAFRMQQQNLH----QGTGGYGSSDL 220
           DN GDY S +      S  YA R  Q + H     G     +SD+
Sbjct: 181 DNGGDYDSVLGYQIEGSRAYALRFHQNHHHYYPNHGLHAPSASDI 225

Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms an heterodimer with PISTILLATA that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score =  233 bits (593), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 162/226 (71%), Gaps = 5/226 (2%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIKRIEN TNRQVTYSKRR GI KKA+ELTVLCDA+V++IMFS+TGK+HE+ SP
Sbjct: 1   MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           +T  K +FD+YQ+++G  LW   Y  MQ +   LK+IN  LR +IRQRMGEDLD L F+E
Sbjct: 61  STDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDE 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
           LRGLEQN+ ++   VR RK+HVI TQT+TYKKKV++  E +  +  +   + ++P +G V
Sbjct: 121 LRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETLQQELGLR-EEPAFGFV 179

Query: 181 DN-GDYQSAMALANGASNLYAFRM--QQQNLHQGTGGYGSSDLTLA 223
           DN G      A A  A++++AFR+   Q NLH G    G+ DL L 
Sbjct: 180 DNTGGGWDGGAGAGAAADMFAFRVVPSQPNLH-GMAYGGNHDLRLG 224

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q42498|CMB2_DIACA MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1

 Score =  221 bits (563), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 136/179 (75%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGK+EI++IEN TNRQVT+SKRRNGI KKAQELTVLCDAKVSL+M S+T K H Y+SP
Sbjct: 1   MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
             + KKM+D+YQK  GVDLW   + +MQE +RK+ E+N+ LR++I +RMG DL+ LT  E
Sbjct: 61  GVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVE 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGL 179
           L  L+Q M  +   +R +K+H IK QT T +KK++NLEERH +++++ E K+  P + +
Sbjct: 121 LSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDLVMELEAKFRGPQFAI 179

Dianthus caryophyllus (taxid: 3570)

>sp|Q07474|MADS2_PETHY Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1

 Score =  154 bits (389), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 109/161 (67%), Gaps = 4/161 (2%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIKRIEN +NRQVTYSKRRNGI KKA+E+TVLCDAKVSLI+F N+GK HEY SP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           +TT   M D YQK+ G  LW   +  +     ++K+ N+ ++  +R   GED++ L  +E
Sbjct: 61  STTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKE 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 161
           L  LE+ +++  +++  ++  +++      +K  + LEE H
Sbjct: 121 LMVLEEGLTNGLSSISAKQSEILR----MVRKNDQILEEEH 157

Transcription factor involved in the genetic control of flower development.

Petunia hybrida (taxid: 4102)

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score =  150 bits (379), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 137/227 (60%), Gaps = 15/227 (6%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIKRIEN TNRQVT+SKRR G+ KKA EL+VLCDA++ LI+FS++GK  EY S 
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           +++ KK+ ++YQK  G  +       +     ++K  N KL+ +IR+ MGEDL  LT  E
Sbjct: 61  SSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTE 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGN---ILLDFETKYDDPHY 177
           L  L Q + S+++ VR RK  ++  Q +  ++K R LE+++ +   +L + +   +    
Sbjct: 121 LHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQE 180

Query: 178 GLVDNG------DYQSAMALANGA----SNLYAFRMQ--QQNLHQGT 212
            L++ G      D ++A A   G      +L AFR+Q  Q NL + +
Sbjct: 181 PLLEFGVFCPPPDNKTAAAANAGPLHLGHHLPAFRLQPTQPNLQESS 227

Probable transcription factor.

Gnetum gnemon (taxid: 3382)

>sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1

 Score =  148 bits (373), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 25/224 (11%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIKRIEN +NRQVTYSKRRNGI KKA+E++VLCDA VS+I+F+++GK HE+ SP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           +TT   M D Y K  G  LW   +  +     ++K+ N+ ++ ++R   GED+  L ++E
Sbjct: 61  STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIK------------TQTDTYKKKVRNLEERHGNILLDF 168
           L  LE  + +  + ++ ++   ++             Q+  +K +  +L+  + N+ ++ 
Sbjct: 121 LMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEENQSLQFKLRQMHLDPMNDNV-MES 179

Query: 169 ETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQ--QQNLHQ 210
           +  YD  H+  +   DY++ M         +AFR+Q  Q NL +
Sbjct: 180 QAVYDHHHHQNI--ADYEAQMP--------FAFRVQPMQPNLQE 213

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Antirrhinum majus (taxid: 4151)

>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1

 Score =  143 bits (361), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 123/206 (59%), Gaps = 14/206 (6%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIKRIEN TNRQVT+SKRR G+ KKA EL VLCDA+V +++FS+TGK  EY SP
Sbjct: 1   MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKM---QESYRKLKEINNKLRK---DIRQRMGEDLD 114
           T + +++ + YQ      + +TH+ ++   Q+ + ++  + N++ K    IR+  G+DL 
Sbjct: 61  TCSLRELIEHYQT-----VTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLS 115

Query: 115 DLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDD 174
           +LT  ++  LEQ +  S   VR RK  ++  Q D  ++K   LE+++  +       +  
Sbjct: 116 NLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINENH-- 173

Query: 175 PHYGLVDNGDYQSAMALANGASNLYA 200
            H   V  GD ++ + +A   S L A
Sbjct: 174 -HQAAVGGGDVKAMVEMAPVLSMLTA 198

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score =  141 bits (355), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 11/167 (6%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIKRIEN TNRQVT+SKRR G+ KKA EL VLCDA+V +++FS+TGK  EY SP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEIN------NKLRKDIRQRMGEDLD 114
             + +++ +QYQ +      ++H+ ++    + L E+        KL   IR+  G+DL 
Sbjct: 61  ACSLRELIEQYQHA-----TNSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLS 115

Query: 115 DLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 161
            LT +++  LEQ +  S + VR RK  ++  Q D  ++K + LE+++
Sbjct: 116 SLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQN 162

Probable transcription factor.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
225431227	225	PREDICTED: floral homeotic protein DEFIC	0.995	0.986	0.796	1e-101
147868421	227	B-class MADS-box protein TM6-2 [Carica p	0.991	0.973	0.755	3e-95
315418852	227	AP3 [Actinidia chinensis]	1.0	0.982	0.748	2e-91
224134178	229	MIKC mads-box transcription factor [Popu	0.995	0.969	0.717	3e-91
147868419	227	B-class MADS-box protein TM6-1 [Carica p	0.995	0.977	0.728	2e-89
197244657	226	APETALA3 like protein [Hydrangea macroph	1.0	0.986	0.699	3e-87
262071543	214	MADS-domain transcription factor, partia	0.932	0.971	0.751	4e-87
262071545	215	MADS-domain transcription factor, partia	0.932	0.967	0.738	2e-86
262071537	209	MADS-domain transcription factor, partia	0.923	0.985	0.738	4e-86
262071515	213	MADS-domain transcription factor, partia	0.932	0.976	0.735	8e-86

>gi|225431227|ref|XP_002273223.1| PREDICTED: floral homeotic protein DEFICIENS [Vitis vinifera] gi|115492982|gb|ABI98021.1| flowering-related B-class MADS-box protein [Vitis vinifera] gi|147802866|emb|CAN66176.1| hypothetical protein VITISV_019954 [Vitis vinifera]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/226 (79%), Positives = 202/226 (89%), Gaps = 4/226 (1%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEY SP
Sbjct: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYTSP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           T TTKK++DQYQK+LG+DLWS+HY +MQE+ RKLKEINNKLR++IRQRMGEDL DL+ E+
Sbjct: 61  TITTKKVYDQYQKTLGIDLWSSHYERMQENLRKLKEINNKLRREIRQRMGEDLGDLSIED 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
           LRGLEQ M +S   VRERK+HVIKTQT+TY+KKVRNLEE+HGN+LL+FE K DDPHYGLV
Sbjct: 121 LRGLEQKMDASLGLVRERKYHVIKTQTETYRKKVRNLEEQHGNLLLNFEAKCDDPHYGLV 180

Query: 181 DN-GDYQSAMALANGASNLYAFRMQQ--QNLHQGTGGYGSSDLTLA 223
           +N GDY+SA+A ANGASNLYAFR+ Q   NLH   GGYGS DL LA
Sbjct: 181 ENDGDYESAVAFANGASNLYAFRLHQAHPNLHH-DGGYGSHDLRLA 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147868421|gb|ABQ51322.1| B-class MADS-box protein TM6-2 [Carica papaya]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 173/229 (75%), Positives = 197/229 (86%), Gaps = 8/229 (3%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIM SNTGK HE+ISP
Sbjct: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMISNTGKLHEFISP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           T TTKKM DQYQ +LGVDLWSTHY KMQ++ +KL+EINNKLR++IRQR GEDL D + EE
Sbjct: 61  TATTKKMIDQYQSTLGVDLWSTHYQKMQDNLKKLREINNKLRREIRQRSGEDLHDASVEE 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYD-DPHYGL 179
           LRGLEQNM+S+   +RERKFH IKTQTDTYKKKVRNLEE++GN+LL FET+Y  DPHYGL
Sbjct: 121 LRGLEQNMASALEVIRERKFHTIKTQTDTYKKKVRNLEEQNGNLLLKFETRYHGDPHYGL 180

Query: 180 VDNG-DYQSAMALANGASNLYAFRMQQ----QNLHQGTGGYGSSDLTLA 223
           ++N  DY+SA+ALANGASNL+AFR+       +LH   GG+G SDL LA
Sbjct: 181 IENERDYESAIALANGASNLHAFRLHHNHHPNDLH--LGGFGCSDLRLA 227

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315418852|gb|ADU15473.1| AP3 [Actinidia chinensis]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/227 (74%), Positives = 194/227 (85%), Gaps = 4/227 (1%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIM SNTGK HEYISP
Sbjct: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTGKLHEYISP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
             +TKK++DQYQK+LG+DLWSTHY +MQE  RKLKE+NN+LR++IRQ+MGE+L+DL+  E
Sbjct: 61  NISTKKIYDQYQKTLGIDLWSTHYERMQEHLRKLKEVNNRLRREIRQKMGEELNDLSVHE 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYD-DPHYGL 179
           LRGLEQ MS+S   +R+RK+HVIKTQT+TY+KKVRNLEERHGN+LLDFE K D  P Y L
Sbjct: 121 LRGLEQKMSASLTIIRDRKYHVIKTQTETYRKKVRNLEERHGNLLLDFEAKCDLAPQYEL 180

Query: 180 VDN-GDYQSAMALANGASNLYAFRMQ--QQNLHQGTGGYGSSDLTLA 223
           V+N GDY SA+A ANG SNLYAFR+Q    NLH   GG GS DL LA
Sbjct: 181 VENEGDYDSAVAFANGVSNLYAFRLQPNHPNLHHHGGGCGSHDLRLA 227

Source: Actinidia chinensis

Species: Actinidia chinensis

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134178|ref|XP_002327775.1| MIKC mads-box transcription factor [Populus trichocarpa] gi|222836860|gb|EEE75253.1| MIKC mads-box transcription factor [Populus trichocarpa]

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 165/230 (71%), Positives = 194/230 (84%), Gaps = 8/230 (3%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIK+IENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNT KFHEYISP
Sbjct: 1   MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTNKFHEYISP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           +TTTKK++DQYQK+LG+DLWS  Y KMQE  RKLK+IN+KL+K+IRQR+GEDL++L+ + 
Sbjct: 61  STTTKKIYDQYQKALGIDLWSAQYEKMQEQLRKLKDINHKLKKEIRQRIGEDLNELSIDH 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
           LR LEQNM+ +   VR RK+HVIKTQT+TYKKKVR+LEERHGN+ +++E K +DP YGLV
Sbjct: 121 LRVLEQNMTEALNGVRGRKYHVIKTQTETYKKKVRSLEERHGNLWMEYEAKMEDPRYGLV 180

Query: 181 DN-GDYQSAMALANGASNLYAFRMQQ------QNLHQGTGGYGSSDLTLA 223
           D+ GDY+SA AL NGASNLYAFR+ Q       NLH   GG+G  DL L 
Sbjct: 181 DSEGDYESAAALVNGASNLYAFRLHQGHHHHHPNLHLA-GGFGPHDLRLP 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147868419|gb|ABQ51321.1| B-class MADS-box protein TM6-1 [Carica papaya] gi|187942346|gb|ACD39983.1| MADS2 [Carica papaya]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 166/228 (72%), Positives = 193/228 (84%), Gaps = 6/228 (2%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIM SNTGK HE+ISP
Sbjct: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMISNTGKLHEFISP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           TTTTKKM DQYQ +LGVDLWSTHY KMQ++ +KL++IN+KLR++IR+R GEDL D++ EE
Sbjct: 61  TTTTKKMIDQYQSTLGVDLWSTHYQKMQDNLKKLRDINSKLRREIRRRNGEDLHDMSVEE 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFET-KYDDPHYGL 179
           LRGLEQNM+S+   +RERKFH IKT TDTYKKKVRNLEE++GN+LL F+T  ++DPHYGL
Sbjct: 121 LRGLEQNMASALEVIRERKFHTIKTLTDTYKKKVRNLEEQNGNLLLKFDTGCHNDPHYGL 180

Query: 180 VDNG-DYQSAMALANGASNLYAFRMQQQNLHQGT---GGYGSSDLTLA 223
           V+N  DY+SA+ALAN ASNL AFR+   N H      G +  SDL LA
Sbjct: 181 VENERDYESAIALANEASNLQAFRL-HHNHHPNNLYLGRFDCSDLRLA 227

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197244657|dbj|BAG68950.1| APETALA3 like protein [Hydrangea macrophylla]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/226 (69%), Positives = 186/226 (82%), Gaps = 3/226 (1%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           MGRG+IEIKRIENPTNRQVTYSKRRNGI KKAQELTVLCDAKVSLIM S TGKFHEY SP
Sbjct: 1   MGRGRIEIKRIENPTNRQVTYSKRRNGIIKKAQELTVLCDAKVSLIMISTTGKFHEYTSP 60

Query: 61  TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
           +TTTK+++DQYQK+L +DLWSTHY +MQE  RKLKE+NNKLR++I QR+GEDL+DL   E
Sbjct: 61  STTTKQIYDQYQKTLDIDLWSTHYERMQEHLRKLKEVNNKLRREISQRLGEDLNDLNLNE 120

Query: 121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
           LR LEQ  ++S A +RERK+HV+KTQT+T +KKVRNLEER+GN+ LD+E K +D  YGLV
Sbjct: 121 LRDLEQKSAASTAVIRERKYHVLKTQTETCRKKVRNLEERYGNLFLDWEGKCEDLQYGLV 180

Query: 181 DN-GDYQSAMALANGASNLYAFRMQ--QQNLHQGTGGYGSSDLTLA 223
           +N G+Y SA+A AN   N YAF +Q    NLH G G YGS DL LA
Sbjct: 181 ENDGEYDSAVAFANRVPNSYAFGLQPSHPNLHHGGGVYGSHDLRLA 226

Source: Hydrangea macrophylla

Species: Hydrangea macrophylla

Genus: Hydrangea

Family: Hydrangeaceae

Order: Cornales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262071543|gb|ACY08896.1| MADS-domain transcription factor, partial [Clethra tomentosa]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 160/213 (75%), Positives = 181/213 (84%), Gaps = 5/213 (2%)

Query: 15  TNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKS 74
           TNRQVTYSKRRNGIFKKAQEL+VLCDAKVSL+MFSNTGKFHEYISP  TTKK++DQYQK+
Sbjct: 3   TNRQVTYSKRRNGIFKKAQELSVLCDAKVSLLMFSNTGKFHEYISPGITTKKIYDQYQKA 62

Query: 75  LGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAAT 134
           LG+DLW THY +MQE+ RKLKEINN+LR+DIRQRMGEDL  L   ELRGLEQ M+   A 
Sbjct: 63  LGIDLWRTHYERMQENLRKLKEINNRLRRDIRQRMGEDLHHLDIHELRGLEQKMTEPLAI 122

Query: 135 VRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDN-GDYQSAMALAN 193
           +RERK+HV+KT TDTYKKKVRNLEERHGN+LLDFE K +DP YGLVDN  DY SA+A+AN
Sbjct: 123 IRERKYHVLKTSTDTYKKKVRNLEERHGNLLLDFEAKCEDPRYGLVDNEEDYDSAVAVAN 182

Query: 194 GASNLYAFRMQ--QQNLHQGTGGYGSS-DLTLA 223
           G SN+YAFR+Q    NLH G G +GSS DL LA
Sbjct: 183 GVSNIYAFRLQPSHPNLHHG-GSFGSSHDLRLA 214

Source: Clethra tomentosa

Species: Clethra tomentosa

Genus: Clethra

Family: Clethraceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262071545|gb|ACY08897.1| MADS-domain transcription factor, partial [Saurauia zahlbruckneri]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 158/214 (73%), Positives = 186/214 (86%), Gaps = 6/214 (2%)

Query: 15  TNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKS 74
           TNRQVTYSKRRNGIFKKAQELTVLCDAKVSL+MFSNTGKFHEYISP  +TKK++DQYQK+
Sbjct: 3   TNRQVTYSKRRNGIFKKAQELTVLCDAKVSLLMFSNTGKFHEYISPNISTKKIYDQYQKA 62

Query: 75  LGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQR-MGEDLDDLTFEELRGLEQNMSSSAA 133
           LG+DLWSTHY +MQE  RKLKE+NN+LR++IRQR MGEDL+DL+  ELRGLEQ MS+S  
Sbjct: 63  LGIDLWSTHYERMQEHLRKLKEVNNRLRREIRQRMMGEDLNDLSVHELRGLEQKMSASLT 122

Query: 134 TVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYD-DPHYGLVDN-GDYQSAMAL 191
            +R+RK+HVIKTQT+TY+KKVRNLEERHGN+LLDFE+K + DPH+  V++ GDY SA+A 
Sbjct: 123 IIRDRKYHVIKTQTETYRKKVRNLEERHGNLLLDFESKCEIDPHFEPVEHEGDYDSAVAF 182

Query: 192 ANGASNLYAFRMQ--QQNLHQGTGGYGSSDLTLA 223
           ANG SNLYAFR+Q    NLH G GG+GS DL LA
Sbjct: 183 ANGVSNLYAFRLQPNHPNLHHG-GGFGSHDLRLA 215

Source: Saurauia zahlbruckneri

Species: Saurauia zahlbruckneri

Genus: Saurauia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262071537|gb|ACY08893.1| MADS-domain transcription factor, partial [Styrax japonicus]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 155/210 (73%), Positives = 179/210 (85%), Gaps = 4/210 (1%)

Query: 17  RQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLG 76
           RQVTYSKRRNGIFKKAQELTVLCDAKVSL+MFSNTGKFHEY SP+TTTKK++DQYQK+LG
Sbjct: 1   RQVTYSKRRNGIFKKAQELTVLCDAKVSLVMFSNTGKFHEYTSPSTTTKKIYDQYQKALG 60

Query: 77  VDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVR 136
           +DLW+THY +MQE  RKL+E NNKLR++IRQRMGEDLDDL  EELRGLEQ +++S   +R
Sbjct: 61  IDLWNTHYERMQEHLRKLEETNNKLRREIRQRMGEDLDDLDIEELRGLEQKIATSLTVIR 120

Query: 137 ERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDN-GDYQSAMALANGA 195
           +RK HVIKTQT+TY+KKVRNLEERHGN+LLD E K +DP YGLVDN G Y +A+A ANG 
Sbjct: 121 DRKCHVIKTQTETYRKKVRNLEERHGNLLLDLEAKCEDPQYGLVDNGGGYDTAIAFANGV 180

Query: 196 SNLYAFRMQ--QQNLHQGTGGYGSSDLTLA 223
           SNLYAFR+Q    NLH G GG+   DL LA
Sbjct: 181 SNLYAFRLQPNHPNLHHG-GGFECHDLRLA 209

Source: Styrax japonicus

Species: Styrax japonicus

Genus: Styrax

Family: Styracaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|262071515|gb|ACY08882.1| MADS-domain transcription factor, partial [Alangium platanifolium]

 Score =  322 bits (825), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 156/212 (73%), Positives = 182/212 (85%), Gaps = 4/212 (1%)

Query: 15  TNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKS 74
           TNRQVTYSKRRNGIFKKAQELTVLCDAKVSL+MF NTGKFHEY SP+TTTKK++DQYQK+
Sbjct: 3   TNRQVTYSKRRNGIFKKAQELTVLCDAKVSLVMFPNTGKFHEYTSPSTTTKKIYDQYQKT 62

Query: 75  LGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAAT 134
           LGVDLW THY +MQE+ RKLKE+NNKLR++IRQRMGE+L+D + EELR  EQ M+ S A 
Sbjct: 63  LGVDLWKTHYERMQENLRKLKEVNNKLRREIRQRMGEELNDTSLEELRSPEQRMNVSLAV 122

Query: 135 VRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVD-NGDYQSAMALAN 193
           +RERK+HVIKTQT+TY+KKVRNLEER+GN+LLDFE KY+D   GLVD  GDY+SA+A AN
Sbjct: 123 IRERKYHVIKTQTETYRKKVRNLEERYGNLLLDFEAKYEDLQNGLVDIEGDYESAVAYAN 182

Query: 194 GASNLYAFRMQ--QQNLHQGTGGYGSSDLTLA 223
           G SNLYAFR+   Q N+H   GG+GS DL LA
Sbjct: 183 GISNLYAFRLHPTQPNVHH-EGGFGSHDLRLA 213

Source: Alangium platanifolium

Species: Alangium platanifolium

Genus: Alangium

Family: Cornaceae

Order: Cornales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
UNIPROTKB|Q9ZS28	226	gdef1 "MADs-box protein, GDEF1	0.955	0.942	0.671	1.9e-74
UNIPROTKB|P23706	227	DEFA "Floral homeotic protein	0.986	0.969	0.608	1.1e-69
TAIR|locus:2096164	232	AP3 "APETALA 3" [Arabidopsis t	0.937	0.900	0.557	1.1e-57
UNIPROTKB|Q9ZS27	228	gdef2 "MADS-box protein, GDEF2	0.991	0.969	0.513	1.6e-56
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.798	0.903	0.414	5.8e-34
UNIPROTKB|Q03378	215	GLO "Floral homeotic protein G	0.892	0.925	0.366	9.5e-34
TAIR|locus:2149264	208	PI "PISTILLATA" [Arabidopsis t	0.641	0.687	0.440	1.3e-29
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.717	0.599	0.421	1.5e-28
TAIR|locus:2140578	256	STK "AT4G09960" [Arabidopsis t	0.950	0.828	0.343	1.9e-28
TAIR|locus:2137070	221	AGL14 "AGAMOUS-like 14" [Arabi	0.690	0.696	0.441	3.1e-28

UNIPROTKB|Q9ZS28 gdef1 "MADs-box protein, GDEF1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 145/216 (67%), Positives = 175/216 (81%)

Query:     1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
             MGRGKIEIK+IEN TNRQVTYSKRRNGIFKKA ELTVLCDAKVSLIMFSNTGKFHEYISP
Sbjct:     1 MGRGKIEIKKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYISP 60

Query:    61 TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQR-MGEDLDDLTFE 119
             +TTTKKM+DQYQ ++G DLWS+HY +M+E+ +KLK+ NNKLR++IRQR +GED D L   
Sbjct:    61 STTTKKMYDQYQSTVGFDLWSSHYERMKETMKKLKDTNNKLRREIRQRVLGEDFDGLDMN 120

Query:   120 ELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYD-DPHYG 178
             +L  LEQ+M  S   VRERK+HVIKTQTDT +K+VRNLE+R+GN+ LD+ET +  D  Y 
Sbjct:   121 DLTSLEQHMQDSLTLVRERKYHVIKTQTDTCRKRVRNLEQRNGNLRLDYETIHQLDKKYD 180

Query:   179 LVDN-GDYQSAMALANGASNLYAFRMQQQNLHQGTG 213
               +N GDY+S +A +NG SNLYAF +   N+  G G
Sbjct:   181 TGENEGDYESVVAYSNGVSNLYAFCVHPNNIPHGAG 216

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P23706 DEFA "Floral homeotic protein DEFICIENS" [Antirrhinum majus (taxid:4151)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 135/222 (60%), Positives = 169/222 (76%)

Query:     1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
             M RGKI+IKRIEN TNRQVTYSKRRNG+FKKA EL+VLCDAKVS+IM S+T K HEYISP
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query:    61 TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
             TT TK++FDQYQK++GVDLWS+HY KMQE  +KL E+N  LR++IRQRMGE L+DL +E+
Sbjct:    61 TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query:   121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
             +  L ++M +S   +RERK+ VI  Q DT KKKVRN+EE H N++L+F+ + +DPH+GLV
Sbjct:   121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLV 180

Query:   181 DN-GDYQSAMALANGASNLYAFRMQQQNLHQGTGGYGSSDLT 221
             DN GDY S +   NG   + A R+   N H      G SDLT
Sbjct:   181 DNEGDYNSVLGFPNGGPRIIALRLPT-NHHPTLHSGGGSDLT 221

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2096164 AP3 "APETALA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 117/210 (55%), Positives = 148/210 (70%)

Query:     1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
             M RGKI+IKRIEN TNRQVTYSKRRNG+FKKA ELTVLCDA+VS+IMFS++ K HEYISP
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query:    61 TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
              TTTK++ D YQ    VD+W+T Y +MQE+ RKL E N  LR  I+QR+GE LD+L  +E
Sbjct:    61 NTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQE 120

Query:   121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
             LR LE  M ++   VRERKF  +  Q +T KKK ++ ++   N++ + E + +DPHYGLV
Sbjct:   121 LRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDPHYGLV 180

Query:   181 DNG-DYQSAMALANGASNLYAFRMQQQNLH 209
             DNG DY S +      S  YA R  Q + H
Sbjct:   181 DNGGDYDSVLGYQIEGSRAYALRFHQNHHH 210

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q9ZS27 gdef2 "MADS-box protein, GDEF2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 114/222 (51%), Positives = 155/222 (69%)

Query:     1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
             M RGKI+IK+IEN TNRQVTYSKRRNG+FKKA ELTVLCDAKVS+IM S T K HEYISP
Sbjct:     1 MARGKIQIKKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYISP 60

Query:    61 TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
             + TTK+ FDQYQK+ G+DLW++HY KMQE  R+LKE+N  LR+ IRQR+G+ L+DL FEE
Sbjct:    61 SITTKQFFDQYQKASGIDLWNSHYEKMQEELRQLKEVNRNLRRQIRQRLGDCLEDLGFEE 120

Query:   121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
                LE+    +   +RERK  VI  + +T KKKVR+ ++ +  ++ +F+ + +DP YG++
Sbjct:   121 FLDLEKESQEAVYIIRERKLKVIGNKLETSKKKVRSAQDVYKKLMHEFDIRGEDPQYGMI 180

Query:   181 DNG-DYQSAMALANGASNLYAFRMQQQNLHQGTGGYGSSDLT 221
             ++G +Y++        S      ++ Q  H       +SDLT
Sbjct:   181 EDGVEYEALYGYPPHISAPRILTLRLQPNHPDNLHAAASDLT 222

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 78/188 (41%), Positives = 114/188 (60%)

Query:     1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
             MGRGKIEIKRIEN +NRQVTYSKR+NGI KKA+E+TVLCDA VSL+++ ++GK +EY SP
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCSP 60

Query:    61 TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
              T    M D+YQ+  G  LW   +  +Q    ++K+ N  ++ ++R   GED+  L +EE
Sbjct:    61 KTNLIDMLDRYQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEE 120

Query:   121 LRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLV 180
             L   E  + +    +RE+K  + K      +K  + LEE + +++      Y      + 
Sbjct:   121 LIAYEDALENGLTNIREKKDEIPKIM----RKHEQVLEEENKHLM------YLVQQSEMA 170

Query:   181 DNGDYQSA 188
               GDYQ+A
Sbjct:   171 AMGDYQAA 178

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q03378 GLO "Floral homeotic protein GLOBOSA" [Antirrhinum majus (taxid:4151)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 82/224 (36%), Positives = 132/224 (58%)

Query:     1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
             MGRGKIEIKRIEN +NRQVTYSKRRNGI KKA+E++VLCDA VS+I+F+++GK HE+ SP
Sbjct:     1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query:    61 TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
             +TT   M D Y K  G  LW   +  +     ++K+ N+ ++ ++R   GED+  L ++E
Sbjct:    61 STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query:   121 LRGLEQNMSSSAATVRERKFHVIK------------TQTDTYKKKVRNLEERHGNILLDF 168
             L  LE  + +  + ++ ++   ++             Q+  +K +  +L+  + N++ + 
Sbjct:   121 LMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEENQSLQFKLRQMHLDPMNDNVM-ES 179

Query:   169 ETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQ--QQNLHQ 210
             +  YD  H+  +   DY++ M         +AFR+Q  Q NL +
Sbjct:   180 QAVYDHHHHQNI--ADYEAQMP--------FAFRVQPMQPNLQE 213

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149264 PI "PISTILLATA" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 63/143 (44%), Positives = 90/143 (62%)

Query:     1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
             MGRGKIEIKRIEN  NR VT+SKRRNG+ KKA+E+TVLCDAKV+LI+F++ GK  +Y  P
Sbjct:     1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query:    61 TTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEE 120
             +     M DQYQK  G  LW   +  +     ++K+ N+ L+ ++R   GED+  L  + 
Sbjct:    61 SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query:   121 LRGLEQNMSSSAATVRERKFHVI 143
             L  +E  +      VR+ +  ++
Sbjct:   121 LMAVEHAIEHGLDKVRDHQMEIL 143

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 70/166 (42%), Positives = 104/166 (62%)

Query:     1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
             MGRGK+++KRIEN  NRQVT+SKRRNG+ KKA E++VLCDA+V+ I+FS  GK +EY + 
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATD 60

Query:    61 TTTTK--KMFDQY---QKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDD 115
             +   K  + +++Y   +K+L +   S         YRKLK     ++K  +  MGEDL+ 
Sbjct:    61 SRMDKILERYERYSYAEKAL-ISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLES 119

Query:   116 LTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 161
             L  +EL+ LEQ + SS   +  RK H++       +KK R+L+E +
Sbjct:   120 LNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEEN 165

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2140578 STK "AT4G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 79/230 (34%), Positives = 126/230 (54%)

Query:     1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
             MGRGKIEIKRIEN TNRQVT+ KRRNG+ KKA EL+VLCDA+V+LI+FS  G+ +EY + 
Sbjct:    27 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN- 85

Query:    61 TTTTKKMFDQYQKSLGVDLWST------HYAKMQESYRKLKEINNKLRKDIRQRMGEDLD 114
                 +   ++Y+K+   D  +T      + A  Q+   KL++    ++   R  MG+ L 
Sbjct:    86 -NNIRSTIERYKKACS-DSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLS 143

Query:   115 DLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFET---- 170
              L+ +EL+ +E  +  + + +R +K  ++  + +  +K  R +E  + NI L  +     
Sbjct:   144 SLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQK--REIELDNENIYLRTKVAEVE 201

Query:   171 KYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQQQNLHQGTGG-YGSSD 219
             +Y   H+ +V   +  +  ALA+   N +A  +       G GG Y   D
Sbjct:   202 RYQQHHHQMVSGSEINAIEALAS--RNYFAHSIMTAGSGSGNGGSYSDPD 249

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048440 "carpel development" evidence=IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0048316 "seed development" evidence=IGI

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2137070 AGL14 "AGAMOUS-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 72/163 (44%), Positives = 105/163 (64%)

Query:     1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
             M RGK E+KRIEN T+RQVT+SKRRNG+ KKA EL+VLCDA+V+LI+FS  GK +E+ S 
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SS 59

Query:    61 TTTTKKMFDQYQKSLGVDLWSTH------YAKMQESYRKLKEINNKLRKDIRQRMGEDLD 114
             +++  K  ++YQK +  DL S H           E+Y   ++I + L    R+ MGE LD
Sbjct:    60 SSSIPKTVERYQKRIQ-DLGSNHKRNDNSQQSKDETYGLARKIEH-LEISTRKMMGEGLD 117

Query:   115 DLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNL 157
               + EEL+ LE  +  S   +R +K+ +++ +T+  K+K RNL
Sbjct:   118 ASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNL 160

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42498	CMB2_DIACA	No assigned EC number	0.5586	0.8026	0.8364	N/A	no
Q944S9	MAD16_ORYSJ	No assigned EC number	0.5530	0.9910	0.9866	yes	no
Q07472	MADS1_PETHY	No assigned EC number	0.6274	0.9058	0.8744	N/A	no
P23706	DEFA_ANTMA	No assigned EC number	0.6044	0.9730	0.9559	N/A	no
P35632	AP3_ARATH	No assigned EC number	0.5333	0.9865	0.9482	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: TM6 SubName- Full=Flowering-related B-class MADS-box protein (Putative uncharacterized protein) (Chromosome chr4 scaffold_83, whole genome shotgun sequence); (225 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	2e-40
smart00432	59	smart00432, MADS, MADS domain	4e-34
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-30
pfam01486	100	pfam01486, K-box, K-box region	2e-28
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	3e-25
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	2e-23
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	7e-09

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  132 bits (335), Expect = 2e-40
 Identities = 51/79 (64%), Positives = 67/79 (84%), Gaps = 2/79 (2%)

Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPT 61
          GRGKIEIKRIEN TNRQVT+SKRRNG+ KKA EL+VLCDA+V+LI+FS++GK +E+ SP 
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP- 59

Query: 62 TTTKKMFDQYQKSLGVDLW 80
           + +K+ ++YQK+ G  LW
Sbjct: 60 -SMEKIIERYQKTSGSSLW 77

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  116 bits (292), Expect = 4e-34
 Identities = 45/59 (76%), Positives = 53/59 (89%)

Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
          GR KIEIKRIEN TNRQVT+SKRRNG+FKKA EL+VLCDA+V+LI+FS TGK +E+ SP
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  106 bits (268), Expect = 1e-30
 Identities = 42/59 (71%), Positives = 53/59 (89%)

Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
          GRGKIEIKRIEN T+RQVT+SKRRNG+FKKA EL+VLCDA+V++I+FS +GK +E+ S 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score =  102 bits (257), Expect = 2e-28
 Identities = 36/99 (36%), Positives = 57/99 (57%)

Query: 71  YQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSS 130
           YQK  G DLW + Y  +Q+   KLK+ N  L+++ R  +GEDL  L+ +EL+ LEQ + +
Sbjct: 1   YQKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLEN 60

Query: 131 SAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169
               +R RK  ++  Q +  +KK R L+E + N+    E
Sbjct: 61  GLKHIRSRKNELLLNQIEELQKKERELQEENRNLRQKLE 99

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 93.9 bits (234), Expect = 3e-25
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 14/94 (14%)

Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPT 61
          GR KI+IKRIEN   R VT+SKRR G+FKKA EL+ LC A+V++I++S +GK + +   +
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 TTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLK 95
                         V+   + +  +    RK K
Sbjct: 61 --------------EVEGVISRFEVLSALERKKK 80

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 88.2 bits (219), Expect = 2e-23
 Identities = 38/51 (74%), Positives = 47/51 (92%)

Query: 9  KRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
          KRIEN +NRQVT+SKRRNGIFKKA EL+VLCDA+V++I+FS+TGK +EY S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 54.6 bits (131), Expect = 7e-09
 Identities = 27/60 (45%), Positives = 37/60 (61%)

Query: 1   MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           +   KI I  I N T R VT+SKR++GI KKA EL+VL   +V L++ S  G  H + +P
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.97
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.85
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.78
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.49
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.77
PRK04098	158	sec-independent translocase; Provisional	89.51
KOG4797	123	consensus Transcriptional regulator [Transcription	88.46
PRK15422	79	septal ring assembly protein ZapB; Provisional	84.77
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	84.34
PRK10884	206	SH3 domain-containing protein; Provisional	84.3
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	83.96
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	83.6
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	83.55
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	82.7
PHA03155	115	hypothetical protein; Provisional	82.01
PHA03162	135	hypothetical protein; Provisional	82.01
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.71
COG2433	652	Uncharacterized conserved protein [Function unknow	81.64
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	80.86
KOG1962	216	consensus B-cell receptor-associated protein and r	80.46
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	80.43

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=5.6e-39  Score=264.03  Aligned_cols=154  Identities=39%  Similarity=0.536  Sum_probs=122.2

Q ss_pred             CCcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhcCcccc
Q 027470            1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLW   80 (223)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~~~~~   80 (223)
                      |||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+||+|+.+|.+|++||...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999876799999999876542211


Q ss_pred             c---chhhh----------------------hHHHHHHHHHHHHHHH---HHHHhhcCCCCCCCCH-HHHHHHHHHHHhh
Q 027470           81 S---THYAK----------------------MQESYRKLKEINNKLR---KDIRQRMGEDLDDLTF-EELRGLEQNMSSS  131 (223)
Q Consensus        81 ~---~~~e~----------------------lq~el~kLk~~~~~L~---~e~r~~~GedL~~Ls~-~EL~~LE~~Le~~  131 (223)
                      .   .....                      .......++...+.+.   ...++..|+++.+++. ++|..++.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            0   00000                      1112223333334443   2366788999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHhHH-HHHHHH
Q 027470          132 AATVRERKFHVIKTQTD-TYKKKV  154 (223)
Q Consensus       132 l~~IR~RK~~ll~~qi~-~lkkk~  154 (223)
                      +..+|..+...+..++. .++.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~  184 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKE  184 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccc
Confidence            99999999888877765 434433

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=3.5e-35  Score=207.18  Aligned_cols=77  Identities=66%  Similarity=1.110  Sum_probs=74.2

Q ss_pred             CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhcCcccc
Q 027470            2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLW   80 (223)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~~~~~   80 (223)
                      ||+||+|++|+|+.+|++||+||++||||||.||||||||+||+|||||+|++|+|+||+  +++||+||...++.++|
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~~   77 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSLW   77 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhccccccC
Confidence            899999999999999999999999999999999999999999999999999999999987  69999999999887766

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=1.6e-31  Score=191.21  Aligned_cols=74  Identities=43%  Similarity=0.748  Sum_probs=70.7

Q ss_pred             CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhcC
Q 027470            2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLG   76 (223)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~   76 (223)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.++|++++. +..++++|...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~   74 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSA   74 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCH
Confidence            8999999999999999999999999999999999999999999999999999999988875 9999999988764

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.97  E-value=2.7e-31  Score=177.25  Aligned_cols=59  Identities=76%  Similarity=1.140  Sum_probs=58.2

Q ss_pred             CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCC
Q 027470            2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP   60 (223)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sp   60 (223)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=2.3e-30  Score=172.82  Aligned_cols=59  Identities=71%  Similarity=1.097  Sum_probs=57.8

Q ss_pred             CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCC
Q 027470            2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP   60 (223)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sp   60 (223)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=2.6e-28  Score=157.76  Aligned_cols=51  Identities=55%  Similarity=0.905  Sum_probs=46.9

Q ss_pred             eeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccC
Q 027470            9 KRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS   59 (223)
Q Consensus         9 k~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~s   59 (223)
                      |+|+|++.|++||+||+.||||||.||||||||+||+|||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999976

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.85  E-value=8.1e-21  Score=140.64  Aligned_cols=99  Identities=39%  Similarity=0.645  Sum_probs=96.2

Q ss_pred             HhhhcCcccccchhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHH
Q 027470           71 YQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTY  150 (223)
Q Consensus        71 Y~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~e~r~~~GedL~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~l  150 (223)
                      |++.++.+.|...++.++.++.+++.+++.|+..+|+++|+||++||++||..||++|+.+|.+||+||++++.++|+.+
T Consensus         1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l   80 (100)
T PF01486_consen    1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEEL   80 (100)
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            77888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 027470          151 KKKVRNLEERHGNILLDFE  169 (223)
Q Consensus       151 kkk~~~l~een~~L~~~~~  169 (223)
                      ++|++.+.++|..|+.++.
T Consensus        81 ~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   81 KKKERELEEENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999874

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.78  E-value=3.3e-20  Score=157.28  Aligned_cols=75  Identities=37%  Similarity=0.549  Sum_probs=65.6

Q ss_pred             CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcc-------hhhHHHHHHhhh
Q 027470            2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTT-------TTKKMFDQYQKS   74 (223)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~-------~~~~ii~RY~~~   74 (223)
                      ||.||+|.+|||+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|.|+.|--       .=+.+|....+.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999999999999999862       114555555555


Q ss_pred             cC
Q 027470           75 LG   76 (223)
Q Consensus        75 ~~   76 (223)
                      ++
T Consensus       143 pd  144 (338)
T KOG0015|consen  143 PD  144 (338)
T ss_pred             CC
Confidence            44

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.49  E-value=1.1e-14  Score=128.98  Aligned_cols=61  Identities=44%  Similarity=0.643  Sum_probs=60.0

Q ss_pred             CCcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCc
Q 027470            1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPT   61 (223)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps   61 (223)
                      |||+||.|.+|+|+.+|.|||+||+.||+|||.||+||.+.+|.++|.|.+|+++.|+.|.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~  141 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK  141 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc
Confidence            7899999999999999999999999999999999999999999999999999999999986

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.77  E-value=1.5  Score=30.33  Aligned_cols=48  Identities=19%  Similarity=0.349  Sum_probs=33.4

Q ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470          116 LTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDF  168 (223)
Q Consensus       116 Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~  168 (223)
                      ++++.|..||..+..++..|..     +..+++.|+.+...|.++|..|..+.
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en   48 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEEN   48 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5788999999999999999864     44555677777555555555555544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK04098 sec-independent translocase; Provisional

Probab=89.51  E-value=0.36  Score=38.43  Aligned_cols=78  Identities=19%  Similarity=0.306  Sum_probs=43.2

Q ss_pred             ceeEEEecCCCCcccccCCcchhhHHHHHHhhhcCcc--ccc--chhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 027470           42 KVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVD--LWS--THYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLT  117 (223)
Q Consensus        42 evalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~~~--~~~--~~~e~lq~el~kLk~~~~~L~~e~r~~~GedL~~Ls  117 (223)
                      =||||||+| .|+++.+-   ++-..+..+++....-  -..  -....+++++.+.++..+....+++       ..++
T Consensus        14 vVaLlvfGP-~KLP~~~r---~lGk~ir~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~-------~~~~   82 (158)
T PRK04098         14 VVAIIFLGP-DKLPQAMV---DIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLK-------KKLK   82 (158)
T ss_pred             HHHHhhcCc-hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hccC
Confidence            478999999 79998865   4667777777754310  000  1122344444444444444333333       2267


Q ss_pred             HHHHHHHHHHHHh
Q 027470          118 FEELRGLEQNMSS  130 (223)
Q Consensus       118 ~~EL~~LE~~Le~  130 (223)
                      +++|.++-..+..
T Consensus        83 ~eel~~~~~~~~~   95 (158)
T PRK04098         83 FEELDDLKITAEN   95 (158)
T ss_pred             hHHHHHHhhhhhh
Confidence            7777766544443

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=88.46  E-value=2.3  Score=31.63  Aligned_cols=43  Identities=16%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470          126 QNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDF  168 (223)
Q Consensus       126 ~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~  168 (223)
                      +.++.++.-|...-+-.+.++++.||.+++.|++.|..|..+-
T Consensus        48 NKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN   90 (123)
T KOG4797|consen   48 NKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALEREN   90 (123)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666667666666667888888888888877777776654

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=84.77  E-value=7.1  Score=27.37  Aligned_cols=43  Identities=19%  Similarity=0.372  Sum_probs=33.0

Q ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027470          116 LTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGN  163 (223)
Q Consensus       116 Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~  163 (223)
                      +|++=|..||..+..++..|-     ++.-+|+.||.|...|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            578889999999999999884     6666778888876666665544

>smart00787 Spc7 Spc7 kinetochore protein

Probab=84.34  E-value=19  Score=31.90  Aligned_cols=74  Identities=12%  Similarity=0.282  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470           96 EINNKLRKDIRQRM--GEDLDDLTFEELRGLEQNMSSSAATVRERKFHV--IKTQTDTYKKKVRNLEERHGNILLDFE  169 (223)
Q Consensus        96 ~~~~~L~~e~r~~~--GedL~~Ls~~EL~~LE~~Le~~l~~IR~RK~~l--l~~qi~~lkkk~~~l~een~~L~~~~~  169 (223)
                      +....|+.++.++.  -.++++++.++|..+...|..-...|..++..+  +.+++..+..++....++-..+..++.
T Consensus       179 ~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~  256 (312)
T smart00787      179 DRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA  256 (312)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444442  357899999999999999999988888776664  345566666666666666666666664

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.30  E-value=21  Score=29.71  Aligned_cols=77  Identities=12%  Similarity=0.109  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHhhHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027470           87 MQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVR--ERKFHVIKTQTDTYKKKVRNLEERHGNI  164 (223)
Q Consensus        87 lq~el~kLk~~~~~L~~e~r~~~GedL~~Ls~~EL~~LE~~Le~~l~~IR--~RK~~ll~~qi~~lkkk~~~l~een~~L  164 (223)
                      +...+..++.+++.++.++....++     .-+...++.+.+..+-..|.  ...++-+.+++..++.+...++.+|..+
T Consensus        91 ~~~rlp~le~el~~l~~~l~~~~~~-----~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~  165 (206)
T PRK10884         91 LRTRVPDLENQVKTLTDKLNNIDNT-----WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK  165 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555665555554443322     11344444554444444443  3444555777777777777777777777


Q ss_pred             HHHH
Q 027470          165 LLDF  168 (223)
Q Consensus       165 ~~~~  168 (223)
                      ....
T Consensus       166 ~~~~  169 (206)
T PRK10884        166 QRTI  169 (206)
T ss_pred             HHHH
Confidence            6554

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=83.96  E-value=2.9  Score=27.58  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=19.8

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470          141 HVIKTQTDTYKKKVRNLEERHGNILLDF  168 (223)
Q Consensus       141 ~ll~~qi~~lkkk~~~l~een~~L~~~~  168 (223)
                      +.+.++|..|..+...|+.||..|+...
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~   44 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQNA   44 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3556777777777777777777776654

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.60  E-value=11  Score=25.79  Aligned_cols=48  Identities=17%  Similarity=0.287  Sum_probs=34.4

Q ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470          116 LTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDF  168 (223)
Q Consensus       116 Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~  168 (223)
                      +|++=|..||..+..++..|     .++.-+|+.||.|...|..+-..+.+..
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~r   48 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQR   48 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence            57778888999988888877     4666777888887776666555444433

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=83.55  E-value=9.5  Score=28.90  Aligned_cols=58  Identities=22%  Similarity=0.306  Sum_probs=42.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 027470           83 HYAKMQESYRKLKEINNKLRKDIRQRMG----EDLDDLTFEELRGLEQNMSSSAATVRERKF  140 (223)
Q Consensus        83 ~~e~lq~el~kLk~~~~~L~~e~r~~~G----edL~~Ls~~EL~~LE~~Le~~l~~IR~RK~  140 (223)
                      .++.|..++.+|+-+|..|++.+++-.|    .+-.-|+..+=..+-...-.+|...-.+|-
T Consensus         4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KI   65 (118)
T PF05812_consen    4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKI   65 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999998887    566778988877777777777766665553

; PDB: 2OA5_B 2H3R_D.

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=82.70  E-value=0.26  Score=26.40  Aligned_cols=14  Identities=29%  Similarity=0.548  Sum_probs=11.1

Q ss_pred             eeEEEecCCCCccc
Q 027470           43 VSLIMFSNTGKFHE   56 (223)
Q Consensus        43 valIvfs~~gk~~~   56 (223)
                      ..+.+|||.|+++.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            35678999999984

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PHA03155 hypothetical protein; Provisional

Probab=82.01  E-value=14  Score=27.83  Aligned_cols=58  Identities=19%  Similarity=0.216  Sum_probs=45.4

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHhhHHHHHHHH
Q 027470           82 THYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERK  139 (223)
Q Consensus        82 ~~~e~lq~el~kLk~~~~~L~~e~r~~~GedL~~Ls~~EL~~LE~~Le~~l~~IR~RK  139 (223)
                      ...|.|..++.+|+-+|..|++.+++-.+.+=.-|+..+=..+-...-.+|...-.+|
T Consensus         8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K   65 (115)
T PHA03155          8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK   65 (115)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999987766655566888887777777777776666555

>PHA03162 hypothetical protein; Provisional

Probab=82.01  E-value=13  Score=28.59  Aligned_cols=59  Identities=17%  Similarity=0.186  Sum_probs=44.5

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 027470           82 THYAKMQESYRKLKEINNKLRKDIRQRMGED----LDDLTFEELRGLEQNMSSSAATVRERKF  140 (223)
Q Consensus        82 ~~~e~lq~el~kLk~~~~~L~~e~r~~~Ged----L~~Ls~~EL~~LE~~Le~~l~~IR~RK~  140 (223)
                      ...|.|..++.+|+-||..|++.+++-.|.+    =..|+..+=.-+-...-.+|...-.+|-
T Consensus        13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKI   75 (135)
T PHA03162         13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKI   75 (135)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999998777655    2348888777776666666666655553

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.71  E-value=28  Score=30.81  Aligned_cols=59  Identities=20%  Similarity=0.454  Sum_probs=45.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470          111 EDLDDLTFEELRGLEQNMSSSAATVRERKFHV--IKTQTDTYKKKVRNLEERHGNILLDFE  169 (223)
Q Consensus       111 edL~~Ls~~EL~~LE~~Le~~l~~IR~RK~~l--l~~qi~~lkkk~~~l~een~~L~~~~~  169 (223)
                      .+++.++.++|..+...|...-..|.++|..+  +..++..++.++..+.++...+..++.
T Consensus       201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~  261 (325)
T PF08317_consen  201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA  261 (325)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999998888777665  346666666677777777777776664

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=81.64  E-value=25  Score=33.96  Aligned_cols=73  Identities=18%  Similarity=0.377  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHH
Q 027470           87 MQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVR-----ERKFHVIKTQTDTYKKKVRNLEERH  161 (223)
Q Consensus        87 lq~el~kLk~~~~~L~~e~r~~~GedL~~Ls~~EL~~LE~~Le~~l~~IR-----~RK~~ll~~qi~~lkkk~~~l~een  161 (223)
                      +...+++|+.+|..|+.++..+.         .++..|+..|+..-..++     .|+.+.+...|+.|+++...-...-
T Consensus       427 ~~~~ve~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v  497 (652)
T COG2433         427 LEETVERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV  497 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566666666665554443         567777777776666655     4555566677777777655444444


Q ss_pred             HHHHHHH
Q 027470          162 GNILLDF  168 (223)
Q Consensus       162 ~~L~~~~  168 (223)
                      ..|..++
T Consensus       498 e~L~~~l  504 (652)
T COG2433         498 EELERKL  504 (652)
T ss_pred             HHHHHHH
Confidence            4444433

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=80.86  E-value=2.8  Score=31.29  Aligned_cols=22  Identities=36%  Similarity=0.386  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 027470          148 DTYKKKVRNLEERHGNILLDFE  169 (223)
Q Consensus       148 ~~lkkk~~~l~een~~L~~~~~  169 (223)
                      ..+++|.+.|+|||+.|+.+++
T Consensus        75 ~rlkkk~~~LeEENNlLklKie   96 (108)
T cd07429          75 LRLKKKNQQLEEENNLLKLKIE   96 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778888899999888875

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=80.46  E-value=21  Score=29.97  Aligned_cols=56  Identities=16%  Similarity=0.262  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHhhHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027470          115 DLTFEELRGLEQNMSSSAATVRERK--FHVIKTQTDTYKKKVRNLEERHGNILLDFET  170 (223)
Q Consensus       115 ~Ls~~EL~~LE~~Le~~l~~IR~RK--~~ll~~qi~~lkkk~~~l~een~~L~~~~~~  170 (223)
                      +-..+|+..|+..++..-+......  ..-+..|.+.+.+....|-|+|+.|+.+++.
T Consensus       154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~  211 (216)
T KOG1962|consen  154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES  211 (216)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence            3455678888888877666655333  3345677778888788888888888888853

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=80.43  E-value=2.9  Score=27.73  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=25.0

Q ss_pred             hhcCCCCCCCCHHHHHHHHHHHHhhHHHHHH
Q 027470          107 QRMGEDLDDLTFEELRGLEQNMSSSAATVRE  137 (223)
Q Consensus       107 ~~~GedL~~Ls~~EL~~LE~~Le~~l~~IR~  137 (223)
                      +..|+||+.||++||..--..|+.-+.++++
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999877777776666654

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		2e-12
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-12
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		3e-12
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		3e-12
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		9e-12
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		1e-11
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		9e-10
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		7e-06
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		8e-06

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 45/59 (76%)
Query: 1  MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
          MGR KI+I RI +  NRQVT++KR+ G+ KKA EL+VLCD +++LI+F++  +  +Y S
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAS 59

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
          GR KI+I RI +  NRQVT++KR+ G+ KKA EL+VLCD +++LI+F+++ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
          GR KI+I RI +  NRQVT++KR+ G+ KKA EL+VLCD +++LI+F+++ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
          GR KI+I RI +  NRQVT++KR+ G+ KKA EL+VLCD +++LI+F+++ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 44/58 (75%)
Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
          GR KI+I RI +  NRQVT++KR+ G+ KKA EL+VLCD +++LI+F++  +  +Y S
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAS 58

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
          GR KI+I RI +  NRQVT++KR+ G+ KKA EL+VL DA+++LI+F+++ K  +Y S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAS 58

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 3  RGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
          R KIEIK IEN T R VT+SKR++GI KKA EL+VL   +V L++ S TG  + + +P
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEY 57
          GR KI+++ I+N   R  T+SKR+ GI KKA EL+ L   +V L++ S TG  + +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
          GR KI+++ I+N   R  T+SKR+ GI KKA EL+ L   +V L++ S TG  + + +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	1e-37
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	5e-37
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-36
1hbx_A	92	SRF, serum response factor; gene regulation, trans	8e-35
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	7e-34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  125 bits (316), Expect = 1e-37
 Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 2/92 (2%)

Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPT 61
          GR KI+I RI +  NRQVT++KR+ G+ KKA EL+VLCD +++LI+F+++ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-- 58

Query: 62 TTTKKMFDQYQKSLGVDLWSTHYAKMQESYRK 93
          T   K+  +Y +        T+   ++   +K
Sbjct: 59 TDMDKVLLKYTEYNEPHESRTNSDIVEALNKK 90

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  124 bits (312), Expect = 5e-37
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 1  MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
            R KIEIK IEN T R VT+SKR++GI KKA EL+VL   +V L++ S TG  + + +P
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 TTTTKKMFDQYQK 73
              + +  Q + 
Sbjct: 76 --KFEPIVTQQEG 86

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  122 bits (309), Expect = 1e-36
 Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPT 61
          GR KI+I RI +  NRQVT++KR+ G+ KKA EL+VLCD +++LI+F+++ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 TTTKKMFDQYQK 73
              K+  +Y +
Sbjct: 60 -DMDKVLLKYTE 70

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  118 bits (297), Expect = 8e-35
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           GR KI+++ I+N   R  T+SKR+ GI KKA EL+ L   +V L++ S TG  + + + 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 TTTTKKMFDQYQK 73
              + M      
Sbjct: 70 --KLQPMITSETG 80

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  116 bits (291), Expect = 7e-34
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           GR KI+++ I+N   R  T+SKR+ GI KKA EL+ L   +V L++ S TG  + + + 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 TTTTKKMFDQYQK 73
              + M      
Sbjct: 69 --KLQPMITSETG 79

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 39/162 (24%)

Query: 65  KKMFDQYQKSLGVDLWSTHYAKMQESY------RKLKEINNKLRKDIRQRMGEDLDDLT- 117
           + + D Y      D          + Y        LK I             E +     
Sbjct: 447 RSIVDHYNIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNI----------EHPERMTLFRM 495

Query: 118 -FEELRGLEQ--NMSSSAATVRERKFHVIKTQTDTYKKKVR---NLEERHGNILLDF--- 168
            F + R LEQ     S+A        + +  Q   YK  +       ER  N +LDF   
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDFLPK 554

Query: 169 --ETKYDDPHYGLVDNGDYQSAMALANGASNLY--AFRMQQQ 206
             E      +  L+     +  +AL      ++  A +  Q+
Sbjct: 555 IEENLICSKYTDLL-----R--IALMAEDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	87.7
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	82.57
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	80.62

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1e-39  Score=227.87  Aligned_cols=73  Identities=44%  Similarity=0.749  Sum_probs=69.1

Q ss_pred             CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhcC
Q 027470            2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLG   76 (223)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~   76 (223)
                      ||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+  |++||+||+..++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~--~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC--HHHHHHHHHhccC
Confidence            899999999999999999999999999999999999999999999999999999999874  9999999998753

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=4.7e-39  Score=229.95  Aligned_cols=73  Identities=44%  Similarity=0.749  Sum_probs=70.5

Q ss_pred             CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhcC
Q 027470            2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLG   76 (223)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~   76 (223)
                      ||+||+|++|+|+++|||||||||+||||||+||||||||+||||||||+|++|+|+||+  |..||+||+..+.
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~--~~~il~rY~~~~~   73 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE   73 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHCCS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCC--HHHHHHHHHhcCc
Confidence            899999999999999999999999999999999999999999999999999999999964  9999999998765

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=1.2e-37  Score=226.36  Aligned_cols=77  Identities=43%  Similarity=0.578  Sum_probs=71.0

Q ss_pred             CCcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhcCcccc
Q 027470            1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLW   80 (223)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~~~~~   80 (223)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+  +..|+++|..   .++|
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~G---~~lw   90 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEG---RNLI   90 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHH---HHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhhC---CcHH
Confidence            8999999999999999999999999999999999999999999999999999999999996  7799988864   3455


Q ss_pred             cc
Q 027470           81 ST   82 (223)
Q Consensus        81 ~~   82 (223)
                      +.
T Consensus        91 ~~   92 (100)
T 1mnm_A           91 QA   92 (100)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=2.1e-37  Score=222.31  Aligned_cols=70  Identities=36%  Similarity=0.513  Sum_probs=67.5

Q ss_pred             CCcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHh
Q 027470            1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQ   72 (223)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~   72 (223)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+  |..||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999985  889999764

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=8.9e-37  Score=223.11  Aligned_cols=69  Identities=36%  Similarity=0.520  Sum_probs=66.7

Q ss_pred             CCcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHH
Q 027470            1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQY   71 (223)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY   71 (223)
                      |||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+  |..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999985  88999874

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=87.70  E-value=4.1  Score=27.78  Aligned_cols=43  Identities=19%  Similarity=0.371  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027470          116 LTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGN  163 (223)
Q Consensus       116 Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~  163 (223)
                      +|++=|..||..+..++..|     .++..+|+.||.|...|.+++..
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            68888999999999999887     45566667777776665555555

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=82.57  E-value=7.3  Score=24.81  Aligned_cols=53  Identities=13%  Similarity=0.277  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHhhHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027470          114 DDLTFEELRGLEQNMSSSAATVRE--RKFHVIKTQTDTYKKKVRNLEERHGNILL  166 (223)
Q Consensus       114 ~~Ls~~EL~~LE~~Le~~l~~IR~--RK~~ll~~qi~~lkkk~~~l~een~~L~~  166 (223)
                      +..+++|..++...|-.+=.+|..  +-+.-+.+++..++++...|+.||..|+.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            347889988888888777666652  23344568888999999999999999874

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=80.62  E-value=2.6  Score=28.09  Aligned_cols=28  Identities=18%  Similarity=0.129  Sum_probs=22.1

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470          141 HVIKTQTDTYKKKVRNLEERHGNILLDF  168 (223)
Q Consensus       141 ~ll~~qi~~lkkk~~~l~een~~L~~~~  168 (223)
                      +++.++|.+|..|...|+.||..|+.-.
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a   45 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKTLA   45 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4567888888888888888888887665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	4e-34
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	4e-33
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-31

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (288), Expect = 4e-34
 Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPT 61
          GR KI+I RI +  NRQVT++KR+ G+ KKA EL+VLCD +++LI+F+++ K  +Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 TTTKKMFDQYQK 73
              K+  +Y +
Sbjct: 60 -DMDKVLLKYTE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (282), Expect = 4e-33
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 2  GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPT 61
           R KIEIK IEN T R VT+SKR++GI KKA EL+VL   +V L++ S TG  + + +P 
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP- 61

Query: 62 TTTKKMFDQYQKSLGVDLWSTHYAKMQE 89
             + +  Q +   G +L         +
Sbjct: 62 -KFEPIVTQQE---GRNLIQACLNAPDD 85

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (272), Expect = 1e-31
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
           GR KI+++ I+N   R  T+SKR+ GI KKA EL+ L   +V L++ S TG  + + + 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 TTTTKKMFDQYQK 73
              + M      
Sbjct: 62 --KLQPMITSETG 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-39  Score=217.69  Aligned_cols=70  Identities=46%  Similarity=0.808  Sum_probs=68.2

Q ss_pred             CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhh
Q 027470            2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK   73 (223)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~   73 (223)
                      ||+||+|++|||+.+|+|||||||+||||||.||||||||+||||||||+|++|+|+||+  +++||+||+.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~--~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999999999999999985  8999999985

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-37  Score=213.62  Aligned_cols=72  Identities=35%  Similarity=0.494  Sum_probs=69.0

Q ss_pred             CCcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhh
Q 027470            1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKS   74 (223)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~   74 (223)
                      +||+||+|++|||+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+  ++.|+++|+..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~--~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGG--GHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999985  88999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-36  Score=212.92  Aligned_cols=71  Identities=45%  Similarity=0.617  Sum_probs=68.9

Q ss_pred             CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhh
Q 027470            2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKS   74 (223)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~   74 (223)
                      ||+||+|++|+|+.+|+|||+|||+||||||.||||||||+||||||||+|++|+|+||+  |..||+||...
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~--v~~vl~r~~~~   73 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCC--HHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999999999999999986  88999999864